
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/12/Correlate_Genomic_Events.R")
> result <- main("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/12/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-tTRUE", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/LUSC-TP/8279653/transformed.cor.cli.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/LUSC-TP/8142996/LUSC-TP.merged_data.txt", "-fF=", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=LUSC-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=LUSC-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/LUSC-TP/8142996/LUSC-TP.merged_data.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/LUSC-TP/8279653/transformed.cor.cli.txt"

nPatients in clinical file=411, in cluster file=490, common to both=409
[1]  80 409
[1] "1P GAIN MUTATION ANALYSIS"
[1] 3
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               78               331 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               78               331 
[1] "1Q GAIN MUTATION ANALYSIS"
[1] 3
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
              170               239 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
              170               239 
[1] "2P GAIN MUTATION ANALYSIS"
[1] 3
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
              175               234 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
              175               234 
[1] "2Q GAIN MUTATION ANALYSIS"
[1] 3
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
              115               294 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
              115               294 
[1] "3P GAIN MUTATION ANALYSIS"
[1] 3
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               88               321 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               88               321 
[1] "3Q GAIN MUTATION ANALYSIS"
[1] 3
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
              257               152 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
              257               152 
[1] "4P GAIN MUTATION ANALYSIS"
[1] 3
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               26               383 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               26               383 
[1] "4Q GAIN MUTATION ANALYSIS"
[1] 3
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
               18               391 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
               18               391 
[1] "5P GAIN MUTATION ANALYSIS"
[1] 3
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
              259               150 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
              259               150 
[1] "5Q GAIN MUTATION ANALYSIS"
[1] 3
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               78               331 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               78               331 
[1] "6P GAIN MUTATION ANALYSIS"
[1] 3
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               90               319 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               90               319 
[1] "6Q GAIN MUTATION ANALYSIS"
[1] 3
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               74               335 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               74               335 
[1] "7P GAIN MUTATION ANALYSIS"
[1] 3
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
              198               211 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
              198               211 
[1] "7Q GAIN MUTATION ANALYSIS"
[1] 3
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
              186               223 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
              186               223 
[1] "8P GAIN MUTATION ANALYSIS"
[1] 3
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
              106               303 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
              106               303 
[1] "8Q GAIN MUTATION ANALYSIS"
[1] 3
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
              208               201 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
              208               201 
[1] "9P GAIN MUTATION ANALYSIS"
[1] 3
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               45               364 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               45               364 
[1] "9Q GAIN MUTATION ANALYSIS"
[1] 3
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               75               334 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               75               334 
[1] "10P GAIN MUTATION ANALYSIS"
[1] 3
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                59                350 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                59                350 
[1] "10Q GAIN MUTATION ANALYSIS"
[1] 3
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                34                375 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                34                375 
[1] "11P GAIN MUTATION ANALYSIS"
[1] 3
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                61                348 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                61                348 
[1] "11Q GAIN MUTATION ANALYSIS"
[1] 3
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                74                335 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                74                335 
[1] "12P GAIN MUTATION ANALYSIS"
[1] 3
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
               185                224 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
               185                224 
[1] "12Q GAIN MUTATION ANALYSIS"
[1] 3
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
               126                283 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
               126                283 
[1] "13Q GAIN MUTATION ANALYSIS"
[1] 3
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                31                378 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                31                378 
[1] "14Q GAIN MUTATION ANALYSIS"
[1] 3
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
               102                307 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
               102                307 
[1] "15Q GAIN MUTATION ANALYSIS"
[1] 3
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                88                321 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                88                321 
[1] "16P GAIN MUTATION ANALYSIS"
[1] 3
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                68                341 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                68                341 
[1] "16Q GAIN MUTATION ANALYSIS"
[1] 3
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                69                340 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                69                340 
[1] "17P GAIN MUTATION ANALYSIS"
[1] 3
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                53                356 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                53                356 
[1] "17Q GAIN MUTATION ANALYSIS"
[1] 3
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
               129                280 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
               129                280 
[1] "18P GAIN MUTATION ANALYSIS"
[1] 3
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
               129                280 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
               129                280 
[1] "18Q GAIN MUTATION ANALYSIS"
[1] 3
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                97                312 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                97                312 
[1] "19P GAIN MUTATION ANALYSIS"
[1] 3
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                91                318 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                91                318 
[1] "19Q GAIN MUTATION ANALYSIS"
[1] 3
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
               130                279 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
               130                279 
[1] "20P GAIN MUTATION ANALYSIS"
[1] 3
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
               210                199 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
               210                199 
[1] "20Q GAIN MUTATION ANALYSIS"
[1] 3
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
               199                210 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
               199                210 
[1] "21Q GAIN MUTATION ANALYSIS"
[1] 3
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                46                363 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                46                363 
[1] "22Q GAIN MUTATION ANALYSIS"
[1] 3
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
               184                225 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
               184                225 
[1] "XQ GAIN MUTATION ANALYSIS"
[1] 3
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
               63               346 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
               63               346 
[1] "1P LOSS MUTATION ANALYSIS"
[1] 3
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
              121               288 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
              121               288 
[1] "1Q LOSS MUTATION ANALYSIS"
[1] 3
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
               48               361 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
               48               361 
[1] "2P LOSS MUTATION ANALYSIS"
[1] 3
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
               16               393 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
               16               393 
[1] "2Q LOSS MUTATION ANALYSIS"
[1] 3
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
               31               378 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
               31               378 
[1] "3P LOSS MUTATION ANALYSIS"
[1] 3
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
              253               156 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
              253               156 
[1] "3Q LOSS MUTATION ANALYSIS"
[1] 3
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               61               348 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               61               348 
[1] "4P LOSS MUTATION ANALYSIS"
[1] 3
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
              255               154 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
              255               154 
[1] "4Q LOSS MUTATION ANALYSIS"
[1] 3
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
              238               171 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
              238               171 
[1] "5P LOSS MUTATION ANALYSIS"
[1] 3
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
               63               346 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
               63               346 
[1] "5Q LOSS MUTATION ANALYSIS"
[1] 3
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
              239               170 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
              239               170 
[1] "6P LOSS MUTATION ANALYSIS"
[1] 3
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               92               317 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               92               317 
[1] "6Q LOSS MUTATION ANALYSIS"
[1] 3
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               95               314 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               95               314 
[1] "7P LOSS MUTATION ANALYSIS"
[1] 3
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
               50               359 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
               50               359 
[1] "7Q LOSS MUTATION ANALYSIS"
[1] 3
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
               45               364 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
               45               364 
[1] "8P LOSS MUTATION ANALYSIS"
[1] 3
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
              198               211 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
              198               211 
[1] "8Q LOSS MUTATION ANALYSIS"
[1] 3
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
               37               372 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
               37               372 
[1] "9P LOSS MUTATION ANALYSIS"
[1] 3
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
              256               153 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
              256               153 
[1] "9Q LOSS MUTATION ANALYSIS"
[1] 3
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
              195               214 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
              195               214 
[1] "10P LOSS MUTATION ANALYSIS"
[1] 3
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
               177                232 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
               177                232 
[1] "10Q LOSS MUTATION ANALYSIS"
[1] 3
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
               186                223 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
               186                223 
[1] "11P LOSS MUTATION ANALYSIS"
[1] 3
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
               141                268 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
               141                268 
[1] "11Q LOSS MUTATION ANALYSIS"
[1] 3
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
               117                292 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
               117                292 
[1] "12P LOSS MUTATION ANALYSIS"
[1] 3
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                31                378 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                31                378 
[1] "12Q LOSS MUTATION ANALYSIS"
[1] 3
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                38                371 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                38                371 
[1] "13Q LOSS MUTATION ANALYSIS"
[1] 3
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
               246                163 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
               246                163 
[1] "14Q LOSS MUTATION ANALYSIS"
[1] 3
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
               138                271 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
               138                271 
[1] "15Q LOSS MUTATION ANALYSIS"
[1] 3
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
               109                300 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
               109                300 
[1] "16P LOSS MUTATION ANALYSIS"
[1] 3
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
               126                283 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
               126                283 
[1] "16Q LOSS MUTATION ANALYSIS"
[1] 3
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
               145                264 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
               145                264 
[1] "17P LOSS MUTATION ANALYSIS"
[1] 3
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
               234                175 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
               234                175 
[1] "17Q LOSS MUTATION ANALYSIS"
[1] 3
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                76                333 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                76                333 
[1] "18P LOSS MUTATION ANALYSIS"
[1] 3
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
               108                301 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
               108                301 
[1] "18Q LOSS MUTATION ANALYSIS"
[1] 3
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
               144                265 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
               144                265 
[1] "19P LOSS MUTATION ANALYSIS"
[1] 3
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
               136                273 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
               136                273 
[1] "19Q LOSS MUTATION ANALYSIS"
[1] 3
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                89                320 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                89                320 
[1] "20P LOSS MUTATION ANALYSIS"
[1] 3
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                37                372 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                37                372 
[1] "20Q LOSS MUTATION ANALYSIS"
[1] 3
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                41                368 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                41                368 
[1] "21Q LOSS MUTATION ANALYSIS"
[1] 3
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
               217                192 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
               217                192 
[1] "22Q LOSS MUTATION ANALYSIS"
[1] 3
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                75                334 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                75                334 
[1] "XQ LOSS MUTATION ANALYSIS"
[1] 3
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
               87               322 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
               87               322 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection="
 [1] "YEARSTOBIRTH"                          
 [2] "VITALSTATUS"                           
 [3] "DAYSTODEATH"                           
 [4] "DAYSTOLASTFOLLOWUP"                    
 [5] "PRIMARYSITEOFDESEASE"                  
 [6] "NEOPLASM.DISEASESTAGE"                 
 [7] "PATHOLOGY.T.STAGE"                     
 [8] "PATHOLOGY.N.STAGE"                     
 [9] "PATHOLOGY.M.STAGE"                     
[10] "DCCUPLOADDATE"                         
[11] "GENDER"                                
[12] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
[13] "DAYSTOLASTKNOWNALIVE"                  
[14] "RADIATIONTHERAPY"                      
[15] "KARNOFSKYPERFORMANCESCORE"             
[16] "HISTOLOGICALTYPE"                      
[17] "RADIATIONS.RADIATION.REGIMENINDICATION"
[18] "NUMBERPACKYEARSSMOKED"                 
[19] "YEAROFTOBACCOSMOKINGONSET"             
[20] "COMPLETENESS.OF.RESECTION"             
[21] "GLEASON_SCORE"                         
[22] "PSA_VALUE"                             
[23] "DAYS_TO_PSA"                           
[24] "BATCHNUMBER"                           

Input Data has 24 rows and 409 columns.

[1] "Batch" "24"   
[1] "Last Follow UP"
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
         370          136         2464         2417          146         1415 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
         345          396         1810          862          758           50 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
        1331          187           85         2754           92          827 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 
        3636         1426         3016         2134         1852         1058 
TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 
         474          965         3724          284         3644          267 
TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-21-A5DI 
         962           NA         1268         1032          329          979 
TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 
         608          223           NA          131         1953           53 
TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 
         429          822         1485          623         1067         1470 
TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 
         734           17         1161         1057          399           NA 
TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
         587           NA          358          965         1975         1933 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 
         445         1346           24         1651         2170           NA 
TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 
         357          573          916         1912         1713          506 
TCGA-22-A5C4 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 
          29         2524         3469         2979         1311         5287 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 
        3149         4299          428           NA          329           NA 
TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 
         822           80         1874          958          881         1000 
TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
         951         1528         2062         1715           NA          707 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 
         365          428          941          552           NA           NA 
TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 
         120           13           12          200          247          227 
TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 
         238          207           12          103         1454         2253 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
        1361         2086           NA         2130         1849           52 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 
         740           59          833         1107          474         1084 
TCGA-39-5037 TCGA-39-5039 TCGA-39-5040 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 
        1086          544           NA         1223          684         1176 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 
         822         1007          349          549          376          757 
TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 
         310           NA           NA          212          236         2023 
TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 TCGA-43-A474 TCGA-43-A475 TCGA-43-A56U 
         407          358           NA          353          296          432 
TCGA-43-A56V TCGA-46-3765 TCGA-46-3766 TCGA-46-3767 TCGA-46-3768 TCGA-46-3769 
         366           NA           NA           NA           NA           NA 
TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 
         324          423           12           12          911          541 
TCGA-52-7809 TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 
          NA          923           NA           NA          881            3 
TCGA-56-5898 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 
         555           62           26           30           13           30 
TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 TCGA-56-7731 TCGA-56-7822 
          44           40           26            6           NA            1 
TCGA-56-8503 TCGA-56-8504 TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 
          41          178           55           36           63           17 
TCGA-56-8628 TCGA-56-8629 TCGA-56-A49D TCGA-56-A4BW TCGA-56-A4BX TCGA-56-A4BY 
          16           34           38            2           46           30 
TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DR TCGA-56-A5DS TCGA-58-8386 TCGA-58-8387 
          25            4            4            8           NA           NA 
TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 TCGA-58-8393 TCGA-58-A46J 
         378          911         2167           NA         1058         1973 
TCGA-58-A46K TCGA-58-A46L TCGA-58-A46M TCGA-58-A46N TCGA-60-2695 TCGA-60-2696 
          NA         1113          707          540          642          109 
TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 
          NA          311           NA           NA         2820          661 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 
        2447         1505         2024         1260          274         1731 
TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
        1531         1075         1475         1297           97          983 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-63-5128 
         908         1092          717          816          358           NA 
TCGA-63-5131 TCGA-63-6202 TCGA-63-7020 TCGA-63-7021 TCGA-63-7022 TCGA-63-7023 
          NA           NA           NA           NA           NA           NA 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 
          NA         1311           61          641           30           31 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 
          61           28           30           30          639          762 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 
          30           61           31           61           61           NA 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
         700          578           NA           61          578           NA 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 
         121           NA          759           60          790         1217 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 
         699           NA          699           NA          913           NA 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 
        1645          122         1492           83          202          211 
TCGA-68-8250 TCGA-68-8251 TCGA-68-A59I TCGA-68-A59J TCGA-70-6722 TCGA-70-6723 
         244           96          121          104           NA           NA 
TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 
          NA           NA           NA           NA           NA         2737 
TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 
          NA           15         1286           NA           NA           NA 
TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 TCGA-77-8128 
          NA          479           NA           NA         1641           NA 
TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 
        2522           NA           NA           NA           NA         3166 
TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 
          NA           NA          833           NA          293           NA 
TCGA-77-8153 TCGA-77-8154 TCGA-77-8156 TCGA-77-A5FZ TCGA-77-A5G3 TCGA-77-A5GB 
        1684         1092           10           NA         3576           NA 
TCGA-77-A5GH TCGA-79-5596 TCGA-85-6175 TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 
         713           NA           NA           11          395           34 
TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7710 TCGA-85-7843 
          18           10           49            1           NA           35 
TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 
          38           60           26           60           16          510 
TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 TCGA-85-8288 
         428          513           13           11           44           54 
TCGA-85-8350 TCGA-85-8351 TCGA-85-8352 TCGA-85-8353 TCGA-85-8354 TCGA-85-8355 
          60           55           67           54           61           61 
TCGA-85-8479 TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 TCGA-85-8584 TCGA-85-8664 
          22           21          445          424           NA            3 
TCGA-85-8666 TCGA-85-A4CL TCGA-85-A4CN TCGA-85-A4JB TCGA-85-A4JC TCGA-85-A4PA 
         475           15           NA           NA           NA           NA 
TCGA-85-A4QQ TCGA-85-A4QR TCGA-85-A50M TCGA-85-A50Z TCGA-85-A510 TCGA-85-A511 
          NA           25           19           NA           NA           NA 
TCGA-85-A512 TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 
          NA           24           13          758          289           89 
TCGA-90-7769 TCGA-90-7964 TCGA-90-A4ED TCGA-90-A4EE TCGA-92-7340 TCGA-92-7341 
         358          428          244          331           82          106 
TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 
         122          160           70           87           NA          356 
TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 TCGA-96-A4JK TCGA-96-A4JL 
        1213         1344          189          211          273          183 
TCGA-98-7454 TCGA-98-8020 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 TCGA-J1-A4AH 
         256           NA          413          224          308          222 
TCGA-L3-A4E7 TCGA-L3-A524 TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HG 
          35          449           36           83         1722         1548 
TCGA-NC-A5HI 
        1135 
Variable 1:'AGE':	nDistinctValues=45,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 3:'DAYSTODEATH':	nDistinctValues=136,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'DAYSTOLASTFOLLOWUP':	nDistinctValues=259,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 5:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'NEOPLASM.DISEASESTAGE':	nDistinctValues=9,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'PATHOLOGY.T.STAGE':	nDistinctValues=8,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'PATHOLOGY.N.STAGE':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'PATHOLOGY.M.STAGE':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'DCCUPLOADDAY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 11:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=19,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 13:'DAYSTOLASTKNOWNALIVE':	nDistinctValues=127,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 14:'RADIATION.THERAPY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 15:'KARNOFSKY.PERFORMANCE.SCORE':	nDistinctValues=8,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 16:'HISTOLOGICAL.TYPE':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 17:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 18:'NUMBERPACKYEARSSMOKED':	nDistinctValues=95,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 19:'YEAROFTOBACCOSMOKINGONSET':	nDistinctValues=54,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 20:'COMPLETENESS.OF.RESECTION':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 21:'GLEASON_SCORE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 22:'PSA_VALUE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 23:'DAYS_TO_PSA':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 24:'BATCH.NUMBER':	nDistinctValues=32,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
 [1] "AGE"                                   
 [2] "NEOPLASM.DISEASESTAGE"                 
 [3] "PATHOLOGY.T.STAGE"                     
 [4] "PATHOLOGY.N.STAGE"                     
 [5] "PATHOLOGY.M.STAGE"                     
 [6] "GENDER"                                
 [7] "KARNOFSKY.PERFORMANCE.SCORE"           
 [8] "HISTOLOGICAL.TYPE"                     
 [9] "RADIATIONS.RADIATION.REGIMENINDICATION"
[10] "NUMBERPACKYEARSSMOKED"                 
[11] "YEAROFTOBACCOSMOKINGONSET"             
[12] "COMPLETENESS.OF.RESECTION"             
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T" "3"          
[1] "PATHOLOGY.N" "4"          
Output Data has 409 columns, 1 survival variables, and 12 non-survival variables.
AGE, nv=45, binary=FALSE, numeric=TRUE
NEOPLASM.DISEASESTAGE, nv=9, binary=FALSE, numeric=FALSE
PATHOLOGY.T.STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.T',vnm)"
vv
 T1  T2  T3  T4 
 95 250  45  19 
[1] "table(vv)"
vv
 T1  T2  T3  T4 
 95 250  45  19 
$ClinVariableName
[1] "PATHOLOGY.T.STAGE"

$Table
vv
 T1  T2  T3  T4 
 95 250  45  19 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


 T1  T2  T3  T4 
 95 250  45  19 
PATHOLOGY.N.STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.N',vnm)"
vv
 N0  N1  N2  N3 
255 109  34   5 
[1] "table(vv)"
vv
 N0  N1  N2  N3 
255 109  34   5 
$ClinVariableName
[1] "PATHOLOGY.N.STAGE"

$Table
vv
 N0  N1  N2  N3 
255 109  34   5 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


 N0  N1  N2  N3 
255 109  34   5 
PATHOLOGY.M.STAGE, nv=3, binary=FALSE, numeric=FALSE
GENDER, nv=2, binary=FALSE, numeric=FALSE
KARNOFSKY.PERFORMANCE.SCORE, nv=8, binary=FALSE, numeric=TRUE
HISTOLOGICAL.TYPE, nv=4, binary=FALSE, numeric=FALSE
RADIATIONS.RADIATION.REGIMENINDICATION, nv=2, binary=FALSE, numeric=FALSE
NUMBERPACKYEARSSMOKED, nv=95, binary=FALSE, numeric=TRUE
YEAROFTOBACCOSMOKINGONSET, nv=54, binary=FALSE, numeric=TRUE
COMPLETENESS.OF.RESECTION, nv=4, binary=FALSE, numeric=FALSE

Clustering(1) Variable = 1P GAIN MUTATION ANALYSIS
D1V1, survival
                   sevent
clus2                 0   1
  1P GAIN MUTATED    48  25
  1P GAIN WILD-TYPE 196 114
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               73               310 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               25               114 
$`1P GAIN MUTATED`
TCGA-18-3414 TCGA-21-1070 TCGA-21-1081 TCGA-21-1082 TCGA-21-5787 TCGA-22-1011 
       13.02       119.54         9.34       119.80        10.82         1.74 
TCGA-22-1016 TCGA-22-5481 TCGA-22-5483 TCGA-33-4533 TCGA-33-4582 TCGA-33-6738 
       27.02        79.20        18.84       114.05       103.53        27.02 
TCGA-34-2608 TCGA-34-5231 TCGA-34-5240 TCGA-34-7107 TCGA-37-3792 TCGA-37-4130 
       32.88        50.24        12.00         1.12         0.39         8.12 
TCGA-37-4132 TCGA-37-4141 TCGA-39-5021 TCGA-39-5022 TCGA-39-5035 TCGA-39-5037 
        7.46         0.39        68.58        55.20        15.58        35.70 
TCGA-39-5040 TCGA-43-2578 TCGA-43-3920 TCGA-43-6143 TCGA-43-6770 TCGA-46-6025 
       17.06        22.49        33.11        12.36        10.19        10.65 
TCGA-52-7809 TCGA-52-7810 TCGA-56-8504 TCGA-58-A46K TCGA-58-A46N TCGA-60-2695 
        5.46        30.35         5.85        34.36        17.75        21.11 
TCGA-60-2708 TCGA-60-2719 TCGA-60-2722 TCGA-60-2723 TCGA-60-2725 TCGA-60-2726 
       80.45        42.64        29.85        35.90        26.83        11.77 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2755 TCGA-66-2759 TCGA-66-2763 TCGA-66-2771 
       43.10        21.07         0.92        25.05         0.99        19.00 
TCGA-66-2782 TCGA-66-2783 TCGA-68-8251 TCGA-68-A59I TCGA-77-7138 TCGA-77-7140 
       12.00        24.95         3.16         3.98        11.18        20.78 
TCGA-77-7141 TCGA-77-7338 TCGA-77-8145 TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6560 
        0.49         0.16         6.97        30.81        23.44         0.36 
TCGA-85-6798 TCGA-85-7699 TCGA-85-7844 TCGA-85-8072 TCGA-85-A4CL TCGA-85-A50M 
        1.12         0.03         1.25        16.87         0.49         0.62 
TCGA-90-7964 TCGA-90-A4ED TCGA-92-8064 TCGA-94-7557 TCGA-96-8169 TCGA-J1-A4AH 
       14.07         8.02         5.26         0.16         6.21         7.30 
TCGA-NC-A5HG 
       50.89 

$`1P GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.01        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       11.34        59.51        28.34        24.92         1.64        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1071 
        6.15         2.79        90.54         3.02        27.19        46.88 
TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 
       99.16        70.16        60.89        34.78        15.58        31.73 
TCGA-21-1080 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 
      122.43         8.78        31.63        88.11        41.69        33.93 
TCGA-21-A5DI TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 
       32.19        19.99         7.33        14.93         4.31        64.21 
TCGA-22-1012 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 
       14.10        48.82        20.48        35.08        48.33        24.13 
TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 
        0.56        38.17        34.75        13.12        32.02        19.30 
TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
        9.57        11.77        31.73        64.93        63.55        14.63 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       44.25         0.79        54.28        71.34        11.74        30.12 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-22-A5C4 TCGA-33-4532 TCGA-33-4538 
       62.86        56.32        16.64         0.95         7.63        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 
       43.10       173.82       141.34        14.07        54.44        10.82 
TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2609 
       19.76         2.63        61.61        31.50        28.96        31.27 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5241 TCGA-34-5927 
       67.79        56.38         9.07        23.24        14.07        30.94 
TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4129 TCGA-37-4133 
       18.15         4.96         3.95         0.43         6.58         7.82 
TCGA-37-4135 TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5024 
        6.81         3.39        47.80        74.07        44.75        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 
       60.79         1.71        24.33         1.94        27.39        36.39 
TCGA-39-5036 TCGA-39-5039 TCGA-43-2576 TCGA-43-2581 TCGA-43-3394 TCGA-43-5668 
       35.64        17.88        40.21        38.66        27.02        11.47 
TCGA-43-5670 TCGA-43-6647 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 
       18.05        24.89         5.46         3.81         6.97         7.76 
TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 TCGA-43-A474 TCGA-43-A475 
       66.51        13.38        11.77         2.93        11.61         9.73 
TCGA-43-A56U TCGA-43-A56V TCGA-46-3768 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
       14.20        12.03         9.99        13.91         0.39         0.39 
TCGA-51-4081 TCGA-52-7622 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 
       29.95        17.79         8.75        27.45        28.96         0.10 
TCGA-56-5898 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 
       18.25         2.04         0.62         0.99         0.43         0.99 
TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 TCGA-56-8503 
        1.45         1.32         0.85         0.20         0.03         1.35 
TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 
        1.81         1.18         2.07         0.56         0.53         1.12 
TCGA-56-A49D TCGA-56-A4BW TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A4ZK 
        1.25         0.07         1.51         0.99         0.82         0.13 
TCGA-56-A5DR TCGA-56-A5DS TCGA-58-8386 TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 
        0.13         0.26         0.03        13.25        12.43        29.95 
TCGA-58-8391 TCGA-58-8392 TCGA-58-8393 TCGA-58-A46J TCGA-58-A46L TCGA-58-A46M 
       71.24        16.47        34.78        64.87        36.59        23.24 
TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 
        3.58        12.23        10.22        96.82        37.94        92.71 
TCGA-60-2707 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 
       21.73        49.48        66.54        41.42         9.01        56.91 
TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2720 TCGA-60-2721 TCGA-60-2724 
       50.33        35.34        48.49         3.19        32.32        23.57 
TCGA-66-2727 TCGA-66-2737 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2756 
       16.96         2.01         0.99         1.02         2.01         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
        0.99        21.01         2.01         1.02         2.01         2.01 
TCGA-66-2769 TCGA-66-2770 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
        7.07        23.01         3.02         2.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
        3.98         1.97        25.97        40.01        22.98         4.04 
TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
       22.98         5.03        30.02        10.06        54.08         4.01 
TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 TCGA-68-A59J 
       49.05         2.73         6.64         6.94         8.02         3.42 
TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7139 TCGA-77-7142 
       29.56        73.12        75.09        23.28        89.98        42.28 
TCGA-77-7335 TCGA-77-7337 TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 TCGA-77-8008 
       70.13       106.95        46.78        15.75         6.51        86.76 
TCGA-77-8009 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 
       53.95        37.81        82.92        12.59        53.92        39.09 
TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 TCGA-77-8148 
       17.72       104.09        11.54        26.40        27.39         9.63 
TCGA-77-8150 TCGA-77-8153 TCGA-77-8154 TCGA-77-8156 TCGA-77-A5FZ TCGA-77-A5G3 
       54.41        55.36        35.90         0.33       126.18       117.57 
TCGA-85-6175 TCGA-85-6561 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7843 
        9.67        12.99         0.59         0.33         1.61         1.15 
TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 
        1.97         0.85         1.97         0.53        16.77        14.07 
TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 TCGA-85-8288 TCGA-85-8350 TCGA-85-8351 
        0.43         0.36         1.45         1.78         1.97         1.81 
TCGA-85-8352 TCGA-85-8353 TCGA-85-8354 TCGA-85-8355 TCGA-85-8479 TCGA-85-8481 
        2.20         1.78         2.01         2.01         0.72         0.69 
TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 TCGA-85-8666 TCGA-85-A4QR TCGA-85-A513 
       14.63        13.94         0.10        15.62         0.82         0.79 
TCGA-85-A53L TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 TCGA-90-A4EE 
        0.43        24.92         9.50         2.93        11.77        10.88 
TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8065 TCGA-94-7033 TCGA-94-7943 
        2.70         3.48         4.01         2.30         2.86        11.70 
TCGA-96-7544 TCGA-96-7545 TCGA-96-8170 TCGA-96-A4JK TCGA-96-A4JL TCGA-98-7454 
       39.88        44.19         6.94         8.98         6.02         8.42 
TCGA-98-8020 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 TCGA-L3-A4E7 TCGA-L3-A524 
        2.76        13.58         7.36        10.13         1.15        14.76 
TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HI 
        1.18         2.73        56.61        37.32 

  1P GAIN MUTATED 1P GAIN WILD-TYPE 
             0.03              0.03 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
           119.80            173.82 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
           14.070            13.315 
[1] "0.0 - 119.8 (14.1)" "0.0 - 173.8 (13.3)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
[1] "hr=" "1"  
D1V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  1P GAIN MUTATED         0        9       34        1         8        11
  1P GAIN WILD-TYPE       1       60      102        0        42        59
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  1P GAIN MUTATED            9          3        3
  1P GAIN WILD-TYPE         45         17        2
D1V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  1P GAIN MUTATED    16  53   5   4
  1P GAIN WILD-TYPE  79 197  40  15
D1V4, multiclass
    clus
vv   1P GAIN MUTATED 1P GAIN WILD-TYPE
  T1              16                79
  T2              53               197
  T3               5                40
  T4               4                15
                   vv
clus                 N0  N1  N2  N3
  1P GAIN MUTATED    52  18   6   1
  1P GAIN WILD-TYPE 203  91  28   4
D1V5, multiclass
    clus
vv   1P GAIN MUTATED 1P GAIN WILD-TYPE
  N0              52               203
  N1              18                91
  N2               6                28
  N3               1                 4
                   vv
clus                 M0  M1  MX
  1P GAIN MUTATED    68   3   7
  1P GAIN WILD-TYPE 281   2  42
D1V6, multiclass
    clus
vv   1P GAIN MUTATED 1P GAIN WILD-TYPE
  M0              68               281
  M1               3                 2
  MX               7                42
D1V7, binary
                   cls
clus                  0   1
  1P GAIN MUTATED    20  58
  1P GAIN WILD-TYPE  84 247
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P GAIN MUTATED     20   58
  1P GAIN WILD-TYPE   84  247
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  FEMALE              20                84
  MALE                58               247
D1V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  1P GAIN MUTATED                                       7
  1P GAIN WILD-TYPE                                     5
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  1P GAIN MUTATED                                        0
  1P GAIN WILD-TYPE                                      6
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  1P GAIN MUTATED                                         0
  1P GAIN WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  1P GAIN MUTATED                                                            71
  1P GAIN WILD-TYPE                                                         319
D1V9, multiclass
                                                             clus
vv                                                            1P GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     7
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    0
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              71
                                                             clus
vv                                                            1P GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       5
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      6
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               319
D1V10, binary
                   cls
clus                  0   1
  1P GAIN MUTATED     2  76
  1P GAIN WILD-TYPE  11 320
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P GAIN MUTATED      2   76
  1P GAIN WILD-TYPE   11  320
     clus
vv    1P GAIN MUTATED 1P GAIN WILD-TYPE
  NO                2                11
  YES              76               320
D1V11, continuous
D1V12, continuous
                   vv
clus                 R0  R1  R2  RX
  1P GAIN MUTATED    61   3   1   3
  1P GAIN WILD-TYPE 271   5   3  15
D1V13, multiclass
    clus
vv   1P GAIN MUTATED 1P GAIN WILD-TYPE
  R0              61               271
  R1               3                 5
  R2               1                 3
  RX               3                15

Clustering(2) Variable = 1Q GAIN MUTATION ANALYSIS
D2V1, survival
                   sevent
clus2                 0   1
  1Q GAIN MUTATED   106  56
  1Q GAIN WILD-TYPE 138  83
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
              162               221 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
               56                83 
$`1Q GAIN MUTATED`
TCGA-18-3406 TCGA-18-3408 TCGA-18-3411 TCGA-18-3414 TCGA-18-3415 TCGA-18-3417 
       12.16        81.01        46.52        13.02        59.51        24.92 
TCGA-18-5592 TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1077 
        3.02       119.54        46.88        99.16        70.16        34.78 
TCGA-21-1081 TCGA-21-1082 TCGA-21-5784 TCGA-21-5787 TCGA-22-0940 TCGA-22-1011 
        9.34       119.80        41.69        10.82        19.99         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4594 TCGA-22-4596 
       14.10        27.02        48.82        20.48        48.33         0.56 
TCGA-22-4599 TCGA-22-4607 TCGA-22-5473 TCGA-22-5474 TCGA-22-5479 TCGA-22-5480 
       38.17        19.30        63.55        14.63        54.28        71.34 
TCGA-22-5481 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-A5C4 TCGA-33-4533 
       79.20        18.84        30.12        62.86         0.95       114.05 
TCGA-33-4538 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 
       97.94       173.82       103.53       141.34        14.07        54.44 
TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5239 
       27.02         2.63        61.61        32.88        50.24        23.24 
TCGA-34-5240 TCGA-34-5928 TCGA-34-7107 TCGA-37-3783 TCGA-37-3792 TCGA-37-4132 
       12.00        18.15         1.12         3.95         0.39         7.46 
TCGA-37-4133 TCGA-37-4141 TCGA-39-5016 TCGA-39-5021 TCGA-39-5022 TCGA-39-5035 
        7.82         0.39        74.07        68.58        55.20        15.58 
TCGA-39-5037 TCGA-39-5040 TCGA-43-2578 TCGA-43-2581 TCGA-43-3920 TCGA-43-6143 
       35.70        17.06        22.49        38.66        33.11        12.36 
TCGA-43-6770 TCGA-43-7657 TCGA-43-A475 TCGA-46-6025 TCGA-51-4080 TCGA-52-7622 
       10.19         7.76         9.73        10.65         0.39        17.79 
TCGA-52-7809 TCGA-52-7810 TCGA-56-7223 TCGA-56-7582 TCGA-56-8504 TCGA-56-8622 
        5.46        30.35         0.99         0.85         5.85         1.81 
TCGA-56-A4BX TCGA-56-A5DR TCGA-58-8388 TCGA-58-8393 TCGA-58-A46K TCGA-58-A46M 
        1.51         0.13        12.43        34.78        34.36        23.24 
TCGA-58-A46N TCGA-60-2695 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2722 
       17.75        21.11        10.22        21.73        80.45        29.85 
TCGA-60-2723 TCGA-60-2725 TCGA-60-2726 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 
       35.90        26.83        11.77        43.10         2.01        21.07 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2770 
        0.92         0.99        21.01        25.05         0.99        23.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
       19.00         3.02         2.01         3.98        12.00        24.95 
TCGA-66-2785 TCGA-66-2787 TCGA-68-8251 TCGA-68-A59I TCGA-68-A59J TCGA-77-6843 
        1.97        40.01         3.16         3.98         3.42        73.12 
TCGA-77-6845 TCGA-77-7138 TCGA-77-7140 TCGA-77-7141 TCGA-77-7338 TCGA-77-7463 
       23.28        11.18        20.78         0.49         0.16        46.78 
TCGA-77-7465 TCGA-77-8008 TCGA-77-8009 TCGA-77-8145 TCGA-77-8148 TCGA-77-8156 
       15.75        86.76        53.95         6.97         9.63         0.33 
TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6560 TCGA-85-6798 TCGA-85-7696 TCGA-85-7699 
       30.81        23.44         0.36         1.12         0.59         0.03 
TCGA-85-7844 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8072 
        1.25         0.85         1.97         0.53        16.77        16.87 
TCGA-85-8277 TCGA-85-8351 TCGA-85-8352 TCGA-85-8353 TCGA-85-8664 TCGA-85-8666 
        0.36         1.81         2.20         1.78         0.10        15.62 
TCGA-85-A4CL TCGA-85-A50M TCGA-90-7767 TCGA-90-7964 TCGA-90-A4ED TCGA-90-A4EE 
        0.49         0.62         2.93        14.07         8.02        10.88 
TCGA-92-7340 TCGA-92-7341 TCGA-92-8064 TCGA-94-7557 TCGA-94-7943 TCGA-96-8169 
        2.70         3.48         5.26         0.16        11.70         6.21 
TCGA-96-A4JL TCGA-J1-A4AH TCGA-L3-A524 TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HG 
        6.02         7.30        14.76         2.73        56.61        50.89 

$`1Q GAIN WILD-TYPE`
TCGA-18-3407 TCGA-18-3409 TCGA-18-3410 TCGA-18-3412 TCGA-18-3416 TCGA-18-3419 
        4.47        79.46         4.80        11.34        28.34         1.64 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5595 TCGA-21-1076 
       43.76         6.15         2.79        90.54        27.19        60.89 
TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 
       15.58        31.73       122.43         8.78        31.63        88.11 
TCGA-21-5786 TCGA-21-A5DI TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 
       33.93        32.19         7.33        14.93         4.31        64.21 
TCGA-22-4593 TCGA-22-4595 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4609 
       35.08        24.13        34.75        13.12        32.02         9.57 
TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5477 TCGA-22-5478 TCGA-22-5482 
       11.77        31.73        64.93        44.25         0.79        11.74 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4547 TCGA-33-4589 TCGA-33-6737 
       56.32        16.64         7.63        43.10        10.82        19.76 
TCGA-34-2604 TCGA-34-2605 TCGA-34-2609 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       31.50        28.96        31.27        67.79        56.38         9.07 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5929 TCGA-37-3789 TCGA-37-4129 TCGA-37-4130 
       14.07        30.94         4.96         0.43         6.58         8.12 
TCGA-37-4135 TCGA-37-5819 TCGA-39-5011 TCGA-39-5019 TCGA-39-5024 TCGA-39-5027 
        6.81         3.39        47.80        44.75        70.03        60.79 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5036 
        1.71        24.33         1.94        27.39        36.39        35.64 
TCGA-39-5039 TCGA-43-2576 TCGA-43-3394 TCGA-43-5668 TCGA-43-5670 TCGA-43-6647 
       17.88        40.21        27.02        11.47        18.05        24.89 
TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 
        5.46         3.81         6.97        66.51        13.38        11.77 
TCGA-43-8118 TCGA-43-A474 TCGA-43-A56U TCGA-43-A56V TCGA-46-3768 TCGA-46-6026 
        2.93        11.61        14.20        12.03         9.99        13.91 
TCGA-51-4079 TCGA-51-4081 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 
        0.39        29.95         8.75        27.45        28.96         0.10 
TCGA-56-5898 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7579 
       18.25         2.04         0.62         0.99         0.43         1.45 
TCGA-56-7580 TCGA-56-7730 TCGA-56-7822 TCGA-56-8503 TCGA-56-8624 TCGA-56-8625 
        1.32         0.20         0.03         1.35         1.18         2.07 
TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 TCGA-56-A49D TCGA-56-A4BW TCGA-56-A4BY 
        0.56         0.53         1.12         1.25         0.07         0.99 
TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DS TCGA-58-8386 TCGA-58-8387 TCGA-58-8390 
        0.82         0.13         0.26         0.03        13.25        29.95 
TCGA-58-8391 TCGA-58-8392 TCGA-58-A46J TCGA-58-A46L TCGA-60-2696 TCGA-60-2697 
       71.24        16.47        64.87        36.59         3.58        12.23 
TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       96.82        37.94        92.71        49.48        66.54        41.42 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 
        9.01        56.91        50.33        35.34        48.49        42.64 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2724 TCGA-66-2727 TCGA-66-2744 TCGA-66-2753 
        3.19        32.32        23.57        16.96         0.99         1.02 
TCGA-66-2754 TCGA-66-2757 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
        2.01         0.99         2.01         1.02         2.01         2.01 
TCGA-66-2769 TCGA-66-2778 TCGA-66-2780 TCGA-66-2786 TCGA-66-2788 TCGA-66-2789 
        7.07        19.00        12.03        25.97        22.98         4.04 
TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
       22.98         5.03        30.02        10.06        54.08         4.01 
TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 TCGA-77-6842 
       49.05         2.73         6.64         6.94         8.02        29.56 
TCGA-77-6844 TCGA-77-7139 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-8007 
       75.09        89.98        42.28        70.13       106.95         6.51 
TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 
       37.81        82.92        12.59        53.92        39.09        17.72 
TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 TCGA-77-8150 TCGA-77-8153 
      104.09        11.54        26.40        27.39        54.41        55.36 
TCGA-77-8154 TCGA-77-A5FZ TCGA-77-A5G3 TCGA-85-6175 TCGA-85-6561 TCGA-85-7697 
       35.90       126.18       117.57         9.67        12.99         0.33 
TCGA-85-7698 TCGA-85-7843 TCGA-85-7950 TCGA-85-8071 TCGA-85-8276 TCGA-85-8287 
        1.61         1.15         1.97        14.07         0.43         1.45 
TCGA-85-8288 TCGA-85-8350 TCGA-85-8354 TCGA-85-8355 TCGA-85-8479 TCGA-85-8481 
        1.78         1.97         2.01         2.01         0.72         0.69 
TCGA-85-8580 TCGA-85-8582 TCGA-85-A4QR TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 
       14.63        13.94         0.82         0.79         0.43        24.92 
TCGA-90-7766 TCGA-90-7769 TCGA-92-8063 TCGA-92-8065 TCGA-94-7033 TCGA-96-7544 
        9.50        11.77         4.01         2.30         2.86        39.88 
TCGA-96-7545 TCGA-96-8170 TCGA-96-A4JK TCGA-98-7454 TCGA-98-8020 TCGA-98-8021 
       44.19         6.94         8.98         8.42         2.76        13.58 
TCGA-98-8022 TCGA-98-8023 TCGA-L3-A4E7 TCGA-LA-A446 TCGA-NC-A5HI 
        7.36        10.13         1.15         1.18        37.32 

  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
             0.03              0.03 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
           173.82            126.18 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
           14.695            12.590 
[1] "0.0 - 173.8 (14.7)" "0.0 - 126.2 (12.6)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D2V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  1Q GAIN MUTATED         0       22       68        1        18        28
  1Q GAIN WILD-TYPE       1       47       68        0        32        42
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  1Q GAIN MUTATED           22          7        4
  1Q GAIN WILD-TYPE         32         13        1
D2V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  1Q GAIN MUTATED    31 111  20   8
  1Q GAIN WILD-TYPE  64 139  25  11
D2V4, multiclass
    clus
vv   1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  T1              31                64
  T2             111               139
  T3              20                25
  T4               8                11
                   vv
clus                 N0  N1  N2  N3
  1Q GAIN MUTATED   108  47  12   1
  1Q GAIN WILD-TYPE 147  62  22   4
D2V5, multiclass
    clus
vv   1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  N0             108               147
  N1              47                62
  N2              12                22
  N3               1                 4
                   vv
clus                 M0  M1  MX
  1Q GAIN MUTATED   146   4  19
  1Q GAIN WILD-TYPE 203   1  30
D2V6, multiclass
    clus
vv   1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  M0             146               203
  M1               4                 1
  MX              19                30
D2V7, binary
                   cls
clus                  0   1
  1Q GAIN MUTATED    40 130
  1Q GAIN WILD-TYPE  64 175
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q GAIN MUTATED     40  130
  1Q GAIN WILD-TYPE   64  175
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  FEMALE              40                64
  MALE               130               175
D2V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  1Q GAIN MUTATED                                      10
  1Q GAIN WILD-TYPE                                     2
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  1Q GAIN MUTATED                                        0
  1Q GAIN WILD-TYPE                                      6
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  1Q GAIN MUTATED                                         1
  1Q GAIN WILD-TYPE                                       0
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  1Q GAIN MUTATED                                                           159
  1Q GAIN WILD-TYPE                                                         231
D2V9, multiclass
                                                             clus
vv                                                            1Q GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    10
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    0
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             159
                                                             clus
vv                                                            1Q GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       2
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      6
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               231
D2V10, binary
                   cls
clus                  0   1
  1Q GAIN MUTATED     2 168
  1Q GAIN WILD-TYPE  11 228
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q GAIN MUTATED      2  168
  1Q GAIN WILD-TYPE   11  228
     clus
vv    1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  NO                2                11
  YES             168               228
D2V11, continuous
D2V12, continuous
                   vv
clus                 R0  R1  R2  RX
  1Q GAIN MUTATED   142   5   1   6
  1Q GAIN WILD-TYPE 190   3   3  12
D2V13, multiclass
    clus
vv   1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  R0             142               190
  R1               5                 3
  R2               1                 3
  RX               6                12

Clustering(3) Variable = 2P GAIN MUTATION ANALYSIS
D3V1, survival
                   sevent
clus2                 0   1
  2P GAIN MUTATED   109  56
  2P GAIN WILD-TYPE 135  83
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
              165               218 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               56                83 
$`2P GAIN MUTATED`
TCGA-18-3409 TCGA-18-3411 TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3417 
       79.46        46.52        11.34        13.02        59.51        24.92 
TCGA-18-3419 TCGA-18-3421 TCGA-21-1072 TCGA-21-1076 TCGA-21-1079 TCGA-21-1081 
        1.64        43.76        99.16        60.89        31.73         9.34 
TCGA-21-1083 TCGA-21-5783 TCGA-21-5786 TCGA-21-A5DI TCGA-22-4591 TCGA-22-4595 
        8.78        88.11        33.93        32.19        20.48        24.13 
TCGA-22-4599 TCGA-22-4604 TCGA-22-4605 TCGA-22-5471 TCGA-22-5473 TCGA-22-5474 
       38.17        13.12        32.02        31.73        63.55        14.63 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5483 TCGA-22-5489 
       44.25         0.79        54.28        71.34        18.84        62.86 
TCGA-22-5491 TCGA-22-A5C4 TCGA-33-4532 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 
       56.32         0.95         7.63       173.82       103.53       141.34 
TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-5231 
       27.02         2.63        61.61        31.50        28.96        50.24 
TCGA-34-5236 TCGA-34-5240 TCGA-34-5241 TCGA-34-5928 TCGA-34-7107 TCGA-37-3792 
        9.07        12.00        14.07        18.15         1.12         0.39 
TCGA-37-4130 TCGA-37-4133 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5027 
        8.12         7.82        47.80        74.07        44.75        60.79 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5040 TCGA-43-2576 TCGA-43-2581 
       15.58        35.64        35.70        17.06        40.21        38.66 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 TCGA-43-7658 
       27.02        33.11        11.47        18.05        12.36        66.51 
TCGA-43-8115 TCGA-46-3768 TCGA-46-6025 TCGA-51-4080 TCGA-52-7809 TCGA-52-7810 
       13.38         9.99        10.65         0.39         5.46        30.35 
TCGA-52-7811 TCGA-56-5898 TCGA-56-6546 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 
        8.75        18.25         0.62         0.43         0.99         1.45 
TCGA-56-7582 TCGA-56-7730 TCGA-56-8504 TCGA-56-8628 TCGA-56-8629 TCGA-56-A4BW 
        0.85         0.20         5.85         0.53         1.12         0.07 
TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A5DS TCGA-58-8391 TCGA-58-8392 TCGA-58-A46K 
        1.51         0.99         0.26        71.24        16.47        34.36 
TCGA-58-A46L TCGA-58-A46M TCGA-58-A46N TCGA-60-2698 TCGA-60-2703 TCGA-60-2708 
       36.59        23.24        17.75        10.22        96.82        80.45 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2719 TCGA-60-2724 TCGA-60-2726 TCGA-66-2737 
       41.42         9.01        42.64        23.57        11.77         2.01 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2767 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 
       21.01        25.05         2.01        23.01        19.00         3.02 
TCGA-66-2777 TCGA-66-2787 TCGA-66-2789 TCGA-66-2792 TCGA-66-2793 TCGA-66-2795 
        2.01        40.01         4.04        30.02        10.06         4.01 
TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-A59I TCGA-77-6842 TCGA-77-6845 
       49.05         2.73         6.64         3.98        29.56        23.28 
TCGA-77-7138 TCGA-77-7139 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 
       11.18        89.98         0.49        42.28        70.13       106.95 
TCGA-77-8009 TCGA-77-8130 TCGA-77-8136 TCGA-77-8139 TCGA-77-8148 TCGA-77-8150 
       53.95        82.92        39.09       104.09         9.63        54.41 
TCGA-77-8156 TCGA-77-A5GH TCGA-85-6175 TCGA-85-6560 TCGA-85-6798 TCGA-85-7696 
        0.33        23.44         9.67         0.36         1.12         0.59 
TCGA-85-7843 TCGA-85-7844 TCGA-85-8052 TCGA-85-8070 TCGA-85-8072 TCGA-85-8277 
        1.15         1.25         0.53        16.77        16.87         0.36 
TCGA-85-8350 TCGA-85-8354 TCGA-85-8664 TCGA-85-8666 TCGA-85-A4QR TCGA-85-A50M 
        1.97         2.01         0.10        15.62         0.82         0.62 
TCGA-90-7767 TCGA-90-7769 TCGA-90-7964 TCGA-90-A4EE TCGA-92-7341 TCGA-94-7557 
        2.93        11.77        14.07        10.88         3.48         0.16 
TCGA-94-7943 TCGA-96-7545 TCGA-96-8169 TCGA-96-A4JK TCGA-98-7454 TCGA-J1-A4AH 
       11.70        44.19         6.21         8.98         8.42         7.30 
TCGA-L3-A524 TCGA-MF-A522 TCGA-NC-A5HG 
       14.76         2.73        50.89 

$`2P GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3416 TCGA-18-4083 
       12.16         4.47        81.01         4.80        28.34         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.54         3.02        27.19       119.54        46.88 
TCGA-21-1075 TCGA-21-1077 TCGA-21-1078 TCGA-21-1080 TCGA-21-1082 TCGA-21-5782 
       70.16        34.78        15.58       122.43       119.80        31.63 
TCGA-21-5784 TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 
       41.69        10.82        19.99         7.33        14.93         4.31 
TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4593 
       64.21         1.74        14.10        27.02        48.82        35.08 
TCGA-22-4594 TCGA-22-4596 TCGA-22-4601 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 
       48.33         0.56        34.75        19.30         9.57        11.77 
TCGA-22-5472 TCGA-22-5481 TCGA-22-5482 TCGA-22-5485 TCGA-22-5492 TCGA-33-4533 
       64.93        79.20        11.74        30.12        16.64       114.05 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 
       97.94        43.10        14.07        54.44        10.82        19.76 
TCGA-34-2608 TCGA-34-2609 TCGA-34-5232 TCGA-34-5234 TCGA-34-5239 TCGA-34-5927 
       32.88        31.27        67.79        56.38        23.24        30.94 
TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4129 TCGA-37-4132 TCGA-37-4135 
        4.96         3.95         0.43         6.58         7.46         6.81 
TCGA-37-4141 TCGA-37-5819 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 
        0.39         3.39        68.58        55.20        70.03         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5039 TCGA-43-2578 
       24.33         1.94        27.39        36.39        17.88        22.49 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 
       24.89        10.19         5.46         3.81         6.97         7.76 
TCGA-43-8116 TCGA-43-8118 TCGA-43-A474 TCGA-43-A475 TCGA-43-A56U TCGA-43-A56V 
       11.77         2.93        11.61         9.73        14.20        12.03 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4081 TCGA-52-7622 TCGA-52-7812 TCGA-56-1622 
       13.91         0.39        29.95        17.79        27.45        28.96 
TCGA-56-5897 TCGA-56-6545 TCGA-56-7221 TCGA-56-7580 TCGA-56-7822 TCGA-56-8503 
        0.10         2.04         0.99         1.32         0.03         1.35 
TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 TCGA-56-A49D TCGA-56-A4ZJ 
        1.81         1.18         2.07         0.56         1.25         0.82 
TCGA-56-A4ZK TCGA-56-A5DR TCGA-58-8386 TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 
        0.13         0.13         0.03        13.25        12.43        29.95 
TCGA-58-8393 TCGA-58-A46J TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2704 
       34.78        64.87        21.11         3.58        12.23        37.94 
TCGA-60-2706 TCGA-60-2707 TCGA-60-2709 TCGA-60-2710 TCGA-60-2713 TCGA-60-2714 
       92.71        21.73        49.48        66.54        56.91        50.33 
TCGA-60-2715 TCGA-60-2716 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
       35.34        48.49         3.19        32.32        29.85        35.90 
TCGA-60-2725 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 
       26.83        16.96        43.10        21.07         0.99         1.02 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2763 TCGA-66-2765 
        2.01         0.92         0.99         0.99         0.99         2.01 
TCGA-66-2766 TCGA-66-2768 TCGA-66-2769 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
        1.02         2.01         7.07        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2788 TCGA-66-2790 
       12.00        24.95         1.97        25.97        22.98        22.98 
TCGA-66-2791 TCGA-66-2794 TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 TCGA-68-A59J 
        5.03        54.08         6.94         8.02         3.16         3.42 
TCGA-77-6843 TCGA-77-6844 TCGA-77-7140 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 
       73.12        75.09        20.78         0.16        46.78        15.75 
TCGA-77-8007 TCGA-77-8008 TCGA-77-8128 TCGA-77-8131 TCGA-77-8133 TCGA-77-8138 
        6.51        86.76        37.81        12.59        53.92        17.72 
TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 TCGA-77-8153 TCGA-77-8154 
       11.54        26.40        27.39         6.97        55.36        35.90 
TCGA-77-A5FZ TCGA-77-A5G3 TCGA-77-A5GB TCGA-85-6561 TCGA-85-7697 TCGA-85-7698 
      126.18       117.57        30.81        12.99         0.33         1.61 
TCGA-85-7699 TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 TCGA-85-8071 TCGA-85-8276 
        0.03         1.97         0.85         1.97        14.07         0.43 
TCGA-85-8287 TCGA-85-8288 TCGA-85-8351 TCGA-85-8352 TCGA-85-8353 TCGA-85-8355 
        1.45         1.78         1.81         2.20         1.78         2.01 
TCGA-85-8479 TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 TCGA-85-A4CL TCGA-85-A513 
        0.72         0.69        14.63        13.94         0.49         0.79 
TCGA-85-A53L TCGA-90-6837 TCGA-90-7766 TCGA-90-A4ED TCGA-92-7340 TCGA-92-8063 
        0.43        24.92         9.50         8.02         2.70         4.01 
TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-96-7544 TCGA-96-8170 TCGA-96-A4JL 
        5.26         2.30         2.86        39.88         6.94         6.02 
TCGA-98-8020 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 TCGA-L3-A4E7 TCGA-LA-A446 
        2.76        13.58         7.36        10.13         1.15         1.18 
TCGA-NC-A5HE TCGA-NC-A5HI 
       56.61        37.32 

  2P GAIN MUTATED 2P GAIN WILD-TYPE 
             0.07              0.03 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
           173.82            126.18 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
           15.580            12.195 
[1] "0.1 - 173.8 (15.6)" "0.0 - 126.2 (12.2)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D3V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  2P GAIN MUTATED         1       22       56        1        24        33
  2P GAIN WILD-TYPE       0       47       80        0        26        37
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  2P GAIN MUTATED           24         10        2
  2P GAIN WILD-TYPE         30         10        3
D3V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  2P GAIN MUTATED    35 106  24  10
  2P GAIN WILD-TYPE  60 144  21   9
D3V4, multiclass
    clus
vv   2P GAIN MUTATED 2P GAIN WILD-TYPE
  T1              35                60
  T2             106               144
  T3              24                21
  T4              10                 9
                   vv
clus                 N0  N1  N2  N3
  2P GAIN MUTATED   103  57  12   2
  2P GAIN WILD-TYPE 152  52  22   3
D3V5, multiclass
    clus
vv   2P GAIN MUTATED 2P GAIN WILD-TYPE
  N0             103               152
  N1              57                52
  N2              12                22
  N3               2                 3
                   vv
clus                 M0  M1  MX
  2P GAIN MUTATED   150   2  20
  2P GAIN WILD-TYPE 199   3  29
D3V6, multiclass
    clus
vv   2P GAIN MUTATED 2P GAIN WILD-TYPE
  M0             150               199
  M1               2                 3
  MX              20                29
D3V7, binary
                   cls
clus                  0   1
  2P GAIN MUTATED    33 142
  2P GAIN WILD-TYPE  71 163
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P GAIN MUTATED     33  142
  2P GAIN WILD-TYPE   71  163
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  FEMALE              33                71
  MALE               142               163
D3V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  2P GAIN MUTATED                                      10
  2P GAIN WILD-TYPE                                     2
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  2P GAIN MUTATED                                        1
  2P GAIN WILD-TYPE                                      5
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  2P GAIN MUTATED                                         0
  2P GAIN WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  2P GAIN MUTATED                                                           164
  2P GAIN WILD-TYPE                                                         226
D3V9, multiclass
                                                             clus
vv                                                            2P GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    10
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             164
                                                             clus
vv                                                            2P GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       2
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               226
D3V10, binary
                   cls
clus                  0   1
  2P GAIN MUTATED     8 167
  2P GAIN WILD-TYPE   5 229
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P GAIN MUTATED      8  167
  2P GAIN WILD-TYPE    5  229
     clus
vv    2P GAIN MUTATED 2P GAIN WILD-TYPE
  NO                8                 5
  YES             167               229
D3V11, continuous
D3V12, continuous
                   vv
clus                 R0  R1  R2  RX
  2P GAIN MUTATED   146   1   1   5
  2P GAIN WILD-TYPE 186   7   3  13
D3V13, multiclass
    clus
vv   2P GAIN MUTATED 2P GAIN WILD-TYPE
  R0             146               186
  R1               1                 7
  R2               1                 3
  RX               5                13

Clustering(4) Variable = 2Q GAIN MUTATION ANALYSIS
D4V1, survival
                   sevent
clus2                 0   1
  2Q GAIN MUTATED    69  42
  2Q GAIN WILD-TYPE 175  97
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
              111               272 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               42                97 
$`2Q GAIN MUTATED`
TCGA-18-3409 TCGA-18-3411 TCGA-18-3412 TCGA-18-3414 TCGA-21-1072 TCGA-21-1081 
       79.46        46.52        11.34        13.02        99.16         9.34 
TCGA-21-1083 TCGA-21-A5DI TCGA-22-4595 TCGA-22-4605 TCGA-22-5474 TCGA-22-5477 
        8.78        32.19        24.13        32.02        14.63        44.25 
TCGA-22-5480 TCGA-22-5483 TCGA-22-5489 TCGA-22-5491 TCGA-33-4532 TCGA-33-4566 
       71.34        18.84        62.86        56.32         7.63       173.82 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4587 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 
      103.53       141.34        54.44        27.02         2.63        61.61 
TCGA-34-2604 TCGA-34-2605 TCGA-34-5236 TCGA-34-5240 TCGA-34-5241 TCGA-34-7107 
       31.50        28.96         9.07        12.00        14.07         1.12 
TCGA-37-3792 TCGA-37-4130 TCGA-37-4133 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 
        0.39         8.12         7.82        47.80        74.07        44.75 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5040 TCGA-43-2576 TCGA-43-2581 
       15.58        35.64        35.70        17.06        40.21        38.66 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 TCGA-46-3768 
       27.02        33.11        11.47        18.05        12.36         9.99 
TCGA-51-4080 TCGA-52-7809 TCGA-52-7810 TCGA-52-7811 TCGA-56-5898 TCGA-56-6546 
        0.39         5.46        30.35         8.75        18.25         0.62 
TCGA-56-7222 TCGA-56-7223 TCGA-56-7582 TCGA-56-7730 TCGA-56-8504 TCGA-56-8629 
        0.43         0.99         0.85         0.20         5.85         1.12 
TCGA-56-A4BX TCGA-56-A5DS TCGA-58-8391 TCGA-58-A46M TCGA-58-A46N TCGA-60-2703 
        1.51         0.26        71.24        23.24        17.75        96.82 
TCGA-60-2708 TCGA-60-2711 TCGA-60-2712 TCGA-60-2719 TCGA-60-2726 TCGA-66-2759 
       80.45        41.42         9.01        42.64        11.77        25.05 
TCGA-66-2770 TCGA-66-2773 TCGA-66-2792 TCGA-66-2793 TCGA-68-7755 TCGA-68-7756 
       23.01         3.02        30.02        10.06         2.73         6.64 
TCGA-77-6842 TCGA-77-6845 TCGA-77-7139 TCGA-77-7142 TCGA-77-8009 TCGA-77-8130 
       29.56        23.28        89.98        42.28        53.95        82.92 
TCGA-77-8139 TCGA-77-8145 TCGA-77-8150 TCGA-77-8156 TCGA-77-A5G3 TCGA-77-A5GH 
      104.09         6.97        54.41         0.33       117.57        23.44 
TCGA-85-6175 TCGA-85-6560 TCGA-85-7843 TCGA-85-7844 TCGA-85-8070 TCGA-85-8277 
        9.67         0.36         1.15         1.25        16.77         0.36 
TCGA-85-8287 TCGA-85-8350 TCGA-85-8354 TCGA-85-8666 TCGA-85-A4QR TCGA-85-A50M 
        1.45         1.97         2.01        15.62         0.82         0.62 
TCGA-90-7769 TCGA-90-7964 TCGA-90-A4EE TCGA-92-7341 TCGA-94-7557 TCGA-96-7545 
       11.77        14.07        10.88         3.48         0.16        44.19 
TCGA-J1-A4AH TCGA-MF-A522 TCGA-NC-A5HG 
        7.30         2.73        50.89 

$`2Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3415 TCGA-18-3416 
       12.16         4.47        81.01         4.80        59.51        28.34 
TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 
       24.92         1.64        43.76         6.15         2.79        90.54 
TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1075 TCGA-21-1076 
        3.02        27.19       119.54        46.88        70.16        60.89 
TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 TCGA-21-1082 TCGA-21-5782 
       34.78        15.58        31.73       122.43       119.80        31.63 
TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 
       88.11        41.69        33.93        10.82        19.99         7.33 
TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 
       14.93         4.31        64.21         1.74        14.10        27.02 
TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4596 TCGA-22-4599 
       48.82        20.48        35.08        48.33         0.56        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 
       34.75        13.12        19.30         9.57        11.77        31.73 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5478 TCGA-22-5479 TCGA-22-5481 TCGA-22-5482 
       64.93        63.55         0.79        54.28        79.20        11.74 
TCGA-22-5485 TCGA-22-5492 TCGA-22-A5C4 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       30.12        16.64         0.95       114.05        97.94        43.10 
TCGA-33-4586 TCGA-33-4589 TCGA-33-6737 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 
       14.07        10.82        19.76        32.88        31.27        50.24 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5239 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       67.79        56.38        23.24        30.94        18.15         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4129 TCGA-37-4132 TCGA-37-4135 TCGA-37-4141 
        3.95         0.43         6.58         7.46         6.81         0.39 
TCGA-37-5819 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
        3.39        68.58        55.20        70.03        60.79         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5039 TCGA-43-2578 
       24.33         1.94        27.39        36.39        17.88        22.49 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 
       24.89        10.19         5.46         3.81         6.97         7.76 
TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 TCGA-43-A474 TCGA-43-A475 
       66.51        13.38        11.77         2.93        11.61         9.73 
TCGA-43-A56U TCGA-43-A56V TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4081 
       14.20        12.03        10.65        13.91         0.39        29.95 
TCGA-52-7622 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-7221 
       17.79        27.45        28.96         0.10         2.04         0.99 
TCGA-56-7579 TCGA-56-7580 TCGA-56-7822 TCGA-56-8503 TCGA-56-8622 TCGA-56-8624 
        1.45         1.32         0.03         1.35         1.81         1.18 
TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 TCGA-56-A49D TCGA-56-A4BW TCGA-56-A4BY 
        2.07         0.56         0.53         1.25         0.07         0.99 
TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DR TCGA-58-8386 TCGA-58-8387 TCGA-58-8388 
        0.82         0.13         0.13         0.03        13.25        12.43 
TCGA-58-8390 TCGA-58-8392 TCGA-58-8393 TCGA-58-A46J TCGA-58-A46K TCGA-58-A46L 
       29.95        16.47        34.78        64.87        34.36        36.59 
TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2704 TCGA-60-2706 
       21.11         3.58        12.23        10.22        37.94        92.71 
TCGA-60-2707 TCGA-60-2709 TCGA-60-2710 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 
       21.73        49.48        66.54        56.91        50.33        35.34 
TCGA-60-2716 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 
       48.49         3.19        32.32        29.85        35.90        23.57 
TCGA-60-2725 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 
       26.83        16.96        43.10         2.01        21.07         0.99 
TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 
        1.02         2.01         0.92         0.99         0.99        21.01 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 
        0.99         2.01         1.02         2.01         2.01         7.07 
TCGA-66-2771 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
       19.00         2.01        19.00        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       24.95         1.97        25.97        40.01        22.98         4.04 
TCGA-66-2790 TCGA-66-2791 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7757 
       22.98         5.03        54.08         4.01        49.05         6.94 
TCGA-68-8250 TCGA-68-8251 TCGA-68-A59I TCGA-68-A59J TCGA-77-6843 TCGA-77-6844 
        8.02         3.16         3.98         3.42        73.12        75.09 
TCGA-77-7138 TCGA-77-7140 TCGA-77-7141 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 
       11.18        20.78         0.49        70.13       106.95         0.16 
TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 TCGA-77-8008 TCGA-77-8128 TCGA-77-8131 
       46.78        15.75         6.51        86.76        37.81        12.59 
TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 
       53.92        39.09        17.72        11.54        26.40        27.39 
TCGA-77-8148 TCGA-77-8153 TCGA-77-8154 TCGA-77-A5FZ TCGA-77-A5GB TCGA-85-6561 
        9.63        55.36        35.90       126.18        30.81        12.99 
TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7950 
        1.12         0.59         0.33         1.61         0.03         1.97 
TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 
        0.85         1.97         0.53        14.07        16.87         0.43 
TCGA-85-8288 TCGA-85-8351 TCGA-85-8352 TCGA-85-8353 TCGA-85-8355 TCGA-85-8479 
        1.78         1.81         2.20         1.78         2.01         0.72 
TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 TCGA-85-A4CL TCGA-85-A513 
        0.69        14.63        13.94         0.10         0.49         0.79 
TCGA-85-A53L TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-A4ED TCGA-92-7340 
        0.43        24.92         9.50         2.93         8.02         2.70 
TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7943 TCGA-96-7544 
        4.01         5.26         2.30         2.86        11.70        39.88 
TCGA-96-8169 TCGA-96-8170 TCGA-96-A4JK TCGA-96-A4JL TCGA-98-7454 TCGA-98-8020 
        6.21         6.94         8.98         6.02         8.42         2.76 
TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 TCGA-L3-A4E7 TCGA-L3-A524 TCGA-LA-A446 
       13.58         7.36        10.13         1.15        14.76         1.18 
TCGA-NC-A5HE TCGA-NC-A5HI 
       56.61        37.32 

  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
             0.16              0.03 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
           173.82            126.18 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
            15.62             12.51 
[1] "0.2 - 173.8 (15.6)" "0.0 - 126.2 (12.5)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D4V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  2Q GAIN MUTATED         1       14       38        1        18        21
  2Q GAIN WILD-TYPE       0       55       98        0        32        49
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  2Q GAIN MUTATED           14          5        1
  2Q GAIN WILD-TYPE         40         15        4
D4V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  2Q GAIN MUTATED    24  72  12   7
  2Q GAIN WILD-TYPE  71 178  33  12
D4V4, multiclass
    clus
vv   2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  T1              24                71
  T2              72               178
  T3              12                33
  T4               7                12
                   vv
clus                 N0  N1  N2  N3
  2Q GAIN MUTATED    71  36   8   0
  2Q GAIN WILD-TYPE 184  73  26   5
D4V5, multiclass
    clus
vv   2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  N0              71               184
  N1              36                73
  N2               8                26
  N3               0                 5
                   vv
clus                 M0  M1  MX
  2Q GAIN MUTATED    95   1  16
  2Q GAIN WILD-TYPE 254   4  33
D4V6, multiclass
    clus
vv   2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  M0              95               254
  M1               1                 4
  MX              16                33
D4V7, binary
                   cls
clus                  0   1
  2Q GAIN MUTATED    23  92
  2Q GAIN WILD-TYPE  81 213
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q GAIN MUTATED     23   92
  2Q GAIN WILD-TYPE   81  213
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  FEMALE              23                81
  MALE                92               213
D4V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  2Q GAIN MUTATED                                       8
  2Q GAIN WILD-TYPE                                     4
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  2Q GAIN MUTATED                                        1
  2Q GAIN WILD-TYPE                                      5
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  2Q GAIN MUTATED                                         1
  2Q GAIN WILD-TYPE                                       0
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  2Q GAIN MUTATED                                                           105
  2Q GAIN WILD-TYPE                                                         285
D4V9, multiclass
                                                             clus
vv                                                            2Q GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     8
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             105
                                                             clus
vv                                                            2Q GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       4
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               285
D4V10, binary
                   cls
clus                  0   1
  2Q GAIN MUTATED     6 109
  2Q GAIN WILD-TYPE   7 287
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q GAIN MUTATED      6  109
  2Q GAIN WILD-TYPE    7  287
     clus
vv    2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  NO                6                 7
  YES             109               287
D4V11, continuous
D4V12, continuous
                   vv
clus                 R0  R1  R2  RX
  2Q GAIN MUTATED    95   1   0   2
  2Q GAIN WILD-TYPE 237   7   4  16
D4V13, multiclass
    clus
vv   2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  R0              95               237
  R1               1                 7
  R2               0                 4
  RX               2                16

Clustering(5) Variable = 3P GAIN MUTATION ANALYSIS
D5V1, survival
                   sevent
clus2                 0   1
  3P GAIN MUTATED    43  39
  3P GAIN WILD-TYPE 201 100
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               82               301 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               39               100 
$`3P GAIN MUTATED`
TCGA-18-3410 TCGA-18-3414 TCGA-21-1080 TCGA-21-1081 TCGA-22-1000 TCGA-22-1002 
        4.80        13.02       122.43         9.34        14.93         4.31 
TCGA-22-4593 TCGA-22-4595 TCGA-22-4601 TCGA-22-5477 TCGA-22-5485 TCGA-22-5489 
       35.08        24.13        34.75        44.25        30.12        62.86 
TCGA-22-5491 TCGA-33-4533 TCGA-33-4538 TCGA-33-4582 TCGA-33-4586 TCGA-34-2609 
       56.32       114.05        97.94       103.53        14.07        31.27 
TCGA-34-5232 TCGA-34-5236 TCGA-34-5240 TCGA-34-5241 TCGA-34-5928 TCGA-34-7107 
       67.79         9.07        12.00        14.07        18.15         1.12 
TCGA-37-3783 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5029 TCGA-39-5030 
        3.95        44.75        68.58        55.20        24.33         1.94 
TCGA-39-5037 TCGA-39-5040 TCGA-43-3394 TCGA-43-5670 TCGA-43-6771 TCGA-43-A56V 
       35.70        17.06        27.02        18.05         5.46        12.03 
TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-52-7810 TCGA-56-5898 TCGA-56-7223 
        9.99        10.65        13.91        30.35        18.25         0.99 
TCGA-56-7730 TCGA-56-A49D TCGA-56-A4BW TCGA-56-A4ZK TCGA-56-A5DR TCGA-58-8393 
        0.20         1.25         0.07         0.13         0.13        34.78 
TCGA-58-A46J TCGA-58-A46K TCGA-58-A46M TCGA-60-2703 TCGA-60-2706 TCGA-60-2713 
       64.87        34.36        23.24        96.82        92.71        56.91 
TCGA-60-2715 TCGA-66-2727 TCGA-66-2756 TCGA-66-2766 TCGA-66-2771 TCGA-66-2773 
       35.34        16.96         0.99         1.02        19.00         3.02 
TCGA-66-2777 TCGA-77-7140 TCGA-77-8008 TCGA-77-8009 TCGA-77-8136 TCGA-77-8145 
        2.01        20.78        86.76        53.95        39.09         6.97 
TCGA-77-8150 TCGA-77-A5GB TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-8049 
       54.41        30.81        12.99         1.12         0.59         1.97 
TCGA-85-8350 TCGA-85-8352 TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 TCGA-94-7033 
        1.97         2.20        14.63        13.94         0.10         2.86 
TCGA-94-7943 TCGA-96-7545 TCGA-98-8020 TCGA-J1-A4AH 
       11.70        44.19         2.76         7.30 

$`3P GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.01        79.46        46.52        11.34 
TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 
       59.51        28.34        24.92         1.64        43.76         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.54         3.02        27.19       119.54        46.88 
TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 
       99.16        70.16        60.89        34.78        15.58        31.73 
TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 
      119.80         8.78        31.63        88.11        41.69        33.93 
TCGA-21-5787 TCGA-21-A5DI TCGA-22-0940 TCGA-22-0944 TCGA-22-1005 TCGA-22-1011 
       10.82        32.19        19.99         7.33        64.21         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4594 TCGA-22-4596 
       14.10        27.02        48.82        20.48        48.33         0.56 
TCGA-22-4599 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 
       38.17        13.12        32.02        19.30         9.57        11.77 
TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5478 TCGA-22-5479 
       31.73        64.93        63.55        14.63         0.79        54.28 
TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-22-5492 TCGA-22-A5C4 
       71.34        79.20        11.74        18.84        16.64         0.95 
TCGA-33-4532 TCGA-33-4547 TCGA-33-4566 TCGA-33-4583 TCGA-33-4587 TCGA-33-4589 
        7.63        43.10       173.82       141.34        54.44        10.82 
TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 
       19.76        27.02         2.63        61.61        31.50        28.96 
TCGA-34-2608 TCGA-34-5231 TCGA-34-5234 TCGA-34-5239 TCGA-34-5927 TCGA-34-5929 
       32.88        50.24        56.38        23.24        30.94         4.96 
TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 
        0.43         0.39         6.58         8.12         7.46         7.82 
TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5024 
        6.81         0.39         3.39        47.80        74.07        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 
       60.79         1.71        27.39        36.39        15.58        35.64 
TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-3920 TCGA-43-5668 
       17.88        40.21        22.49        38.66        33.11        11.47 
TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 
       12.36        24.89        10.19         3.81         6.97         7.76 
TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 TCGA-43-A474 TCGA-43-A475 
       66.51        13.38        11.77         2.93        11.61         9.73 
TCGA-43-A56U TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 
       14.20         0.39         0.39        29.95        17.79         5.46 
TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        8.75        27.45        28.96         0.10         2.04         0.62 
TCGA-56-7221 TCGA-56-7222 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-56-7822 
        0.99         0.43         1.45         1.32         0.85         0.03 
TCGA-56-8503 TCGA-56-8504 TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 
        1.35         5.85         1.81         1.18         2.07         0.56 
TCGA-56-8628 TCGA-56-8629 TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A5DS 
        0.53         1.12         1.51         0.99         0.82         0.26 
TCGA-58-8386 TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 
        0.03        13.25        12.43        29.95        71.24        16.47 
TCGA-58-A46L TCGA-58-A46N TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 
       36.59        17.75        21.11         3.58        12.23        10.22 
TCGA-60-2704 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       37.94        21.73        80.45        49.48        66.54        41.42 
TCGA-60-2712 TCGA-60-2714 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
        9.01        50.33        48.49        42.64         3.19        32.32 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2734 
       29.85        35.90        23.57        26.83        11.77        43.10 
TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 
        2.01        21.07         0.99         1.02         2.01         0.92 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2767 
        0.99        21.01        25.05         0.99         2.01         2.01 
TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
        2.01         7.07        23.01        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
       12.00        24.95         1.97        25.97        40.01        22.98 
TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
        4.04        22.98         5.03        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 
        4.01        49.05         2.73         6.64         6.94         8.02 
TCGA-68-8251 TCGA-68-A59I TCGA-68-A59J TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 
        3.16         3.98         3.42        29.56        73.12        75.09 
TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 
       23.28        11.18        89.98         0.49        42.28        70.13 
TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 TCGA-77-8128 
      106.95         0.16        46.78        15.75         6.51        37.81 
TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 
       82.92        12.59        53.92        17.72       104.09        11.54 
TCGA-77-8143 TCGA-77-8144 TCGA-77-8148 TCGA-77-8153 TCGA-77-8154 TCGA-77-8156 
       26.40        27.39         9.63        55.36        35.90         0.33 
TCGA-77-A5FZ TCGA-77-A5G3 TCGA-77-A5GH TCGA-85-6175 TCGA-85-6560 TCGA-85-7697 
      126.18       117.57        23.44         9.67         0.36         0.33 
TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 
        1.61         0.03         1.15         1.25         1.97         0.85 
TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 
        0.53        16.77        14.07        16.87         0.43         0.36 
TCGA-85-8287 TCGA-85-8288 TCGA-85-8351 TCGA-85-8353 TCGA-85-8354 TCGA-85-8355 
        1.45         1.78         1.81         1.78         2.01         2.01 
TCGA-85-8479 TCGA-85-8481 TCGA-85-8666 TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A50M 
        0.72         0.69        15.62         0.49         0.82         0.62 
TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 
        0.79         0.43        24.92         9.50         2.93        11.77 
TCGA-90-7964 TCGA-90-A4ED TCGA-90-A4EE TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 
       14.07         8.02        10.88         2.70         3.48         4.01 
TCGA-92-8064 TCGA-92-8065 TCGA-94-7557 TCGA-96-7544 TCGA-96-8169 TCGA-96-8170 
        5.26         2.30         0.16        39.88         6.21         6.94 
TCGA-96-A4JK TCGA-96-A4JL TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
        8.98         6.02         8.42        13.58         7.36        10.13 
TCGA-L3-A4E7 TCGA-L3-A524 TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HG 
        1.15        14.76         1.18         2.73        56.61        50.89 
TCGA-NC-A5HI 
       37.32 

  3P GAIN MUTATED 3P GAIN WILD-TYPE 
             0.07              0.03 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
           122.43            173.82 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
           15.945            12.230 
[1] "0.1 - 122.4 (15.9)" "0.0 - 173.8 (12.2)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
  "3P GAIN MUTATED"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
  "3P GAIN MUTATED"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
  "3P GAIN MUTATED"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
  "3P GAIN MUTATED"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
  "3P GAIN MUTATED"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
  "3P GAIN MUTATED"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D5V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  3P GAIN MUTATED         0       17       22        1         8        17
  3P GAIN WILD-TYPE       1       52      114        0        42        53
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  3P GAIN MUTATED           19          3        1
  3P GAIN WILD-TYPE         35         17        4
D5V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  3P GAIN MUTATED    21  51  11   5
  3P GAIN WILD-TYPE  74 199  34  14
D5V4, multiclass
    clus
vv   3P GAIN MUTATED 3P GAIN WILD-TYPE
  T1              21                74
  T2              51               199
  T3              11                34
  T4               5                14
                   vv
clus                 N0  N1  N2  N3
  3P GAIN MUTATED    48  25  12   0
  3P GAIN WILD-TYPE 207  84  22   5
D5V5, multiclass
    clus
vv   3P GAIN MUTATED 3P GAIN WILD-TYPE
  N0              48               207
  N1              25                84
  N2              12                22
  N3               0                 5
                   vv
clus                 M0  M1  MX
  3P GAIN MUTATED    78   1   8
  3P GAIN WILD-TYPE 271   4  41
D5V6, multiclass
    clus
vv   3P GAIN MUTATED 3P GAIN WILD-TYPE
  M0              78               271
  M1               1                 4
  MX               8                41
D5V7, binary
                   cls
clus                  0   1
  3P GAIN MUTATED    17  71
  3P GAIN WILD-TYPE  87 234
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P GAIN MUTATED     17   71
  3P GAIN WILD-TYPE   87  234
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  FEMALE              17                87
  MALE                71               234
D5V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  3P GAIN MUTATED                                       2
  3P GAIN WILD-TYPE                                    10
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  3P GAIN MUTATED                                        0
  3P GAIN WILD-TYPE                                      6
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  3P GAIN MUTATED                                         0
  3P GAIN WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  3P GAIN MUTATED                                                            86
  3P GAIN WILD-TYPE                                                         304
D5V9, multiclass
                                                             clus
vv                                                            3P GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     2
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    0
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              86
                                                             clus
vv                                                            3P GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      10
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      6
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               304
D5V10, binary
                   cls
clus                  0   1
  3P GAIN MUTATED     4  84
  3P GAIN WILD-TYPE   9 312
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P GAIN MUTATED      4   84
  3P GAIN WILD-TYPE    9  312
     clus
vv    3P GAIN MUTATED 3P GAIN WILD-TYPE
  NO                4                 9
  YES              84               312
D5V11, continuous
D5V12, continuous
                   vv
clus                 R0  R1  R2  RX
  3P GAIN MUTATED    67   3   1   4
  3P GAIN WILD-TYPE 265   5   3  14
D5V13, multiclass
    clus
vv   3P GAIN MUTATED 3P GAIN WILD-TYPE
  R0              67               265
  R1               3                 5
  R2               1                 3
  RX               4                14

Clustering(6) Variable = 3Q GAIN MUTATION ANALYSIS
D6V1, survival
                   sevent
clus2                 0   1
  3Q GAIN MUTATED   153  88
  3Q GAIN WILD-TYPE  91  51
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
              241               142 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
               88                51 
$`3Q GAIN MUTATED`
TCGA-18-3407 TCGA-18-3409 TCGA-18-3410 TCGA-18-3414 TCGA-18-3417 TCGA-18-3419 
        4.47        79.46         4.80        13.02        24.92         1.64 
TCGA-18-3421 TCGA-18-4086 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 
       43.76         2.79        27.19       119.54        46.88        60.89 
TCGA-21-1077 TCGA-21-1080 TCGA-21-1081 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 
       34.78       122.43         9.34         8.78        31.63        88.11 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-21-A5DI TCGA-22-0940 TCGA-22-1000 
       41.69        33.93        10.82        32.19        19.99        14.93 
TCGA-22-1002 TCGA-22-1012 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
        4.31        14.10        20.48        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5472 
       34.75        32.02        19.30         9.57        11.77        64.93 
TCGA-22-5477 TCGA-22-5479 TCGA-22-5480 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 
       44.25        54.28        71.34        30.12        62.86        56.32 
TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 
        7.63       114.05        97.94        43.10       173.82       103.53 
TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 
       14.07        54.44        10.82         2.63        61.61        31.50 
TCGA-34-2608 TCGA-34-2609 TCGA-34-5232 TCGA-34-5236 TCGA-34-5240 TCGA-34-5241 
       32.88        31.27        67.79         9.07        12.00        14.07 
TCGA-34-5927 TCGA-34-5928 TCGA-34-7107 TCGA-37-3783 TCGA-37-4130 TCGA-37-4132 
       30.94        18.15         1.12         3.95         8.12         7.46 
TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 
        7.82         6.81         0.39         3.39        74.07        44.75 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
       68.58        55.20        70.03         1.71        24.33         1.94 
TCGA-39-5031 TCGA-39-5035 TCGA-39-5037 TCGA-39-5040 TCGA-43-2576 TCGA-43-2578 
       27.39        15.58        35.70        17.06        40.21        22.49 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5670 TCGA-43-6143 TCGA-43-6771 TCGA-43-7657 
       27.02        33.11        18.05        12.36         5.46         7.76 
TCGA-43-7658 TCGA-43-8118 TCGA-43-A56V TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
       66.51         2.93        12.03         9.99        10.65        13.91 
TCGA-51-4080 TCGA-51-4081 TCGA-52-7809 TCGA-52-7810 TCGA-56-5897 TCGA-56-5898 
        0.39        29.95         5.46        30.35         0.10        18.25 
TCGA-56-7223 TCGA-56-7580 TCGA-56-7730 TCGA-56-7822 TCGA-56-8504 TCGA-56-8624 
        0.99         1.32         0.20         0.03         5.85         1.18 
TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 TCGA-56-A49D TCGA-56-A4BW 
        2.07         0.56         0.53         1.12         1.25         0.07 
TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DR TCGA-56-A5DS TCGA-58-8386 
        0.99         0.82         0.13         0.13         0.26         0.03 
TCGA-58-8387 TCGA-58-8390 TCGA-58-8393 TCGA-58-A46J TCGA-58-A46K TCGA-58-A46M 
       13.25        29.95        34.78        64.87        34.36        23.24 
TCGA-58-A46N TCGA-60-2695 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 
       17.75        21.11        96.82        37.94        92.71        21.73 
TCGA-60-2708 TCGA-60-2710 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2721 
       80.45        66.54         9.01        56.91        35.34        32.32 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 
       35.90        23.57        11.77        16.96        43.10        21.07 
TCGA-66-2744 TCGA-66-2755 TCGA-66-2756 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        0.99         0.92         0.99        21.01        25.05         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 
        2.01         1.02         2.01        23.01        19.00         3.02 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2783 TCGA-66-2786 
        2.01        19.00        12.03         3.98        24.95        25.97 
TCGA-66-2787 TCGA-66-2789 TCGA-66-2790 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 
       40.01         4.04        22.98        49.05         2.73         6.64 
TCGA-68-8250 TCGA-68-8251 TCGA-77-6842 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 
        8.02         3.16        29.56        23.28        11.18        89.98 
TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7338 TCGA-77-7463 
       20.78         0.49        42.28        70.13         0.16        46.78 
TCGA-77-7465 TCGA-77-8008 TCGA-77-8009 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 
       15.75        86.76        53.95        53.92        39.09        17.72 
TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 
      104.09        11.54        26.40         6.97         9.63        54.41 
TCGA-77-A5G3 TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 
      117.57        30.81        23.44         0.36        12.99         1.12 
TCGA-85-7696 TCGA-85-7697 TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 TCGA-85-8049 
        0.59         0.33         1.15         1.25         1.97         1.97 
TCGA-85-8052 TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 TCGA-85-8288 
        0.53        16.87         0.43         0.36         1.45         1.78 
TCGA-85-8350 TCGA-85-8351 TCGA-85-8352 TCGA-85-8353 TCGA-85-8580 TCGA-85-8582 
        1.97         1.81         2.20         1.78        14.63        13.94 
TCGA-85-8664 TCGA-85-A4QR TCGA-90-7766 TCGA-90-7767 TCGA-90-7964 TCGA-90-A4EE 
        0.10         0.82         9.50         2.93        14.07        10.88 
TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7943 TCGA-96-7544 
        4.01         5.26         2.30         2.86        11.70        39.88 
TCGA-96-7545 TCGA-96-8170 TCGA-96-A4JK TCGA-98-8020 TCGA-98-8021 TCGA-98-8022 
       44.19         6.94         8.98         2.76        13.58         7.36 
TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-L3-A524 TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HG 
        7.30         1.15        14.76         1.18         2.73        50.89 
TCGA-NC-A5HI 
       37.32 

$`3Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3408 TCGA-18-3411 TCGA-18-3412 TCGA-18-3415 TCGA-18-3416 
       12.16        81.01        46.52        11.34        59.51        28.34 
TCGA-18-4083 TCGA-18-4721 TCGA-18-5592 TCGA-21-1072 TCGA-21-1075 TCGA-21-1078 
        6.15        90.54         3.02        99.16        70.16        15.58 
TCGA-21-1079 TCGA-21-1082 TCGA-22-0944 TCGA-22-1005 TCGA-22-1011 TCGA-22-1016 
       31.73       119.80         7.33        64.21         1.74        27.02 
TCGA-22-1017 TCGA-22-4594 TCGA-22-4596 TCGA-22-4604 TCGA-22-5471 TCGA-22-5473 
       48.82        48.33         0.56        13.12        31.73        63.55 
TCGA-22-5474 TCGA-22-5478 TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-22-5492 
       14.63         0.79        79.20        11.74        18.84        16.64 
TCGA-22-A5C4 TCGA-33-4583 TCGA-33-6737 TCGA-33-6738 TCGA-34-2605 TCGA-34-5231 
        0.95       141.34        19.76        27.02        28.96        50.24 
TCGA-34-5234 TCGA-34-5239 TCGA-34-5929 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 
       56.38        23.24         4.96         0.43         0.39         6.58 
TCGA-39-5011 TCGA-39-5027 TCGA-39-5034 TCGA-39-5036 TCGA-39-5039 TCGA-43-2581 
       47.80        60.79        36.39        35.64        17.88        38.66 
TCGA-43-5668 TCGA-43-6647 TCGA-43-6770 TCGA-43-6773 TCGA-43-7656 TCGA-43-8115 
       11.47        24.89        10.19         3.81         6.97        13.38 
TCGA-43-8116 TCGA-43-A474 TCGA-43-A475 TCGA-43-A56U TCGA-51-4079 TCGA-52-7622 
       11.77        11.61         9.73        14.20         0.39        17.79 
TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 
        8.75        27.45        28.96         2.04         0.62         0.99 
TCGA-56-7222 TCGA-56-7579 TCGA-56-7582 TCGA-56-8503 TCGA-56-8622 TCGA-56-A4BX 
        0.43         1.45         0.85         1.35         1.81         1.51 
TCGA-58-8388 TCGA-58-8391 TCGA-58-8392 TCGA-58-A46L TCGA-60-2696 TCGA-60-2697 
       12.43        71.24        16.47        36.59         3.58        12.23 
TCGA-60-2698 TCGA-60-2709 TCGA-60-2711 TCGA-60-2714 TCGA-60-2716 TCGA-60-2719 
       10.22        49.48        41.42        50.33        48.49        42.64 
TCGA-60-2720 TCGA-60-2722 TCGA-60-2725 TCGA-66-2737 TCGA-66-2753 TCGA-66-2754 
        3.19        29.85        26.83         2.01         1.02         2.01 
TCGA-66-2757 TCGA-66-2768 TCGA-66-2769 TCGA-66-2782 TCGA-66-2785 TCGA-66-2788 
        0.99         2.01         7.07        12.00         1.97        22.98 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-68-7757 
        5.03        30.02        10.06        54.08         4.01         6.94 
TCGA-68-A59I TCGA-68-A59J TCGA-77-6843 TCGA-77-6844 TCGA-77-7337 TCGA-77-8007 
        3.98         3.42        73.12        75.09       106.95         6.51 
TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8144 TCGA-77-8153 TCGA-77-8154 
       37.81        82.92        12.59        27.39        55.36        35.90 
TCGA-77-8156 TCGA-77-A5FZ TCGA-85-6175 TCGA-85-7698 TCGA-85-7699 TCGA-85-8048 
        0.33       126.18         9.67         1.61         0.03         0.85 
TCGA-85-8070 TCGA-85-8071 TCGA-85-8354 TCGA-85-8355 TCGA-85-8479 TCGA-85-8481 
       16.77        14.07         2.01         2.01         0.72         0.69 
TCGA-85-8666 TCGA-85-A4CL TCGA-85-A50M TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 
       15.62         0.49         0.62         0.79         0.43        24.92 
TCGA-90-7769 TCGA-90-A4ED TCGA-92-7340 TCGA-92-7341 TCGA-94-7557 TCGA-96-8169 
       11.77         8.02         2.70         3.48         0.16         6.21 
TCGA-96-A4JL TCGA-98-7454 TCGA-98-8023 TCGA-NC-A5HE 
        6.02         8.42        10.13        56.61 

  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
             0.03              0.03 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
           173.82            141.34 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
            14.07             12.08 
[1] "0.0 - 173.8 (14.1)" "0.0 - 141.3 (12.1)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
[1] "hr=" "1"  
D6V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  3Q GAIN MUTATED         1       46       84        1        27        43
  3Q GAIN WILD-TYPE       0       23       52        0        23        27
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  3Q GAIN MUTATED           37         12        5
  3Q GAIN WILD-TYPE         17          8        0
D6V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  3Q GAIN MUTATED    62 157  27  11
  3Q GAIN WILD-TYPE  33  93  18   8
D6V4, multiclass
    clus
vv   3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  T1              62                33
  T2             157                93
  T3              27                18
  T4              11                 8
                   vv
clus                 N0  N1  N2  N3
  3Q GAIN MUTATED   157  70  22   4
  3Q GAIN WILD-TYPE  98  39  12   1
D6V5, multiclass
    clus
vv   3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  N0             157                98
  N1              70                39
  N2              22                12
  N3               4                 1
                   vv
clus                 M0  M1  MX
  3Q GAIN MUTATED   218   5  32
  3Q GAIN WILD-TYPE 131   0  17
D6V6, multiclass
    clus
vv   3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  M0             218               131
  M1               5                 0
  MX              32                17
D6V7, binary
                   cls
clus                  0   1
  3Q GAIN MUTATED    67 190
  3Q GAIN WILD-TYPE  37 115
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q GAIN MUTATED     67  190
  3Q GAIN WILD-TYPE   37  115
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  FEMALE              67                37
  MALE               190               115
D6V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  3Q GAIN MUTATED                                      10
  3Q GAIN WILD-TYPE                                     2
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  3Q GAIN MUTATED                                        0
  3Q GAIN WILD-TYPE                                      6
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  3Q GAIN MUTATED                                         1
  3Q GAIN WILD-TYPE                                       0
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  3Q GAIN MUTATED                                                           246
  3Q GAIN WILD-TYPE                                                         144
D6V9, multiclass
                                                             clus
vv                                                            3Q GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    10
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    0
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             246
                                                             clus
vv                                                            3Q GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       2
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      6
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               144
D6V10, binary
                   cls
clus                  0   1
  3Q GAIN MUTATED    10 247
  3Q GAIN WILD-TYPE   3 149
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q GAIN MUTATED     10  247
  3Q GAIN WILD-TYPE    3  149
     clus
vv    3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  NO               10                 3
  YES             247               149
D6V11, continuous
D6V12, continuous
                   vv
clus                 R0  R1  R2  RX
  3Q GAIN MUTATED   208   4   3  12
  3Q GAIN WILD-TYPE 124   4   1   6
D6V13, multiclass
    clus
vv   3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  R0             208               124
  R1               4                 4
  R2               3                 1
  RX              12                 6

Clustering(7) Variable = 4P GAIN MUTATION ANALYSIS
D7V1, survival
                   sevent
clus2                 0   1
  4P GAIN MUTATED    10  12
  4P GAIN WILD-TYPE 234 127
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               22               361 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               12               127 
$`4P GAIN MUTATED`
TCGA-18-3409 TCGA-18-3410 TCGA-22-1017 TCGA-22-4591 TCGA-22-4601 TCGA-22-5478 
       79.46         4.80        48.82        20.48        34.75         0.79 
TCGA-22-A5C4 TCGA-34-2596 TCGA-34-2609 TCGA-37-4130 TCGA-43-2576 TCGA-43-3920 
        0.95         2.63        31.27         8.12        40.21        33.11 
TCGA-43-8116 TCGA-56-1622 TCGA-60-2715 TCGA-66-2763 TCGA-68-8250 TCGA-77-6842 
       11.77        28.96        35.34         0.99         8.02        29.56 
TCGA-77-8007 TCGA-90-7767 TCGA-96-7545 TCGA-98-8022 
        6.51         2.93        44.19         7.36 

$`4P GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3411 TCGA-18-3412 TCGA-18-3414 
       12.16         4.47        81.01        46.52        11.34        13.02 
TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 
       59.51        28.34        24.92         1.64        43.76         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.54         3.02        27.19       119.54        46.88 
TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 
       99.16        70.16        60.89        34.78        15.58        31.73 
TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 
      122.43         9.34       119.80         8.78        31.63        88.11 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-21-A5DI TCGA-22-0940 TCGA-22-0944 
       41.69        33.93        10.82        32.19        19.99         7.33 
TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 
       14.93         4.31        64.21         1.74        14.10        27.02 
TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4604 
       35.08        48.33        24.13         0.56        38.17        13.12 
TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       32.02        19.30         9.57        11.77        31.73        64.93 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 
       63.55        14.63        44.25        54.28        71.34        79.20 
TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 
       11.74        18.84        30.12        62.86        56.32        16.64 
TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 
        7.63       114.05        97.94        43.10       173.82       103.53 
TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 
      141.34        14.07        54.44        10.82        19.76        27.02 
TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 
       61.61        31.50        28.96        32.88        50.24        67.79 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 
       56.38         9.07        23.24        12.00        14.07        30.94 
TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 
       18.15         4.96         1.12         3.95         0.43         0.39 
TCGA-37-4129 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        6.58         7.46         7.82         6.81         0.39         3.39 
TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
       47.80        74.07        44.75        68.58        55.20        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 
       60.79         1.71        24.33         1.94        27.39        36.39 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-39-5040 TCGA-43-2578 
       15.58        35.64        35.70        17.88        17.06        22.49 
TCGA-43-2581 TCGA-43-3394 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 
       38.66        27.02        11.47        18.05        12.36        24.89 
TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 
       10.19         5.46         3.81         6.97         7.76        66.51 
TCGA-43-8115 TCGA-43-8118 TCGA-43-A474 TCGA-43-A475 TCGA-43-A56U TCGA-43-A56V 
       13.38         2.93        11.61         9.73        14.20        12.03 
TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 
        9.99        10.65        13.91         0.39         0.39        29.95 
TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 TCGA-56-5897 
       17.79         5.46        30.35         8.75        27.45         0.10 
TCGA-56-5898 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 
       18.25         2.04         0.62         0.99         0.43         0.99 
TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 TCGA-56-8503 
        1.45         1.32         0.85         0.20         0.03         1.35 
TCGA-56-8504 TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 
        5.85         1.81         1.18         2.07         0.56         0.53 
TCGA-56-8629 TCGA-56-A49D TCGA-56-A4BW TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A4ZJ 
        1.12         1.25         0.07         1.51         0.99         0.82 
TCGA-56-A4ZK TCGA-56-A5DR TCGA-56-A5DS TCGA-58-8386 TCGA-58-8387 TCGA-58-8388 
        0.13         0.13         0.26         0.03        13.25        12.43 
TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 TCGA-58-8393 TCGA-58-A46J TCGA-58-A46K 
       29.95        71.24        16.47        34.78        64.87        34.36 
TCGA-58-A46L TCGA-58-A46M TCGA-58-A46N TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 
       36.59        23.24        17.75        21.11         3.58        12.23 
TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 
       10.22        96.82        37.94        92.71        21.73        80.45 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 
       49.48        66.54        41.42         9.01        56.91        50.33 
TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
       48.49        42.64         3.19        32.32        29.85        35.90 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 
       23.57        26.83        11.77        16.96        43.10         2.01 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       21.07         0.99         1.02         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 
        0.99        21.01        25.05         2.01         1.02         2.01 
TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         7.07        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
       19.00        12.03         3.98        12.00        24.95         1.97 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 
       25.97        40.01        22.98         4.04        22.98         5.03 
TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 
       30.02        10.06        54.08         4.01        49.05         2.73 
TCGA-68-7756 TCGA-68-7757 TCGA-68-8251 TCGA-68-A59I TCGA-68-A59J TCGA-77-6843 
        6.64         6.94         3.16         3.98         3.42        73.12 
TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 
       75.09        23.28        11.18        89.98        20.78         0.49 
TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 
       42.28        70.13       106.95         0.16        46.78        15.75 
TCGA-77-8008 TCGA-77-8009 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 
       86.76        53.95        37.81        82.92        12.59        53.92 
TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 
       39.09        17.72       104.09        11.54        26.40        27.39 
TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-77-8153 TCGA-77-8154 TCGA-77-8156 
        6.97         9.63        54.41        55.36        35.90         0.33 
TCGA-77-A5FZ TCGA-77-A5G3 TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6175 TCGA-85-6560 
      126.18       117.57        30.81        23.44         9.67         0.36 
TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 
       12.99         1.12         0.59         0.33         1.61         0.03 
TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 
        1.15         1.25         1.97         0.85         1.97         0.53 
TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 
       16.77        14.07        16.87         0.43         0.36         1.45 
TCGA-85-8288 TCGA-85-8350 TCGA-85-8351 TCGA-85-8352 TCGA-85-8353 TCGA-85-8354 
        1.78         1.97         1.81         2.20         1.78         2.01 
TCGA-85-8355 TCGA-85-8479 TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 
        2.01         0.72         0.69        14.63        13.94         0.10 
TCGA-85-8666 TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A50M TCGA-85-A513 TCGA-85-A53L 
       15.62         0.49         0.82         0.62         0.79         0.43 
TCGA-90-6837 TCGA-90-7766 TCGA-90-7769 TCGA-90-7964 TCGA-90-A4ED TCGA-90-A4EE 
       24.92         9.50        11.77        14.07         8.02        10.88 
TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 
        2.70         3.48         4.01         5.26         2.30         2.86 
TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 TCGA-96-8169 TCGA-96-8170 TCGA-96-A4JK 
        0.16        11.70        39.88         6.21         6.94         8.98 
TCGA-96-A4JL TCGA-98-7454 TCGA-98-8020 TCGA-98-8021 TCGA-98-8023 TCGA-J1-A4AH 
        6.02         8.42         2.76        13.58        10.13         7.30 
TCGA-L3-A4E7 TCGA-L3-A524 TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HG 
        1.15        14.76         1.18         2.73        56.61        50.89 
TCGA-NC-A5HI 
       37.32 

  4P GAIN MUTATED 4P GAIN WILD-TYPE 
             0.79              0.03 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
            79.46            173.82 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
           16.125            13.380 
[1] "0.8 - 79.5 (16.1)"  "0.0 - 173.8 (13.4)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
  "4P GAIN MUTATED"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
  "4P GAIN MUTATED"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
  "4P GAIN MUTATED"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
[1] "hr=" "1.7"
D7V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  4P GAIN MUTATED         0        6        5        0         3         6
  4P GAIN WILD-TYPE       1       63      131        1        47        64
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  4P GAIN MUTATED            5          0        0
  4P GAIN WILD-TYPE         49         20        5
D7V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  4P GAIN MUTATED     8  13   3   2
  4P GAIN WILD-TYPE  87 237  42  17
D7V4, multiclass
    clus
vv   4P GAIN MUTATED 4P GAIN WILD-TYPE
  T1               8                87
  T2              13               237
  T3               3                42
  T4               2                17
                   vv
clus                 N0  N1  N2  N3
  4P GAIN MUTATED    18   6   2   0
  4P GAIN WILD-TYPE 237 103  32   5
D7V5, multiclass
    clus
vv   4P GAIN MUTATED 4P GAIN WILD-TYPE
  N0              18               237
  N1               6               103
  N2               2                32
  N3               0                 5
                   vv
clus                 M0  M1  MX
  4P GAIN MUTATED    23   0   3
  4P GAIN WILD-TYPE 326   5  46
D7V6, multiclass
    clus
vv   4P GAIN MUTATED 4P GAIN WILD-TYPE
  M0              23               326
  M1               0                 5
  MX               3                46
D7V7, binary
                   cls
clus                  0   1
  4P GAIN MUTATED     3  23
  4P GAIN WILD-TYPE 101 282
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P GAIN MUTATED      3   23
  4P GAIN WILD-TYPE  101  282
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  FEMALE               3               101
  MALE                23               282
D7V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  4P GAIN MUTATED                                       1
  4P GAIN WILD-TYPE                                    11
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  4P GAIN MUTATED                                        0
  4P GAIN WILD-TYPE                                      6
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  4P GAIN MUTATED                                         0
  4P GAIN WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  4P GAIN MUTATED                                                            25
  4P GAIN WILD-TYPE                                                         365
D7V9, multiclass
                                                             clus
vv                                                            4P GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     1
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    0
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              25
                                                             clus
vv                                                            4P GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      11
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      6
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               365
D7V10, binary
                   cls
clus                  0   1
  4P GAIN MUTATED     1  25
  4P GAIN WILD-TYPE  12 371
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P GAIN MUTATED      1   25
  4P GAIN WILD-TYPE   12  371
     clus
vv    4P GAIN MUTATED 4P GAIN WILD-TYPE
  NO                1                12
  YES              25               371
D7V11, continuous
D7V12, continuous
                   vv
clus                 R0  R1  R2  RX
  4P GAIN MUTATED    20   1   0   2
  4P GAIN WILD-TYPE 312   7   4  16
D7V13, multiclass
    clus
vv   4P GAIN MUTATED 4P GAIN WILD-TYPE
  R0              20               312
  R1               1                 7
  R2               0                 4
  RX               2                16

Clustering(8) Variable = 4Q GAIN MUTATION ANALYSIS
D8V1, survival
                   sevent
clus2                 0   1
  4Q GAIN MUTATED     7   9
  4Q GAIN WILD-TYPE 237 130
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
               16               367 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
                9               130 
$`4Q GAIN MUTATED`
TCGA-18-3409 TCGA-18-3410 TCGA-22-4593 TCGA-22-4601 TCGA-22-5478 TCGA-22-A5C4 
       79.46         4.80        35.08        34.75         0.79         0.95 
TCGA-33-6738 TCGA-34-2596 TCGA-34-2609 TCGA-39-5031 TCGA-43-2576 TCGA-43-3920 
       27.02         2.63        31.27        27.39        40.21        33.11 
TCGA-56-1622 TCGA-56-7579 TCGA-60-2715 TCGA-96-7545 
       28.96         1.45        35.34        44.19 

$`4Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3411 TCGA-18-3412 TCGA-18-3414 
       12.16         4.47        81.01        46.52        11.34        13.02 
TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 
       59.51        28.34        24.92         1.64        43.76         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.54         3.02        27.19       119.54        46.88 
TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 
       99.16        70.16        60.89        34.78        15.58        31.73 
TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 
      122.43         9.34       119.80         8.78        31.63        88.11 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-21-A5DI TCGA-22-0940 TCGA-22-0944 
       41.69        33.93        10.82        32.19        19.99         7.33 
TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 
       14.93         4.31        64.21         1.74        14.10        27.02 
TCGA-22-1017 TCGA-22-4591 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 
       48.82        20.48        48.33        24.13         0.56        38.17 
TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 
       13.12        32.02        19.30         9.57        11.77        31.73 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5479 TCGA-22-5480 
       64.93        63.55        14.63        44.25        54.28        71.34 
TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 
       79.20        11.74        18.84        30.12        62.86        56.32 
TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 
       16.64         7.63       114.05        97.94        43.10       173.82 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 
      103.53       141.34        14.07        54.44        10.82        19.76 
TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 
       61.61        31.50        28.96        32.88        50.24        67.79 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 
       56.38         9.07        23.24        12.00        14.07        30.94 
TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 
       18.15         4.96         1.12         3.95         0.43         0.39 
TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        6.58         8.12         7.46         7.82         6.81         0.39 
TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 
        3.39        47.80        74.07        44.75        68.58        55.20 
TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5034 
       70.03        60.79         1.71        24.33         1.94        36.39 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-39-5040 TCGA-43-2578 
       15.58        35.64        35.70        17.88        17.06        22.49 
TCGA-43-2581 TCGA-43-3394 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 
       38.66        27.02        11.47        18.05        12.36        24.89 
TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 
       10.19         5.46         3.81         6.97         7.76        66.51 
TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 TCGA-43-A474 TCGA-43-A475 TCGA-43-A56U 
       13.38        11.77         2.93        11.61         9.73        14.20 
TCGA-43-A56V TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
       12.03         9.99        10.65        13.91         0.39         0.39 
TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 
       29.95        17.79         5.46        30.35         8.75        27.45 
TCGA-56-5897 TCGA-56-5898 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 
        0.10        18.25         2.04         0.62         0.99         0.43 
TCGA-56-7223 TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 TCGA-56-8503 
        0.99         1.32         0.85         0.20         0.03         1.35 
TCGA-56-8504 TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 
        5.85         1.81         1.18         2.07         0.56         0.53 
TCGA-56-8629 TCGA-56-A49D TCGA-56-A4BW TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A4ZJ 
        1.12         1.25         0.07         1.51         0.99         0.82 
TCGA-56-A4ZK TCGA-56-A5DR TCGA-56-A5DS TCGA-58-8386 TCGA-58-8387 TCGA-58-8388 
        0.13         0.13         0.26         0.03        13.25        12.43 
TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 TCGA-58-8393 TCGA-58-A46J TCGA-58-A46K 
       29.95        71.24        16.47        34.78        64.87        34.36 
TCGA-58-A46L TCGA-58-A46M TCGA-58-A46N TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 
       36.59        23.24        17.75        21.11         3.58        12.23 
TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 
       10.22        96.82        37.94        92.71        21.73        80.45 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 
       49.48        66.54        41.42         9.01        56.91        50.33 
TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
       48.49        42.64         3.19        32.32        29.85        35.90 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 
       23.57        26.83        11.77        16.96        43.10         2.01 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       21.07         0.99         1.02         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        21.01        25.05         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 
        2.01         2.01         7.07        23.01        19.00         3.02 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        2.01        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 
        1.97        25.97        40.01        22.98         4.04        22.98 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        5.03        30.02        10.06        54.08         4.01        49.05 
TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 TCGA-68-A59I 
        2.73         6.64         6.94         8.02         3.16         3.98 
TCGA-68-A59J TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 
        3.42        29.56        73.12        75.09        23.28        11.18 
TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 
       89.98        20.78         0.49        42.28        70.13       106.95 
TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 
        0.16        46.78        15.75         6.51        86.76        53.95 
TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 
       37.81        82.92        12.59        53.92        39.09        17.72 
TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 
      104.09        11.54        26.40        27.39         6.97         9.63 
TCGA-77-8150 TCGA-77-8153 TCGA-77-8154 TCGA-77-8156 TCGA-77-A5FZ TCGA-77-A5G3 
       54.41        55.36        35.90         0.33       126.18       117.57 
TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6175 TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 
       30.81        23.44         9.67         0.36        12.99         1.12 
TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 
        0.59         0.33         1.61         0.03         1.15         1.25 
TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 
        1.97         0.85         1.97         0.53        16.77        14.07 
TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 TCGA-85-8288 TCGA-85-8350 
       16.87         0.43         0.36         1.45         1.78         1.97 
TCGA-85-8351 TCGA-85-8352 TCGA-85-8353 TCGA-85-8354 TCGA-85-8355 TCGA-85-8479 
        1.81         2.20         1.78         2.01         2.01         0.72 
TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL 
        0.69        14.63        13.94         0.10        15.62         0.49 
TCGA-85-A4QR TCGA-85-A50M TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 TCGA-90-7766 
        0.82         0.62         0.79         0.43        24.92         9.50 
TCGA-90-7767 TCGA-90-7769 TCGA-90-7964 TCGA-90-A4ED TCGA-90-A4EE TCGA-92-7340 
        2.93        11.77        14.07         8.02        10.88         2.70 
TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 
        3.48         4.01         5.26         2.30         2.86         0.16 
TCGA-94-7943 TCGA-96-7544 TCGA-96-8169 TCGA-96-8170 TCGA-96-A4JK TCGA-96-A4JL 
       11.70        39.88         6.21         6.94         8.98         6.02 
TCGA-98-7454 TCGA-98-8020 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 TCGA-J1-A4AH 
        8.42         2.76        13.58         7.36        10.13         7.30 
TCGA-L3-A4E7 TCGA-L3-A524 TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HG 
        1.15        14.76         1.18         2.73        56.61        50.89 
TCGA-NC-A5HI 
       37.32 

  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
             0.79              0.03 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
            79.46            173.82 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
           30.115            13.020 
[1] "0.8 - 79.5 (30.1)"  "0.0 - 173.8 (13.0)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "4Q GAIN MUTATED"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "4Q GAIN MUTATED"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "4Q GAIN MUTATED"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
[1] "hr=" "1.4"
D8V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  4Q GAIN MUTATED         0        3        3        0         3         3
  4Q GAIN WILD-TYPE       1       66      133        1        47        67
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  4Q GAIN MUTATED            5          0        0
  4Q GAIN WILD-TYPE         49         20        5
D8V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  4Q GAIN MUTATED     5  10   2   1
  4Q GAIN WILD-TYPE  90 240  43  18
D8V4, multiclass
    clus
vv   4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  T1               5                90
  T2              10               240
  T3               2                43
  T4               1                18
                   vv
clus                 N0  N1  N2  N3
  4Q GAIN MUTATED    12   4   2   0
  4Q GAIN WILD-TYPE 243 105  32   5
D8V5, multiclass
    clus
vv   4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  N0              12               243
  N1               4               105
  N2               2                32
  N3               0                 5
                   vv
clus                 M0  M1  MX
  4Q GAIN MUTATED    16   0   2
  4Q GAIN WILD-TYPE 333   5  47
D8V6, multiclass
    clus
vv   4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  M0              16               333
  M1               0                 5
  MX               2                47
D8V7, binary
                   cls
clus                  0   1
  4Q GAIN MUTATED     3  15
  4Q GAIN WILD-TYPE 101 290
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q GAIN MUTATED      3   15
  4Q GAIN WILD-TYPE  101  290
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  FEMALE               3               101
  MALE                15               290
D8V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  4Q GAIN MUTATED                                       1
  4Q GAIN WILD-TYPE                                    11
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  4Q GAIN MUTATED                                        0
  4Q GAIN WILD-TYPE                                      6
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  4Q GAIN MUTATED                                         0
  4Q GAIN WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  4Q GAIN MUTATED                                                            17
  4Q GAIN WILD-TYPE                                                         373
D8V9, multiclass
                                                             clus
vv                                                            4Q GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     1
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    0
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              17
                                                             clus
vv                                                            4Q GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      11
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      6
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               373
D8V10, binary
                   cls
clus                  0   1
  4Q GAIN MUTATED     1  17
  4Q GAIN WILD-TYPE  12 379
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q GAIN MUTATED      1   17
  4Q GAIN WILD-TYPE   12  379
     clus
vv    4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  NO                1                12
  YES              17               379
D8V11, continuous
D8V12, continuous
                   vv
clus                 R0  R1  R2  RX
  4Q GAIN MUTATED    15   0   0   1
  4Q GAIN WILD-TYPE 317   8   4  17
D8V13, multiclass
    clus
vv   4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  R0              15               317
  R1               0                 8
  R2               0                 4
  RX               1                17

Clustering(9) Variable = 5P GAIN MUTATION ANALYSIS
D9V1, survival
                   sevent
clus2                 0   1
  5P GAIN MUTATED   152  90
  5P GAIN WILD-TYPE  92  49
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
              242               141 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
               90                49 
$`5P GAIN MUTATED`
TCGA-18-3411 TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3417 TCGA-18-3421 
       46.52        11.34        13.02        59.51        24.92        43.76 
TCGA-18-5592 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1077 TCGA-21-1080 
        3.02        46.88        99.16        70.16        34.78       122.43 
TCGA-21-1081 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 
        9.34         8.78        31.63        88.11        41.69        33.93 
TCGA-21-5787 TCGA-21-A5DI TCGA-22-0940 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       10.82        32.19        19.99         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 
       14.10        27.02        20.48        35.08        48.33        24.13 
TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 
        0.56        38.17        34.75         9.57        11.77        31.73 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5482 TCGA-22-5483 
       63.55        14.63        44.25         0.79        11.74        18.84 
TCGA-22-5492 TCGA-22-A5C4 TCGA-33-4533 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 
       16.64         0.95       114.05       173.82       103.53       141.34 
TCGA-33-4587 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2608 
       54.44        27.02         2.63        61.61        31.50        32.88 
TCGA-34-2609 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5928 
       31.27         9.07        23.24        12.00        14.07        18.15 
TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3792 TCGA-37-4133 TCGA-37-4135 
        4.96         1.12         3.95         0.39         7.82         6.81 
TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5021 TCGA-39-5022 
        0.39         3.39        47.80        74.07        68.58        55.20 
TCGA-39-5024 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 
       70.03        24.33         1.94        27.39        15.58        35.64 
TCGA-39-5039 TCGA-43-2576 TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 
       17.88        40.21        38.66        27.02        33.11        11.47 
TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 
       18.05        12.36        24.89         6.97         7.76        66.51 
TCGA-43-8116 TCGA-43-A474 TCGA-43-A56U TCGA-43-A56V TCGA-46-3768 TCGA-46-6025 
       11.77        11.61        14.20        12.03         9.99        10.65 
TCGA-46-6026 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7811 TCGA-56-1622 
       13.91        29.95        17.79         5.46         8.75        28.96 
TCGA-56-6545 TCGA-56-6546 TCGA-56-7222 TCGA-56-7580 TCGA-56-7582 TCGA-56-7822 
        2.04         0.62         0.43         1.32         0.85         0.03 
TCGA-56-8503 TCGA-56-8504 TCGA-56-8624 TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 
        1.35         5.85         1.18         0.56         0.53         1.12 
TCGA-56-A4BW TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A5DR TCGA-56-A5DS 
        0.07         1.51         0.99         0.82         0.13         0.26 
TCGA-58-8386 TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 
        0.03        13.25        12.43        29.95        71.24        16.47 
TCGA-58-A46J TCGA-58-A46K TCGA-58-A46M TCGA-58-A46N TCGA-60-2695 TCGA-60-2697 
       64.87        34.36        23.24        17.75        21.11        12.23 
TCGA-60-2703 TCGA-60-2704 TCGA-60-2711 TCGA-60-2712 TCGA-60-2714 TCGA-60-2719 
       96.82        37.94        41.42         9.01        50.33        42.64 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 
        3.19        32.32        35.90        23.57        26.83        11.77 
TCGA-66-2727 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2756 
       16.96         2.01        21.07         0.99         1.02         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2766 TCGA-66-2769 TCGA-66-2770 
        0.99        21.01        25.05         1.02         7.07        23.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2782 
       19.00         3.02         2.01        19.00        12.03        12.00 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2792 TCGA-66-2794 
        1.97        25.97        40.01        22.98        30.02        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-68-7756 TCGA-68-7757 TCGA-68-A59I TCGA-68-A59J 
        4.01        49.05         6.64         6.94         3.98         3.42 
TCGA-77-6842 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7141 TCGA-77-7142 
       29.56        75.09        23.28        11.18         0.49        42.28 
TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 TCGA-77-8008 
      106.95         0.16        46.78        15.75         6.51        86.76 
TCGA-77-8009 TCGA-77-8128 TCGA-77-8130 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 
       53.95        37.81        82.92        53.92        39.09        17.72 
TCGA-77-8139 TCGA-77-8143 TCGA-77-8145 TCGA-77-8150 TCGA-77-8156 TCGA-77-A5GH 
      104.09        26.40         6.97        54.41         0.33        23.44 
TCGA-85-6175 TCGA-85-6560 TCGA-85-6798 TCGA-85-7696 TCGA-85-7699 TCGA-85-7843 
        9.67         0.36         1.12         0.59         0.03         1.15 
TCGA-85-7844 TCGA-85-8048 TCGA-85-8071 TCGA-85-8072 TCGA-85-8277 TCGA-85-8287 
        1.25         0.85        14.07        16.87         0.36         1.45 
TCGA-85-8350 TCGA-85-8351 TCGA-85-8479 TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 
        1.97         1.81         0.72         0.69        14.63        13.94 
TCGA-85-8664 TCGA-85-8666 TCGA-85-A4QR TCGA-85-A50M TCGA-90-7766 TCGA-90-7767 
        0.10        15.62         0.82         0.62         9.50         2.93 
TCGA-90-7769 TCGA-90-A4EE TCGA-92-7340 TCGA-92-7341 TCGA-92-8064 TCGA-94-7557 
       11.77        10.88         2.70         3.48         5.26         0.16 
TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 TCGA-96-A4JK TCGA-98-8020 
       39.88        44.19         6.21         6.94         8.98         2.76 
TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-L3-A524 
       13.58         7.36        10.13         7.30         1.15        14.76 
TCGA-LA-A446 TCGA-MF-A522 
        1.18         2.73 

$`5P GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3416 
       12.16         4.47        81.01        79.46         4.80        28.34 
TCGA-18-3419 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5595 TCGA-21-1070 
        1.64         6.15         2.79        90.54        27.19       119.54 
TCGA-21-1076 TCGA-21-1078 TCGA-21-1079 TCGA-21-1082 TCGA-22-1000 TCGA-22-1005 
       60.89        15.58        31.73       119.80        14.93        64.21 
TCGA-22-1017 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-5472 TCGA-22-5479 
       48.82        13.12        32.02        19.30        64.93        54.28 
TCGA-22-5480 TCGA-22-5481 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-33-4532 
       71.34        79.20        30.12        62.86        56.32         7.63 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4586 TCGA-33-4589 TCGA-33-6737 TCGA-34-2605 
       97.94        43.10        14.07        10.82        19.76        28.96 
TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5927 TCGA-37-3789 TCGA-37-4129 
       50.24        67.79        56.38        30.94         0.43         6.58 
TCGA-37-4130 TCGA-37-4132 TCGA-39-5019 TCGA-39-5027 TCGA-39-5028 TCGA-39-5034 
        8.12         7.46        44.75        60.79         1.71        36.39 
TCGA-39-5037 TCGA-39-5040 TCGA-43-2578 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 
       35.70        17.06        22.49        10.19         5.46         3.81 
TCGA-43-8115 TCGA-43-8118 TCGA-43-A475 TCGA-51-4079 TCGA-51-4080 TCGA-52-7810 
       13.38         2.93         9.73         0.39         0.39        30.35 
TCGA-52-7812 TCGA-56-5897 TCGA-56-5898 TCGA-56-7221 TCGA-56-7223 TCGA-56-7579 
       27.45         0.10        18.25         0.99         0.99         1.45 
TCGA-56-7730 TCGA-56-8622 TCGA-56-8625 TCGA-56-A49D TCGA-56-A4ZK TCGA-58-8393 
        0.20         1.81         2.07         1.25         0.13        34.78 
TCGA-58-A46L TCGA-60-2696 TCGA-60-2698 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 
       36.59         3.58        10.22        92.71        21.73        80.45 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2713 TCGA-60-2715 TCGA-60-2716 TCGA-60-2722 
       49.48        66.54        56.91        35.34        48.49        29.85 
TCGA-66-2734 TCGA-66-2754 TCGA-66-2755 TCGA-66-2763 TCGA-66-2765 TCGA-66-2767 
       43.10         2.01         0.92         0.99         2.01         2.01 
TCGA-66-2768 TCGA-66-2781 TCGA-66-2783 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 
        2.01         3.98        24.95         4.04        22.98         5.03 
TCGA-66-2793 TCGA-68-7755 TCGA-68-8250 TCGA-68-8251 TCGA-77-6843 TCGA-77-7139 
       10.06         2.73         8.02         3.16        73.12        89.98 
TCGA-77-7140 TCGA-77-7335 TCGA-77-8131 TCGA-77-8140 TCGA-77-8144 TCGA-77-8148 
       20.78        70.13        12.59        11.54        27.39         9.63 
TCGA-77-8153 TCGA-77-8154 TCGA-77-A5FZ TCGA-77-A5G3 TCGA-77-A5GB TCGA-85-6561 
       55.36        35.90       126.18       117.57        30.81        12.99 
TCGA-85-7697 TCGA-85-7698 TCGA-85-7950 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 
        0.33         1.61         1.97         1.97         0.53        16.77 
TCGA-85-8276 TCGA-85-8288 TCGA-85-8352 TCGA-85-8353 TCGA-85-8354 TCGA-85-8355 
        0.43         1.78         2.20         1.78         2.01         2.01 
TCGA-85-A4CL TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 TCGA-90-7964 TCGA-90-A4ED 
        0.49         0.79         0.43        24.92        14.07         8.02 
TCGA-92-8063 TCGA-92-8065 TCGA-94-7033 TCGA-94-7943 TCGA-96-A4JL TCGA-98-7454 
        4.01         2.30         2.86        11.70         6.02         8.42 
TCGA-NC-A5HE TCGA-NC-A5HG TCGA-NC-A5HI 
       56.61        50.89        37.32 

  5P GAIN MUTATED 5P GAIN WILD-TYPE 
             0.03              0.10 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
           173.82            126.18 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
           13.415            13.380 
[1] "0.0 - 173.8 (13.4)" "0.1 - 126.2 (13.4)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D9V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  5P GAIN MUTATED         1       44       86        1        31        48
  5P GAIN WILD-TYPE       0       25       50        0        19        22
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  5P GAIN MUTATED           32         11        4
  5P GAIN WILD-TYPE         22          9        1
D9V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  5P GAIN MUTATED    56 164  26  13
  5P GAIN WILD-TYPE  39  86  19   6
D9V4, multiclass
    clus
vv   5P GAIN MUTATED 5P GAIN WILD-TYPE
  T1              56                39
  T2             164                86
  T3              26                19
  T4              13                 6
                   vv
clus                 N0  N1  N2  N3
  5P GAIN MUTATED   167  67  23   1
  5P GAIN WILD-TYPE  88  42  11   4
D9V5, multiclass
    clus
vv   5P GAIN MUTATED 5P GAIN WILD-TYPE
  N0             167                88
  N1              67                42
  N2              23                11
  N3               1                 4
                   vv
clus                 M0  M1  MX
  5P GAIN MUTATED   221   4  32
  5P GAIN WILD-TYPE 128   1  17
D9V6, multiclass
    clus
vv   5P GAIN MUTATED 5P GAIN WILD-TYPE
  M0             221               128
  M1               4                 1
  MX              32                17
D9V7, binary
                   cls
clus                  0   1
  5P GAIN MUTATED    65 194
  5P GAIN WILD-TYPE  39 111
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P GAIN MUTATED     65  194
  5P GAIN WILD-TYPE   39  111
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  FEMALE              65                39
  MALE               194               111
D9V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  5P GAIN MUTATED                                       8
  5P GAIN WILD-TYPE                                     4
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  5P GAIN MUTATED                                        2
  5P GAIN WILD-TYPE                                      4
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  5P GAIN MUTATED                                         1
  5P GAIN WILD-TYPE                                       0
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  5P GAIN MUTATED                                                           248
  5P GAIN WILD-TYPE                                                         142
D9V9, multiclass
                                                             clus
vv                                                            5P GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     8
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    2
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             248
                                                             clus
vv                                                            5P GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       4
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      4
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               142
D9V10, binary
                   cls
clus                  0   1
  5P GAIN MUTATED     7 252
  5P GAIN WILD-TYPE   6 144
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P GAIN MUTATED      7  252
  5P GAIN WILD-TYPE    6  144
     clus
vv    5P GAIN MUTATED 5P GAIN WILD-TYPE
  NO                7                 6
  YES             252               144
D9V11, continuous
D9V12, continuous
                   vv
clus                 R0  R1  R2  RX
  5P GAIN MUTATED   217   5   3   5
  5P GAIN WILD-TYPE 115   3   1  13
D9V13, multiclass
    clus
vv   5P GAIN MUTATED 5P GAIN WILD-TYPE
  R0             217               115
  R1               5                 3
  R2               3                 1
  RX               5                13

Clustering(10) Variable = 5Q GAIN MUTATION ANALYSIS
D10V1, survival
                   sevent
clus2                 0   1
  5Q GAIN MUTATED    43  31
  5Q GAIN WILD-TYPE 201 108
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               74               309 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               31               108 
$`5Q GAIN MUTATED`
TCGA-18-5592 TCGA-21-1071 TCGA-21-1075 TCGA-21-1083 TCGA-21-5782 TCGA-21-A5DI 
        3.02        46.88        70.16         8.78        31.63        32.19 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4595 TCGA-22-4596 TCGA-22-5478 TCGA-22-5482 
       14.10        27.02        24.13         0.56         0.79        11.74 
TCGA-22-5483 TCGA-22-A5C4 TCGA-33-4582 TCGA-33-4583 TCGA-34-2596 TCGA-34-5236 
       18.84         0.95       103.53       141.34         2.63         9.07 
TCGA-34-5241 TCGA-34-5928 TCGA-37-3792 TCGA-37-5819 TCGA-39-5021 TCGA-39-5029 
       14.07        18.15         0.39         3.39        68.58        24.33 
TCGA-39-5039 TCGA-43-3920 TCGA-43-6143 TCGA-43-7657 TCGA-43-7658 TCGA-43-A56V 
       17.88        33.11        12.36         7.76        66.51        12.03 
TCGA-56-1622 TCGA-56-7222 TCGA-56-7580 TCGA-56-8503 TCGA-56-8624 TCGA-56-8626 
       28.96         0.43         1.32         1.35         1.18         0.56 
TCGA-58-8386 TCGA-58-A46M TCGA-58-A46N TCGA-60-2703 TCGA-60-2712 TCGA-60-2719 
        0.03        23.24        17.75        96.82         9.01        42.64 
TCGA-60-2724 TCGA-60-2725 TCGA-66-2744 TCGA-66-2771 TCGA-66-2778 TCGA-66-2786 
       23.57        26.83         0.99        19.00        19.00        25.97 
TCGA-66-2792 TCGA-77-6842 TCGA-77-6844 TCGA-77-7138 TCGA-77-7337 TCGA-77-7463 
       30.02        29.56        75.09        11.18       106.95        46.78 
TCGA-77-7465 TCGA-77-8008 TCGA-77-8130 TCGA-77-8133 TCGA-77-8150 TCGA-77-8156 
       15.75        86.76        82.92        53.92        54.41         0.33 
TCGA-85-6175 TCGA-85-7699 TCGA-85-8048 TCGA-85-8350 TCGA-85-8582 TCGA-90-7769 
        9.67         0.03         0.85         1.97        13.94        11.77 
TCGA-92-7340 TCGA-96-8169 TCGA-96-8170 TCGA-98-8020 TCGA-J1-A4AH TCGA-L3-A4E7 
        2.70         6.21         6.94         2.76         7.30         1.15 
TCGA-LA-A446 TCGA-MF-A522 
        1.18         2.73 

$`5Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.01        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.64 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5595 TCGA-21-1070 
       43.76         6.15         2.79        90.54        27.19       119.54 
TCGA-21-1072 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 
       99.16        60.89        34.78        15.58        31.73       122.43 
TCGA-21-1081 TCGA-21-1082 TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 
        9.34       119.80        88.11        41.69        33.93        10.82 
TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 
       19.99         7.33        14.93         4.31        64.21         1.74 
TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4599 TCGA-22-4601 
       48.82        20.48        35.08        48.33        38.17        34.75 
TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 
       13.12        32.02        19.30         9.57        11.77        31.73 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5479 TCGA-22-5480 
       64.93        63.55        14.63        44.25        54.28        71.34 
TCGA-22-5481 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 
       79.20        30.12        62.86        56.32        16.64         7.63 
TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4586 TCGA-33-4587 
      114.05        97.94        43.10       173.82        14.07        54.44 
TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 
       10.82        19.76        27.02        61.61        31.50        28.96 
TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5239 
       32.88        31.27        50.24        67.79        56.38        23.24 
TCGA-34-5240 TCGA-34-5927 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 
       12.00        30.94         4.96         1.12         3.95         0.43 
TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        6.58         8.12         7.46         7.82         6.81         0.39 
TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       47.80        74.07        44.75        55.20        70.03        60.79 
TCGA-39-5028 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 
        1.71         1.94        27.39        36.39        15.58        35.64 
TCGA-39-5037 TCGA-39-5040 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-3394 
       35.70        17.06        40.21        22.49        38.66        27.02 
TCGA-43-5668 TCGA-43-5670 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 
       11.47        18.05        24.89        10.19         5.46         3.81 
TCGA-43-7656 TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 TCGA-43-A474 TCGA-43-A475 
        6.97        13.38        11.77         2.93        11.61         9.73 
TCGA-43-A56U TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
       14.20         9.99        10.65        13.91         0.39         0.39 
TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 
       29.95        17.79         5.46        30.35         8.75        27.45 
TCGA-56-5897 TCGA-56-5898 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7223 
        0.10        18.25         2.04         0.62         0.99         0.99 
TCGA-56-7579 TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 TCGA-56-8504 TCGA-56-8622 
        1.45         0.85         0.20         0.03         5.85         1.81 
TCGA-56-8625 TCGA-56-8628 TCGA-56-8629 TCGA-56-A49D TCGA-56-A4BW TCGA-56-A4BX 
        2.07         0.53         1.12         1.25         0.07         1.51 
TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DR TCGA-56-A5DS TCGA-58-8387 
        0.99         0.82         0.13         0.13         0.26        13.25 
TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 TCGA-58-8393 TCGA-58-A46J 
       12.43        29.95        71.24        16.47        34.78        64.87 
TCGA-58-A46K TCGA-58-A46L TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 
       34.36        36.59        21.11         3.58        12.23        10.22 
TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
       37.94        92.71        21.73        80.45        49.48        66.54 
TCGA-60-2711 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2720 
       41.42        56.91        50.33        35.34        48.49         3.19 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 
       32.32        29.85        35.90        11.77        16.96        43.10 
TCGA-66-2737 TCGA-66-2742 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
        2.01        21.07         1.02         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        21.01        25.05         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2773 TCGA-66-2777 
        2.01         2.01         7.07        23.01         3.02         2.01 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2787 
       12.03         3.98        12.00        24.95         1.97        40.01 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2793 TCGA-66-2794 
       22.98         4.04        22.98         5.03        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 
        4.01        49.05         2.73         6.64         6.94         8.02 
TCGA-68-8251 TCGA-68-A59I TCGA-68-A59J TCGA-77-6843 TCGA-77-6845 TCGA-77-7139 
        3.16         3.98         3.42        73.12        23.28        89.98 
TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7338 TCGA-77-8007 
       20.78         0.49        42.28        70.13         0.16         6.51 
TCGA-77-8009 TCGA-77-8128 TCGA-77-8131 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 
       53.95        37.81        12.59        39.09        17.72       104.09 
TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8153 
       11.54        26.40        27.39         6.97         9.63        55.36 
TCGA-77-8154 TCGA-77-A5FZ TCGA-77-A5G3 TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6560 
       35.90       126.18       117.57        30.81        23.44         0.36 
TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7843 
       12.99         1.12         0.59         0.33         1.61         1.15 
TCGA-85-7844 TCGA-85-7950 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 
        1.25         1.97         1.97         0.53        16.77        14.07 
TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 TCGA-85-8288 TCGA-85-8351 
       16.87         0.43         0.36         1.45         1.78         1.81 
TCGA-85-8352 TCGA-85-8353 TCGA-85-8354 TCGA-85-8355 TCGA-85-8479 TCGA-85-8481 
        2.20         1.78         2.01         2.01         0.72         0.69 
TCGA-85-8580 TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A50M 
       14.63         0.10        15.62         0.49         0.82         0.62 
TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7964 
        0.79         0.43        24.92         9.50         2.93        14.07 
TCGA-90-A4ED TCGA-90-A4EE TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 
        8.02        10.88         3.48         4.01         5.26         2.30 
TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 TCGA-96-7545 TCGA-96-A4JK 
        2.86         0.16        11.70        39.88        44.19         8.98 
TCGA-96-A4JL TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 TCGA-L3-A524 
        6.02         8.42        13.58         7.36        10.13        14.76 
TCGA-NC-A5HE TCGA-NC-A5HG TCGA-NC-A5HI 
       56.61        50.89        37.32 

  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
             0.03              0.03 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
           141.34            173.82 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
           14.005            13.250 
[1] "0.0 - 141.3 (14.0)" "0.0 - 173.8 (13.2)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D10V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  5Q GAIN MUTATED         1       13       24        0         8        20
  5Q GAIN WILD-TYPE       0       56      112        1        42        50
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  5Q GAIN MUTATED            9          1        1
  5Q GAIN WILD-TYPE         45         19        4
D10V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  5Q GAIN MUTATED    20  47  10   1
  5Q GAIN WILD-TYPE  75 203  35  18
D10V4, multiclass
    clus
vv   5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  T1              20                75
  T2              47               203
  T3              10                35
  T4               1                18
                   vv
clus                 N0  N1  N2  N3
  5Q GAIN MUTATED    48  23   5   1
  5Q GAIN WILD-TYPE 207  86  29   4
D10V5, multiclass
    clus
vv   5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  N0              48               207
  N1              23                86
  N2               5                29
  N3               1                 4
                   vv
clus                 M0  M1  MX
  5Q GAIN MUTATED    67   1   8
  5Q GAIN WILD-TYPE 282   4  41
D10V6, multiclass
    clus
vv   5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  M0              67               282
  M1               1                 4
  MX               8                41
D10V7, binary
                   cls
clus                  0   1
  5Q GAIN MUTATED    17  61
  5Q GAIN WILD-TYPE  87 244
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q GAIN MUTATED     17   61
  5Q GAIN WILD-TYPE   87  244
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  FEMALE              17                87
  MALE                61               244
D10V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  5Q GAIN MUTATED                                       2
  5Q GAIN WILD-TYPE                                    10
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  5Q GAIN MUTATED                                        0
  5Q GAIN WILD-TYPE                                      6
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  5Q GAIN MUTATED                                         0
  5Q GAIN WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  5Q GAIN MUTATED                                                            76
  5Q GAIN WILD-TYPE                                                         314
D10V9, multiclass
                                                             clus
vv                                                            5Q GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     2
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    0
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              76
                                                             clus
vv                                                            5Q GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      10
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      6
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               314
D10V10, binary
                   cls
clus                  0   1
  5Q GAIN MUTATED     2  76
  5Q GAIN WILD-TYPE  11 320
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q GAIN MUTATED      2   76
  5Q GAIN WILD-TYPE   11  320
     clus
vv    5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  NO                2                11
  YES              76               320
D10V11, continuous
D10V12, continuous
                   vv
clus                 R0  R1  R2  RX
  5Q GAIN MUTATED    65   1   1   1
  5Q GAIN WILD-TYPE 267   7   3  17
D10V13, multiclass
    clus
vv   5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  R0              65               267
  R1               1                 7
  R2               1                 3
  RX               1                17

Clustering(11) Variable = 6P GAIN MUTATION ANALYSIS
D11V1, survival
                   sevent
clus2                 0   1
  6P GAIN MUTATED    59  27
  6P GAIN WILD-TYPE 185 112
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               86               297 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               27               112 
$`6P GAIN MUTATED`
TCGA-18-3409 TCGA-21-1072 TCGA-21-1077 TCGA-21-1079 TCGA-21-1082 TCGA-21-1083 
       79.46        99.16        34.78        31.73       119.80         8.78 
TCGA-21-5786 TCGA-21-5787 TCGA-22-1002 TCGA-22-4601 TCGA-22-4605 TCGA-22-4607 
       33.93        10.82         4.31        34.75        32.02        19.30 
TCGA-22-5482 TCGA-33-4533 TCGA-33-4582 TCGA-33-4587 TCGA-33-4589 TCGA-34-2609 
       11.74       114.05       103.53        54.44        10.82        31.27 
TCGA-34-5928 TCGA-34-7107 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
       18.15         1.12         7.46         7.82         6.81         0.39 
TCGA-39-5019 TCGA-39-5022 TCGA-43-2578 TCGA-43-5670 TCGA-43-6770 TCGA-46-6026 
       44.75        55.20        22.49        18.05        10.19        13.91 
TCGA-52-7809 TCGA-52-7810 TCGA-56-1622 TCGA-56-5898 TCGA-56-6545 TCGA-56-6546 
        5.46        30.35        28.96        18.25         2.04         0.62 
TCGA-56-7730 TCGA-56-7822 TCGA-56-8629 TCGA-56-A49D TCGA-58-8387 TCGA-58-8393 
        0.20         0.03         1.12         1.25        13.25        34.78 
TCGA-58-A46K TCGA-60-2703 TCGA-60-2714 TCGA-60-2715 TCGA-60-2719 TCGA-60-2723 
       34.36        96.82        50.33        35.34        42.64        35.90 
TCGA-60-2725 TCGA-66-2734 TCGA-66-2754 TCGA-66-2757 TCGA-66-2759 TCGA-66-2765 
       26.83        43.10         2.01         0.99        25.05         2.01 
TCGA-66-2766 TCGA-66-2769 TCGA-66-2777 TCGA-66-2781 TCGA-66-2791 TCGA-66-2793 
        1.02         7.07         2.01         3.98         5.03        10.06 
TCGA-68-8251 TCGA-77-7141 TCGA-77-7142 TCGA-77-7465 TCGA-77-8130 TCGA-77-8156 
        3.16         0.49        42.28        15.75        82.92         0.33 
TCGA-85-6175 TCGA-85-6560 TCGA-85-6798 TCGA-85-7699 TCGA-85-7843 TCGA-85-8052 
        9.67         0.36         1.12         0.03         1.15         0.53 
TCGA-85-8072 TCGA-85-8276 TCGA-85-8287 TCGA-85-8353 TCGA-85-8582 TCGA-85-A4QR 
       16.87         0.43         1.45         1.78        13.94         0.82 
TCGA-90-A4EE TCGA-94-7943 TCGA-98-7454 TCGA-98-8022 TCGA-LA-A446 TCGA-MF-A522 
       10.88        11.70         8.42         7.36         1.18         2.73 
TCGA-NC-A5HE TCGA-NC-A5HG 
       56.61        50.89 

$`6P GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.01         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.64        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.54         3.02        27.19       119.54 
TCGA-21-1071 TCGA-21-1075 TCGA-21-1076 TCGA-21-1078 TCGA-21-1080 TCGA-21-1081 
       46.88        70.16        60.89        15.58       122.43         9.34 
TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-A5DI TCGA-22-0940 TCGA-22-0944 
       31.63        88.11        41.69        32.19        19.99         7.33 
TCGA-22-1000 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 
       14.93        64.21         1.74        14.10        27.02        48.82 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 
       20.48        35.08        48.33        24.13         0.56        38.17 
TCGA-22-4604 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12         9.57        11.77        31.73        64.93        63.55 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 
       14.63        44.25         0.79        54.28        71.34        79.20 
TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-22-A5C4 
       18.84        30.12        62.86        56.32        16.64         0.95 
TCGA-33-4532 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4583 TCGA-33-4586 
        7.63        97.94        43.10       173.82       141.34        14.07 
TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 
       19.76        27.02         2.63        61.61        31.50        28.96 
TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       32.88        50.24        67.79        56.38         9.07        23.24 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 
       12.00        14.07        30.94         4.96         3.95         0.43 
TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 
        0.39         6.58         8.12         3.39        47.80        74.07 
TCGA-39-5021 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
       68.58        70.03        60.79         1.71        24.33         1.94 
TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
       27.39        36.39        15.58        35.64        35.70        17.88 
TCGA-39-5040 TCGA-43-2576 TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 
       17.06        40.21        38.66        27.02        33.11        11.47 
TCGA-43-6143 TCGA-43-6647 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 
       12.36        24.89         5.46         3.81         6.97         7.76 
TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 TCGA-43-A474 TCGA-43-A475 
       66.51        13.38        11.77         2.93        11.61         9.73 
TCGA-43-A56U TCGA-43-A56V TCGA-46-3768 TCGA-46-6025 TCGA-51-4079 TCGA-51-4080 
       14.20        12.03         9.99        10.65         0.39         0.39 
TCGA-51-4081 TCGA-52-7622 TCGA-52-7811 TCGA-52-7812 TCGA-56-5897 TCGA-56-7221 
       29.95        17.79         8.75        27.45         0.10         0.99 
TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-56-8503 
        0.43         0.99         1.45         1.32         0.85         1.35 
TCGA-56-8504 TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 
        5.85         1.81         1.18         2.07         0.56         0.53 
TCGA-56-A4BW TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DR 
        0.07         1.51         0.99         0.82         0.13         0.13 
TCGA-56-A5DS TCGA-58-8386 TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 
        0.26         0.03        12.43        29.95        71.24        16.47 
TCGA-58-A46J TCGA-58-A46L TCGA-58-A46M TCGA-58-A46N TCGA-60-2695 TCGA-60-2696 
       64.87        36.59        23.24        17.75        21.11         3.58 
TCGA-60-2697 TCGA-60-2698 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 
       12.23        10.22        37.94        92.71        21.73        80.45 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2716 
       49.48        66.54        41.42         9.01        56.91        48.49 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2724 TCGA-60-2726 TCGA-66-2727 
        3.19        32.32        29.85        23.57        11.77        16.96 
TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2755 TCGA-66-2756 
        2.01        21.07         0.99         1.02         0.92         0.99 
TCGA-66-2758 TCGA-66-2763 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 
       21.01         0.99         2.01         2.01        23.01        19.00 
TCGA-66-2773 TCGA-66-2778 TCGA-66-2780 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
        3.02        19.00        12.03        12.00        24.95         1.97 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2792 
       25.97        40.01        22.98         4.04        22.98        30.02 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 
       54.08         4.01        49.05         2.73         6.64         6.94 
TCGA-68-8250 TCGA-68-A59I TCGA-68-A59J TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 
        8.02         3.98         3.42        29.56        73.12        75.09 
TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7335 TCGA-77-7337 
       23.28        11.18        89.98        20.78        70.13       106.95 
TCGA-77-7338 TCGA-77-7463 TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 TCGA-77-8128 
        0.16        46.78         6.51        86.76        53.95        37.81 
TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 
       12.59        53.92        39.09        17.72       104.09        11.54 
TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-77-8153 
       26.40        27.39         6.97         9.63        54.41        55.36 
TCGA-77-8154 TCGA-77-A5FZ TCGA-77-A5G3 TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6561 
       35.90       126.18       117.57        30.81        23.44        12.99 
TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 
        0.59         0.33         1.61         1.25         1.97         0.85 
TCGA-85-8049 TCGA-85-8070 TCGA-85-8071 TCGA-85-8277 TCGA-85-8288 TCGA-85-8350 
        1.97        16.77        14.07         0.36         1.78         1.97 
TCGA-85-8351 TCGA-85-8352 TCGA-85-8354 TCGA-85-8355 TCGA-85-8479 TCGA-85-8481 
        1.81         2.20         2.01         2.01         0.72         0.69 
TCGA-85-8580 TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL TCGA-85-A50M TCGA-85-A513 
       14.63         0.10        15.62         0.49         0.62         0.79 
TCGA-85-A53L TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 TCGA-90-7964 
        0.43        24.92         9.50         2.93        11.77        14.07 
TCGA-90-A4ED TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 
        8.02         2.70         3.48         4.01         5.26         2.30 
TCGA-94-7033 TCGA-94-7557 TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 
        2.86         0.16        39.88        44.19         6.21         6.94 
TCGA-96-A4JK TCGA-96-A4JL TCGA-98-8020 TCGA-98-8021 TCGA-98-8023 TCGA-J1-A4AH 
        8.98         6.02         2.76        13.58        10.13         7.30 
TCGA-L3-A4E7 TCGA-L3-A524 TCGA-NC-A5HI 
        1.15        14.76        37.32 

  6P GAIN MUTATED 6P GAIN WILD-TYPE 
             0.03              0.03 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
           119.80            173.82 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
            10.85             14.07 
[1] "0.0 - 119.8 (10.9)" "0.0 - 173.8 (14.1)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
  "6P GAIN MUTATED"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
  "6P GAIN MUTATED"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
  "6P GAIN MUTATED"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
  "6P GAIN MUTATED"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
  "6P GAIN MUTATED"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
  "6P GAIN MUTATED"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D11V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  6P GAIN MUTATED         0       14       29        1        12        14
  6P GAIN WILD-TYPE       1       55      107        0        38        56
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  6P GAIN MUTATED           12          6        1
  6P GAIN WILD-TYPE         42         14        4
D11V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  6P GAIN MUTATED    18  59   7   6
  6P GAIN WILD-TYPE  77 191  38  13
D11V4, multiclass
    clus
vv   6P GAIN MUTATED 6P GAIN WILD-TYPE
  T1              18                77
  T2              59               191
  T3               7                38
  T4               6                13
                   vv
clus                 N0  N1  N2  N3
  6P GAIN MUTATED    62  19   7   1
  6P GAIN WILD-TYPE 193  90  27   4
D11V5, multiclass
    clus
vv   6P GAIN MUTATED 6P GAIN WILD-TYPE
  N0              62               193
  N1              19                90
  N2               7                27
  N3               1                 4
                   vv
clus                 M0  M1  MX
  6P GAIN MUTATED    80   1   9
  6P GAIN WILD-TYPE 269   4  40
D11V6, multiclass
    clus
vv   6P GAIN MUTATED 6P GAIN WILD-TYPE
  M0              80               269
  M1               1                 4
  MX               9                40
D11V7, binary
                   cls
clus                  0   1
  6P GAIN MUTATED    20  70
  6P GAIN WILD-TYPE  84 235
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P GAIN MUTATED     20   70
  6P GAIN WILD-TYPE   84  235
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  FEMALE              20                84
  MALE                70               235
D11V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  6P GAIN MUTATED                                       4
  6P GAIN WILD-TYPE                                     8
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  6P GAIN MUTATED                                        1
  6P GAIN WILD-TYPE                                      5
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  6P GAIN MUTATED                                         1
  6P GAIN WILD-TYPE                                       0
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  6P GAIN MUTATED                                                            84
  6P GAIN WILD-TYPE                                                         306
D11V9, multiclass
                                                             clus
vv                                                            6P GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     4
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              84
                                                             clus
vv                                                            6P GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       8
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               306
D11V10, binary
                   cls
clus                  0   1
  6P GAIN MUTATED     3  87
  6P GAIN WILD-TYPE  10 309
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P GAIN MUTATED      3   87
  6P GAIN WILD-TYPE   10  309
     clus
vv    6P GAIN MUTATED 6P GAIN WILD-TYPE
  NO                3                10
  YES              87               309
D11V11, continuous
D11V12, continuous
                   vv
clus                 R0  R1  R2  RX
  6P GAIN MUTATED    74   3   1   2
  6P GAIN WILD-TYPE 258   5   3  16
D11V13, multiclass
    clus
vv   6P GAIN MUTATED 6P GAIN WILD-TYPE
  R0              74               258
  R1               3                 5
  R2               1                 3
  RX               2                16

Clustering(12) Variable = 6Q GAIN MUTATION ANALYSIS
D12V1, survival
                   sevent
clus2                 0   1
  6Q GAIN MUTATED    50  20
  6Q GAIN WILD-TYPE 194 119
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               70               313 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               20               119 
$`6Q GAIN MUTATED`
TCGA-21-1072 TCGA-21-1082 TCGA-21-1083 TCGA-21-5786 TCGA-22-4605 TCGA-22-5477 
       99.16       119.80         8.78        33.93        32.02        44.25 
TCGA-22-5482 TCGA-33-4533 TCGA-33-4547 TCGA-33-4587 TCGA-33-4589 TCGA-34-7107 
       11.74       114.05        43.10        54.44        10.82         1.12 
TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-39-5019 TCGA-43-2578 TCGA-43-3920 
        7.82         6.81         0.39        44.75        22.49        33.11 
TCGA-43-5670 TCGA-43-6770 TCGA-46-3768 TCGA-46-6026 TCGA-52-7809 TCGA-52-7810 
       18.05        10.19         9.99        13.91         5.46        30.35 
TCGA-52-7811 TCGA-56-1622 TCGA-56-6545 TCGA-56-6546 TCGA-56-7822 TCGA-56-A49D 
        8.75        28.96         2.04         0.62         0.03         1.25 
TCGA-56-A5DR TCGA-58-8387 TCGA-58-8393 TCGA-58-A46K TCGA-60-2703 TCGA-60-2714 
        0.13        13.25        34.78        34.36        96.82        50.33 
TCGA-60-2715 TCGA-60-2719 TCGA-60-2723 TCGA-60-2725 TCGA-66-2734 TCGA-66-2757 
       35.34        42.64        35.90        26.83        43.10         0.99 
TCGA-66-2759 TCGA-66-2765 TCGA-66-2769 TCGA-66-2777 TCGA-66-2781 TCGA-66-2786 
       25.05         2.01         7.07         2.01         3.98        25.97 
TCGA-66-2789 TCGA-66-2793 TCGA-68-8251 TCGA-77-7142 TCGA-77-7465 TCGA-77-8130 
        4.04        10.06         3.16        42.28        15.75        82.92 
TCGA-85-6798 TCGA-85-7699 TCGA-85-7843 TCGA-85-7950 TCGA-85-8276 TCGA-85-8287 
        1.12         0.03         1.15         1.97         0.43         1.45 
TCGA-85-8352 TCGA-85-8353 TCGA-85-8666 TCGA-90-A4EE TCGA-94-7943 TCGA-98-7454 
        2.20         1.78        15.62        10.88        11.70         8.42 
TCGA-98-8022 TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE 
        7.36         1.18         2.73        56.61 

$`6Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.01        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.64 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.54         3.02        27.19 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 
      119.54        46.88        70.16        60.89        34.78        15.58 
TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 
       31.73       122.43         9.34        31.63        88.11        41.69 
TCGA-21-5787 TCGA-21-A5DI TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 
       10.82        32.19        19.99         7.33        14.93         4.31 
TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 
       64.21         1.74        14.10        27.02        48.82        20.48 
TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 
       35.08        48.33        24.13         0.56        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       13.12        19.30         9.57        11.77        31.73        64.93 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 
       63.55        14.63         0.79        54.28        71.34        79.20 
TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-22-A5C4 
       18.84        30.12        62.86        56.32        16.64         0.95 
TCGA-33-4532 TCGA-33-4538 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 
        7.63        97.94       173.82       103.53       141.34        14.07 
TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 
       19.76        27.02         2.63        61.61        31.50        28.96 
TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       32.88        31.27        50.24        67.79        56.38         9.07 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       23.24        12.00        14.07        30.94        18.15         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 
        3.95         0.43         0.39         6.58         8.12         7.46 
TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
        3.39        47.80        74.07        68.58        55.20        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 
       60.79         1.71        24.33         1.94        27.39        36.39 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-39-5040 TCGA-43-2576 
       15.58        35.64        35.70        17.88        17.06        40.21 
TCGA-43-2581 TCGA-43-3394 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6771 
       38.66        27.02        11.47        12.36        24.89         5.46 
TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 
        3.81         6.97         7.76        66.51        13.38        11.77 
TCGA-43-8118 TCGA-43-A474 TCGA-43-A475 TCGA-43-A56U TCGA-43-A56V TCGA-46-6025 
        2.93        11.61         9.73        14.20        12.03        10.65 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7812 TCGA-56-5897 
        0.39         0.39        29.95        17.79        27.45         0.10 
TCGA-56-5898 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 
       18.25         0.99         0.43         0.99         1.45         1.32 
TCGA-56-7582 TCGA-56-7730 TCGA-56-8503 TCGA-56-8504 TCGA-56-8622 TCGA-56-8624 
        0.85         0.20         1.35         5.85         1.81         1.18 
TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 TCGA-56-A4BW TCGA-56-A4BX 
        2.07         0.56         0.53         1.12         0.07         1.51 
TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DS TCGA-58-8386 TCGA-58-8388 
        0.99         0.82         0.13         0.26         0.03        12.43 
TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 TCGA-58-A46J TCGA-58-A46L TCGA-58-A46M 
       29.95        71.24        16.47        64.87        36.59        23.24 
TCGA-58-A46N TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2704 
       17.75        21.11         3.58        12.23        10.22        37.94 
TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       92.71        21.73        80.45        49.48        66.54        41.42 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2716 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
        9.01        56.91        48.49         3.19        32.32        29.85 
TCGA-60-2724 TCGA-60-2726 TCGA-66-2727 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 
       23.57        11.77        16.96         2.01        21.07         0.99 
TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2758 TCGA-66-2763 
        1.02         2.01         0.92         0.99        21.01         0.99 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 
        1.02         2.01         2.01        23.01        19.00         3.02 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2787 
       19.00        12.03        12.00        24.95         1.97        40.01 
TCGA-66-2788 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2794 TCGA-66-2795 
       22.98        22.98         5.03        30.02        54.08         4.01 
TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 TCGA-68-A59I 
       49.05         2.73         6.64         6.94         8.02         3.98 
TCGA-68-A59J TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 
        3.42        29.56        73.12        75.09        23.28        11.18 
TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 
       89.98        20.78         0.49        70.13       106.95         0.16 
TCGA-77-7463 TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 TCGA-77-8128 TCGA-77-8131 
       46.78         6.51        86.76        53.95        37.81        12.59 
TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 
       53.92        39.09        17.72       104.09        11.54        26.40 
TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-77-8153 TCGA-77-8154 
       27.39         6.97         9.63        54.41        55.36        35.90 
TCGA-77-8156 TCGA-77-A5FZ TCGA-77-A5G3 TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6175 
        0.33       126.18       117.57        30.81        23.44         9.67 
TCGA-85-6560 TCGA-85-6561 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7844 
        0.36        12.99         0.59         0.33         1.61         1.25 
TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 
        0.85         1.97         0.53        16.77        14.07        16.87 
TCGA-85-8277 TCGA-85-8288 TCGA-85-8350 TCGA-85-8351 TCGA-85-8354 TCGA-85-8355 
        0.36         1.78         1.97         1.81         2.01         2.01 
TCGA-85-8479 TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 TCGA-85-A4CL 
        0.72         0.69        14.63        13.94         0.10         0.49 
TCGA-85-A4QR TCGA-85-A50M TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 TCGA-90-7766 
        0.82         0.62         0.79         0.43        24.92         9.50 
TCGA-90-7767 TCGA-90-7769 TCGA-90-7964 TCGA-90-A4ED TCGA-92-7340 TCGA-92-7341 
        2.93        11.77        14.07         8.02         2.70         3.48 
TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-96-7544 
        4.01         5.26         2.30         2.86         0.16        39.88 
TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 TCGA-96-A4JK TCGA-96-A4JL TCGA-98-8020 
       44.19         6.21         6.94         8.98         6.02         2.76 
TCGA-98-8021 TCGA-98-8023 TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-L3-A524 TCGA-NC-A5HG 
       13.58        10.13         7.30         1.15        14.76        50.89 
TCGA-NC-A5HI 
       37.32 

  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
             0.03              0.03 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
           119.80            173.82 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
            10.85             14.07 
[1] "0.0 - 119.8 (10.9)" "0.0 - 173.8 (14.1)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
  "6Q GAIN MUTATED"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
  "6Q GAIN MUTATED"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
  "6Q GAIN MUTATED"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D12V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  6Q GAIN MUTATED         0       12       29        1         8        11
  6Q GAIN WILD-TYPE       1       57      107        0        42        59
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  6Q GAIN MUTATED            7          6        0
  6Q GAIN WILD-TYPE         47         14        5
D12V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  6Q GAIN MUTATED    15  48   6   5
  6Q GAIN WILD-TYPE  80 202  39  14
D12V4, multiclass
    clus
vv   6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  T1              15                80
  T2              48               202
  T3               6                39
  T4               5                14
                   vv
clus                 N0  N1  N2  N3
  6Q GAIN MUTATED    52  17   3   1
  6Q GAIN WILD-TYPE 203  92  31   4
D12V5, multiclass
    clus
vv   6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  N0              52               203
  N1              17                92
  N2               3                31
  N3               1                 4
                   vv
clus                 M0  M1  MX
  6Q GAIN MUTATED    65   0   9
  6Q GAIN WILD-TYPE 284   5  40
D12V6, multiclass
    clus
vv   6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  M0              65               284
  M1               0                 5
  MX               9                40
D12V7, binary
                   cls
clus                  0   1
  6Q GAIN MUTATED    18  56
  6Q GAIN WILD-TYPE  86 249
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q GAIN MUTATED     18   56
  6Q GAIN WILD-TYPE   86  249
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  FEMALE              18                86
  MALE                56               249
D12V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  6Q GAIN MUTATED                                       2
  6Q GAIN WILD-TYPE                                    10
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  6Q GAIN MUTATED                                        0
  6Q GAIN WILD-TYPE                                      6
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  6Q GAIN MUTATED                                         1
  6Q GAIN WILD-TYPE                                       0
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  6Q GAIN MUTATED                                                            71
  6Q GAIN WILD-TYPE                                                         319
D12V9, multiclass
                                                             clus
vv                                                            6Q GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     2
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    0
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              71
                                                             clus
vv                                                            6Q GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      10
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      6
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               319
D12V10, binary
                   cls
clus                  0   1
  6Q GAIN MUTATED     2  72
  6Q GAIN WILD-TYPE  11 324
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q GAIN MUTATED      2   72
  6Q GAIN WILD-TYPE   11  324
     clus
vv    6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  NO                2                11
  YES              72               324
D12V11, continuous
D12V12, continuous
                   vv
clus                 R0  R1  R2  RX
  6Q GAIN MUTATED    60   2   1   3
  6Q GAIN WILD-TYPE 272   6   3  15
D12V13, multiclass
    clus
vv   6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  R0              60               272
  R1               2                 6
  R2               1                 3
  RX               3                15

Clustering(13) Variable = 7P GAIN MUTATION ANALYSIS
D13V1, survival
                   sevent
clus2                 0   1
  7P GAIN MUTATED   125  62
  7P GAIN WILD-TYPE 119  77
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
              187               196 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
               62                77 
$`7P GAIN MUTATED`
TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3411 TCGA-18-3412 TCGA-18-3414 
        4.47        81.01        79.46        46.52        11.34        13.02 
TCGA-18-3417 TCGA-18-3421 TCGA-18-4083 TCGA-18-4721 TCGA-18-5592 TCGA-21-1070 
       24.92        43.76         6.15        90.54         3.02       119.54 
TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1079 TCGA-21-1081 TCGA-21-5783 
       99.16        70.16        60.89        31.73         9.34        88.11 
TCGA-21-5784 TCGA-22-0944 TCGA-22-1011 TCGA-22-1012 TCGA-22-4591 TCGA-22-4593 
       41.69         7.33         1.74        14.10        20.48        35.08 
TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4604 TCGA-22-4605 TCGA-22-5471 
       24.13         0.56        38.17        13.12        32.02        31.73 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5482 
       64.93        63.55        44.25         0.79        54.28        11.74 
TCGA-22-5483 TCGA-22-5491 TCGA-22-A5C4 TCGA-33-4533 TCGA-33-4538 TCGA-33-4566 
       18.84        56.32         0.95       114.05        97.94       173.82 
TCGA-33-4582 TCGA-33-4586 TCGA-33-4589 TCGA-34-2596 TCGA-34-2605 TCGA-34-2609 
      103.53        14.07        10.82         2.63        28.96        31.27 
TCGA-34-5231 TCGA-34-5234 TCGA-34-5236 TCGA-34-5240 TCGA-34-5241 TCGA-34-5928 
       50.24        56.38         9.07        12.00        14.07        18.15 
TCGA-37-3783 TCGA-37-3792 TCGA-37-4130 TCGA-37-4135 TCGA-37-4141 TCGA-39-5011 
        3.95         0.39         8.12         6.81         0.39        47.80 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5031 TCGA-39-5035 TCGA-39-5037 TCGA-43-2576 
       74.07        44.75        27.39        15.58        35.70        40.21 
TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6647 
       38.66        27.02        33.11        11.47        18.05        24.89 
TCGA-43-6771 TCGA-43-6773 TCGA-43-7657 TCGA-43-A474 TCGA-43-A475 TCGA-43-A56V 
        5.46         3.81         7.76        11.61         9.73        12.03 
TCGA-46-3768 TCGA-46-6025 TCGA-51-4079 TCGA-51-4081 TCGA-52-7809 TCGA-56-7221 
        9.99        10.65         0.39        29.95         5.46         0.99 
TCGA-56-7223 TCGA-56-7579 TCGA-56-7582 TCGA-56-8504 TCGA-56-8624 TCGA-56-8626 
        0.99         1.45         0.85         5.85         1.18         0.56 
TCGA-56-A49D TCGA-56-A4BW TCGA-56-A4BX TCGA-56-A5DR TCGA-58-8391 TCGA-58-8392 
        1.25         0.07         1.51         0.13        71.24        16.47 
TCGA-58-8393 TCGA-58-A46M TCGA-58-A46N TCGA-60-2704 TCGA-60-2706 TCGA-60-2708 
       34.78        23.24        17.75        37.94        92.71        80.45 
TCGA-60-2709 TCGA-60-2711 TCGA-60-2713 TCGA-60-2714 TCGA-60-2719 TCGA-60-2722 
       49.48        41.42        56.91        50.33        42.64        29.85 
TCGA-60-2723 TCGA-60-2726 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 
       35.90        11.77        43.10         2.01        21.07         0.99 
TCGA-66-2755 TCGA-66-2759 TCGA-66-2763 TCGA-66-2766 TCGA-66-2767 TCGA-66-2770 
        0.92        25.05         0.99         1.02         2.01        23.01 
TCGA-66-2771 TCGA-66-2777 TCGA-66-2780 TCGA-66-2782 TCGA-66-2785 TCGA-66-2787 
       19.00         2.01        12.03        12.00         1.97        40.01 
TCGA-66-2791 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-8250 TCGA-68-A59J 
        5.03         4.01        49.05         2.73         8.02         3.42 
TCGA-77-6845 TCGA-77-7138 TCGA-77-7140 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 
       23.28        11.18        20.78         0.16        46.78        15.75 
TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 TCGA-77-8128 TCGA-77-8130 TCGA-77-8133 
        6.51        86.76        53.95        37.81        82.92        53.92 
TCGA-77-8136 TCGA-77-8139 TCGA-77-8148 TCGA-77-8150 TCGA-77-8156 TCGA-77-A5G3 
       39.09       104.09         9.63        54.41         0.33       117.57 
TCGA-77-A5GB TCGA-85-6175 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 
       30.81         9.67        12.99         1.12         0.59         0.33 
TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 TCGA-85-8049 TCGA-85-8052 TCGA-85-8072 
        1.15         1.25         1.97         1.97         0.53        16.87 
TCGA-85-8276 TCGA-85-8352 TCGA-85-8354 TCGA-85-8664 TCGA-85-8666 TCGA-85-A4QR 
        0.43         2.20         2.01         0.10        15.62         0.82 
TCGA-85-A50M TCGA-85-A513 TCGA-85-A53L TCGA-90-7769 TCGA-90-A4ED TCGA-90-A4EE 
        0.62         0.79         0.43        11.77         8.02        10.88 
TCGA-92-7341 TCGA-92-8064 TCGA-94-7557 TCGA-96-7545 TCGA-96-A4JK TCGA-96-A4JL 
        3.48         5.26         0.16        44.19         8.98         6.02 
TCGA-98-8023 TCGA-L3-A4E7 TCGA-L3-A524 TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HG 
       10.13         1.15        14.76         2.73        56.61        50.89 
TCGA-NC-A5HI 
       37.32 

$`7P GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3410 TCGA-18-3415 TCGA-18-3416 TCGA-18-3419 TCGA-18-4086 
       12.16         4.80        59.51        28.34         1.64         2.79 
TCGA-18-5595 TCGA-21-1071 TCGA-21-1077 TCGA-21-1078 TCGA-21-1080 TCGA-21-1082 
       27.19        46.88        34.78        15.58       122.43       119.80 
TCGA-21-1083 TCGA-21-5782 TCGA-21-5786 TCGA-21-5787 TCGA-21-A5DI TCGA-22-0940 
        8.78        31.63        33.93        10.82        32.19        19.99 
TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1016 TCGA-22-1017 TCGA-22-4594 
       14.93         4.31        64.21        27.02        48.82        48.33 
TCGA-22-4601 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5474 TCGA-22-5480 
       34.75        19.30         9.57        11.77        14.63        71.34 
TCGA-22-5481 TCGA-22-5485 TCGA-22-5489 TCGA-22-5492 TCGA-33-4532 TCGA-33-4547 
       79.20        30.12        62.86        16.64         7.63        43.10 
TCGA-33-4583 TCGA-33-4587 TCGA-33-6737 TCGA-33-6738 TCGA-34-2600 TCGA-34-2604 
      141.34        54.44        19.76        27.02        61.61        31.50 
TCGA-34-2608 TCGA-34-5232 TCGA-34-5239 TCGA-34-5927 TCGA-34-5929 TCGA-34-7107 
       32.88        67.79        23.24        30.94         4.96         1.12 
TCGA-37-3789 TCGA-37-4129 TCGA-37-4132 TCGA-37-4133 TCGA-37-5819 TCGA-39-5021 
        0.43         6.58         7.46         7.82         3.39        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
       55.20        70.03        60.79         1.71        24.33         1.94 
TCGA-39-5034 TCGA-39-5036 TCGA-39-5039 TCGA-39-5040 TCGA-43-2578 TCGA-43-6143 
       36.39        35.64        17.88        17.06        22.49        12.36 
TCGA-43-6770 TCGA-43-7656 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 
       10.19         6.97        66.51        13.38        11.77         2.93 
TCGA-43-A56U TCGA-46-6026 TCGA-51-4080 TCGA-52-7622 TCGA-52-7810 TCGA-52-7811 
       14.20        13.91         0.39        17.79        30.35         8.75 
TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-5898 TCGA-56-6545 TCGA-56-6546 
       27.45        28.96         0.10        18.25         2.04         0.62 
TCGA-56-7222 TCGA-56-7580 TCGA-56-7730 TCGA-56-7822 TCGA-56-8503 TCGA-56-8622 
        0.43         1.32         0.20         0.03         1.35         1.81 
TCGA-56-8625 TCGA-56-8628 TCGA-56-8629 TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A4ZK 
        2.07         0.53         1.12         0.99         0.82         0.13 
TCGA-56-A5DS TCGA-58-8386 TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 TCGA-58-A46J 
        0.26         0.03        13.25        12.43        29.95        64.87 
TCGA-58-A46K TCGA-58-A46L TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 
       34.36        36.59        21.11         3.58        12.23        10.22 
TCGA-60-2703 TCGA-60-2707 TCGA-60-2710 TCGA-60-2712 TCGA-60-2715 TCGA-60-2716 
       96.82        21.73        66.54         9.01        35.34        48.49 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2724 TCGA-60-2725 TCGA-66-2727 TCGA-66-2753 
        3.19        32.32        23.57        26.83        16.96         1.02 
TCGA-66-2754 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2765 TCGA-66-2768 
        2.01         0.99         0.99        21.01         2.01         2.01 
TCGA-66-2769 TCGA-66-2773 TCGA-66-2778 TCGA-66-2781 TCGA-66-2783 TCGA-66-2786 
        7.07         3.02        19.00         3.98        24.95        25.97 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
       22.98         4.04        22.98        30.02        10.06        54.08 
TCGA-68-7756 TCGA-68-7757 TCGA-68-8251 TCGA-68-A59I TCGA-77-6842 TCGA-77-6843 
        6.64         6.94         3.16         3.98        29.56        73.12 
TCGA-77-6844 TCGA-77-7139 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 
       75.09        89.98         0.49        42.28        70.13       106.95 
TCGA-77-8131 TCGA-77-8138 TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 
       12.59        17.72        11.54        26.40        27.39         6.97 
TCGA-77-8153 TCGA-77-8154 TCGA-77-A5FZ TCGA-77-A5GH TCGA-85-6560 TCGA-85-7698 
       55.36        35.90       126.18        23.44         0.36         1.61 
TCGA-85-7699 TCGA-85-8048 TCGA-85-8070 TCGA-85-8071 TCGA-85-8277 TCGA-85-8287 
        0.03         0.85        16.77        14.07         0.36         1.45 
TCGA-85-8288 TCGA-85-8350 TCGA-85-8351 TCGA-85-8353 TCGA-85-8355 TCGA-85-8479 
        1.78         1.97         1.81         1.78         2.01         0.72 
TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 TCGA-85-A4CL TCGA-90-6837 TCGA-90-7766 
        0.69        14.63        13.94         0.49        24.92         9.50 
TCGA-90-7767 TCGA-90-7964 TCGA-92-7340 TCGA-92-8063 TCGA-92-8065 TCGA-94-7033 
        2.93        14.07         2.70         4.01         2.30         2.86 
TCGA-94-7943 TCGA-96-7544 TCGA-96-8169 TCGA-96-8170 TCGA-98-7454 TCGA-98-8020 
       11.70        39.88         6.21         6.94         8.42         2.76 
TCGA-98-8021 TCGA-98-8022 TCGA-J1-A4AH TCGA-LA-A446 
       13.58         7.36         7.30         1.18 

  7P GAIN MUTATED 7P GAIN WILD-TYPE 
             0.07              0.03 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
           173.82            141.34 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
            13.12             13.48 
[1] "0.1 - 173.8 (13.1)" "0.0 - 141.3 (13.5)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
[1] "hr=" "1.4"
D13V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  7P GAIN MUTATED         0       22       72        0        25        41
  7P GAIN WILD-TYPE       1       47       64        1        25        29
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  7P GAIN MUTATED           26          7        3
  7P GAIN WILD-TYPE         28         13        2
D13V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  7P GAIN MUTATED    33 132  28   5
  7P GAIN WILD-TYPE  62 118  17  14
D13V4, multiclass
    clus
vv   7P GAIN MUTATED 7P GAIN WILD-TYPE
  T1              33                62
  T2             132               118
  T3              28                17
  T4               5                14
                   vv
clus                 N0  N1  N2  N3
  7P GAIN MUTATED   118  61  14   2
  7P GAIN WILD-TYPE 137  48  20   3
D13V5, multiclass
    clus
vv   7P GAIN MUTATED 7P GAIN WILD-TYPE
  N0             118               137
  N1              61                48
  N2              14                20
  N3               2                 3
                   vv
clus                 M0  M1  MX
  7P GAIN MUTATED   171   3  21
  7P GAIN WILD-TYPE 178   2  28
D13V6, multiclass
    clus
vv   7P GAIN MUTATED 7P GAIN WILD-TYPE
  M0             171               178
  M1               3                 2
  MX              21                28
D13V7, binary
                   cls
clus                  0   1
  7P GAIN MUTATED    44 154
  7P GAIN WILD-TYPE  60 151
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P GAIN MUTATED     44  154
  7P GAIN WILD-TYPE   60  151
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  FEMALE              44                60
  MALE               154               151
D13V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  7P GAIN MUTATED                                       6
  7P GAIN WILD-TYPE                                     6
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  7P GAIN MUTATED                                        1
  7P GAIN WILD-TYPE                                      5
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  7P GAIN MUTATED                                         0
  7P GAIN WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  7P GAIN MUTATED                                                           191
  7P GAIN WILD-TYPE                                                         199
D13V9, multiclass
                                                             clus
vv                                                            7P GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     6
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             191
                                                             clus
vv                                                            7P GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       6
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               199
D13V10, binary
                   cls
clus                  0   1
  7P GAIN MUTATED     5 193
  7P GAIN WILD-TYPE   8 203
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P GAIN MUTATED      5  193
  7P GAIN WILD-TYPE    8  203
     clus
vv    7P GAIN MUTATED 7P GAIN WILD-TYPE
  NO                5                 8
  YES             193               203
D13V11, continuous
D13V12, continuous
                   vv
clus                 R0  R1  R2  RX
  7P GAIN MUTATED   165   4   1   7
  7P GAIN WILD-TYPE 167   4   3  11
D13V13, multiclass
    clus
vv   7P GAIN MUTATED 7P GAIN WILD-TYPE
  R0             165               167
  R1               4                 4
  R2               1                 3
  RX               7                11

Clustering(14) Variable = 7Q GAIN MUTATION ANALYSIS
D14V1, survival
                   sevent
clus2                 0   1
  7Q GAIN MUTATED   113  62
  7Q GAIN WILD-TYPE 131  77
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
              175               208 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
               62                77 
$`7Q GAIN MUTATED`
TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3411 TCGA-18-3412 TCGA-18-3414 
        4.47        81.01        79.46        46.52        11.34        13.02 
TCGA-18-3417 TCGA-18-4083 TCGA-18-4721 TCGA-21-1070 TCGA-21-1075 TCGA-21-1076 
       24.92         6.15        90.54       119.54        70.16        60.89 
TCGA-21-1077 TCGA-21-1079 TCGA-21-1081 TCGA-21-5783 TCGA-21-5787 TCGA-21-A5DI 
       34.78        31.73         9.34        88.11        10.82        32.19 
TCGA-22-1011 TCGA-22-1012 TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 
        1.74        14.10        20.48        35.08        48.33        24.13 
TCGA-22-4596 TCGA-22-4599 TCGA-22-4604 TCGA-22-4605 TCGA-22-5471 TCGA-22-5472 
        0.56        38.17        13.12        32.02        31.73        64.93 
TCGA-22-5473 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5482 TCGA-22-5483 
       63.55        44.25         0.79        54.28        11.74        18.84 
TCGA-22-5491 TCGA-22-5492 TCGA-22-A5C4 TCGA-33-4533 TCGA-33-4538 TCGA-33-4586 
       56.32        16.64         0.95       114.05        97.94        14.07 
TCGA-33-4589 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2605 TCGA-34-2609 
       10.82        27.02         2.63        61.61        28.96        31.27 
TCGA-34-5231 TCGA-34-5236 TCGA-34-5240 TCGA-34-5241 TCGA-34-5928 TCGA-34-7107 
       50.24         9.07        12.00        14.07        18.15         1.12 
TCGA-37-3783 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-39-5011 TCGA-39-5019 
        3.95         7.82         6.81         0.39        47.80        44.75 
TCGA-39-5027 TCGA-39-5031 TCGA-39-5035 TCGA-39-5037 TCGA-43-3394 TCGA-43-3920 
       60.79        27.39        15.58        35.70        27.02        33.11 
TCGA-43-5668 TCGA-43-6647 TCGA-43-6773 TCGA-43-7657 TCGA-43-A474 TCGA-43-A475 
       11.47        24.89         3.81         7.76        11.61         9.73 
TCGA-43-A56V TCGA-46-3768 TCGA-46-6025 TCGA-51-4079 TCGA-51-4081 TCGA-52-7809 
       12.03         9.99        10.65         0.39        29.95         5.46 
TCGA-52-7810 TCGA-56-5898 TCGA-56-7221 TCGA-56-7223 TCGA-56-7579 TCGA-56-7582 
       30.35        18.25         0.99         0.99         1.45         0.85 
TCGA-56-8504 TCGA-56-A49D TCGA-56-A4BX TCGA-56-A5DR TCGA-58-8386 TCGA-58-8392 
        5.85         1.25         1.51         0.13         0.03        16.47 
TCGA-58-8393 TCGA-58-A46K TCGA-58-A46M TCGA-58-A46N TCGA-60-2704 TCGA-60-2706 
       34.78        34.36        23.24        17.75        37.94        92.71 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2711 TCGA-60-2713 TCGA-60-2714 TCGA-60-2719 
       80.45        49.48        41.42        56.91        50.33        42.64 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2726 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 
       29.85        35.90        11.77        43.10         2.01        21.07 
TCGA-66-2755 TCGA-66-2758 TCGA-66-2763 TCGA-66-2766 TCGA-66-2767 TCGA-66-2770 
        0.92        21.01         0.99         1.02         2.01        23.01 
TCGA-66-2771 TCGA-66-2777 TCGA-66-2780 TCGA-66-2782 TCGA-66-2785 TCGA-66-2787 
       19.00         2.01        12.03        12.00         1.97        40.01 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 
        5.03        30.02        54.08         4.01        49.05         2.73 
TCGA-68-8250 TCGA-77-6845 TCGA-77-7141 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 
        8.02        23.28         0.49         0.16        46.78        15.75 
TCGA-77-8007 TCGA-77-8009 TCGA-77-8128 TCGA-77-8130 TCGA-77-8133 TCGA-77-8143 
        6.51        53.95        37.81        82.92        53.92        26.40 
TCGA-77-8148 TCGA-77-8150 TCGA-77-8153 TCGA-77-8156 TCGA-85-6175 TCGA-85-6561 
        9.63        54.41        55.36         0.33         9.67        12.99 
TCGA-85-6798 TCGA-85-7696 TCGA-85-7843 TCGA-85-7950 TCGA-85-8049 TCGA-85-8052 
        1.12         0.59         1.15         1.97         1.97         0.53 
TCGA-85-8070 TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 TCGA-85-8352 TCGA-85-8354 
       16.77        16.87         0.43         0.36         2.20         2.01 
TCGA-85-8666 TCGA-85-A4QR TCGA-85-A50M TCGA-90-7769 TCGA-90-A4ED TCGA-90-A4EE 
       15.62         0.82         0.62        11.77         8.02        10.88 
TCGA-92-7341 TCGA-96-7545 TCGA-96-8169 TCGA-96-A4JK TCGA-96-A4JL TCGA-98-8023 
        3.48        44.19         6.21         8.98         6.02        10.13 
TCGA-L3-A4E7 TCGA-L3-A524 TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HG 
        1.15        14.76         1.18         2.73        56.61        50.89 
TCGA-NC-A5HI 
       37.32 

$`7Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3410 TCGA-18-3415 TCGA-18-3416 TCGA-18-3419 TCGA-18-3421 
       12.16         4.80        59.51        28.34         1.64        43.76 
TCGA-18-4086 TCGA-18-5592 TCGA-18-5595 TCGA-21-1071 TCGA-21-1072 TCGA-21-1078 
        2.79         3.02        27.19        46.88        99.16        15.58 
TCGA-21-1080 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 
      122.43       119.80         8.78        31.63        41.69        33.93 
TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1016 
       19.99         7.33        14.93         4.31        64.21        27.02 
TCGA-22-1017 TCGA-22-4601 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5474 
       48.82        34.75        19.30         9.57        11.77        14.63 
TCGA-22-5480 TCGA-22-5481 TCGA-22-5485 TCGA-22-5489 TCGA-33-4532 TCGA-33-4547 
       71.34        79.20        30.12        62.86         7.63        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4587 TCGA-33-6737 TCGA-34-2604 
      173.82       103.53       141.34        54.44        19.76        31.50 
TCGA-34-2608 TCGA-34-5232 TCGA-34-5234 TCGA-34-5239 TCGA-34-5927 TCGA-34-5929 
       32.88        67.79        56.38        23.24        30.94         4.96 
TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-5819 
        0.43         0.39         6.58         8.12         7.46         3.39 
TCGA-39-5016 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 TCGA-39-5029 
       74.07        68.58        55.20        70.03         1.71        24.33 
TCGA-39-5030 TCGA-39-5034 TCGA-39-5036 TCGA-39-5039 TCGA-39-5040 TCGA-43-2576 
        1.94        36.39        35.64        17.88        17.06        40.21 
TCGA-43-2578 TCGA-43-2581 TCGA-43-5670 TCGA-43-6143 TCGA-43-6770 TCGA-43-6771 
       22.49        38.66        18.05        12.36        10.19         5.46 
TCGA-43-7656 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 TCGA-43-A56U 
        6.97        66.51        13.38        11.77         2.93        14.20 
TCGA-46-6026 TCGA-51-4080 TCGA-52-7622 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 
       13.91         0.39        17.79         8.75        27.45        28.96 
TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7222 TCGA-56-7580 TCGA-56-7730 
        0.10         2.04         0.62         0.43         1.32         0.20 
TCGA-56-7822 TCGA-56-8503 TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 
        0.03         1.35         1.81         1.18         2.07         0.56 
TCGA-56-8628 TCGA-56-8629 TCGA-56-A4BW TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A4ZK 
        0.53         1.12         0.07         0.99         0.82         0.13 
TCGA-56-A5DS TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 TCGA-58-A46J 
        0.26        13.25        12.43        29.95        71.24        64.87 
TCGA-58-A46L TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 
       36.59        21.11         3.58        12.23        10.22        96.82 
TCGA-60-2707 TCGA-60-2710 TCGA-60-2712 TCGA-60-2715 TCGA-60-2716 TCGA-60-2720 
       21.73        66.54         9.01        35.34        48.49         3.19 
TCGA-60-2721 TCGA-60-2724 TCGA-60-2725 TCGA-66-2727 TCGA-66-2744 TCGA-66-2753 
       32.32        23.57        26.83        16.96         0.99         1.02 
TCGA-66-2754 TCGA-66-2756 TCGA-66-2757 TCGA-66-2759 TCGA-66-2765 TCGA-66-2768 
        2.01         0.99         0.99        25.05         2.01         2.01 
TCGA-66-2769 TCGA-66-2773 TCGA-66-2778 TCGA-66-2781 TCGA-66-2783 TCGA-66-2786 
        7.07         3.02        19.00         3.98        24.95        25.97 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2793 TCGA-68-7756 TCGA-68-7757 
       22.98         4.04        22.98        10.06         6.64         6.94 
TCGA-68-8251 TCGA-68-A59I TCGA-68-A59J TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 
        3.16         3.98         3.42        29.56        73.12        75.09 
TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 
       11.18        89.98        20.78        42.28        70.13       106.95 
TCGA-77-8008 TCGA-77-8131 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 
       86.76        12.59        39.09        17.72       104.09        11.54 
TCGA-77-8144 TCGA-77-8145 TCGA-77-8154 TCGA-77-A5FZ TCGA-77-A5G3 TCGA-77-A5GB 
       27.39         6.97        35.90       126.18       117.57        30.81 
TCGA-77-A5GH TCGA-85-6560 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7844 
       23.44         0.36         0.33         1.61         0.03         1.25 
TCGA-85-8048 TCGA-85-8071 TCGA-85-8287 TCGA-85-8288 TCGA-85-8350 TCGA-85-8351 
        0.85        14.07         1.45         1.78         1.97         1.81 
TCGA-85-8353 TCGA-85-8355 TCGA-85-8479 TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 
        1.78         2.01         0.72         0.69        14.63        13.94 
TCGA-85-8664 TCGA-85-A4CL TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 TCGA-90-7766 
        0.10         0.49         0.79         0.43        24.92         9.50 
TCGA-90-7767 TCGA-90-7964 TCGA-92-7340 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 
        2.93        14.07         2.70         4.01         5.26         2.30 
TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 TCGA-96-8170 TCGA-98-7454 
        2.86         0.16        11.70        39.88         6.94         8.42 
TCGA-98-8020 TCGA-98-8021 TCGA-98-8022 TCGA-J1-A4AH 
        2.76        13.58         7.36         7.30 

  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
             0.03              0.03 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
           119.54            173.82 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
           14.760            12.395 
[1] "0.0 - 119.5 (14.8)" "0.0 - 173.8 (12.4)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
[1] "hr=" "1"  
D14V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  7Q GAIN MUTATED         1       21       62        1        21        36
  7Q GAIN WILD-TYPE       0       48       74        0        29        34
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  7Q GAIN MUTATED           29          9        4
  7Q GAIN WILD-TYPE         25         11        1
D14V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  7Q GAIN MUTATED    34 118  27   7
  7Q GAIN WILD-TYPE  61 132  18  12
D14V4, multiclass
    clus
vv   7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  T1              34                61
  T2             118               132
  T3              27                18
  T4               7                12
                   vv
clus                 N0  N1  N2  N3
  7Q GAIN MUTATED   107  57  18   2
  7Q GAIN WILD-TYPE 148  52  16   3
D14V5, multiclass
    clus
vv   7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  N0             107               148
  N1              57                52
  N2              18                16
  N3               2                 3
                   vv
clus                 M0  M1  MX
  7Q GAIN MUTATED   161   4  18
  7Q GAIN WILD-TYPE 188   1  31
D14V6, multiclass
    clus
vv   7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  M0             161               188
  M1               4                 1
  MX              18                31
D14V7, binary
                   cls
clus                  0   1
  7Q GAIN MUTATED    40 146
  7Q GAIN WILD-TYPE  64 159
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q GAIN MUTATED     40  146
  7Q GAIN WILD-TYPE   64  159
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  FEMALE              40                64
  MALE               146               159
D14V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  7Q GAIN MUTATED                                       6
  7Q GAIN WILD-TYPE                                     6
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  7Q GAIN MUTATED                                        1
  7Q GAIN WILD-TYPE                                      5
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  7Q GAIN MUTATED                                         0
  7Q GAIN WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  7Q GAIN MUTATED                                                           179
  7Q GAIN WILD-TYPE                                                         211
D14V9, multiclass
                                                             clus
vv                                                            7Q GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     6
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             179
                                                             clus
vv                                                            7Q GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       6
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               211
D14V10, binary
                   cls
clus                  0   1
  7Q GAIN MUTATED     5 181
  7Q GAIN WILD-TYPE   8 215
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q GAIN MUTATED      5  181
  7Q GAIN WILD-TYPE    8  215
     clus
vv    7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  NO                5                 8
  YES             181               215
D14V11, continuous
D14V12, continuous
                   vv
clus                 R0  R1  R2  RX
  7Q GAIN MUTATED   153   4   1   5
  7Q GAIN WILD-TYPE 179   4   3  13
D14V13, multiclass
    clus
vv   7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  R0             153               179
  R1               4                 4
  R2               1                 3
  RX               5                13

Clustering(15) Variable = 8P GAIN MUTATION ANALYSIS
D15V1, survival
                   sevent
clus2                 0   1
  8P GAIN MUTATED    65  36
  8P GAIN WILD-TYPE 179 103
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
              101               282 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               36               103 
$`8P GAIN MUTATED`
TCGA-18-3407 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 TCGA-18-3414 TCGA-18-3416 
        4.47        79.46         4.80        46.52        13.02        28.34 
TCGA-18-3421 TCGA-21-1070 TCGA-21-1075 TCGA-21-1082 TCGA-21-5783 TCGA-21-5784 
       43.76       119.54        70.16       119.80        88.11        41.69 
TCGA-22-1011 TCGA-22-4596 TCGA-22-5472 TCGA-22-5473 TCGA-22-5479 TCGA-22-5482 
        1.74         0.56        64.93        63.55        54.28        11.74 
TCGA-22-5489 TCGA-22-A5C4 TCGA-33-4532 TCGA-33-4533 TCGA-33-4583 TCGA-33-4587 
       62.86         0.95         7.63       114.05       141.34        54.44 
TCGA-33-6737 TCGA-34-2605 TCGA-34-5231 TCGA-34-5232 TCGA-34-5239 TCGA-34-7107 
       19.76        28.96        50.24        67.79        23.24         1.12 
TCGA-37-4132 TCGA-37-5819 TCGA-39-5019 TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 
        7.46         3.39        44.75        55.20        70.03         1.71 
TCGA-39-5029 TCGA-39-5034 TCGA-39-5040 TCGA-43-2578 TCGA-43-3920 TCGA-43-5670 
       24.33        36.39        17.06        22.49        33.11        18.05 
TCGA-43-6647 TCGA-43-A56V TCGA-52-7811 TCGA-56-7730 TCGA-56-A49D TCGA-56-A4ZK 
       24.89        12.03         8.75         0.20         1.25         0.13 
TCGA-56-A5DR TCGA-60-2695 TCGA-60-2708 TCGA-60-2712 TCGA-60-2714 TCGA-60-2719 
        0.13        21.11        80.45         9.01        50.33        42.64 
TCGA-60-2720 TCGA-60-2722 TCGA-60-2725 TCGA-66-2742 TCGA-66-2744 TCGA-66-2756 
        3.19        29.85        26.83        21.07         0.99         0.99 
TCGA-66-2763 TCGA-66-2767 TCGA-66-2769 TCGA-66-2770 TCGA-66-2773 TCGA-66-2777 
        0.99         2.01         7.07        23.01         3.02         2.01 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2793 TCGA-66-2800 TCGA-68-7756 TCGA-68-8251 
       22.98         4.04        10.06        49.05         6.64         3.16 
TCGA-77-7139 TCGA-77-7141 TCGA-77-7335 TCGA-77-7463 TCGA-77-8007 TCGA-77-8136 
       89.98         0.49        70.13        46.78         6.51        39.09 
TCGA-77-8138 TCGA-77-8140 TCGA-77-8143 TCGA-77-8150 TCGA-77-A5GH TCGA-85-6560 
       17.72        11.54        26.40        54.41        23.44         0.36 
TCGA-85-7699 TCGA-85-8052 TCGA-85-8287 TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 
        0.03         0.53         1.45         0.69        14.63        13.94 
TCGA-85-8664 TCGA-85-A513 TCGA-90-7769 TCGA-90-A4EE TCGA-92-7340 TCGA-94-7943 
        0.10         0.79        11.77        10.88         2.70        11.70 
TCGA-96-7545 TCGA-96-8169 TCGA-98-8023 TCGA-L3-A4E7 TCGA-L3-A524 
       44.19         6.21        10.13         1.15        14.76 

$`8P GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3408 TCGA-18-3412 TCGA-18-3415 TCGA-18-3417 TCGA-18-3419 
       12.16        81.01        11.34        59.51        24.92         1.64 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1071 
        6.15         2.79        90.54         3.02        27.19        46.88 
TCGA-21-1072 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 
       99.16        60.89        34.78        15.58        31.73       122.43 
TCGA-21-1081 TCGA-21-1083 TCGA-21-5782 TCGA-21-5786 TCGA-21-5787 TCGA-21-A5DI 
        9.34         8.78        31.63        33.93        10.82        32.19 
TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1012 
       19.99         7.33        14.93         4.31        64.21        14.10 
TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 
       27.02        48.82        20.48        35.08        48.33        24.13 
TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 
       38.17        34.75        13.12        32.02        19.30         9.57 
TCGA-22-4613 TCGA-22-5471 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 
       11.77        31.73        14.63        44.25         0.79        71.34 
TCGA-22-5481 TCGA-22-5483 TCGA-22-5485 TCGA-22-5491 TCGA-22-5492 TCGA-33-4538 
       79.20        18.84        30.12        56.32        16.64        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4586 TCGA-33-4589 TCGA-33-6738 
       43.10       173.82       103.53        14.07        10.82        27.02 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2608 TCGA-34-2609 TCGA-34-5234 
        2.63        61.61        31.50        32.88        31.27        56.38 
TCGA-34-5236 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
        9.07        12.00        14.07        30.94        18.15         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4133 
        3.95         0.43         0.39         6.58         8.12         7.82 
TCGA-37-4135 TCGA-37-4141 TCGA-39-5011 TCGA-39-5016 TCGA-39-5021 TCGA-39-5027 
        6.81         0.39        47.80        74.07        68.58        60.79 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
        1.94        27.39        15.58        35.64        35.70        17.88 
TCGA-43-2576 TCGA-43-2581 TCGA-43-3394 TCGA-43-5668 TCGA-43-6143 TCGA-43-6770 
       40.21        38.66        27.02        11.47        12.36        10.19 
TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 
        5.46         3.81         6.97         7.76        66.51        13.38 
TCGA-43-8116 TCGA-43-8118 TCGA-43-A474 TCGA-43-A475 TCGA-43-A56U TCGA-46-3768 
       11.77         2.93        11.61         9.73        14.20         9.99 
TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 
       10.65        13.91         0.39         0.39        29.95        17.79 
TCGA-52-7809 TCGA-52-7810 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-5898 
        5.46        30.35        27.45        28.96         0.10        18.25 
TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 
        2.04         0.62         0.99         0.43         0.99         1.45 
TCGA-56-7580 TCGA-56-7582 TCGA-56-7822 TCGA-56-8503 TCGA-56-8504 TCGA-56-8622 
        1.32         0.85         0.03         1.35         5.85         1.81 
TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 TCGA-56-A4BW 
        1.18         2.07         0.56         0.53         1.12         0.07 
TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A5DS TCGA-58-8386 TCGA-58-8387 
        1.51         0.99         0.82         0.26         0.03        13.25 
TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 TCGA-58-8393 TCGA-58-A46J 
       12.43        29.95        71.24        16.47        34.78        64.87 
TCGA-58-A46K TCGA-58-A46L TCGA-58-A46M TCGA-58-A46N TCGA-60-2696 TCGA-60-2697 
       34.36        36.59        23.24        17.75         3.58        12.23 
TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2709 
       10.22        96.82        37.94        92.71        21.73        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2713 TCGA-60-2715 TCGA-60-2716 TCGA-60-2721 
       66.54        41.42        56.91        35.34        48.49        32.32 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 
       35.90        23.57        11.77        16.96        43.10         2.01 
TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 
        1.02         2.01         0.92         0.99        21.01        25.05 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2768 TCGA-66-2771 TCGA-66-2778 TCGA-66-2780 
        2.01         1.02         2.01        19.00        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 
        3.98        12.00        24.95         1.97        25.97        40.01 
TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2794 TCGA-66-2795 TCGA-68-7755 
       22.98         5.03        30.02        54.08         4.01         2.73 
TCGA-68-7757 TCGA-68-8250 TCGA-68-A59I TCGA-68-A59J TCGA-77-6842 TCGA-77-6843 
        6.94         8.02         3.98         3.42        29.56        73.12 
TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7140 TCGA-77-7142 TCGA-77-7337 
       75.09        23.28        11.18        20.78        42.28       106.95 
TCGA-77-7338 TCGA-77-7465 TCGA-77-8008 TCGA-77-8009 TCGA-77-8128 TCGA-77-8130 
        0.16        15.75        86.76        53.95        37.81        82.92 
TCGA-77-8131 TCGA-77-8133 TCGA-77-8139 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 
       12.59        53.92       104.09        27.39         6.97         9.63 
TCGA-77-8153 TCGA-77-8154 TCGA-77-8156 TCGA-77-A5FZ TCGA-77-A5G3 TCGA-77-A5GB 
       55.36        35.90         0.33       126.18       117.57        30.81 
TCGA-85-6175 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 
        9.67        12.99         1.12         0.59         0.33         1.61 
TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 TCGA-85-8070 
        1.15         1.25         1.97         0.85         1.97        16.77 
TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 TCGA-85-8288 TCGA-85-8350 
       14.07        16.87         0.43         0.36         1.78         1.97 
TCGA-85-8351 TCGA-85-8352 TCGA-85-8353 TCGA-85-8354 TCGA-85-8355 TCGA-85-8479 
        1.81         2.20         1.78         2.01         2.01         0.72 
TCGA-85-8666 TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A50M TCGA-85-A53L TCGA-90-6837 
       15.62         0.49         0.82         0.62         0.43        24.92 
TCGA-90-7766 TCGA-90-7767 TCGA-90-7964 TCGA-90-A4ED TCGA-92-7341 TCGA-92-8063 
        9.50         2.93        14.07         8.02         3.48         4.01 
TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-96-7544 TCGA-96-8170 
        5.26         2.30         2.86         0.16        39.88         6.94 
TCGA-96-A4JK TCGA-96-A4JL TCGA-98-7454 TCGA-98-8020 TCGA-98-8021 TCGA-98-8022 
        8.98         6.02         8.42         2.76        13.58         7.36 
TCGA-J1-A4AH TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HG TCGA-NC-A5HI 
        7.30         1.18         2.73        56.61        50.89        37.32 

  8P GAIN MUTATED 8P GAIN WILD-TYPE 
             0.03              0.03 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
           141.34            173.82 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
           14.760            13.055 
[1] "0.0 - 141.3 (14.8)" "0.0 - 173.8 (13.1)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "8P GAIN MUTATED"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
  "8P GAIN MUTATED"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "8P GAIN MUTATED"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
  "8P GAIN MUTATED"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "8P GAIN MUTATED"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
  "8P GAIN MUTATED"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D15V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  8P GAIN MUTATED         0       12       36        1         9        18
  8P GAIN WILD-TYPE       1       57      100        0        41        52
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  8P GAIN MUTATED           17          9        3
  8P GAIN WILD-TYPE         37         11        2
D15V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  8P GAIN MUTATED    20  66   9  11
  8P GAIN WILD-TYPE  75 184  36   8
D15V4, multiclass
    clus
vv   8P GAIN MUTATED 8P GAIN WILD-TYPE
  T1              20                75
  T2              66               184
  T3               9                36
  T4              11                 8
                   vv
clus                 N0  N1  N2  N3
  8P GAIN MUTATED    64  28  10   2
  8P GAIN WILD-TYPE 191  81  24   3
D15V5, multiclass
    clus
vv   8P GAIN MUTATED 8P GAIN WILD-TYPE
  N0              64               191
  N1              28                81
  N2              10                24
  N3               2                 3
                   vv
clus                 M0  M1  MX
  8P GAIN MUTATED    92   3  11
  8P GAIN WILD-TYPE 257   2  38
D15V6, multiclass
    clus
vv   8P GAIN MUTATED 8P GAIN WILD-TYPE
  M0              92               257
  M1               3                 2
  MX              11                38
D15V7, binary
                   cls
clus                  0   1
  8P GAIN MUTATED    30  76
  8P GAIN WILD-TYPE  74 229
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P GAIN MUTATED     30   76
  8P GAIN WILD-TYPE   74  229
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  FEMALE              30                74
  MALE                76               229
D15V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  8P GAIN MUTATED                                       2
  8P GAIN WILD-TYPE                                    10
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  8P GAIN MUTATED                                        1
  8P GAIN WILD-TYPE                                      5
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  8P GAIN MUTATED                                         1
  8P GAIN WILD-TYPE                                       0
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  8P GAIN MUTATED                                                           102
  8P GAIN WILD-TYPE                                                         288
D15V9, multiclass
                                                             clus
vv                                                            8P GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     2
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             102
                                                             clus
vv                                                            8P GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      10
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               288
D15V10, binary
                   cls
clus                  0   1
  8P GAIN MUTATED     4 102
  8P GAIN WILD-TYPE   9 294
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P GAIN MUTATED      4  102
  8P GAIN WILD-TYPE    9  294
     clus
vv    8P GAIN MUTATED 8P GAIN WILD-TYPE
  NO                4                 9
  YES             102               294
D15V11, continuous
D15V12, continuous
                   vv
clus                 R0  R1  R2  RX
  8P GAIN MUTATED    88   3   0   1
  8P GAIN WILD-TYPE 244   5   4  17
D15V13, multiclass
    clus
vv   8P GAIN MUTATED 8P GAIN WILD-TYPE
  R0              88               244
  R1               3                 5
  R2               0                 4
  RX               1                17

Clustering(16) Variable = 8Q GAIN MUTATION ANALYSIS
D16V1, survival
                   sevent
clus2                 0   1
  8Q GAIN MUTATED   119  77
  8Q GAIN WILD-TYPE 125  62
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
              196               187 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
               77                62 
$`8Q GAIN MUTATED`
TCGA-18-3407 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 TCGA-18-3414 
        4.47        79.46         4.80        46.52        11.34        13.02 
TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 TCGA-18-5595 
       28.34        24.92         1.64        43.76         6.15        27.19 
TCGA-21-1070 TCGA-21-1075 TCGA-21-1079 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 
      119.54        70.16        31.73         9.34       119.80         8.78 
TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-21-A5DI TCGA-22-1011 
       88.11        41.69        33.93        10.82        32.19         1.74 
TCGA-22-1016 TCGA-22-1017 TCGA-22-4596 TCGA-22-4605 TCGA-22-4609 TCGA-22-4613 
       27.02        48.82         0.56        32.02         9.57        11.77 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 
       64.93        63.55        14.63        44.25         0.79        54.28 
TCGA-22-5481 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-A5C4 TCGA-33-4532 
       79.20        11.74        30.12        62.86         0.95         7.63 
TCGA-33-4533 TCGA-33-4583 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 TCGA-34-2605 
      114.05       141.34        54.44        10.82        19.76        28.96 
TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5239 TCGA-34-5241 TCGA-34-5928 
       31.27        50.24        67.79        23.24        14.07        18.15 
TCGA-37-3789 TCGA-37-4132 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5022 
        0.43         7.46         3.39        74.07        44.75        55.20 
TCGA-39-5024 TCGA-39-5028 TCGA-39-5029 TCGA-39-5034 TCGA-39-5035 TCGA-39-5040 
       70.03         1.71        24.33        36.39        15.58        17.06 
TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 
       40.21        22.49        38.66        33.11        11.47        18.05 
TCGA-43-6647 TCGA-43-6770 TCGA-43-7657 TCGA-43-8118 TCGA-43-A475 TCGA-43-A56V 
       24.89        10.19         7.76         2.93         9.73        12.03 
TCGA-46-3768 TCGA-52-7810 TCGA-52-7811 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        9.99        30.35         8.75        28.96         0.10         2.04 
TCGA-56-6546 TCGA-56-7822 TCGA-56-8504 TCGA-56-8622 TCGA-56-8628 TCGA-56-A49D 
        0.62         0.03         5.85         1.81         0.53         1.25 
TCGA-56-A4BX TCGA-56-A4ZK TCGA-56-A5DR TCGA-56-A5DS TCGA-58-8386 TCGA-58-8387 
        1.51         0.13         0.13         0.26         0.03        13.25 
TCGA-58-8392 TCGA-58-8393 TCGA-58-A46J TCGA-58-A46M TCGA-60-2695 TCGA-60-2698 
       16.47        34.78        64.87        23.24        21.11        10.22 
TCGA-60-2703 TCGA-60-2704 TCGA-60-2707 TCGA-60-2708 TCGA-60-2712 TCGA-60-2713 
       96.82        37.94        21.73        80.45         9.01        56.91 
TCGA-60-2714 TCGA-60-2719 TCGA-60-2720 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 
       50.33        42.64         3.19        29.85        35.90        23.57 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 
       26.83        11.77        43.10        21.07         0.99         1.02 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2763 TCGA-66-2767 TCGA-66-2769 
        0.92         0.99         0.99         0.99         2.01         7.07 
TCGA-66-2770 TCGA-66-2773 TCGA-66-2777 TCGA-66-2782 TCGA-66-2788 TCGA-66-2789 
       23.01         3.02         2.01        12.00        22.98         4.04 
TCGA-66-2790 TCGA-66-2792 TCGA-66-2793 TCGA-66-2800 TCGA-68-7756 TCGA-68-8251 
       22.98        30.02        10.06        49.05         6.64         3.16 
TCGA-68-A59I TCGA-77-6844 TCGA-77-7139 TCGA-77-7141 TCGA-77-7335 TCGA-77-7337 
        3.98        75.09        89.98         0.49        70.13       106.95 
TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 TCGA-77-8009 TCGA-77-8128 
        0.16        46.78        15.75         6.51        53.95        37.81 
TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 
       82.92        12.59        53.92        39.09        17.72       104.09 
TCGA-77-8140 TCGA-77-8143 TCGA-77-8148 TCGA-77-8150 TCGA-77-A5GH TCGA-85-6175 
       11.54        26.40         9.63        54.41        23.44         9.67 
TCGA-85-6560 TCGA-85-6798 TCGA-85-7699 TCGA-85-7950 TCGA-85-8052 TCGA-85-8070 
        0.36         1.12         0.03         1.97         0.53        16.77 
TCGA-85-8287 TCGA-85-8350 TCGA-85-8353 TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 
        1.45         1.97         1.78         0.69        14.63        13.94 
TCGA-85-8664 TCGA-85-8666 TCGA-85-A4QR TCGA-85-A513 TCGA-90-7767 TCGA-90-7769 
        0.10        15.62         0.82         0.79         2.93        11.77 
TCGA-90-A4EE TCGA-92-7340 TCGA-92-7341 TCGA-94-7557 TCGA-94-7943 TCGA-96-7545 
       10.88         2.70         3.48         0.16        11.70        44.19 
TCGA-96-8169 TCGA-96-8170 TCGA-96-A4JK TCGA-98-8020 TCGA-98-8022 TCGA-98-8023 
        6.21         6.94         8.98         2.76         7.36        10.13 
TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-L3-A524 TCGA-NC-A5HG 
        7.30         1.15        14.76        50.89 

$`8Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3408 TCGA-18-3415 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 
       12.16        81.01        59.51         2.79        90.54         3.02 
TCGA-21-1071 TCGA-21-1072 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1080 
       46.88        99.16        60.89        34.78        15.58       122.43 
TCGA-21-5782 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 
       31.63        19.99         7.33        14.93         4.31        64.21 
TCGA-22-1012 TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 TCGA-22-4599 
       14.10        20.48        35.08        48.33        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-5471 TCGA-22-5480 TCGA-22-5483 
       34.75        13.12        19.30        31.73        71.34        18.84 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 
       56.32        16.64        97.94        43.10       173.82       103.53 
TCGA-33-4586 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2608 
       14.07        27.02         2.63        61.61        31.50        32.88 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5240 TCGA-34-5927 TCGA-34-5929 TCGA-34-7107 
       56.38         9.07        12.00        30.94         4.96         1.12 
TCGA-37-3783 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4133 TCGA-37-4135 
        3.95         0.39         6.58         8.12         7.82         6.81 
TCGA-37-4141 TCGA-39-5011 TCGA-39-5021 TCGA-39-5027 TCGA-39-5030 TCGA-39-5031 
        0.39        47.80        68.58        60.79         1.94        27.39 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-3394 TCGA-43-6143 TCGA-43-6771 
       35.64        35.70        17.88        27.02        12.36         5.46 
TCGA-43-6773 TCGA-43-7656 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-43-A474 
        3.81         6.97        66.51        13.38        11.77        11.61 
TCGA-43-A56U TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 
       14.20        10.65        13.91         0.39         0.39        29.95 
TCGA-52-7622 TCGA-52-7809 TCGA-52-7812 TCGA-56-5898 TCGA-56-7221 TCGA-56-7222 
       17.79         5.46        27.45        18.25         0.99         0.43 
TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 TCGA-56-8503 
        0.99         1.45         1.32         0.85         0.20         1.35 
TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 TCGA-56-8629 TCGA-56-A4BW TCGA-56-A4BY 
        1.18         2.07         0.56         1.12         0.07         0.99 
TCGA-56-A4ZJ TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 TCGA-58-A46K TCGA-58-A46L 
        0.82        12.43        29.95        71.24        34.36        36.59 
TCGA-58-A46N TCGA-60-2696 TCGA-60-2697 TCGA-60-2706 TCGA-60-2709 TCGA-60-2710 
       17.75         3.58        12.23        92.71        49.48        66.54 
TCGA-60-2711 TCGA-60-2715 TCGA-60-2716 TCGA-60-2721 TCGA-66-2727 TCGA-66-2737 
       41.42        35.34        48.49        32.32        16.96         2.01 
TCGA-66-2754 TCGA-66-2758 TCGA-66-2759 TCGA-66-2765 TCGA-66-2766 TCGA-66-2768 
        2.01        21.01        25.05         2.01         1.02         2.01 
TCGA-66-2771 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2783 TCGA-66-2785 
       19.00        19.00        12.03         3.98        24.95         1.97 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2791 TCGA-66-2794 TCGA-66-2795 TCGA-68-7755 
       25.97        40.01         5.03        54.08         4.01         2.73 
TCGA-68-7757 TCGA-68-8250 TCGA-68-A59J TCGA-77-6842 TCGA-77-6843 TCGA-77-6845 
        6.94         8.02         3.42        29.56        73.12        23.28 
TCGA-77-7138 TCGA-77-7140 TCGA-77-7142 TCGA-77-8008 TCGA-77-8144 TCGA-77-8145 
       11.18        20.78        42.28        86.76        27.39         6.97 
TCGA-77-8153 TCGA-77-8154 TCGA-77-8156 TCGA-77-A5FZ TCGA-77-A5G3 TCGA-77-A5GB 
       55.36        35.90         0.33       126.18       117.57        30.81 
TCGA-85-6561 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7843 TCGA-85-7844 
       12.99         0.59         0.33         1.61         1.15         1.25 
TCGA-85-8048 TCGA-85-8049 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 
        0.85         1.97        14.07        16.87         0.43         0.36 
TCGA-85-8288 TCGA-85-8351 TCGA-85-8352 TCGA-85-8354 TCGA-85-8355 TCGA-85-8479 
        1.78         1.81         2.20         2.01         2.01         0.72 
TCGA-85-A4CL TCGA-85-A50M TCGA-85-A53L TCGA-90-6837 TCGA-90-7766 TCGA-90-7964 
        0.49         0.62         0.43        24.92         9.50        14.07 
TCGA-90-A4ED TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-96-7544 
        8.02         4.01         5.26         2.30         2.86        39.88 
TCGA-96-A4JL TCGA-98-7454 TCGA-98-8021 TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE 
        6.02         8.42        13.58         1.18         2.73        56.61 
TCGA-NC-A5HI 
       37.32 

  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
             0.03              0.07 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
           141.34            173.82 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
           13.595            13.380 
[1] "0.0 - 141.3 (13.6)" "0.1 - 173.8 (13.4)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D16V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  8Q GAIN MUTATED         1       26       69        0        21        44
  8Q GAIN WILD-TYPE       0       43       67        1        29        26
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  8Q GAIN MUTATED           31         10        5
  8Q GAIN WILD-TYPE         23         10        0
D16V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  8Q GAIN MUTATED    38 133  26  11
  8Q GAIN WILD-TYPE  57 117  19   8
D16V4, multiclass
    clus
vv   8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  T1              38                57
  T2             133               117
  T3              26                19
  T4              11                 8
                   vv
clus                 N0  N1  N2  N3
  8Q GAIN MUTATED   121  66  15   2
  8Q GAIN WILD-TYPE 134  43  19   3
D16V5, multiclass
    clus
vv   8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  N0             121               134
  N1              66                43
  N2              15                19
  N3               2                 3
                   vv
clus                 M0  M1  MX
  8Q GAIN MUTATED   180   5  22
  8Q GAIN WILD-TYPE 169   0  27
D16V6, multiclass
    clus
vv   8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  M0             180               169
  M1               5                 0
  MX              22                27
D16V7, binary
                   cls
clus                  0   1
  8Q GAIN MUTATED    55 153
  8Q GAIN WILD-TYPE  49 152
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q GAIN MUTATED     55  153
  8Q GAIN WILD-TYPE   49  152
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  FEMALE              55                49
  MALE               153               152
D16V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  8Q GAIN MUTATED                                       4
  8Q GAIN WILD-TYPE                                     8
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  8Q GAIN MUTATED                                        2
  8Q GAIN WILD-TYPE                                      4
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  8Q GAIN MUTATED                                         1
  8Q GAIN WILD-TYPE                                       0
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  8Q GAIN MUTATED                                                           201
  8Q GAIN WILD-TYPE                                                         189
D16V9, multiclass
                                                             clus
vv                                                            8Q GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     4
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    2
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             201
                                                             clus
vv                                                            8Q GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       8
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      4
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               189
D16V10, binary
                   cls
clus                  0   1
  8Q GAIN MUTATED     8 200
  8Q GAIN WILD-TYPE   5 196
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q GAIN MUTATED      8  200
  8Q GAIN WILD-TYPE    5  196
     clus
vv    8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  NO                8                 5
  YES             200               196
D16V11, continuous
D16V12, continuous
                   vv
clus                 R0  R1  R2  RX
  8Q GAIN MUTATED   173   5   0   6
  8Q GAIN WILD-TYPE 159   3   4  12
D16V13, multiclass
    clus
vv   8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  R0             173               159
  R1               5                 3
  R2               0                 4
  RX               6                12

Clustering(17) Variable = 9P GAIN MUTATION ANALYSIS
D17V1, survival
                   sevent
clus2                 0   1
  9P GAIN MUTATED    27  18
  9P GAIN WILD-TYPE 217 121
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               45               338 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               18               121 
$`9P GAIN MUTATED`
TCGA-18-3407 TCGA-18-3410 TCGA-18-3416 TCGA-22-4604 TCGA-22-5481 TCGA-33-4532 
        4.47         4.80        28.34        13.12        79.20         7.63 
TCGA-33-4533 TCGA-33-4566 TCGA-33-4583 TCGA-33-4586 TCGA-33-4589 TCGA-34-5239 
      114.05       173.82       141.34        14.07        10.82        23.24 
TCGA-34-5240 TCGA-34-7107 TCGA-37-3792 TCGA-37-4133 TCGA-39-5030 TCGA-39-5036 
       12.00         1.12         0.39         7.82         1.94        35.64 
TCGA-43-6143 TCGA-43-7658 TCGA-43-A475 TCGA-46-6025 TCGA-51-4079 TCGA-52-7622 
       12.36        66.51         9.73        10.65         0.39        17.79 
TCGA-58-8386 TCGA-60-2695 TCGA-60-2704 TCGA-60-2712 TCGA-60-2714 TCGA-60-2722 
        0.03        21.11        37.94         9.01        50.33        29.85 
TCGA-66-2756 TCGA-68-7755 TCGA-68-8250 TCGA-77-8007 TCGA-77-8133 TCGA-77-8136 
        0.99         2.73         8.02         6.51        53.92        39.09 
TCGA-77-8150 TCGA-77-A5G3 TCGA-85-6561 TCGA-85-7698 TCGA-85-8070 TCGA-85-8072 
       54.41       117.57        12.99         1.61        16.77        16.87 
TCGA-85-8277 TCGA-85-8353 TCGA-92-8064 
        0.36         1.78         5.26 

$`9P GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3408 TCGA-18-3409 TCGA-18-3411 TCGA-18-3412 TCGA-18-3414 
       12.16        81.01        79.46        46.52        11.34        13.02 
TCGA-18-3415 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 
       59.51        24.92         1.64        43.76         6.15         2.79 
TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 
       90.54         3.02        27.19       119.54        46.88        99.16 
TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 
       70.16        60.89        34.78        15.58        31.73       122.43 
TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 
        9.34       119.80         8.78        31.63        88.11        41.69 
TCGA-21-5786 TCGA-21-5787 TCGA-21-A5DI TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 
       33.93        10.82        32.19        19.99         7.33        14.93 
TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 
        4.31        64.21         1.74        14.10        27.02        48.82 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 
       20.48        35.08        48.33        24.13         0.56        38.17 
TCGA-22-4601 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 
       34.75        32.02        19.30         9.57        11.77        31.73 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 
       64.93        63.55        14.63        44.25         0.79        54.28 
TCGA-22-5480 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 
       71.34        11.74        18.84        30.12        62.86        56.32 
TCGA-22-5492 TCGA-22-A5C4 TCGA-33-4538 TCGA-33-4547 TCGA-33-4582 TCGA-33-4587 
       16.64         0.95        97.94        43.10       103.53        54.44 
TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 
       19.76        27.02         2.63        61.61        31.50        28.96 
TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       32.88        31.27        50.24        67.79        56.38         9.07 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 
       14.07        30.94        18.15         4.96         3.95         0.43 
TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        6.58         8.12         7.46         6.81         0.39         3.39 
TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
       47.80        74.07        44.75        68.58        55.20        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 
       60.79         1.71        24.33        27.39        36.39        15.58 
TCGA-39-5037 TCGA-39-5039 TCGA-39-5040 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 
       35.70        17.88        17.06        40.21        22.49        38.66 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6647 TCGA-43-6770 
       27.02        33.11        11.47        18.05        24.89        10.19 
TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-8115 TCGA-43-8116 
        5.46         3.81         6.97         7.76        13.38        11.77 
TCGA-43-8118 TCGA-43-A474 TCGA-43-A56U TCGA-43-A56V TCGA-46-3768 TCGA-46-6026 
        2.93        11.61        14.20        12.03         9.99        13.91 
TCGA-51-4080 TCGA-51-4081 TCGA-52-7809 TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 
        0.39        29.95         5.46        30.35         8.75        27.45 
TCGA-56-1622 TCGA-56-5897 TCGA-56-5898 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 
       28.96         0.10        18.25         2.04         0.62         0.99 
TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 
        0.43         0.99         1.45         1.32         0.85         0.20 
TCGA-56-7822 TCGA-56-8503 TCGA-56-8504 TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 
        0.03         1.35         5.85         1.81         1.18         2.07 
TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 TCGA-56-A49D TCGA-56-A4BW TCGA-56-A4BX 
        0.56         0.53         1.12         1.25         0.07         1.51 
TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DR TCGA-56-A5DS TCGA-58-8387 
        0.99         0.82         0.13         0.13         0.26        13.25 
TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 TCGA-58-8393 TCGA-58-A46J 
       12.43        29.95        71.24        16.47        34.78        64.87 
TCGA-58-A46K TCGA-58-A46L TCGA-58-A46M TCGA-58-A46N TCGA-60-2696 TCGA-60-2697 
       34.36        36.59        23.24        17.75         3.58        12.23 
TCGA-60-2698 TCGA-60-2703 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
       10.22        96.82        92.71        21.73        80.45        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2713 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 
       66.54        41.42        56.91        35.34        48.49        42.64 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 
        3.19        32.32        35.90        23.57        26.83        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 
       16.96        43.10         2.01        21.07         0.99         1.02 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        2.01         0.92         0.99        21.01        25.05         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 
        2.01         1.02         2.01         2.01         7.07        23.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       19.00         3.02         2.01        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
       12.00        24.95         1.97        25.97        40.01        22.98 
TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
        4.04        22.98         5.03        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-68-7756 TCGA-68-7757 TCGA-68-8251 TCGA-68-A59I 
        4.01        49.05         6.64         6.94         3.16         3.98 
TCGA-68-A59J TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 
        3.42        29.56        73.12        75.09        23.28        11.18 
TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 
       89.98        20.78         0.49        42.28        70.13       106.95 
TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8008 TCGA-77-8009 TCGA-77-8128 
        0.16        46.78        15.75        86.76        53.95        37.81 
TCGA-77-8130 TCGA-77-8131 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 
       82.92        12.59        17.72       104.09        11.54        26.40 
TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8153 TCGA-77-8154 TCGA-77-8156 
       27.39         6.97         9.63        55.36        35.90         0.33 
TCGA-77-A5FZ TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6175 TCGA-85-6560 TCGA-85-6798 
      126.18        30.81        23.44         9.67         0.36         1.12 
TCGA-85-7696 TCGA-85-7697 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 
        0.59         0.33         0.03         1.15         1.25         1.97 
TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8071 TCGA-85-8276 TCGA-85-8287 
        0.85         1.97         0.53        14.07         0.43         1.45 
TCGA-85-8288 TCGA-85-8350 TCGA-85-8351 TCGA-85-8352 TCGA-85-8354 TCGA-85-8355 
        1.78         1.97         1.81         2.20         2.01         2.01 
TCGA-85-8479 TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 TCGA-85-8666 
        0.72         0.69        14.63        13.94         0.10        15.62 
TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A50M TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 
        0.49         0.82         0.62         0.79         0.43        24.92 
TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 TCGA-90-7964 TCGA-90-A4ED TCGA-90-A4EE 
        9.50         2.93        11.77        14.07         8.02        10.88 
TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 
        2.70         3.48         4.01         2.30         2.86         0.16 
TCGA-94-7943 TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 TCGA-96-A4JK 
       11.70        39.88        44.19         6.21         6.94         8.98 
TCGA-96-A4JL TCGA-98-7454 TCGA-98-8020 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
        6.02         8.42         2.76        13.58         7.36        10.13 
TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-L3-A524 TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE 
        7.30         1.15        14.76         1.18         2.73        56.61 
TCGA-NC-A5HG TCGA-NC-A5HI 
       50.89        37.32 

  9P GAIN MUTATED 9P GAIN WILD-TYPE 
             0.03              0.03 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
           173.82            126.18 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
           12.360            13.925 
[1] "0.0 - 173.8 (12.4)" "0.0 - 126.2 (13.9)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D17V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  9P GAIN MUTATED         0        5       13        1         3        13
  9P GAIN WILD-TYPE       1       64      123        0        47        57
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  9P GAIN MUTATED            6          3        1
  9P GAIN WILD-TYPE         48         17        4
D17V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  9P GAIN MUTATED     8  28   6   3
  9P GAIN WILD-TYPE  87 222  39  16
D17V4, multiclass
    clus
vv   9P GAIN MUTATED 9P GAIN WILD-TYPE
  T1               8                87
  T2              28               222
  T3               6                39
  T4               3                16
                   vv
clus                 N0  N1  N2  N3
  9P GAIN MUTATED    23  18   2   0
  9P GAIN WILD-TYPE 232  91  32   5
D17V5, multiclass
    clus
vv   9P GAIN MUTATED 9P GAIN WILD-TYPE
  N0              23               232
  N1              18                91
  N2               2                32
  N3               0                 5
                   vv
clus                 M0  M1  MX
  9P GAIN MUTATED    41   1   2
  9P GAIN WILD-TYPE 308   4  47
D17V6, multiclass
    clus
vv   9P GAIN MUTATED 9P GAIN WILD-TYPE
  M0              41               308
  M1               1                 4
  MX               2                47
D17V7, binary
                   cls
clus                  0   1
  9P GAIN MUTATED    14  31
  9P GAIN WILD-TYPE  90 274
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P GAIN MUTATED     14   31
  9P GAIN WILD-TYPE   90  274
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  FEMALE              14                90
  MALE                31               274
D17V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  9P GAIN MUTATED                                       3
  9P GAIN WILD-TYPE                                     9
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  9P GAIN MUTATED                                        0
  9P GAIN WILD-TYPE                                      6
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  9P GAIN MUTATED                                         0
  9P GAIN WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  9P GAIN MUTATED                                                            42
  9P GAIN WILD-TYPE                                                         348
D17V9, multiclass
                                                             clus
vv                                                            9P GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     3
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    0
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              42
                                                             clus
vv                                                            9P GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       9
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      6
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               348
D17V10, binary
                   cls
clus                  0   1
  9P GAIN MUTATED     1  44
  9P GAIN WILD-TYPE  12 352
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P GAIN MUTATED      1   44
  9P GAIN WILD-TYPE   12  352
     clus
vv    9P GAIN MUTATED 9P GAIN WILD-TYPE
  NO                1                12
  YES              44               352
D17V11, continuous
D17V12, continuous
                   vv
clus                 R0  R1  R2  RX
  9P GAIN MUTATED    34   1   0   2
  9P GAIN WILD-TYPE 298   7   4  16
D17V13, multiclass
    clus
vv   9P GAIN MUTATED 9P GAIN WILD-TYPE
  R0              34               298
  R1               1                 7
  R2               0                 4
  RX               2                16

Clustering(18) Variable = 9Q GAIN MUTATION ANALYSIS
D18V1, survival
                   sevent
clus2                 0   1
  9Q GAIN MUTATED    46  28
  9Q GAIN WILD-TYPE 198 111
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               74               309 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               28               111 
$`9Q GAIN MUTATED`
TCGA-18-3407 TCGA-18-3410 TCGA-18-3412 TCGA-18-3416 TCGA-21-1072 TCGA-21-1076 
        4.47         4.80        11.34        28.34        99.16        60.89 
TCGA-22-0940 TCGA-22-0944 TCGA-22-4599 TCGA-22-4604 TCGA-22-4613 TCGA-22-5477 
       19.99         7.33        38.17        13.12        11.77        44.25 
TCGA-22-5483 TCGA-33-4533 TCGA-33-4566 TCGA-33-4583 TCGA-33-4586 TCGA-33-4589 
       18.84       114.05       173.82       141.34        14.07        10.82 
TCGA-34-2596 TCGA-34-2600 TCGA-34-5239 TCGA-34-7107 TCGA-37-3792 TCGA-37-4133 
        2.63        61.61        23.24         1.12         0.39         7.82 
TCGA-39-5030 TCGA-39-5036 TCGA-43-3394 TCGA-43-5668 TCGA-43-6143 TCGA-43-7658 
        1.94        35.64        27.02        11.47        12.36        66.51 
TCGA-43-A475 TCGA-46-3768 TCGA-46-6025 TCGA-51-4079 TCGA-52-7622 TCGA-52-7809 
        9.73         9.99        10.65         0.39        17.79         5.46 
TCGA-56-7582 TCGA-56-A4BX TCGA-58-8386 TCGA-58-8391 TCGA-58-A46M TCGA-60-2695 
        0.85         1.51         0.03        71.24        23.24        21.11 
TCGA-60-2704 TCGA-60-2710 TCGA-60-2711 TCGA-60-2722 TCGA-66-2744 TCGA-66-2756 
       37.94        66.54        41.42        29.85         0.99         0.99 
TCGA-66-2757 TCGA-66-2770 TCGA-66-2792 TCGA-68-7755 TCGA-77-7141 TCGA-77-7335 
        0.99        23.01        30.02         2.73         0.49        70.13 
TCGA-77-7465 TCGA-77-8009 TCGA-77-8133 TCGA-77-8136 TCGA-77-8144 TCGA-77-8150 
       15.75        53.95        53.92        39.09        27.39        54.41 
TCGA-77-8153 TCGA-77-A5G3 TCGA-85-7696 TCGA-85-7698 TCGA-85-7844 TCGA-85-8070 
       55.36       117.57         0.59         1.61         1.25        16.77 
TCGA-85-8072 TCGA-85-8277 TCGA-85-8353 TCGA-85-8580 TCGA-90-7769 TCGA-96-A4JK 
       16.87         0.36         1.78        14.63        11.77         8.98 
TCGA-96-A4JL TCGA-L3-A524 
        6.02        14.76 

$`9Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3408 TCGA-18-3409 TCGA-18-3411 TCGA-18-3414 TCGA-18-3415 
       12.16        81.01        79.46        46.52        13.02        59.51 
TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 
       24.92         1.64        43.76         6.15         2.79        90.54 
TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1075 TCGA-21-1077 
        3.02        27.19       119.54        46.88        70.16        34.78 
TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 
       15.58        31.73       122.43         9.34       119.80         8.78 
TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-21-A5DI 
       31.63        88.11        41.69        33.93        10.82        32.19 
TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 
       14.93         4.31        64.21         1.74        14.10        27.02 
TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 
       48.82        20.48        35.08        48.33        24.13         0.56 
TCGA-22-4601 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-5471 TCGA-22-5472 
       34.75        32.02        19.30         9.57        31.73        64.93 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 
       63.55        14.63         0.79        54.28        71.34        79.20 
TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-22-A5C4 
       11.74        30.12        62.86        56.32        16.64         0.95 
TCGA-33-4532 TCGA-33-4538 TCGA-33-4547 TCGA-33-4582 TCGA-33-4587 TCGA-33-6737 
        7.63        97.94        43.10       103.53        54.44        19.76 
TCGA-33-6738 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 
       27.02        31.50        28.96        32.88        31.27        50.24 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 
       67.79        56.38         9.07        12.00        14.07        30.94 
TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4129 TCGA-37-4130 
       18.15         4.96         3.95         0.43         6.58         8.12 
TCGA-37-4132 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 
        7.46         6.81         0.39         3.39        47.80        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.75        68.58        55.20        70.03        60.79         1.71 
TCGA-39-5029 TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5037 TCGA-39-5039 
       24.33        27.39        36.39        15.58        35.70        17.88 
TCGA-39-5040 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-3920 TCGA-43-5670 
       17.06        40.21        22.49        38.66        33.11        18.05 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 
       24.89        10.19         5.46         3.81         6.97         7.76 
TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 TCGA-43-A474 TCGA-43-A56U TCGA-43-A56V 
       13.38        11.77         2.93        11.61        14.20        12.03 
TCGA-46-6026 TCGA-51-4080 TCGA-51-4081 TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 
       13.91         0.39        29.95        30.35         8.75        27.45 
TCGA-56-1622 TCGA-56-5897 TCGA-56-5898 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 
       28.96         0.10        18.25         2.04         0.62         0.99 
TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7730 TCGA-56-7822 
        0.43         0.99         1.45         1.32         0.20         0.03 
TCGA-56-8503 TCGA-56-8504 TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 
        1.35         5.85         1.81         1.18         2.07         0.56 
TCGA-56-8628 TCGA-56-8629 TCGA-56-A49D TCGA-56-A4BW TCGA-56-A4BY TCGA-56-A4ZJ 
        0.53         1.12         1.25         0.07         0.99         0.82 
TCGA-56-A4ZK TCGA-56-A5DR TCGA-56-A5DS TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 
        0.13         0.13         0.26        13.25        12.43        29.95 
TCGA-58-8392 TCGA-58-8393 TCGA-58-A46J TCGA-58-A46K TCGA-58-A46L TCGA-58-A46N 
       16.47        34.78        64.87        34.36        36.59        17.75 
TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2706 TCGA-60-2707 
        3.58        12.23        10.22        96.82        92.71        21.73 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 
       80.45        49.48         9.01        56.91        50.33        35.34 
TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2723 TCGA-60-2724 
       48.49        42.64         3.19        32.32        35.90        23.57 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 
       26.83        11.77        16.96        43.10         2.01        21.07 
TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        1.02         2.01         0.92        21.01        25.05         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2771 
        2.01         1.02         2.01         2.01         7.07        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
        3.02         2.01        19.00        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       24.95         1.97        25.97        40.01        22.98         4.04 
TCGA-66-2790 TCGA-66-2791 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
       22.98         5.03        10.06        54.08         4.01        49.05 
TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 TCGA-68-A59I TCGA-68-A59J 
        6.64         6.94         8.02         3.16         3.98         3.42 
TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 
       29.56        73.12        75.09        23.28        11.18        89.98 
TCGA-77-7140 TCGA-77-7142 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-8007 
       20.78        42.28       106.95         0.16        46.78         6.51 
TCGA-77-8008 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8138 TCGA-77-8139 
       86.76        37.81        82.92        12.59        17.72       104.09 
TCGA-77-8140 TCGA-77-8143 TCGA-77-8145 TCGA-77-8148 TCGA-77-8154 TCGA-77-8156 
       11.54        26.40         6.97         9.63        35.90         0.33 
TCGA-77-A5FZ TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6175 TCGA-85-6560 TCGA-85-6561 
      126.18        30.81        23.44         9.67         0.36        12.99 
TCGA-85-6798 TCGA-85-7697 TCGA-85-7699 TCGA-85-7843 TCGA-85-7950 TCGA-85-8048 
        1.12         0.33         0.03         1.15         1.97         0.85 
TCGA-85-8049 TCGA-85-8052 TCGA-85-8071 TCGA-85-8276 TCGA-85-8287 TCGA-85-8288 
        1.97         0.53        14.07         0.43         1.45         1.78 
TCGA-85-8350 TCGA-85-8351 TCGA-85-8352 TCGA-85-8354 TCGA-85-8355 TCGA-85-8479 
        1.97         1.81         2.20         2.01         2.01         0.72 
TCGA-85-8481 TCGA-85-8582 TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL TCGA-85-A4QR 
        0.69        13.94         0.10        15.62         0.49         0.82 
TCGA-85-A50M TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 
        0.62         0.79         0.43        24.92         9.50         2.93 
TCGA-90-7964 TCGA-90-A4ED TCGA-90-A4EE TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 
       14.07         8.02        10.88         2.70         3.48         4.01 
TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 
        5.26         2.30         2.86         0.16        11.70        39.88 
TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 TCGA-98-7454 TCGA-98-8020 TCGA-98-8021 
       44.19         6.21         6.94         8.42         2.76        13.58 
TCGA-98-8022 TCGA-98-8023 TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-LA-A446 TCGA-MF-A522 
        7.36        10.13         7.30         1.15         1.18         2.73 
TCGA-NC-A5HE TCGA-NC-A5HG TCGA-NC-A5HI 
       56.61        50.89        37.32 

  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
             0.03              0.03 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
           173.82            126.18 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
           14.695            13.020 
[1] "0.0 - 173.8 (14.7)" "0.0 - 126.2 (13.0)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
  "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
  "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
  "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
  "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
  "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
  "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
  "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
  "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
  "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D18V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  9Q GAIN MUTATED         0        8       26        1        11        16
  9Q GAIN WILD-TYPE       1       61      110        0        39        54
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  9Q GAIN MUTATED            8          4        1
  9Q GAIN WILD-TYPE         46         16        4
D18V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  9Q GAIN MUTATED    16  47   8   4
  9Q GAIN WILD-TYPE  79 203  37  15
D18V4, multiclass
    clus
vv   9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  T1              16                79
  T2              47               203
  T3               8                37
  T4               4                15
                   vv
clus                 N0  N1  N2  N3
  9Q GAIN MUTATED    42  28   4   0
  9Q GAIN WILD-TYPE 213  81  30   5
D18V5, multiclass
    clus
vv   9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  N0              42               213
  N1              28                81
  N2               4                30
  N3               0                 5
                   vv
clus                 M0  M1  MX
  9Q GAIN MUTATED    71   1   2
  9Q GAIN WILD-TYPE 278   4  47
D18V6, multiclass
    clus
vv   9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  M0              71               278
  M1               1                 4
  MX               2                47
D18V7, binary
                   cls
clus                  0   1
  9Q GAIN MUTATED    24  51
  9Q GAIN WILD-TYPE  80 254
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q GAIN MUTATED     24   51
  9Q GAIN WILD-TYPE   80  254
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  FEMALE              24                80
  MALE                51               254
D18V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  9Q GAIN MUTATED                                       3
  9Q GAIN WILD-TYPE                                     9
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  9Q GAIN MUTATED                                        0
  9Q GAIN WILD-TYPE                                      6
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  9Q GAIN MUTATED                                         0
  9Q GAIN WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  9Q GAIN MUTATED                                                            72
  9Q GAIN WILD-TYPE                                                         318
D18V9, multiclass
                                                             clus
vv                                                            9Q GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     3
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    0
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              72
                                                             clus
vv                                                            9Q GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       9
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      6
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               318
D18V10, binary
                   cls
clus                  0   1
  9Q GAIN MUTATED     0  75
  9Q GAIN WILD-TYPE  13 321
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q GAIN MUTATED      0   75
  9Q GAIN WILD-TYPE   13  321
     clus
vv    9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  NO                0                13
  YES              75               321
D18V11, continuous
D18V12, continuous
                   vv
clus                 R0  R1  R2  RX
  9Q GAIN MUTATED    65   1   0   1
  9Q GAIN WILD-TYPE 267   7   4  17
D18V13, multiclass
    clus
vv   9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  R0              65               267
  R1               1                 7
  R2               0                 4
  RX               1                17

Clustering(19) Variable = 10P GAIN MUTATION ANALYSIS
D19V1, survival
                    sevent
clus2                  0   1
  10P GAIN MUTATED    34  22
  10P GAIN WILD-TYPE 210 117
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                56                327 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                22                117 
$`10P GAIN MUTATED`
TCGA-18-3407 TCGA-18-3416 TCGA-18-3417 TCGA-21-1070 TCGA-21-1083 TCGA-21-5783 
        4.47        28.34        24.92       119.54         8.78        88.11 
TCGA-21-5787 TCGA-22-0944 TCGA-22-1017 TCGA-22-5473 TCGA-33-4566 TCGA-33-6737 
       10.82         7.33        48.82        63.55       173.82        19.76 
TCGA-34-2609 TCGA-34-5928 TCGA-34-7107 TCGA-37-4133 TCGA-37-4141 TCGA-43-3394 
       31.27        18.15         1.12         7.82         0.39        27.02 
TCGA-43-5668 TCGA-43-5670 TCGA-46-6025 TCGA-52-7811 TCGA-56-7222 TCGA-56-A4BX 
       11.47        18.05        10.65         8.75         0.43         1.51 
TCGA-56-A5DR TCGA-58-A46L TCGA-60-2698 TCGA-60-2712 TCGA-60-2724 TCGA-60-2726 
        0.13        36.59        10.22         9.01        23.57        11.77 
TCGA-66-2756 TCGA-66-2763 TCGA-66-2778 TCGA-66-2782 TCGA-66-2792 TCGA-77-7140 
        0.99         0.99        19.00        12.00        30.02        20.78 
TCGA-77-7142 TCGA-77-7463 TCGA-77-8143 TCGA-77-8148 TCGA-77-8150 TCGA-85-6560 
       42.28        46.78        26.40         9.63        54.41         0.36 
TCGA-85-6561 TCGA-85-7843 TCGA-85-8350 TCGA-85-8352 TCGA-85-8582 TCGA-85-A50M 
       12.99         1.15         1.97         2.20        13.94         0.62 
TCGA-85-A53L TCGA-90-7767 TCGA-90-A4ED TCGA-94-7943 TCGA-96-7545 TCGA-98-8022 
        0.43         2.93         8.02        11.70        44.19         7.36 
TCGA-NC-A5HG TCGA-NC-A5HI 
       50.89        37.32 

$`10P GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16        81.01        79.46         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 
       13.02        59.51         1.64        43.76         6.15         2.79 
TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 
       90.54         3.02        27.19        46.88        99.16        70.16 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 
       60.89        34.78        15.58        31.73       122.43         9.34 
TCGA-21-1082 TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-A5DI TCGA-22-0940 
      119.80        31.63        41.69        33.93        32.19        19.99 
TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 
       14.93         4.31        64.21         1.74        14.10        27.02 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 
       20.48        35.08        48.33        24.13         0.56        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 
       34.75        13.12        32.02        19.30         9.57        11.77 
TCGA-22-5471 TCGA-22-5472 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 
       31.73        64.93        14.63        44.25         0.79        54.28 
TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 
       71.34        79.20        11.74        18.84        30.12        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-22-A5C4 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       56.32        16.64         0.95         7.63       114.05        97.94 
TCGA-33-4547 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 
       43.10       103.53       141.34        14.07        54.44        10.82 
TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 
       27.02         2.63        61.61        31.50        28.96        32.88 
TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 
       50.24        67.79        56.38         9.07        23.24        12.00 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 
       14.07        30.94         4.96         3.95         0.43         0.39 
TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4135 TCGA-37-5819 TCGA-39-5011 
        6.58         8.12         7.46         6.81         3.39        47.80 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.75        68.58        55.20        70.03        60.79 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 
        1.71        24.33         1.94        27.39        36.39        15.58 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-39-5040 TCGA-43-2576 TCGA-43-2578 
       35.64        35.70        17.88        17.06        40.21        22.49 
TCGA-43-2581 TCGA-43-3920 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 
       38.66        33.11        12.36        24.89        10.19         5.46 
TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 
        3.81         6.97         7.76        66.51        13.38        11.77 
TCGA-43-8118 TCGA-43-A474 TCGA-43-A475 TCGA-43-A56U TCGA-43-A56V TCGA-46-3768 
        2.93        11.61         9.73        14.20        12.03         9.99 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 
       13.91         0.39         0.39        29.95        17.79         5.46 
TCGA-52-7810 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-5898 TCGA-56-6545 
       30.35        27.45        28.96         0.10        18.25         2.04 
TCGA-56-6546 TCGA-56-7221 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 
        0.62         0.99         0.99         1.45         1.32         0.85 
TCGA-56-7730 TCGA-56-7822 TCGA-56-8503 TCGA-56-8504 TCGA-56-8622 TCGA-56-8624 
        0.20         0.03         1.35         5.85         1.81         1.18 
TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 TCGA-56-A49D TCGA-56-A4BW 
        2.07         0.56         0.53         1.12         1.25         0.07 
TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DS TCGA-58-8386 TCGA-58-8387 
        0.99         0.82         0.13         0.26         0.03        13.25 
TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 TCGA-58-8393 TCGA-58-A46J 
       12.43        29.95        71.24        16.47        34.78        64.87 
TCGA-58-A46K TCGA-58-A46M TCGA-58-A46N TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 
       34.36        23.24        17.75        21.11         3.58        12.23 
TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
       96.82        37.94        92.71        21.73        80.45        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 
       66.54        41.42        56.91        50.33        35.34        48.49 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2725 
       42.64         3.19        32.32        29.85        35.90        26.83 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 
       16.96        43.10         2.01        21.07         0.99         1.02 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2765 
        2.01         0.92         0.99        21.01        25.05         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 
        1.02         2.01         2.01         7.07        23.01        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2780 TCGA-66-2781 TCGA-66-2783 TCGA-66-2785 
        3.02         2.01        12.03         3.98        24.95         1.97 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 
       25.97        40.01        22.98         4.04        22.98         5.03 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 
       10.06        54.08         4.01        49.05         2.73         6.64 
TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 TCGA-68-A59I TCGA-68-A59J TCGA-77-6842 
        6.94         8.02         3.16         3.98         3.42        29.56 
TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7141 
       73.12        75.09        23.28        11.18        89.98         0.49 
TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7465 TCGA-77-8007 TCGA-77-8008 
       70.13       106.95         0.16        15.75         6.51        86.76 
TCGA-77-8009 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 
       53.95        37.81        82.92        12.59        53.92        39.09 
TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8144 TCGA-77-8145 TCGA-77-8153 
       17.72       104.09        11.54        27.39         6.97        55.36 
TCGA-77-8154 TCGA-77-8156 TCGA-77-A5FZ TCGA-77-A5G3 TCGA-77-A5GB TCGA-77-A5GH 
       35.90         0.33       126.18       117.57        30.81        23.44 
TCGA-85-6175 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 
        9.67         1.12         0.59         0.33         1.61         0.03 
TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 
        1.25         1.97         0.85         1.97         0.53        16.77 
TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 TCGA-85-8288 
       14.07        16.87         0.43         0.36         1.45         1.78 
TCGA-85-8351 TCGA-85-8353 TCGA-85-8354 TCGA-85-8355 TCGA-85-8479 TCGA-85-8481 
        1.81         1.78         2.01         2.01         0.72         0.69 
TCGA-85-8580 TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A513 
       14.63         0.10        15.62         0.49         0.82         0.79 
TCGA-90-6837 TCGA-90-7766 TCGA-90-7769 TCGA-90-7964 TCGA-90-A4EE TCGA-92-7340 
       24.92         9.50        11.77        14.07        10.88         2.70 
TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 
        3.48         4.01         5.26         2.30         2.86         0.16 
TCGA-96-7544 TCGA-96-8169 TCGA-96-8170 TCGA-96-A4JK TCGA-96-A4JL TCGA-98-7454 
       39.88         6.21         6.94         8.98         6.02         8.42 
TCGA-98-8020 TCGA-98-8021 TCGA-98-8023 TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-L3-A524 
        2.76        13.58        10.13         7.30         1.15        14.76 
TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE 
        1.18         2.73        56.61 

  10P GAIN MUTATED 10P GAIN WILD-TYPE 
              0.13               0.03 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
            173.82             141.34 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
            11.735             14.070 
[1] "0.1 - 173.8 (11.7)" "0.0 - 141.3 (14.1)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56U 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-43-A56V         TCGA-46-3768         TCGA-46-6025 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-46-6026         TCGA-51-4079         TCGA-51-4080 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-51-4081         TCGA-52-7622         TCGA-52-7809 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-52-7810         TCGA-52-7811         TCGA-52-7812 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-5898 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-56-A49D         TCGA-56-A4BW         TCGA-56-A4BX 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-56-A4BY         TCGA-56-A4ZJ         TCGA-56-A4ZK 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-56-A5DR         TCGA-56-A5DS         TCGA-58-8386 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-68-A59I 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-68-A59J         TCGA-77-6842         TCGA-77-6843 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-77-8150         TCGA-77-8153         TCGA-77-8154 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5FZ         TCGA-77-A5G3 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-A5GB         TCGA-77-A5GH         TCGA-85-6175 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56U 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-43-A56V         TCGA-46-3768         TCGA-46-6025 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-46-6026         TCGA-51-4079         TCGA-51-4080 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-51-4081         TCGA-52-7622         TCGA-52-7809 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-52-7810         TCGA-52-7811         TCGA-52-7812 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-5898 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-56-A49D         TCGA-56-A4BW         TCGA-56-A4BX 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-56-A4BY         TCGA-56-A4ZJ         TCGA-56-A4ZK 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-56-A5DR         TCGA-56-A5DS         TCGA-58-8386 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-68-A59I 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-68-A59J         TCGA-77-6842         TCGA-77-6843 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-77-8150         TCGA-77-8153         TCGA-77-8154 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5FZ         TCGA-77-A5G3 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-A5GB         TCGA-77-A5GH         TCGA-85-6175 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56U 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-43-A56V         TCGA-46-3768         TCGA-46-6025 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-46-6026         TCGA-51-4079         TCGA-51-4080 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-51-4081         TCGA-52-7622         TCGA-52-7809 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-52-7810         TCGA-52-7811         TCGA-52-7812 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-5898 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-56-A49D         TCGA-56-A4BW         TCGA-56-A4BX 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-56-A4BY         TCGA-56-A4ZJ         TCGA-56-A4ZK 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-56-A5DR         TCGA-56-A5DS         TCGA-58-8386 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-68-A59I 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-68-A59J         TCGA-77-6842         TCGA-77-6843 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-77-8150         TCGA-77-8153         TCGA-77-8154 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5FZ         TCGA-77-A5G3 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-A5GB         TCGA-77-A5GH         TCGA-85-6175 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" 
[1] "hr=" "1.2"
D19V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  10P GAIN MUTATED         0        9       13        1         9        12
  10P GAIN WILD-TYPE       1       60      123        0        41        58
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  10P GAIN MUTATED           10          3        1
  10P GAIN WILD-TYPE         44         17        4
D19V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  10P GAIN MUTATED    11  38   8   2
  10P GAIN WILD-TYPE  84 212  37  17
D19V4, multiclass
    clus
vv   10P GAIN MUTATED 10P GAIN WILD-TYPE
  T1               11                 84
  T2               38                212
  T3                8                 37
  T4                2                 17
                    vv
clus                  N0  N1  N2  N3
  10P GAIN MUTATED    32  19   5   1
  10P GAIN WILD-TYPE 223  90  29   4
D19V5, multiclass
    clus
vv   10P GAIN MUTATED 10P GAIN WILD-TYPE
  N0               32                223
  N1               19                 90
  N2                5                 29
  N3                1                  4
                    vv
clus                  M0  M1  MX
  10P GAIN MUTATED    51   1   6
  10P GAIN WILD-TYPE 298   4  43
D19V6, multiclass
    clus
vv   10P GAIN MUTATED 10P GAIN WILD-TYPE
  M0               51                298
  M1                1                  4
  MX                6                 43
D19V7, binary
                    cls
clus                   0   1
  10P GAIN MUTATED    10  49
  10P GAIN WILD-TYPE  94 256
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P GAIN MUTATED     10   49
  10P GAIN WILD-TYPE   94  256
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  FEMALE               10                 94
  MALE                 49                256
D19V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  10P GAIN MUTATED                                       2
  10P GAIN WILD-TYPE                                    10
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  10P GAIN MUTATED                                        0
  10P GAIN WILD-TYPE                                      6
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  10P GAIN MUTATED                                         0
  10P GAIN WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  10P GAIN MUTATED                                                            57
  10P GAIN WILD-TYPE                                                         333
D19V9, multiclass
                                                             clus
vv                                                            10P GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      2
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     0
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               57
                                                             clus
vv                                                            10P GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       10
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       6
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                333
D19V10, binary
                    cls
clus                   0   1
  10P GAIN MUTATED     2  57
  10P GAIN WILD-TYPE  11 339
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P GAIN MUTATED      2   57
  10P GAIN WILD-TYPE   11  339
     clus
vv    10P GAIN MUTATED 10P GAIN WILD-TYPE
  NO                 2                 11
  YES               57                339
D19V11, continuous
D19V12, continuous
                    vv
clus                  R0  R1  R2  RX
  10P GAIN MUTATED    49   0   1   1
  10P GAIN WILD-TYPE 283   8   3  17
D19V13, multiclass
    clus
vv   10P GAIN MUTATED 10P GAIN WILD-TYPE
  R0               49                283
  R1                0                  8
  R2                1                  3
  RX                1                 17

Clustering(20) Variable = 10Q GAIN MUTATION ANALYSIS
D20V1, survival
                    sevent
clus2                  0   1
  10Q GAIN MUTATED    21  11
  10Q GAIN WILD-TYPE 223 128
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                32                351 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                11                128 
$`10Q GAIN MUTATED`
TCGA-18-3416 TCGA-21-1070 TCGA-21-1083 TCGA-21-5786 TCGA-21-5787 TCGA-22-5473 
       28.34       119.54         8.78        33.93        10.82        63.55 
TCGA-33-4566 TCGA-33-4582 TCGA-34-2609 TCGA-34-5241 TCGA-34-5928 TCGA-37-4141 
      173.82       103.53        31.27        14.07        18.15         0.39 
TCGA-43-5670 TCGA-52-7811 TCGA-56-7222 TCGA-56-A5DR TCGA-60-2724 TCGA-60-2726 
       18.05         8.75         0.43         0.13        23.57        11.77 
TCGA-77-7140 TCGA-77-7142 TCGA-77-8130 TCGA-77-8150 TCGA-85-6561 TCGA-85-7843 
       20.78        42.28        82.92        54.41        12.99         1.15 
TCGA-85-8350 TCGA-85-8352 TCGA-85-A50M TCGA-85-A53L TCGA-90-7767 TCGA-90-A4ED 
        1.97         2.20         0.62         0.43         2.93         8.02 
TCGA-94-7943 TCGA-NC-A5HG 
       11.70        50.89 

$`10Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.01        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       11.34        13.02        59.51        24.92         1.64        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1071 
        6.15         2.79        90.54         3.02        27.19        46.88 
TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 
       99.16        70.16        60.89        34.78        15.58        31.73 
TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 
      122.43         9.34       119.80        31.63        88.11        41.69 
TCGA-21-A5DI TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 
       32.19        19.99         7.33        14.93         4.31        64.21 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 
        1.74        14.10        27.02        48.82        20.48        35.08 
TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 
       48.33        24.13         0.56        38.17        34.75        13.12 
TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       32.02        19.30         9.57        11.77        31.73        64.93 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 
       14.63        44.25         0.79        54.28        71.34        79.20 
TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 
       11.74        18.84        30.12        62.86        56.32        16.64 
TCGA-22-A5C4 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4583 
        0.95         7.63       114.05        97.94        43.10       141.34 
TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 
       14.07        54.44        10.82        19.76        27.02         2.63 
TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 
       61.61        31.50        28.96        32.88        50.24        67.79 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5927 TCGA-34-5929 
       56.38         9.07        23.24        12.00        30.94         4.96 
TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 
        1.12         3.95         0.43         0.39         6.58         8.12 
TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 
        7.46         7.82         6.81         3.39        47.80        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.75        68.58        55.20        70.03        60.79         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 
       24.33         1.94        27.39        36.39        15.58        35.64 
TCGA-39-5037 TCGA-39-5039 TCGA-39-5040 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 
       35.70        17.88        17.06        40.21        22.49        38.66 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       27.02        33.11        11.47        12.36        24.89        10.19 
TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 
        5.46         3.81         6.97         7.76        66.51        13.38 
TCGA-43-8116 TCGA-43-8118 TCGA-43-A474 TCGA-43-A475 TCGA-43-A56U TCGA-43-A56V 
       11.77         2.93        11.61         9.73        14.20        12.03 
TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 
        9.99        10.65        13.91         0.39         0.39        29.95 
TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 
       17.79         5.46        30.35        27.45        28.96         0.10 
TCGA-56-5898 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7223 TCGA-56-7579 
       18.25         2.04         0.62         0.99         0.99         1.45 
TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 TCGA-56-8503 TCGA-56-8504 
        1.32         0.85         0.20         0.03         1.35         5.85 
TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 
        1.81         1.18         2.07         0.56         0.53         1.12 
TCGA-56-A49D TCGA-56-A4BW TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A4ZK 
        1.25         0.07         1.51         0.99         0.82         0.13 
TCGA-56-A5DS TCGA-58-8386 TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 
        0.26         0.03        13.25        12.43        29.95        71.24 
TCGA-58-8392 TCGA-58-8393 TCGA-58-A46J TCGA-58-A46K TCGA-58-A46L TCGA-58-A46M 
       16.47        34.78        64.87        34.36        36.59        23.24 
TCGA-58-A46N TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 
       17.75        21.11         3.58        12.23        10.22        96.82 
TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
       37.94        92.71        21.73        80.45        49.48        66.54 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 
       41.42         9.01        56.91        50.33        35.34        48.49 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2725 
       42.64         3.19        32.32        29.85        35.90        26.83 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 
       16.96        43.10         2.01        21.07         0.99         1.02 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 
        2.01         0.92         0.99         0.99        21.01        25.05 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 
        0.99         2.01         1.02         2.01         2.01         7.07 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
       23.01        19.00         3.02         2.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 
        3.98        12.00        24.95         1.97        25.97        40.01 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 
       22.98         4.04        22.98         5.03        30.02        10.06 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 
       54.08         4.01        49.05         2.73         6.64         6.94 
TCGA-68-8250 TCGA-68-8251 TCGA-68-A59I TCGA-68-A59J TCGA-77-6842 TCGA-77-6843 
        8.02         3.16         3.98         3.42        29.56        73.12 
TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7141 TCGA-77-7335 
       75.09        23.28        11.18        89.98         0.49        70.13 
TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 TCGA-77-8008 
      106.95         0.16        46.78        15.75         6.51        86.76 
TCGA-77-8009 TCGA-77-8128 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 
       53.95        37.81        12.59        53.92        39.09        17.72 
TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 
      104.09        11.54        26.40        27.39         6.97         9.63 
TCGA-77-8153 TCGA-77-8154 TCGA-77-8156 TCGA-77-A5FZ TCGA-77-A5G3 TCGA-77-A5GB 
       55.36        35.90         0.33       126.18       117.57        30.81 
TCGA-77-A5GH TCGA-85-6175 TCGA-85-6560 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 
       23.44         9.67         0.36         1.12         0.59         0.33 
TCGA-85-7698 TCGA-85-7699 TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 
        1.61         0.03         1.25         1.97         0.85         1.97 
TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 
        0.53        16.77        14.07        16.87         0.43         0.36 
TCGA-85-8287 TCGA-85-8288 TCGA-85-8351 TCGA-85-8353 TCGA-85-8354 TCGA-85-8355 
        1.45         1.78         1.81         1.78         2.01         2.01 
TCGA-85-8479 TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 TCGA-85-8666 
        0.72         0.69        14.63        13.94         0.10        15.62 
TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A513 TCGA-90-6837 TCGA-90-7766 TCGA-90-7769 
        0.49         0.82         0.79        24.92         9.50        11.77 
TCGA-90-7964 TCGA-90-A4EE TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 
       14.07        10.88         2.70         3.48         4.01         5.26 
TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 
        2.30         2.86         0.16        39.88        44.19         6.21 
TCGA-96-8170 TCGA-96-A4JK TCGA-96-A4JL TCGA-98-7454 TCGA-98-8020 TCGA-98-8021 
        6.94         8.98         6.02         8.42         2.76        13.58 
TCGA-98-8022 TCGA-98-8023 TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-L3-A524 TCGA-LA-A446 
        7.36        10.13         7.30         1.15        14.76         1.18 
TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HI 
        2.73        56.61        37.32 

  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
              0.13               0.03 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
            173.82             141.34 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
             13.53              13.38 
[1] "0.1 - 173.8 (13.5)" "0.0 - 141.3 (13.4)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "10Q GAIN MUTATED"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56U 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-43-A56V         TCGA-46-3768         TCGA-46-6025 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-46-6026         TCGA-51-4079         TCGA-51-4080 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-51-4081         TCGA-52-7622         TCGA-52-7809 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-52-7810         TCGA-52-7811         TCGA-52-7812 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-5898 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-56-A49D         TCGA-56-A4BW         TCGA-56-A4BX 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-56-A4BY         TCGA-56-A4ZJ         TCGA-56-A4ZK 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-56-A5DR         TCGA-56-A5DS         TCGA-58-8386 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-68-A59I 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-68-A59J         TCGA-77-6842         TCGA-77-6843 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8153         TCGA-77-8154 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5FZ         TCGA-77-A5G3 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-A5GB         TCGA-77-A5GH         TCGA-85-6175 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "10Q GAIN MUTATED"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56U 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-43-A56V         TCGA-46-3768         TCGA-46-6025 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-46-6026         TCGA-51-4079         TCGA-51-4080 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-51-4081         TCGA-52-7622         TCGA-52-7809 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-52-7810         TCGA-52-7811         TCGA-52-7812 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-5898 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-56-A49D         TCGA-56-A4BW         TCGA-56-A4BX 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-56-A4BY         TCGA-56-A4ZJ         TCGA-56-A4ZK 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-56-A5DR         TCGA-56-A5DS         TCGA-58-8386 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-68-A59I 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-68-A59J         TCGA-77-6842         TCGA-77-6843 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8153         TCGA-77-8154 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5FZ         TCGA-77-A5G3 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-A5GB         TCGA-77-A5GH         TCGA-85-6175 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "10Q GAIN MUTATED"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56U 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-43-A56V         TCGA-46-3768         TCGA-46-6025 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-46-6026         TCGA-51-4079         TCGA-51-4080 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-51-4081         TCGA-52-7622         TCGA-52-7809 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-52-7810         TCGA-52-7811         TCGA-52-7812 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-5898 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-56-A49D         TCGA-56-A4BW         TCGA-56-A4BX 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-56-A4BY         TCGA-56-A4ZJ         TCGA-56-A4ZK 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-56-A5DR         TCGA-56-A5DS         TCGA-58-8386 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-68-A59I 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-68-A59J         TCGA-77-6842         TCGA-77-6843 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8153         TCGA-77-8154 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5FZ         TCGA-77-A5G3 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-A5GB         TCGA-77-A5GH         TCGA-85-6175 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
[1] "hr=" "1.4"
D20V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  10Q GAIN MUTATED         0        6        8        0         6         7
  10Q GAIN WILD-TYPE       1       63      128        1        44        63
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  10Q GAIN MUTATED            6          0        0
  10Q GAIN WILD-TYPE         48         20        5
D20V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  10Q GAIN MUTATED     6  23   5   0
  10Q GAIN WILD-TYPE  89 227  40  19
D20V4, multiclass
    clus
vv   10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  T1                6                 89
  T2               23                227
  T3                5                 40
  T4                0                 19
                    vv
clus                  N0  N1  N2  N3
  10Q GAIN MUTATED    18  12   2   0
  10Q GAIN WILD-TYPE 237  97  32   5
D20V5, multiclass
    clus
vv   10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  N0               18                237
  N1               12                 97
  N2                2                 32
  N3                0                  5
                    vv
clus                  M0  M1  MX
  10Q GAIN MUTATED    29   0   4
  10Q GAIN WILD-TYPE 320   5  45
D20V6, multiclass
    clus
vv   10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  M0               29                320
  M1                0                  5
  MX                4                 45
D20V7, binary
                    cls
clus                   0   1
  10Q GAIN MUTATED     6  28
  10Q GAIN WILD-TYPE  98 277
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q GAIN MUTATED      6   28
  10Q GAIN WILD-TYPE   98  277
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  FEMALE                6                 98
  MALE                 28                277
D20V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  10Q GAIN MUTATED                                       1
  10Q GAIN WILD-TYPE                                    11
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  10Q GAIN MUTATED                                        0
  10Q GAIN WILD-TYPE                                      6
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  10Q GAIN MUTATED                                         0
  10Q GAIN WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  10Q GAIN MUTATED                                                            33
  10Q GAIN WILD-TYPE                                                         357
D20V9, multiclass
                                                             clus
vv                                                            10Q GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      1
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     0
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               33
                                                             clus
vv                                                            10Q GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       11
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       6
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                357
D20V10, binary
                    cls
clus                   0   1
  10Q GAIN MUTATED     2  32
  10Q GAIN WILD-TYPE  11 364
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q GAIN MUTATED      2   32
  10Q GAIN WILD-TYPE   11  364
     clus
vv    10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  NO                 2                 11
  YES               32                364
D20V11, continuous
D20V12, continuous
                    vv
clus                  R0  R1  R2  RX
  10Q GAIN MUTATED    29   0   0   0
  10Q GAIN WILD-TYPE 303   8   4  18
D20V13, multiclass
    clus
vv   10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  R0               29                303
  R1                0                  8
  R2                0                  4
  RX                0                 18

Clustering(21) Variable = 11P GAIN MUTATION ANALYSIS
D21V1, survival
                    sevent
clus2                  0   1
  11P GAIN MUTATED    35  24
  11P GAIN WILD-TYPE 209 115
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                59                324 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                24                115 
$`11P GAIN MUTATED`
TCGA-18-3407 TCGA-18-3410 TCGA-21-1070 TCGA-21-1072 TCGA-21-1079 TCGA-21-5783 
        4.47         4.80       119.54        99.16        31.73        88.11 
TCGA-22-1012 TCGA-22-4591 TCGA-22-4594 TCGA-22-4595 TCGA-22-5491 TCGA-33-4582 
       14.10        20.48        48.33        24.13        56.32       103.53 
TCGA-33-4583 TCGA-34-5239 TCGA-39-5027 TCGA-39-5029 TCGA-39-5034 TCGA-39-5036 
      141.34        23.24        60.79        24.33        36.39        35.64 
TCGA-43-2578 TCGA-43-5668 TCGA-43-5670 TCGA-43-6771 TCGA-43-A474 TCGA-46-6026 
       22.49        11.47        18.05         5.46        11.61        13.91 
TCGA-52-7809 TCGA-52-7810 TCGA-56-1622 TCGA-56-6545 TCGA-56-7730 TCGA-56-A49D 
        5.46        30.35        28.96         2.04         0.20         1.25 
TCGA-56-A4BX TCGA-60-2719 TCGA-60-2722 TCGA-66-2734 TCGA-66-2744 TCGA-66-2765 
        1.51        42.64        29.85        43.10         0.99         2.01 
TCGA-66-2766 TCGA-66-2770 TCGA-66-2777 TCGA-66-2785 TCGA-66-2791 TCGA-68-7755 
        1.02        23.01         2.01         1.97         5.03         2.73 
TCGA-77-6842 TCGA-77-6845 TCGA-77-7138 TCGA-77-7142 TCGA-77-7463 TCGA-77-8007 
       29.56        23.28        11.18        42.28        46.78         6.51 
TCGA-77-8139 TCGA-77-A5G3 TCGA-77-A5GB TCGA-85-6560 TCGA-85-8276 TCGA-90-7767 
      104.09       117.57        30.81         0.36         0.43         2.93 
TCGA-90-A4EE TCGA-92-8064 TCGA-94-7943 TCGA-96-8169 TCGA-96-A4JK 
       10.88         5.26        11.70         6.21         8.98 

$`11P GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3408 TCGA-18-3409 TCGA-18-3411 TCGA-18-3412 TCGA-18-3414 
       12.16        81.01        79.46        46.52        11.34        13.02 
TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 
       59.51        28.34        24.92         1.64        43.76         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1071 TCGA-21-1075 
        2.79        90.54         3.02        27.19        46.88        70.16 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 
       60.89        34.78        15.58       122.43         9.34       119.80 
TCGA-21-1083 TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-21-A5DI 
        8.78        31.63        41.69        33.93        10.82        32.19 
TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 
       19.99         7.33        14.93         4.31        64.21         1.74 
TCGA-22-1016 TCGA-22-1017 TCGA-22-4593 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 
       27.02        48.82        35.08         0.56        38.17        34.75 
TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 
       13.12        32.02        19.30         9.57        11.77        31.73 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 
       64.93        63.55        14.63        44.25         0.79        54.28 
TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 
       71.34        79.20        11.74        18.84        30.12        62.86 
TCGA-22-5492 TCGA-22-A5C4 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       16.64         0.95         7.63       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 
      173.82        14.07        54.44        10.82        19.76        27.02 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 
        2.63        61.61        31.50        28.96        32.88        31.27 
TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5240 TCGA-34-5241 
       50.24        67.79        56.38         9.07        12.00        14.07 
TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 
       30.94        18.15         4.96         1.12         3.95         0.43 
TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 
        0.39         6.58         8.12         7.46         7.82         6.81 
TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 
        0.39         3.39        47.80        74.07        44.75        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 
       55.20        70.03         1.71         1.94        27.39        15.58 
TCGA-39-5037 TCGA-39-5039 TCGA-39-5040 TCGA-43-2576 TCGA-43-2581 TCGA-43-3394 
       35.70        17.88        17.06        40.21        38.66        27.02 
TCGA-43-3920 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6773 TCGA-43-7656 
       33.11        12.36        24.89        10.19         3.81         6.97 
TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 TCGA-43-A475 
        7.76        66.51        13.38        11.77         2.93         9.73 
TCGA-43-A56U TCGA-43-A56V TCGA-46-3768 TCGA-46-6025 TCGA-51-4079 TCGA-51-4080 
       14.20        12.03         9.99        10.65         0.39         0.39 
TCGA-51-4081 TCGA-52-7622 TCGA-52-7811 TCGA-52-7812 TCGA-56-5897 TCGA-56-5898 
       29.95        17.79         8.75        27.45         0.10        18.25 
TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 
        0.62         0.99         0.43         0.99         1.45         1.32 
TCGA-56-7582 TCGA-56-7822 TCGA-56-8503 TCGA-56-8504 TCGA-56-8622 TCGA-56-8624 
        0.85         0.03         1.35         5.85         1.81         1.18 
TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 TCGA-56-A4BW TCGA-56-A4BY 
        2.07         0.56         0.53         1.12         0.07         0.99 
TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DR TCGA-56-A5DS TCGA-58-8386 TCGA-58-8387 
        0.82         0.13         0.13         0.26         0.03        13.25 
TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 TCGA-58-8393 TCGA-58-A46J 
       12.43        29.95        71.24        16.47        34.78        64.87 
TCGA-58-A46K TCGA-58-A46L TCGA-58-A46M TCGA-58-A46N TCGA-60-2695 TCGA-60-2696 
       34.36        36.59        23.24        17.75        21.11         3.58 
TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 
       12.23        10.22        96.82        37.94        92.71        21.73 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 
       80.45        49.48        66.54        41.42         9.01        56.91 
TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2720 TCGA-60-2721 TCGA-60-2723 
       50.33        35.34        48.49         3.19        32.32        35.90 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2737 TCGA-66-2742 
       23.57        26.83        11.77        16.96         2.01        21.07 
TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 
        1.02         2.01         0.92         0.99         0.99        21.01 
TCGA-66-2759 TCGA-66-2763 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2771 
       25.05         0.99         2.01         2.01         7.07        19.00 
TCGA-66-2773 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        3.02        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2792 
       25.97        40.01        22.98         4.04        22.98        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7756 TCGA-68-7757 
       10.06        54.08         4.01        49.05         6.64         6.94 
TCGA-68-8250 TCGA-68-8251 TCGA-68-A59I TCGA-68-A59J TCGA-77-6843 TCGA-77-6844 
        8.02         3.16         3.98         3.42        73.12        75.09 
TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 
       89.98        20.78         0.49        70.13       106.95         0.16 
TCGA-77-7465 TCGA-77-8008 TCGA-77-8009 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 
       15.75        86.76        53.95        37.81        82.92        12.59 
TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 
       53.92        39.09        17.72        11.54        26.40        27.39 
TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-77-8153 TCGA-77-8154 TCGA-77-8156 
        6.97         9.63        54.41        55.36        35.90         0.33 
TCGA-77-A5FZ TCGA-77-A5GH TCGA-85-6175 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 
      126.18        23.44         9.67        12.99         1.12         0.59 
TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 
        0.33         1.61         0.03         1.15         1.25         1.97 
TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 
        0.85         1.97         0.53        16.77        14.07        16.87 
TCGA-85-8277 TCGA-85-8287 TCGA-85-8288 TCGA-85-8350 TCGA-85-8351 TCGA-85-8352 
        0.36         1.45         1.78         1.97         1.81         2.20 
TCGA-85-8353 TCGA-85-8354 TCGA-85-8355 TCGA-85-8479 TCGA-85-8481 TCGA-85-8580 
        1.78         2.01         2.01         0.72         0.69        14.63 
TCGA-85-8582 TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A50M 
       13.94         0.10        15.62         0.49         0.82         0.62 
TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 TCGA-90-7766 TCGA-90-7769 TCGA-90-7964 
        0.79         0.43        24.92         9.50        11.77        14.07 
TCGA-90-A4ED TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8065 TCGA-94-7033 
        8.02         2.70         3.48         4.01         2.30         2.86 
TCGA-94-7557 TCGA-96-7544 TCGA-96-7545 TCGA-96-8170 TCGA-96-A4JL TCGA-98-7454 
        0.16        39.88        44.19         6.94         6.02         8.42 
TCGA-98-8020 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 TCGA-J1-A4AH TCGA-L3-A4E7 
        2.76        13.58         7.36        10.13         7.30         1.15 
TCGA-L3-A524 TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HG TCGA-NC-A5HI 
       14.76         1.18         2.73        56.61        50.89        37.32 

  11P GAIN MUTATED 11P GAIN WILD-TYPE 
              0.20               0.03 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
            141.34             173.82 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
             18.05              13.07 
[1] "0.2 - 141.3 (18.1)" "0.0 - 173.8 (13.1)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
  "11P GAIN MUTATED"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56U 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-43-A56V         TCGA-46-3768         TCGA-46-6025 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-46-6026         TCGA-51-4079         TCGA-51-4080 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-51-4081         TCGA-52-7622         TCGA-52-7809 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-52-7810         TCGA-52-7811         TCGA-52-7812 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-5898 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-56-A49D         TCGA-56-A4BW         TCGA-56-A4BX 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-56-A4BY         TCGA-56-A4ZJ         TCGA-56-A4ZK 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-56-A5DR         TCGA-56-A5DS         TCGA-58-8386 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED"   "11P GAIN MUTATED" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-68-A59I 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-68-A59J         TCGA-77-6842         TCGA-77-6843 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED"   "11P GAIN MUTATED" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8153         TCGA-77-8154 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5FZ         TCGA-77-A5G3 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-77-A5GB         TCGA-77-A5GH         TCGA-85-6175 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
  "11P GAIN MUTATED"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56U 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-43-A56V         TCGA-46-3768         TCGA-46-6025 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-46-6026         TCGA-51-4079         TCGA-51-4080 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-51-4081         TCGA-52-7622         TCGA-52-7809 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-52-7810         TCGA-52-7811         TCGA-52-7812 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-5898 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-56-A49D         TCGA-56-A4BW         TCGA-56-A4BX 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-56-A4BY         TCGA-56-A4ZJ         TCGA-56-A4ZK 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-56-A5DR         TCGA-56-A5DS         TCGA-58-8386 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED"   "11P GAIN MUTATED" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-68-A59I 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-68-A59J         TCGA-77-6842         TCGA-77-6843 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED"   "11P GAIN MUTATED" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8153         TCGA-77-8154 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5FZ         TCGA-77-A5G3 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-77-A5GB         TCGA-77-A5GH         TCGA-85-6175 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
  "11P GAIN MUTATED"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56U 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-43-A56V         TCGA-46-3768         TCGA-46-6025 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-46-6026         TCGA-51-4079         TCGA-51-4080 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-51-4081         TCGA-52-7622         TCGA-52-7809 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-52-7810         TCGA-52-7811         TCGA-52-7812 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-5898 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-56-A49D         TCGA-56-A4BW         TCGA-56-A4BX 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-56-A4BY         TCGA-56-A4ZJ         TCGA-56-A4ZK 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-56-A5DR         TCGA-56-A5DS         TCGA-58-8386 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED"   "11P GAIN MUTATED" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-68-A59I 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-68-A59J         TCGA-77-6842         TCGA-77-6843 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED"   "11P GAIN MUTATED" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8153         TCGA-77-8154 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5FZ         TCGA-77-A5G3 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-77-A5GB         TCGA-77-A5GH         TCGA-85-6175 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
[1] "hr=" "1"  
D21V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  11P GAIN MUTATED         0        7       21        0        11        11
  11P GAIN WILD-TYPE       1       62      115        1        39        59
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  11P GAIN MUTATED            9          2        0
  11P GAIN WILD-TYPE         45         18        5
D21V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  11P GAIN MUTATED    13  36  11   1
  11P GAIN WILD-TYPE  82 214  34  18
D21V4, multiclass
    clus
vv   11P GAIN MUTATED 11P GAIN WILD-TYPE
  T1               13                 82
  T2               36                214
  T3               11                 34
  T4                1                 18
                    vv
clus                  N0  N1  N2  N3
  11P GAIN MUTATED    39  13   6   1
  11P GAIN WILD-TYPE 216  96  28   4
D21V5, multiclass
    clus
vv   11P GAIN MUTATED 11P GAIN WILD-TYPE
  N0               39                216
  N1               13                 96
  N2                6                 28
  N3                1                  4
                    vv
clus                  M0  M1  MX
  11P GAIN MUTATED    53   0   7
  11P GAIN WILD-TYPE 296   5  42
D21V6, multiclass
    clus
vv   11P GAIN MUTATED 11P GAIN WILD-TYPE
  M0               53                296
  M1                0                  5
  MX                7                 42
D21V7, binary
                    cls
clus                   0   1
  11P GAIN MUTATED    12  49
  11P GAIN WILD-TYPE  92 256
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P GAIN MUTATED     12   49
  11P GAIN WILD-TYPE   92  256
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  FEMALE               12                 92
  MALE                 49                256
D21V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  11P GAIN MUTATED                                       1
  11P GAIN WILD-TYPE                                    11
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  11P GAIN MUTATED                                        1
  11P GAIN WILD-TYPE                                      5
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  11P GAIN MUTATED                                         0
  11P GAIN WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  11P GAIN MUTATED                                                            59
  11P GAIN WILD-TYPE                                                         331
D21V9, multiclass
                                                             clus
vv                                                            11P GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      1
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               59
                                                             clus
vv                                                            11P GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       11
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                331
D21V10, binary
                    cls
clus                   0   1
  11P GAIN MUTATED     2  59
  11P GAIN WILD-TYPE  11 337
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P GAIN MUTATED      2   59
  11P GAIN WILD-TYPE   11  337
     clus
vv    11P GAIN MUTATED 11P GAIN WILD-TYPE
  NO                 2                 11
  YES               59                337
D21V11, continuous
D21V12, continuous
                    vv
clus                  R0  R1  R2  RX
  11P GAIN MUTATED    48   1   1   3
  11P GAIN WILD-TYPE 284   7   3  15
D21V13, multiclass
    clus
vv   11P GAIN MUTATED 11P GAIN WILD-TYPE
  R0               48                284
  R1                1                  7
  R2                1                  3
  RX                3                 15

Clustering(22) Variable = 11Q GAIN MUTATION ANALYSIS
D22V1, survival
                    sevent
clus2                  0   1
  11Q GAIN MUTATED    45  24
  11Q GAIN WILD-TYPE 199 115
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                69                314 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                24                115 
$`11Q GAIN MUTATED`
TCGA-18-3410 TCGA-21-1070 TCGA-21-1072 TCGA-21-1079 TCGA-21-5786 TCGA-22-1012 
        4.80       119.54        99.16        31.73        33.93        14.10 
TCGA-22-4591 TCGA-22-4594 TCGA-22-4595 TCGA-22-5491 TCGA-33-4582 TCGA-33-4583 
       20.48        48.33        24.13        56.32       103.53       141.34 
TCGA-34-5231 TCGA-34-5239 TCGA-37-4132 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
       50.24        23.24         7.46         6.81         0.39         3.39 
TCGA-39-5011 TCGA-39-5029 TCGA-39-5034 TCGA-39-5036 TCGA-43-2578 TCGA-43-5668 
       47.80        24.33        36.39        35.64        22.49        11.47 
TCGA-43-5670 TCGA-43-6143 TCGA-43-6771 TCGA-52-7810 TCGA-56-1622 TCGA-56-5898 
       18.05        12.36         5.46        30.35        28.96        18.25 
TCGA-56-6545 TCGA-56-7730 TCGA-56-A49D TCGA-56-A5DR TCGA-60-2719 TCGA-60-2720 
        2.04         0.20         1.25         0.13        42.64         3.19 
TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2759 TCGA-66-2763 TCGA-66-2777 
       43.10         2.01        21.07        25.05         0.99         2.01 
TCGA-66-2781 TCGA-66-2786 TCGA-66-2789 TCGA-66-2791 TCGA-68-7755 TCGA-77-6842 
        3.98        25.97         4.04         5.03         2.73        29.56 
TCGA-77-6845 TCGA-77-7138 TCGA-77-7141 TCGA-77-7142 TCGA-77-7337 TCGA-77-7463 
       23.28        11.18         0.49        42.28       106.95        46.78 
TCGA-77-8007 TCGA-77-8139 TCGA-77-8154 TCGA-77-A5GB TCGA-85-6560 TCGA-85-7843 
        6.51       104.09        35.90        30.81         0.36         1.15 
TCGA-85-7950 TCGA-85-8276 TCGA-85-8353 TCGA-85-A53L TCGA-90-7767 TCGA-90-A4EE 
        1.97         0.43         1.78         0.43         2.93        10.88 
TCGA-92-8064 TCGA-94-7943 TCGA-96-A4JK 
        5.26        11.70         8.98 

$`11Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.01        79.46        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.64        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1071 
        6.15         2.79        90.54         3.02        27.19        46.88 
TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1080 TCGA-21-1081 
       70.16        60.89        34.78        15.58       122.43         9.34 
TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-5787 
      119.80         8.78        31.63        88.11        41.69        10.82 
TCGA-21-A5DI TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 
       32.19        19.99         7.33        14.93         4.31        64.21 
TCGA-22-1011 TCGA-22-1016 TCGA-22-1017 TCGA-22-4593 TCGA-22-4596 TCGA-22-4599 
        1.74        27.02        48.82        35.08         0.56        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 
       34.75        13.12        32.02        19.30         9.57        11.77 
TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 
       31.73        64.93        63.55        14.63        44.25         0.79 
TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 
       54.28        71.34        79.20        11.74        18.84        30.12 
TCGA-22-5489 TCGA-22-5492 TCGA-22-A5C4 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        16.64         0.95         7.63       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 
       43.10       173.82        14.07        54.44        10.82        19.76 
TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 
       27.02         2.63        61.61        31.50        28.96        32.88 
TCGA-34-2609 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5240 TCGA-34-5241 
       31.27        67.79        56.38         9.07        12.00        14.07 
TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 
       30.94        18.15         4.96         1.12         3.95         0.43 
TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4133 TCGA-39-5016 TCGA-39-5019 
        0.39         6.58         8.12         7.82        74.07        44.75 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5030 
       68.58        55.20        70.03        60.79         1.71         1.94 
TCGA-39-5031 TCGA-39-5035 TCGA-39-5037 TCGA-39-5039 TCGA-39-5040 TCGA-43-2576 
       27.39        15.58        35.70        17.88        17.06        40.21 
TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 TCGA-43-6647 TCGA-43-6770 TCGA-43-6773 
       38.66        27.02        33.11        24.89        10.19         3.81 
TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 
        6.97         7.76        66.51        13.38        11.77         2.93 
TCGA-43-A474 TCGA-43-A475 TCGA-43-A56U TCGA-43-A56V TCGA-46-3768 TCGA-46-6025 
       11.61         9.73        14.20        12.03         9.99        10.65 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 
       13.91         0.39         0.39        29.95        17.79         5.46 
TCGA-52-7811 TCGA-52-7812 TCGA-56-5897 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 
        8.75        27.45         0.10         0.62         0.99         0.43 
TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-56-7822 TCGA-56-8503 
        0.99         1.45         1.32         0.85         0.03         1.35 
TCGA-56-8504 TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 
        5.85         1.81         1.18         2.07         0.56         0.53 
TCGA-56-8629 TCGA-56-A4BW TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A4ZK 
        1.12         0.07         1.51         0.99         0.82         0.13 
TCGA-56-A5DS TCGA-58-8386 TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 
        0.26         0.03        13.25        12.43        29.95        71.24 
TCGA-58-8392 TCGA-58-8393 TCGA-58-A46J TCGA-58-A46K TCGA-58-A46L TCGA-58-A46M 
       16.47        34.78        64.87        34.36        36.59        23.24 
TCGA-58-A46N TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 
       17.75        21.11         3.58        12.23        10.22        96.82 
TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
       37.94        92.71        21.73        80.45        49.48        66.54 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 
       41.42         9.01        56.91        50.33        35.34        48.49 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 
       32.32        29.85        35.90        23.57        26.83        11.77 
TCGA-66-2727 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       16.96         0.99         1.02         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
        0.99        21.01         2.01         1.02         2.01         2.01 
TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2778 TCGA-66-2780 
        7.07        23.01        19.00         3.02        19.00        12.03 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2787 TCGA-66-2788 TCGA-66-2790 
       12.00        24.95         1.97        40.01        22.98        22.98 
TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7756 
       30.02        10.06        54.08         4.01        49.05         6.64 
TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 TCGA-68-A59I TCGA-68-A59J TCGA-77-6843 
        6.94         8.02         3.16         3.98         3.42        73.12 
TCGA-77-6844 TCGA-77-7139 TCGA-77-7140 TCGA-77-7335 TCGA-77-7338 TCGA-77-7465 
       75.09        89.98        20.78        70.13         0.16        15.75 
TCGA-77-8008 TCGA-77-8009 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 
       86.76        53.95        37.81        82.92        12.59        53.92 
TCGA-77-8136 TCGA-77-8138 TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 
       39.09        17.72        11.54        26.40        27.39         6.97 
TCGA-77-8148 TCGA-77-8150 TCGA-77-8153 TCGA-77-8156 TCGA-77-A5FZ TCGA-77-A5G3 
        9.63        54.41        55.36         0.33       126.18       117.57 
TCGA-77-A5GH TCGA-85-6175 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 
       23.44         9.67        12.99         1.12         0.59         0.33 
TCGA-85-7698 TCGA-85-7699 TCGA-85-7844 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 
        1.61         0.03         1.25         0.85         1.97         0.53 
TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-85-8277 TCGA-85-8287 TCGA-85-8288 
       16.77        14.07        16.87         0.36         1.45         1.78 
TCGA-85-8350 TCGA-85-8351 TCGA-85-8352 TCGA-85-8354 TCGA-85-8355 TCGA-85-8479 
        1.97         1.81         2.20         2.01         2.01         0.72 
TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL 
        0.69        14.63        13.94         0.10        15.62         0.49 
TCGA-85-A4QR TCGA-85-A50M TCGA-85-A513 TCGA-90-6837 TCGA-90-7766 TCGA-90-7769 
        0.82         0.62         0.79        24.92         9.50        11.77 
TCGA-90-7964 TCGA-90-A4ED TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8065 
       14.07         8.02         2.70         3.48         4.01         2.30 
TCGA-94-7033 TCGA-94-7557 TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 
        2.86         0.16        39.88        44.19         6.21         6.94 
TCGA-96-A4JL TCGA-98-7454 TCGA-98-8020 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
        6.02         8.42         2.76        13.58         7.36        10.13 
TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-L3-A524 TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE 
        7.30         1.15        14.76         1.18         2.73        56.61 
TCGA-NC-A5HG TCGA-NC-A5HI 
       50.89        37.32 

  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
              0.13               0.03 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
            141.34             173.82 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
            14.100             13.315 
[1] "0.1 - 141.3 (14.1)" "0.0 - 173.8 (13.3)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
  "11Q GAIN MUTATED"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED"   "11Q GAIN MUTATED" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
  "11Q GAIN MUTATED"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "11Q GAIN MUTATED"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56U 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-43-A56V         TCGA-46-3768         TCGA-46-6025 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-46-6026         TCGA-51-4079         TCGA-51-4080 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-51-4081         TCGA-52-7622         TCGA-52-7809 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-52-7810         TCGA-52-7811         TCGA-52-7812 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-5898 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-56-A49D         TCGA-56-A4BW         TCGA-56-A4BX 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-56-A4BY         TCGA-56-A4ZJ         TCGA-56-A4ZK 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-56-A5DR         TCGA-56-A5DS         TCGA-58-8386 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED"   "11Q GAIN MUTATED" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED"   "11Q GAIN MUTATED" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-68-A59I 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-68-A59J         TCGA-77-6842         TCGA-77-6843 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED"   "11Q GAIN MUTATED" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8153         TCGA-77-8154 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-77-8156         TCGA-77-A5FZ         TCGA-77-A5G3 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-77-A5GB         TCGA-77-A5GH         TCGA-85-6175 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
  "11Q GAIN MUTATED"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED"   "11Q GAIN MUTATED" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
  "11Q GAIN MUTATED"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "11Q GAIN MUTATED"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56U 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-43-A56V         TCGA-46-3768         TCGA-46-6025 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-46-6026         TCGA-51-4079         TCGA-51-4080 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-51-4081         TCGA-52-7622         TCGA-52-7809 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-52-7810         TCGA-52-7811         TCGA-52-7812 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-5898 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-56-A49D         TCGA-56-A4BW         TCGA-56-A4BX 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-56-A4BY         TCGA-56-A4ZJ         TCGA-56-A4ZK 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-56-A5DR         TCGA-56-A5DS         TCGA-58-8386 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED"   "11Q GAIN MUTATED" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED"   "11Q GAIN MUTATED" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-68-A59I 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-68-A59J         TCGA-77-6842         TCGA-77-6843 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED"   "11Q GAIN MUTATED" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
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        TCGA-77-A5GB         TCGA-77-A5GH         TCGA-85-6175 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
  "11Q GAIN MUTATED"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED"   "11Q GAIN MUTATED" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
  "11Q GAIN MUTATED"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "11Q GAIN MUTATED"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56U 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-43-A56V         TCGA-46-3768         TCGA-46-6025 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-46-6026         TCGA-51-4079         TCGA-51-4080 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-51-4081         TCGA-52-7622         TCGA-52-7809 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-52-7810         TCGA-52-7811         TCGA-52-7812 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-5898 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-56-A49D         TCGA-56-A4BW         TCGA-56-A4BX 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-56-A4BY         TCGA-56-A4ZJ         TCGA-56-A4ZK 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-56-A5DR         TCGA-56-A5DS         TCGA-58-8386 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED"   "11Q GAIN MUTATED" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED"   "11Q GAIN MUTATED" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-68-A59I 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-68-A59J         TCGA-77-6842         TCGA-77-6843 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED"   "11Q GAIN MUTATED" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8153         TCGA-77-8154 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-77-8156         TCGA-77-A5FZ         TCGA-77-A5G3 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-77-A5GB         TCGA-77-A5GH         TCGA-85-6175 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D22V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  11Q GAIN MUTATED         0       13       21        0        11        12
  11Q GAIN WILD-TYPE       1       56      115        1        39        58
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  11Q GAIN MUTATED           11          4        2
  11Q GAIN WILD-TYPE         43         16        3
D22V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  11Q GAIN MUTATED    20  40  13   1
  11Q GAIN WILD-TYPE  75 210  32  18
D22V4, multiclass
    clus
vv   11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  T1               20                 75
  T2               40                210
  T3               13                 32
  T4                1                 18
                    vv
clus                  N0  N1  N2  N3
  11Q GAIN MUTATED    47  16   7   2
  11Q GAIN WILD-TYPE 208  93  27   3
D22V5, multiclass
    clus
vv   11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  N0               47                208
  N1               16                 93
  N2                7                 27
  N3                2                  3
                    vv
clus                  M0  M1  MX
  11Q GAIN MUTATED    64   2   7
  11Q GAIN WILD-TYPE 285   3  42
D22V6, multiclass
    clus
vv   11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  M0               64                285
  M1                2                  3
  MX                7                 42
D22V7, binary
                    cls
clus                   0   1
  11Q GAIN MUTATED    19  55
  11Q GAIN WILD-TYPE  85 250
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q GAIN MUTATED     19   55
  11Q GAIN WILD-TYPE   85  250
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  FEMALE               19                 85
  MALE                 55                250
D22V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  11Q GAIN MUTATED                                       1
  11Q GAIN WILD-TYPE                                    11
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  11Q GAIN MUTATED                                        1
  11Q GAIN WILD-TYPE                                      5
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  11Q GAIN MUTATED                                         0
  11Q GAIN WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  11Q GAIN MUTATED                                                            72
  11Q GAIN WILD-TYPE                                                         318
D22V9, multiclass
                                                             clus
vv                                                            11Q GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      1
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               72
                                                             clus
vv                                                            11Q GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       11
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                318
D22V10, binary
                    cls
clus                   0   1
  11Q GAIN MUTATED     1  73
  11Q GAIN WILD-TYPE  12 323
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q GAIN MUTATED      1   73
  11Q GAIN WILD-TYPE   12  323
     clus
vv    11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  NO                 1                 12
  YES               73                323
D22V11, continuous
D22V12, continuous
                    vv
clus                  R0  R1  R2  RX
  11Q GAIN MUTATED    60   1   0   5
  11Q GAIN WILD-TYPE 272   7   4  13
D22V13, multiclass
    clus
vv   11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  R0               60                272
  R1                1                  7
  R2                0                  4
  RX                5                 13

Clustering(23) Variable = 12P GAIN MUTATION ANALYSIS
D23V1, survival
                    sevent
clus2                  0   1
  12P GAIN MUTATED   110  65
  12P GAIN WILD-TYPE 134  74
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
               175                208 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                65                 74 
$`12P GAIN MUTATED`
TCGA-18-3410 TCGA-18-3412 TCGA-18-3417 TCGA-18-3421 TCGA-18-4083 TCGA-18-4721 
        4.80        11.34        24.92        43.76         6.15        90.54 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 TCGA-21-1077 TCGA-21-1079 TCGA-21-1083 
      119.54        46.88        99.16        34.78        31.73         8.78 
TCGA-21-5782 TCGA-21-5786 TCGA-21-5787 TCGA-21-A5DI TCGA-22-1012 TCGA-22-1017 
       31.63        33.93        10.82        32.19        14.10        48.82 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       20.48        35.08        48.33        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-5471 TCGA-22-5473 TCGA-22-5477 TCGA-22-5480 TCGA-22-5482 
       13.12        31.73        63.55        44.25        71.34        11.74 
TCGA-22-5489 TCGA-22-5491 TCGA-33-4532 TCGA-33-4538 TCGA-33-4566 TCGA-33-4582 
       62.86        56.32         7.63        97.94       173.82       103.53 
TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 TCGA-34-2605 
      141.34        14.07        19.76        27.02         2.63        28.96 
TCGA-34-2609 TCGA-34-5231 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5928 
       31.27        50.24        23.24        12.00        14.07        18.15 
TCGA-34-7107 TCGA-37-3792 TCGA-39-5019 TCGA-39-5021 TCGA-39-5034 TCGA-39-5035 
        1.12         0.39        44.75        68.58        36.39        15.58 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5040 TCGA-43-3394 TCGA-43-3920 TCGA-43-5670 
       35.64        35.70        17.06        27.02        33.11        18.05 
TCGA-43-6770 TCGA-43-6771 TCGA-43-8115 TCGA-43-8116 TCGA-43-A474 TCGA-43-A475 
       10.19         5.46        13.38        11.77        11.61         9.73 
TCGA-43-A56V TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4081 
       12.03         9.99        10.65        13.91         0.39        29.95 
TCGA-52-7809 TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 TCGA-56-6545 TCGA-56-6546 
        5.46        30.35         8.75        27.45         2.04         0.62 
TCGA-56-7222 TCGA-56-7223 TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 TCGA-56-8504 
        0.43         0.99         0.85         0.20         0.03         5.85 
TCGA-56-8629 TCGA-56-A4BW TCGA-56-A4BX TCGA-56-A5DR TCGA-58-8387 TCGA-58-A46K 
        1.12         0.07         1.51         0.13        13.25        34.36 
TCGA-60-2695 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2708 
       21.11        10.22        96.82        37.94        92.71        80.45 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2719 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
       41.42         9.01        42.64        35.90        23.57        26.83 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2744 TCGA-66-2754 TCGA-66-2756 TCGA-66-2758 
       11.77        16.96         0.99         2.01         0.99        21.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2769 TCGA-66-2777 TCGA-66-2781 TCGA-66-2785 
        1.02         2.01         7.07         2.01         3.98         1.97 
TCGA-66-2787 TCGA-66-2793 TCGA-66-2794 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 
       40.01        10.06        54.08        49.05         2.73         6.64 
TCGA-68-8250 TCGA-68-8251 TCGA-68-A59I TCGA-68-A59J TCGA-77-6842 TCGA-77-7140 
        8.02         3.16         3.98         3.42        29.56        20.78 
TCGA-77-7141 TCGA-77-7142 TCGA-77-7337 TCGA-77-7463 TCGA-77-7465 TCGA-77-8009 
        0.49        42.28       106.95        46.78        15.75        53.95 
TCGA-77-8128 TCGA-77-8130 TCGA-77-8133 TCGA-77-8138 TCGA-77-8143 TCGA-77-8148 
       37.81        82.92        53.92        17.72        26.40         9.63 
TCGA-77-8156 TCGA-77-A5G3 TCGA-85-6560 TCGA-85-7696 TCGA-85-7697 TCGA-85-7699 
        0.33       117.57         0.36         0.59         0.33         0.03 
TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8276 
        1.97         0.85         1.97         0.53        16.77         0.43 
TCGA-85-8277 TCGA-85-8287 TCGA-85-8350 TCGA-85-8352 TCGA-85-8354 TCGA-85-8481 
        0.36         1.45         1.97         2.20         2.01         0.69 
TCGA-85-8664 TCGA-85-8666 TCGA-85-A4QR TCGA-85-A513 TCGA-85-A53L TCGA-90-7767 
        0.10        15.62         0.82         0.79         0.43         2.93 
TCGA-90-7769 TCGA-90-A4EE TCGA-92-7340 TCGA-92-7341 TCGA-92-8064 TCGA-94-7557 
       11.77        10.88         2.70         3.48         5.26         0.16 
TCGA-94-7943 TCGA-96-A4JK TCGA-J1-A4AH TCGA-L3-A524 TCGA-LA-A446 TCGA-MF-A522 
       11.70         8.98         7.30        14.76         1.18         2.73 
TCGA-NC-A5HG 
       50.89 

$`12P GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3411 TCGA-18-3414 
       12.16         4.47        81.01        79.46        46.52        13.02 
TCGA-18-3415 TCGA-18-3416 TCGA-18-3419 TCGA-18-4086 TCGA-18-5592 TCGA-18-5595 
       59.51        28.34         1.64         2.79         3.02        27.19 
TCGA-21-1075 TCGA-21-1076 TCGA-21-1078 TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 
       70.16        60.89        15.58       122.43         9.34       119.80 
TCGA-21-5783 TCGA-21-5784 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 
       88.11        41.69        19.99         7.33        14.93         4.31 
TCGA-22-1005 TCGA-22-1011 TCGA-22-1016 TCGA-22-4596 TCGA-22-4605 TCGA-22-4607 
       64.21         1.74        27.02         0.56        32.02        19.30 
TCGA-22-4609 TCGA-22-4613 TCGA-22-5472 TCGA-22-5474 TCGA-22-5478 TCGA-22-5479 
        9.57        11.77        64.93        14.63         0.79        54.28 
TCGA-22-5481 TCGA-22-5483 TCGA-22-5485 TCGA-22-5492 TCGA-22-A5C4 TCGA-33-4533 
       79.20        18.84        30.12        16.64         0.95       114.05 
TCGA-33-4547 TCGA-33-4587 TCGA-33-4589 TCGA-34-2600 TCGA-34-2604 TCGA-34-2608 
       43.10        54.44        10.82        61.61        31.50        32.88 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5927 TCGA-34-5929 TCGA-37-3783 
       67.79        56.38         9.07        30.94         4.96         3.95 
TCGA-37-3789 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 
        0.43         6.58         8.12         7.46         7.82         6.81 
TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5022 TCGA-39-5024 
        0.39         3.39        47.80        74.07        55.20        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5039 
       60.79         1.71        24.33         1.94        27.39        17.88 
TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 
       40.21        22.49        38.66        11.47        12.36        24.89 
TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8118 TCGA-43-A56U 
        3.81         6.97         7.76        66.51         2.93        14.20 
TCGA-51-4080 TCGA-52-7622 TCGA-56-1622 TCGA-56-5897 TCGA-56-5898 TCGA-56-7221 
        0.39        17.79        28.96         0.10        18.25         0.99 
TCGA-56-7579 TCGA-56-7580 TCGA-56-8503 TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 
        1.45         1.32         1.35         1.81         1.18         2.07 
TCGA-56-8626 TCGA-56-8628 TCGA-56-A49D TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A4ZK 
        0.56         0.53         1.25         0.99         0.82         0.13 
TCGA-56-A5DS TCGA-58-8386 TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 
        0.26         0.03        12.43        29.95        71.24        16.47 
TCGA-58-8393 TCGA-58-A46J TCGA-58-A46L TCGA-58-A46M TCGA-58-A46N TCGA-60-2696 
       34.78        64.87        36.59        23.24        17.75         3.58 
TCGA-60-2697 TCGA-60-2707 TCGA-60-2709 TCGA-60-2710 TCGA-60-2713 TCGA-60-2714 
       12.23        21.73        49.48        66.54        56.91        50.33 
TCGA-60-2715 TCGA-60-2716 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-66-2734 
       35.34        48.49         3.19        32.32        29.85        43.10 
TCGA-66-2737 TCGA-66-2742 TCGA-66-2753 TCGA-66-2755 TCGA-66-2757 TCGA-66-2759 
        2.01        21.07         1.02         0.92         0.99        25.05 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 
        0.99         2.01         2.01        23.01        19.00         3.02 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2782 TCGA-66-2783 TCGA-66-2786 TCGA-66-2788 
       19.00        12.03        12.00        24.95        25.97        22.98 
TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2795 TCGA-68-7757 
        4.04        22.98         5.03        30.02         4.01         6.94 
TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7335 
       73.12        75.09        23.28        11.18        89.98        70.13 
TCGA-77-7338 TCGA-77-8007 TCGA-77-8008 TCGA-77-8131 TCGA-77-8136 TCGA-77-8139 
        0.16         6.51        86.76        12.59        39.09       104.09 
TCGA-77-8140 TCGA-77-8144 TCGA-77-8145 TCGA-77-8150 TCGA-77-8153 TCGA-77-8154 
       11.54        27.39         6.97        54.41        55.36        35.90 
TCGA-77-A5FZ TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6175 TCGA-85-6561 TCGA-85-6798 
      126.18        30.81        23.44         9.67        12.99         1.12 
TCGA-85-7698 TCGA-85-7843 TCGA-85-7844 TCGA-85-8071 TCGA-85-8072 TCGA-85-8288 
        1.61         1.15         1.25        14.07        16.87         1.78 
TCGA-85-8351 TCGA-85-8353 TCGA-85-8355 TCGA-85-8479 TCGA-85-8580 TCGA-85-8582 
        1.81         1.78         2.01         0.72        14.63        13.94 
TCGA-85-A4CL TCGA-85-A50M TCGA-90-6837 TCGA-90-7766 TCGA-90-7964 TCGA-90-A4ED 
        0.49         0.62        24.92         9.50        14.07         8.02 
TCGA-92-8063 TCGA-92-8065 TCGA-94-7033 TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 
        4.01         2.30         2.86        39.88        44.19         6.21 
TCGA-96-8170 TCGA-96-A4JL TCGA-98-7454 TCGA-98-8020 TCGA-98-8021 TCGA-98-8022 
        6.94         6.02         8.42         2.76        13.58         7.36 
TCGA-98-8023 TCGA-L3-A4E7 TCGA-NC-A5HE TCGA-NC-A5HI 
       10.13         1.15        56.61        37.32 

  12P GAIN MUTATED 12P GAIN WILD-TYPE 
              0.03               0.03 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
            173.82             126.18 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
            13.120             14.005 
[1] "0.0 - 173.8 (13.1)" "0.0 - 126.2 (14.0)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56U 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-43-A56V         TCGA-46-3768         TCGA-46-6025 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-46-6026         TCGA-51-4079         TCGA-51-4080 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-51-4081         TCGA-52-7622         TCGA-52-7809 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-52-7810         TCGA-52-7811         TCGA-52-7812 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-5898 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-56-A49D         TCGA-56-A4BW         TCGA-56-A4BX 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-56-A4BY         TCGA-56-A4ZJ         TCGA-56-A4ZK 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-56-A5DR         TCGA-56-A5DS         TCGA-58-8386 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-68-A59I 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-68-A59J         TCGA-77-6842         TCGA-77-6843 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-77-8150         TCGA-77-8153         TCGA-77-8154 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5FZ         TCGA-77-A5G3 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-77-A5GB         TCGA-77-A5GH         TCGA-85-6175 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56U 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-43-A56V         TCGA-46-3768         TCGA-46-6025 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-46-6026         TCGA-51-4079         TCGA-51-4080 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-51-4081         TCGA-52-7622         TCGA-52-7809 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-52-7810         TCGA-52-7811         TCGA-52-7812 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-5898 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-56-A49D         TCGA-56-A4BW         TCGA-56-A4BX 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-56-A4BY         TCGA-56-A4ZJ         TCGA-56-A4ZK 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-56-A5DR         TCGA-56-A5DS         TCGA-58-8386 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-68-A59I 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-68-A59J         TCGA-77-6842         TCGA-77-6843 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-77-8150         TCGA-77-8153         TCGA-77-8154 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5FZ         TCGA-77-A5G3 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-77-A5GB         TCGA-77-A5GH         TCGA-85-6175 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56U 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-43-A56V         TCGA-46-3768         TCGA-46-6025 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-46-6026         TCGA-51-4079         TCGA-51-4080 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-51-4081         TCGA-52-7622         TCGA-52-7809 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-52-7810         TCGA-52-7811         TCGA-52-7812 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-5898 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-56-A49D         TCGA-56-A4BW         TCGA-56-A4BX 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-56-A4BY         TCGA-56-A4ZJ         TCGA-56-A4ZK 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-56-A5DR         TCGA-56-A5DS         TCGA-58-8386 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-68-A59I 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-68-A59J         TCGA-77-6842         TCGA-77-6843 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-77-8150         TCGA-77-8153         TCGA-77-8154 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5FZ         TCGA-77-A5G3 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-77-A5GB         TCGA-77-A5GH         TCGA-85-6175 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
[1] "hr=" "1"  
D23V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  12P GAIN MUTATED         1       24       57        1        27        34
  12P GAIN WILD-TYPE       0       45       79        0        23        36
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  12P GAIN MUTATED           31          8        1
  12P GAIN WILD-TYPE         23         12        4
D23V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  12P GAIN MUTATED    34 117  23  11
  12P GAIN WILD-TYPE  61 133  22   8
D23V4, multiclass
    clus
vv   12P GAIN MUTATED 12P GAIN WILD-TYPE
  T1               34                 61
  T2              117                133
  T3               23                 22
  T4               11                  8
                    vv
clus                  N0  N1  N2  N3
  12P GAIN MUTATED   110  54  18   1
  12P GAIN WILD-TYPE 145  55  16   4
D23V5, multiclass
    clus
vv   12P GAIN MUTATED 12P GAIN WILD-TYPE
  N0              110                145
  N1               54                 55
  N2               18                 16
  N3                1                  4
                    vv
clus                  M0  M1  MX
  12P GAIN MUTATED   158   1  23
  12P GAIN WILD-TYPE 191   4  26
D23V6, multiclass
    clus
vv   12P GAIN MUTATED 12P GAIN WILD-TYPE
  M0              158                191
  M1                1                  4
  MX               23                 26
D23V7, binary
                    cls
clus                   0   1
  12P GAIN MUTATED    34 151
  12P GAIN WILD-TYPE  70 154
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P GAIN MUTATED     34  151
  12P GAIN WILD-TYPE   70  154
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  FEMALE               34                 70
  MALE                151                154
D23V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  12P GAIN MUTATED                                       5
  12P GAIN WILD-TYPE                                     7
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  12P GAIN MUTATED                                        2
  12P GAIN WILD-TYPE                                      4
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  12P GAIN MUTATED                                         0
  12P GAIN WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  12P GAIN MUTATED                                                           178
  12P GAIN WILD-TYPE                                                         212
D23V9, multiclass
                                                             clus
vv                                                            12P GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      5
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     2
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              178
                                                             clus
vv                                                            12P GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                        7
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       4
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                212
D23V10, binary
                    cls
clus                   0   1
  12P GAIN MUTATED     7 178
  12P GAIN WILD-TYPE   6 218
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P GAIN MUTATED      7  178
  12P GAIN WILD-TYPE    6  218
     clus
vv    12P GAIN MUTATED 12P GAIN WILD-TYPE
  NO                 7                  6
  YES              178                218
D23V11, continuous
D23V12, continuous
                    vv
clus                  R0  R1  R2  RX
  12P GAIN MUTATED   146   4   2   8
  12P GAIN WILD-TYPE 186   4   2  10
D23V13, multiclass
    clus
vv   12P GAIN MUTATED 12P GAIN WILD-TYPE
  R0              146                186
  R1                4                  4
  R2                2                  2
  RX                8                 10

Clustering(24) Variable = 12Q GAIN MUTATION ANALYSIS
D24V1, survival
                    sevent
clus2                  0   1
  12Q GAIN MUTATED    72  48
  12Q GAIN WILD-TYPE 172  91
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
               120                263 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                48                 91 
$`12Q GAIN MUTATED`
TCGA-18-3410 TCGA-18-3412 TCGA-18-3417 TCGA-18-3421 TCGA-18-4083 TCGA-18-4721 
        4.80        11.34        24.92        43.76         6.15        90.54 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 TCGA-21-1077 TCGA-21-1083 TCGA-21-5786 
      119.54        46.88        99.16        34.78         8.78        33.93 
TCGA-21-5787 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 
       10.82        27.02        48.82        20.48        35.08        48.33 
TCGA-22-4601 TCGA-22-4604 TCGA-22-5471 TCGA-22-5473 TCGA-22-5480 TCGA-22-5482 
       34.75        13.12        31.73        63.55        71.34        11.74 
TCGA-22-5491 TCGA-33-4532 TCGA-33-4538 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 
       56.32         7.63        97.94       103.53       141.34        14.07 
TCGA-33-6737 TCGA-34-2596 TCGA-34-2605 TCGA-34-2609 TCGA-34-5231 TCGA-34-5239 
       19.76         2.63        28.96        31.27        50.24        23.24 
TCGA-34-7107 TCGA-37-3792 TCGA-37-4130 TCGA-37-5819 TCGA-39-5011 TCGA-39-5019 
        1.12         0.39         8.12         3.39        47.80        44.75 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-43-3394 TCGA-43-3920 TCGA-43-6771 
       15.58        35.64        35.70        27.02        33.11         5.46 
TCGA-43-8116 TCGA-43-A475 TCGA-46-3768 TCGA-46-6025 TCGA-51-4079 TCGA-52-7809 
       11.77         9.73         9.99        10.65         0.39         5.46 
TCGA-52-7812 TCGA-56-6546 TCGA-56-7582 TCGA-56-7822 TCGA-56-A4BX TCGA-56-A5DR 
       27.45         0.62         0.85         0.03         1.51         0.13 
TCGA-58-A46K TCGA-60-2695 TCGA-60-2698 TCGA-60-2704 TCGA-60-2706 TCGA-60-2708 
       34.36        21.11        10.22        37.94        92.71        80.45 
TCGA-60-2712 TCGA-60-2715 TCGA-60-2719 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 
        9.01        35.34        42.64        23.57        26.83        11.77 
TCGA-66-2754 TCGA-66-2756 TCGA-66-2766 TCGA-66-2767 TCGA-66-2781 TCGA-66-2787 
        2.01         0.99         1.02         2.01         3.98        40.01 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-8251 
       10.06        54.08        49.05         2.73         6.64         3.16 
TCGA-77-6842 TCGA-77-7140 TCGA-77-7142 TCGA-77-7465 TCGA-77-8009 TCGA-77-8128 
       29.56        20.78        42.28        15.75        53.95        37.81 
TCGA-77-8130 TCGA-77-8133 TCGA-77-8143 TCGA-77-8148 TCGA-77-8150 TCGA-77-8154 
       82.92        53.92        26.40         9.63        54.41        35.90 
TCGA-77-A5G3 TCGA-85-7950 TCGA-85-8052 TCGA-85-8070 TCGA-85-8276 TCGA-85-8277 
      117.57         1.97         0.53        16.77         0.43         0.36 
TCGA-85-8350 TCGA-85-8353 TCGA-85-8354 TCGA-85-8664 TCGA-85-A4QR TCGA-85-A513 
        1.97         1.78         2.01         0.10         0.82         0.79 
TCGA-90-7767 TCGA-90-7769 TCGA-90-A4EE TCGA-92-7340 TCGA-92-7341 TCGA-94-7557 
        2.93        11.77        10.88         2.70         3.48         0.16 
TCGA-94-7943 TCGA-98-8023 TCGA-J1-A4AH TCGA-L3-A524 TCGA-LA-A446 TCGA-NC-A5HG 
       11.70        10.13         7.30        14.76         1.18        50.89 

$`12Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3411 TCGA-18-3414 
       12.16         4.47        81.01        79.46        46.52        13.02 
TCGA-18-3415 TCGA-18-3416 TCGA-18-3419 TCGA-18-4086 TCGA-18-5592 TCGA-18-5595 
       59.51        28.34         1.64         2.79         3.02        27.19 
TCGA-21-1075 TCGA-21-1076 TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 
       70.16        60.89        15.58        31.73       122.43         9.34 
TCGA-21-1082 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-A5DI TCGA-22-0940 
      119.80        31.63        88.11        41.69        32.19        19.99 
TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 
        7.33        14.93         4.31        64.21         1.74        14.10 
TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 
       24.13         0.56        38.17        32.02        19.30         9.57 
TCGA-22-4613 TCGA-22-5472 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 
       11.77        64.93        14.63        44.25         0.79        54.28 
TCGA-22-5481 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5492 TCGA-22-A5C4 
       79.20        18.84        30.12        62.86        16.64         0.95 
TCGA-33-4533 TCGA-33-4547 TCGA-33-4566 TCGA-33-4587 TCGA-33-4589 TCGA-33-6738 
      114.05        43.10       173.82        54.44        10.82        27.02 
TCGA-34-2600 TCGA-34-2604 TCGA-34-2608 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       61.61        31.50        32.88        67.79        56.38         9.07 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
       12.00        14.07        30.94        18.15         4.96         3.95 
TCGA-37-3789 TCGA-37-4129 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        0.43         6.58         7.46         7.82         6.81         0.39 
TCGA-39-5016 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       74.07        68.58        55.20        70.03        60.79         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5039 TCGA-39-5040 
       24.33         1.94        27.39        36.39        17.88        17.06 
TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 
       40.21        22.49        38.66        11.47        18.05        12.36 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 
       24.89        10.19         3.81         6.97         7.76        66.51 
TCGA-43-8115 TCGA-43-8118 TCGA-43-A474 TCGA-43-A56U TCGA-43-A56V TCGA-46-6026 
       13.38         2.93        11.61        14.20        12.03        13.91 
TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7810 TCGA-52-7811 TCGA-56-1622 
        0.39        29.95        17.79        30.35         8.75        28.96 
TCGA-56-5897 TCGA-56-5898 TCGA-56-6545 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 
        0.10        18.25         2.04         0.99         0.43         0.99 
TCGA-56-7579 TCGA-56-7580 TCGA-56-7730 TCGA-56-8503 TCGA-56-8504 TCGA-56-8622 
        1.45         1.32         0.20         1.35         5.85         1.81 
TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 TCGA-56-A49D 
        1.18         2.07         0.56         0.53         1.12         1.25 
TCGA-56-A4BW TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DS TCGA-58-8386 
        0.07         0.99         0.82         0.13         0.26         0.03 
TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 TCGA-58-8393 
       13.25        12.43        29.95        71.24        16.47        34.78 
TCGA-58-A46J TCGA-58-A46L TCGA-58-A46M TCGA-58-A46N TCGA-60-2696 TCGA-60-2697 
       64.87        36.59        23.24        17.75         3.58        12.23 
TCGA-60-2703 TCGA-60-2707 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2713 
       96.82        21.73        49.48        66.54        41.42        56.91 
TCGA-60-2714 TCGA-60-2716 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
       50.33        48.49         3.19        32.32        29.85        35.90 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 
       16.96        43.10         2.01        21.07         0.99         1.02 
TCGA-66-2755 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        0.92         0.99        21.01        25.05         0.99         2.01 
TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         7.07        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       19.00        12.03        12.00        24.95         1.97        25.97 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2795 
       22.98         4.04        22.98         5.03        30.02         4.01 
TCGA-68-7757 TCGA-68-8250 TCGA-68-A59I TCGA-68-A59J TCGA-77-6843 TCGA-77-6844 
        6.94         8.02         3.98         3.42        73.12        75.09 
TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7141 TCGA-77-7335 TCGA-77-7337 
       23.28        11.18        89.98         0.49        70.13       106.95 
TCGA-77-7338 TCGA-77-7463 TCGA-77-8007 TCGA-77-8008 TCGA-77-8131 TCGA-77-8136 
        0.16        46.78         6.51        86.76        12.59        39.09 
TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8144 TCGA-77-8145 TCGA-77-8153 
       17.72       104.09        11.54        27.39         6.97        55.36 
TCGA-77-8156 TCGA-77-A5FZ TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6175 TCGA-85-6560 
        0.33       126.18        30.81        23.44         9.67         0.36 
TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 
       12.99         1.12         0.59         0.33         1.61         0.03 
TCGA-85-7843 TCGA-85-7844 TCGA-85-8048 TCGA-85-8049 TCGA-85-8071 TCGA-85-8072 
        1.15         1.25         0.85         1.97        14.07        16.87 
TCGA-85-8287 TCGA-85-8288 TCGA-85-8351 TCGA-85-8352 TCGA-85-8355 TCGA-85-8479 
        1.45         1.78         1.81         2.20         2.01         0.72 
TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 TCGA-85-8666 TCGA-85-A4CL TCGA-85-A50M 
        0.69        14.63        13.94        15.62         0.49         0.62 
TCGA-85-A53L TCGA-90-6837 TCGA-90-7766 TCGA-90-7964 TCGA-90-A4ED TCGA-92-8063 
        0.43        24.92         9.50        14.07         8.02         4.01 
TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 
        5.26         2.30         2.86        39.88        44.19         6.21 
TCGA-96-8170 TCGA-96-A4JK TCGA-96-A4JL TCGA-98-7454 TCGA-98-8020 TCGA-98-8021 
        6.94         8.98         6.02         8.42         2.76        13.58 
TCGA-98-8022 TCGA-L3-A4E7 TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HI 
        7.36         1.15         2.73        56.61        37.32 

  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
              0.03               0.03 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
            141.34             173.82 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
             15.17              13.02 
[1] "0.0 - 141.3 (15.2)" "0.0 - 173.8 (13.0)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
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  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
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  "12Q GAIN MUTATED"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
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"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
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"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
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"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
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"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56U 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-43-A56V         TCGA-46-3768         TCGA-46-6025 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-46-6026         TCGA-51-4079         TCGA-51-4080 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-51-4081         TCGA-52-7622         TCGA-52-7809 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-52-7810         TCGA-52-7811         TCGA-52-7812 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-5898 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
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        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
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        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
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        TCGA-56-A49D         TCGA-56-A4BW         TCGA-56-A4BX 
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        TCGA-56-A4BY         TCGA-56-A4ZJ         TCGA-56-A4ZK 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-56-A5DR         TCGA-56-A5DS         TCGA-58-8386 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
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        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
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        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
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        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-68-A59I 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-68-A59J         TCGA-77-6842         TCGA-77-6843 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-77-8150         TCGA-77-8153         TCGA-77-8154 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-77-8156         TCGA-77-A5FZ         TCGA-77-A5G3 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-77-A5GB         TCGA-77-A5GH         TCGA-85-6175 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
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  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
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  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
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  "12Q GAIN MUTATED"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
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  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
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        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56U 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-43-A56V         TCGA-46-3768         TCGA-46-6025 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-46-6026         TCGA-51-4079         TCGA-51-4080 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-51-4081         TCGA-52-7622         TCGA-52-7809 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-52-7810         TCGA-52-7811         TCGA-52-7812 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-5898 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-56-A49D         TCGA-56-A4BW         TCGA-56-A4BX 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-56-A4BY         TCGA-56-A4ZJ         TCGA-56-A4ZK 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-56-A5DR         TCGA-56-A5DS         TCGA-58-8386 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-68-A59I 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-68-A59J         TCGA-77-6842         TCGA-77-6843 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-77-8150         TCGA-77-8153         TCGA-77-8154 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-77-8156         TCGA-77-A5FZ         TCGA-77-A5G3 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-77-A5GB         TCGA-77-A5GH         TCGA-85-6175 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
[1] "hr=" "1"  
D24V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  12Q GAIN MUTATED         0       20       33        1        16        23
  12Q GAIN WILD-TYPE       1       49      103        0        34        47
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  12Q GAIN MUTATED           25          7        1
  12Q GAIN WILD-TYPE         29         13        4
D24V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  12Q GAIN MUTATED    27  74  16   9
  12Q GAIN WILD-TYPE  68 176  29  10
D24V4, multiclass
    clus
vv   12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  T1               27                 68
  T2               74                176
  T3               16                 29
  T4                9                 10
                    vv
clus                  N0  N1  N2  N3
  12Q GAIN MUTATED    67  41  15   1
  12Q GAIN WILD-TYPE 188  68  19   4
D24V5, multiclass
    clus
vv   12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  N0               67                188
  N1               41                 68
  N2               15                 19
  N3                1                  4
                    vv
clus                  M0  M1  MX
  12Q GAIN MUTATED   111   1  13
  12Q GAIN WILD-TYPE 238   4  36
D24V6, multiclass
    clus
vv   12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  M0              111                238
  M1                1                  4
  MX               13                 36
D24V7, binary
                    cls
clus                   0   1
  12Q GAIN MUTATED    20 106
  12Q GAIN WILD-TYPE  84 199
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q GAIN MUTATED     20  106
  12Q GAIN WILD-TYPE   84  199
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  FEMALE               20                 84
  MALE                106                199
D24V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  12Q GAIN MUTATED                                       4
  12Q GAIN WILD-TYPE                                     8
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  12Q GAIN MUTATED                                        1
  12Q GAIN WILD-TYPE                                      5
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  12Q GAIN MUTATED                                         0
  12Q GAIN WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  12Q GAIN MUTATED                                                           121
  12Q GAIN WILD-TYPE                                                         269
D24V9, multiclass
                                                             clus
vv                                                            12Q GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      4
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              121
                                                             clus
vv                                                            12Q GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                        8
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                269
D24V10, binary
                    cls
clus                   0   1
  12Q GAIN MUTATED     4 122
  12Q GAIN WILD-TYPE   9 274
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q GAIN MUTATED      4  122
  12Q GAIN WILD-TYPE    9  274
     clus
vv    12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  NO                 4                  9
  YES              122                274
D24V11, continuous
D24V12, continuous
                    vv
clus                  R0  R1  R2  RX
  12Q GAIN MUTATED   103   3   1   6
  12Q GAIN WILD-TYPE 229   5   3  12
D24V13, multiclass
    clus
vv   12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  R0              103                229
  R1                3                  5
  R2                1                  3
  RX                6                 12

Clustering(25) Variable = 13Q GAIN MUTATION ANALYSIS
D25V1, survival
                    sevent
clus2                  0   1
  13Q GAIN MUTATED    20   9
  13Q GAIN WILD-TYPE 224 130
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                29                354 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                 9                130 
$`13Q GAIN MUTATED`
TCGA-18-3407 TCGA-18-3412 TCGA-21-1079 TCGA-21-1081 TCGA-21-1082 TCGA-22-4599 
        4.47        11.34        31.73         9.34       119.80        38.17 
TCGA-33-4533 TCGA-37-4130 TCGA-39-5034 TCGA-39-5035 TCGA-43-2576 TCGA-43-7657 
      114.05         8.12        36.39        15.58        40.21         7.76 
TCGA-43-A56V TCGA-51-4081 TCGA-52-7810 TCGA-56-5897 TCGA-56-5898 TCGA-56-7223 
       12.03        29.95        30.35         0.10        18.25         0.99 
TCGA-56-7822 TCGA-56-A4BX TCGA-60-2698 TCGA-66-2737 TCGA-66-2791 TCGA-77-8133 
        0.03         1.51        10.22         2.01         5.03        53.92 
TCGA-85-7696 TCGA-85-7843 TCGA-85-A50M TCGA-94-7943 TCGA-MF-A522 
        0.59         1.15         0.62        11.70         2.73 

$`13Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 TCGA-18-3414 
       12.16        81.01        79.46         4.80        46.52        13.02 
TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 
       59.51        28.34        24.92         1.64        43.76         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.54         3.02        27.19       119.54        46.88 
TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1080 
       99.16        70.16        60.89        34.78        15.58       122.43 
TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 
        8.78        31.63        88.11        41.69        33.93        10.82 
TCGA-21-A5DI TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 
       32.19        19.99         7.33        14.93         4.31        64.21 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 
        1.74        14.10        27.02        48.82        20.48        35.08 
TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 
       48.33        24.13         0.56        34.75        13.12        32.02 
TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       19.30         9.57        11.77        31.73        64.93        63.55 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 
       14.63        44.25         0.79        54.28        71.34        79.20 
TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 
       11.74        18.84        30.12        62.86        56.32        16.64 
TCGA-22-A5C4 TCGA-33-4532 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 
        0.95         7.63        97.94        43.10       173.82       103.53 
TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 
      141.34        14.07        54.44        10.82        19.76        27.02 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 
        2.63        61.61        31.50        28.96        32.88        31.27 
TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 
       50.24        67.79        56.38         9.07        23.24        12.00 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 
       14.07        30.94        18.15         4.96         1.12         3.95 
TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 
        0.43         0.39         6.58         7.46         7.82         6.81 
TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 
        0.39         3.39        47.80        74.07        44.75        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
       55.20        70.03        60.79         1.71        24.33         1.94 
TCGA-39-5031 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-39-5040 TCGA-43-2578 
       27.39        35.64        35.70        17.88        17.06        22.49 
TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 
       38.66        27.02        33.11        11.47        18.05        12.36 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7658 
       24.89        10.19         5.46         3.81         6.97        66.51 
TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 TCGA-43-A474 TCGA-43-A475 TCGA-43-A56U 
       13.38        11.77         2.93        11.61         9.73        14.20 
TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-52-7622 
        9.99        10.65        13.91         0.39         0.39        17.79 
TCGA-52-7809 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-6545 TCGA-56-6546 
        5.46         8.75        27.45        28.96         2.04         0.62 
TCGA-56-7221 TCGA-56-7222 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 
        0.99         0.43         1.45         1.32         0.85         0.20 
TCGA-56-8503 TCGA-56-8504 TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 
        1.35         5.85         1.81         1.18         2.07         0.56 
TCGA-56-8628 TCGA-56-8629 TCGA-56-A49D TCGA-56-A4BW TCGA-56-A4BY TCGA-56-A4ZJ 
        0.53         1.12         1.25         0.07         0.99         0.82 
TCGA-56-A4ZK TCGA-56-A5DR TCGA-56-A5DS TCGA-58-8386 TCGA-58-8387 TCGA-58-8388 
        0.13         0.13         0.26         0.03        13.25        12.43 
TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 TCGA-58-8393 TCGA-58-A46J TCGA-58-A46K 
       29.95        71.24        16.47        34.78        64.87        34.36 
TCGA-58-A46L TCGA-58-A46M TCGA-58-A46N TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 
       36.59        23.24        17.75        21.11         3.58        12.23 
TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
       96.82        37.94        92.71        21.73        80.45        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 
       66.54        41.42         9.01        56.91        50.33        35.34 
TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
       48.49        42.64         3.19        32.32        29.85        35.90 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 
       23.57        26.83        11.77        16.96        43.10        21.07 
TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 
        0.99         1.02         2.01         0.92         0.99         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 
       21.01        25.05         0.99         2.01         1.02         2.01 
TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         7.07        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
       19.00        12.03         3.98        12.00        24.95         1.97 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2792 
       25.97        40.01        22.98         4.04        22.98        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 
       10.06        54.08         4.01        49.05         2.73         6.64 
TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 TCGA-68-A59I TCGA-68-A59J TCGA-77-6842 
        6.94         8.02         3.16         3.98         3.42        29.56 
TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 
       73.12        75.09        23.28        11.18        89.98        20.78 
TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 
        0.49        42.28        70.13       106.95         0.16        46.78 
TCGA-77-7465 TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 TCGA-77-8128 TCGA-77-8130 
       15.75         6.51        86.76        53.95        37.81        82.92 
TCGA-77-8131 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 
       12.59        39.09        17.72       104.09        11.54        26.40 
TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-77-8153 TCGA-77-8154 
       27.39         6.97         9.63        54.41        55.36        35.90 
TCGA-77-8156 TCGA-77-A5FZ TCGA-77-A5G3 TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6175 
        0.33       126.18       117.57        30.81        23.44         9.67 
TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 
        0.36        12.99         1.12         0.33         1.61         0.03 
TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 
        1.25         1.97         0.85         1.97         0.53        16.77 
TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 TCGA-85-8288 
       14.07        16.87         0.43         0.36         1.45         1.78 
TCGA-85-8350 TCGA-85-8351 TCGA-85-8352 TCGA-85-8353 TCGA-85-8354 TCGA-85-8355 
        1.97         1.81         2.20         1.78         2.01         2.01 
TCGA-85-8479 TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 TCGA-85-8666 
        0.72         0.69        14.63        13.94         0.10        15.62 
TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 TCGA-90-7766 
        0.49         0.82         0.79         0.43        24.92         9.50 
TCGA-90-7767 TCGA-90-7769 TCGA-90-7964 TCGA-90-A4ED TCGA-90-A4EE TCGA-92-7340 
        2.93        11.77        14.07         8.02        10.88         2.70 
TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 
        3.48         4.01         5.26         2.30         2.86         0.16 
TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 TCGA-96-A4JK TCGA-96-A4JL 
       39.88        44.19         6.21         6.94         8.98         6.02 
TCGA-98-7454 TCGA-98-8020 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 TCGA-J1-A4AH 
        8.42         2.76        13.58         7.36        10.13         7.30 
TCGA-L3-A4E7 TCGA-L3-A524 TCGA-LA-A446 TCGA-NC-A5HE TCGA-NC-A5HG TCGA-NC-A5HI 
        1.15        14.76         1.18        56.61        50.89        37.32 

  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
              0.03               0.03 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
            119.80             173.82 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
            10.220             14.005 
[1] "0.0 - 119.8 (10.2)" "0.0 - 173.8 (14.0)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
  "13Q GAIN MUTATED"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
  "13Q GAIN MUTATED"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
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  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
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  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
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  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
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"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-68-A59I 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-68-A59J         TCGA-77-6842         TCGA-77-6843 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8153         TCGA-77-8154 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5FZ         TCGA-77-A5G3 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-77-A5GB         TCGA-77-A5GH         TCGA-85-6175 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
[1] "hr=" "1"  
D25V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  13Q GAIN MUTATED         0        5        8        0         6         7
  13Q GAIN WILD-TYPE       1       64      128        1        44        63
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  13Q GAIN MUTATED            4          1        0
  13Q GAIN WILD-TYPE         50         19        5
D25V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  13Q GAIN MUTATED     8  18   5   0
  13Q GAIN WILD-TYPE  87 232  40  19
D25V4, multiclass
    clus
vv   13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  T1                8                 87
  T2               18                232
  T3                5                 40
  T4                0                 19
                    vv
clus                  N0  N1  N2  N3
  13Q GAIN MUTATED    19   8   2   1
  13Q GAIN WILD-TYPE 236 101  32   4
D25V5, multiclass
    clus
vv   13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  N0               19                236
  N1                8                101
  N2                2                 32
  N3                1                  4
                    vv
clus                  M0  M1  MX
  13Q GAIN MUTATED    25   0   6
  13Q GAIN WILD-TYPE 324   5  43
D25V6, multiclass
    clus
vv   13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  M0               25                324
  M1                0                  5
  MX                6                 43
D25V7, binary
                    cls
clus                   0   1
  13Q GAIN MUTATED     7  24
  13Q GAIN WILD-TYPE  97 281
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q GAIN MUTATED      7   24
  13Q GAIN WILD-TYPE   97  281
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  FEMALE                7                 97
  MALE                 24                281
D25V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  13Q GAIN MUTATED                                       0
  13Q GAIN WILD-TYPE                                    12
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  13Q GAIN MUTATED                                        1
  13Q GAIN WILD-TYPE                                      5
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  13Q GAIN MUTATED                                         0
  13Q GAIN WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  13Q GAIN MUTATED                                                            30
  13Q GAIN WILD-TYPE                                                         360
D25V9, multiclass
                                                             clus
vv                                                            13Q GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      0
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               30
                                                             clus
vv                                                            13Q GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       12
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                360
D25V10, binary
                    cls
clus                   0   1
  13Q GAIN MUTATED     1  30
  13Q GAIN WILD-TYPE  12 366
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q GAIN MUTATED      1   30
  13Q GAIN WILD-TYPE   12  366
     clus
vv    13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  NO                 1                 12
  YES               30                366
D25V11, continuous
D25V12, continuous
                    vv
clus                  R0  R1  R2  RX
  13Q GAIN MUTATED    23   1   0   2
  13Q GAIN WILD-TYPE 309   7   4  16
D25V13, multiclass
    clus
vv   13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  R0               23                309
  R1                1                  7
  R2                0                  4
  RX                2                 16

Clustering(26) Variable = 14Q GAIN MUTATION ANALYSIS
D26V1, survival
                    sevent
clus2                  0   1
  14Q GAIN MUTATED    66  29
  14Q GAIN WILD-TYPE 178 110
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                95                288 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                29                110 
$`14Q GAIN MUTATED`
TCGA-18-3408 TCGA-18-3411 TCGA-18-3412 TCGA-18-3415 TCGA-18-3421 TCGA-18-5592 
       81.01        46.52        11.34        59.51        43.76         3.02 
TCGA-21-1076 TCGA-21-1079 TCGA-21-1082 TCGA-21-5786 TCGA-22-4591 TCGA-22-4593 
       60.89        31.73       119.80        33.93        20.48        35.08 
TCGA-22-4595 TCGA-22-5471 TCGA-22-A5C4 TCGA-33-4532 TCGA-33-4533 TCGA-33-4566 
       24.13        31.73         0.95         7.63       114.05       173.82 
TCGA-33-4582 TCGA-33-4589 TCGA-33-6737 TCGA-37-3792 TCGA-37-5819 TCGA-39-5011 
      103.53        10.82        19.76         0.39         3.39        47.80 
TCGA-39-5029 TCGA-39-5031 TCGA-39-5037 TCGA-43-2578 TCGA-43-6143 TCGA-43-6771 
       24.33        27.39        35.70        22.49        12.36         5.46 
TCGA-43-8118 TCGA-43-A56V TCGA-46-6025 TCGA-51-4081 TCGA-52-7622 TCGA-52-7811 
        2.93        12.03        10.65        29.95        17.79         8.75 
TCGA-56-1622 TCGA-56-5898 TCGA-56-6545 TCGA-56-6546 TCGA-56-7580 TCGA-56-7730 
       28.96        18.25         2.04         0.62         1.32         0.20 
TCGA-56-8504 TCGA-56-8624 TCGA-56-8629 TCGA-56-A49D TCGA-56-A4ZK TCGA-58-8393 
        5.85         1.18         1.12         1.25         0.13        34.78 
TCGA-58-A46M TCGA-58-A46N TCGA-60-2698 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 
       23.24        17.75        10.22        92.71        21.73        80.45 
TCGA-60-2719 TCGA-60-2722 TCGA-60-2724 TCGA-66-2744 TCGA-66-2756 TCGA-66-2763 
       42.64        29.85        23.57         0.99         0.99         0.99 
TCGA-66-2765 TCGA-66-2771 TCGA-66-2782 TCGA-66-2788 TCGA-66-2792 TCGA-66-2793 
        2.01        19.00        12.00        22.98        30.02        10.06 
TCGA-66-2800 TCGA-68-7755 TCGA-77-6845 TCGA-77-7138 TCGA-77-7142 TCGA-77-7337 
       49.05         2.73        23.28        11.18        42.28       106.95 
TCGA-77-7463 TCGA-77-8007 TCGA-77-8130 TCGA-77-8136 TCGA-77-8139 TCGA-77-8143 
       46.78         6.51        82.92        39.09       104.09        26.40 
TCGA-77-8150 TCGA-77-8153 TCGA-77-A5G3 TCGA-85-6175 TCGA-85-6561 TCGA-85-7698 
       54.41        55.36       117.57         9.67        12.99         1.61 
TCGA-85-8353 TCGA-85-8355 TCGA-85-A50M TCGA-92-7340 TCGA-92-7341 TCGA-96-A4JK 
        1.78         2.01         0.62         2.70         3.48         8.98 
TCGA-98-8020 TCGA-L3-A4E7 TCGA-L3-A524 TCGA-NC-A5HG TCGA-NC-A5HI 
        2.76         1.15        14.76        50.89        37.32 

$`14Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3409 TCGA-18-3410 TCGA-18-3414 TCGA-18-3416 
       12.16         4.47        79.46         4.80        13.02        28.34 
TCGA-18-3417 TCGA-18-3419 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5595 
       24.92         1.64         6.15         2.79        90.54        27.19 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1077 TCGA-21-1078 
      119.54        46.88        99.16        70.16        34.78        15.58 
TCGA-21-1080 TCGA-21-1081 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 
      122.43         9.34         8.78        31.63        88.11        41.69 
TCGA-21-5787 TCGA-21-A5DI TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 
       10.82        32.19        19.99         7.33        14.93         4.31 
TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4594 
       64.21         1.74        14.10        27.02        48.82        48.33 
TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 
        0.56        38.17        34.75        13.12        32.02        19.30 
TCGA-22-4609 TCGA-22-4613 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 
        9.57        11.77        64.93        63.55        14.63        44.25 
TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 
        0.79        54.28        71.34        79.20        11.74        18.84 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4538 TCGA-33-4547 
       30.12        62.86        56.32        16.64        97.94        43.10 
TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 
      141.34        14.07        54.44        27.02         2.63        61.61 
TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 
       31.50        28.96        32.88        31.27        50.24        67.79 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 
       56.38         9.07        23.24        12.00        14.07        30.94 
TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-4129 
       18.15         4.96         1.12         3.95         0.43         6.58 
TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-39-5016 
        8.12         7.46         7.82         6.81         0.39        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.75        68.58        55.20        70.03        60.79         1.71 
TCGA-39-5030 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5039 TCGA-39-5040 
        1.94        36.39        15.58        35.64        17.88        17.06 
TCGA-43-2576 TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 
       40.21        38.66        27.02        33.11        11.47        18.05 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 
       24.89        10.19         3.81         6.97         7.76        66.51 
TCGA-43-8115 TCGA-43-8116 TCGA-43-A474 TCGA-43-A475 TCGA-43-A56U TCGA-46-3768 
       13.38        11.77        11.61         9.73        14.20         9.99 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-52-7809 TCGA-52-7810 TCGA-52-7812 
       13.91         0.39         0.39         5.46        30.35        27.45 
TCGA-56-5897 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7582 
        0.10         0.99         0.43         0.99         1.45         0.85 
TCGA-56-7822 TCGA-56-8503 TCGA-56-8622 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 
        0.03         1.35         1.81         2.07         0.56         0.53 
TCGA-56-A4BW TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A5DR TCGA-56-A5DS 
        0.07         1.51         0.99         0.82         0.13         0.26 
TCGA-58-8386 TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 
        0.03        13.25        12.43        29.95        71.24        16.47 
TCGA-58-A46J TCGA-58-A46K TCGA-58-A46L TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 
       64.87        34.36        36.59        21.11         3.58        12.23 
TCGA-60-2703 TCGA-60-2704 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       96.82        37.94        49.48        66.54        41.42         9.01 
TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2720 TCGA-60-2721 
       56.91        50.33        35.34        48.49         3.19        32.32 
TCGA-60-2723 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 
       35.90        26.83        11.77        16.96        43.10         2.01 
TCGA-66-2742 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2757 TCGA-66-2758 
       21.07         1.02         2.01         0.92         0.99        21.01 
TCGA-66-2759 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 
       25.05         1.02         2.01         2.01         7.07        23.01 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2783 
        3.02         2.01        19.00        12.03         3.98        24.95 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 
        1.97        25.97        40.01         4.04        22.98         5.03 
TCGA-66-2794 TCGA-66-2795 TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 
       54.08         4.01         6.64         6.94         8.02         3.16 
TCGA-68-A59I TCGA-68-A59J TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-7139 
        3.98         3.42        29.56        73.12        75.09        89.98 
TCGA-77-7140 TCGA-77-7141 TCGA-77-7335 TCGA-77-7338 TCGA-77-7465 TCGA-77-8008 
       20.78         0.49        70.13         0.16        15.75        86.76 
TCGA-77-8009 TCGA-77-8128 TCGA-77-8131 TCGA-77-8133 TCGA-77-8138 TCGA-77-8140 
       53.95        37.81        12.59        53.92        17.72        11.54 
TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8154 TCGA-77-8156 TCGA-77-A5FZ 
       27.39         6.97         9.63        35.90         0.33       126.18 
TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6560 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 
       30.81        23.44         0.36         1.12         0.59         0.33 
TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 
        0.03         1.15         1.25         1.97         0.85         1.97 
TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 
        0.53        16.77        14.07        16.87         0.43         0.36 
TCGA-85-8287 TCGA-85-8288 TCGA-85-8350 TCGA-85-8351 TCGA-85-8352 TCGA-85-8354 
        1.45         1.78         1.97         1.81         2.20         2.01 
TCGA-85-8479 TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 TCGA-85-8666 
        0.72         0.69        14.63        13.94         0.10        15.62 
TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 TCGA-90-7766 
        0.49         0.82         0.79         0.43        24.92         9.50 
TCGA-90-7767 TCGA-90-7769 TCGA-90-7964 TCGA-90-A4ED TCGA-90-A4EE TCGA-92-8063 
        2.93        11.77        14.07         8.02        10.88         4.01 
TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 
        5.26         2.30         2.86         0.16        11.70        39.88 
TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 TCGA-96-A4JL TCGA-98-7454 TCGA-98-8021 
       44.19         6.21         6.94         6.02         8.42        13.58 
TCGA-98-8022 TCGA-98-8023 TCGA-J1-A4AH TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE 
        7.36        10.13         7.30         1.18         2.73        56.61 

  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
              0.13               0.03 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
            173.82             141.34 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
             19.00              12.51 
[1] "0.1 - 173.8 (19.0)" "0.0 - 141.3 (12.5)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56U 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-43-A56V         TCGA-46-3768         TCGA-46-6025 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-46-6026         TCGA-51-4079         TCGA-51-4080 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-51-4081         TCGA-52-7622         TCGA-52-7809 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-52-7810         TCGA-52-7811         TCGA-52-7812 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-5898 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-56-A49D         TCGA-56-A4BW         TCGA-56-A4BX 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-56-A4BY         TCGA-56-A4ZJ         TCGA-56-A4ZK 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-56-A5DR         TCGA-56-A5DS         TCGA-58-8386 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-68-A59I 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-68-A59J         TCGA-77-6842         TCGA-77-6843 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8153         TCGA-77-8154 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5FZ         TCGA-77-A5G3 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-77-A5GB         TCGA-77-A5GH         TCGA-85-6175 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
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"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
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"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
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  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
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  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
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  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
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  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
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  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56U 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-43-A56V         TCGA-46-3768         TCGA-46-6025 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-46-6026         TCGA-51-4079         TCGA-51-4080 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-51-4081         TCGA-52-7622         TCGA-52-7809 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-52-7810         TCGA-52-7811         TCGA-52-7812 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-5898 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-56-A49D         TCGA-56-A4BW         TCGA-56-A4BX 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-56-A4BY         TCGA-56-A4ZJ         TCGA-56-A4ZK 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-56-A5DR         TCGA-56-A5DS         TCGA-58-8386 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-68-A59I 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-68-A59J         TCGA-77-6842         TCGA-77-6843 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8153         TCGA-77-8154 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5FZ         TCGA-77-A5G3 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-77-A5GB         TCGA-77-A5GH         TCGA-85-6175 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
[1] "hr=" "1.6"
D26V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  14Q GAIN MUTATED         0       11       37        0        11        23
  14Q GAIN WILD-TYPE       1       58       99        1        39        47
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  14Q GAIN MUTATED           17          3        0
  14Q GAIN WILD-TYPE         37         17        5
D26V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  14Q GAIN MUTATED    16  66  17   3
  14Q GAIN WILD-TYPE  79 184  28  16
D26V4, multiclass
    clus
vv   14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  T1               16                 79
  T2               66                184
  T3               17                 28
  T4                3                 16
                    vv
clus                  N0  N1  N2  N3
  14Q GAIN MUTATED    65  25  11   0
  14Q GAIN WILD-TYPE 190  84  23   5
D26V5, multiclass
    clus
vv   14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  N0               65                190
  N1               25                 84
  N2               11                 23
  N3                0                  5
                    vv
clus                  M0  M1  MX
  14Q GAIN MUTATED    93   0   8
  14Q GAIN WILD-TYPE 256   5  41
D26V6, multiclass
    clus
vv   14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  M0               93                256
  M1                0                  5
  MX                8                 41
D26V7, binary
                    cls
clus                   0   1
  14Q GAIN MUTATED    26  76
  14Q GAIN WILD-TYPE  78 229
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q GAIN MUTATED     26   76
  14Q GAIN WILD-TYPE   78  229
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  FEMALE               26                 78
  MALE                 76                229
D26V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  14Q GAIN MUTATED                                       3
  14Q GAIN WILD-TYPE                                     9
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  14Q GAIN MUTATED                                        1
  14Q GAIN WILD-TYPE                                      5
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  14Q GAIN MUTATED                                         0
  14Q GAIN WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  14Q GAIN MUTATED                                                            98
  14Q GAIN WILD-TYPE                                                         292
D26V9, multiclass
                                                             clus
vv                                                            14Q GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      3
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               98
                                                             clus
vv                                                            14Q GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                        9
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                292
D26V10, binary
                    cls
clus                   0   1
  14Q GAIN MUTATED     3  99
  14Q GAIN WILD-TYPE  10 297
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q GAIN MUTATED      3   99
  14Q GAIN WILD-TYPE   10  297
     clus
vv    14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  NO                 3                 10
  YES               99                297
D26V11, continuous
D26V12, continuous
                    vv
clus                  R0  R1  R2  RX
  14Q GAIN MUTATED    85   2   1   6
  14Q GAIN WILD-TYPE 247   6   3  12
D26V13, multiclass
    clus
vv   14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  R0               85                247
  R1                2                  6
  R2                1                  3
  RX                6                 12

Clustering(27) Variable = 15Q GAIN MUTATION ANALYSIS
D27V1, survival
                    sevent
clus2                  0   1
  15Q GAIN MUTATED    52  30
  15Q GAIN WILD-TYPE 192 109
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                82                301 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                30                109 
$`15Q GAIN MUTATED`
TCGA-18-3410 TCGA-18-3414 TCGA-18-3417 TCGA-18-3421 TCGA-18-4083 TCGA-21-1077 
        4.80        13.02        24.92        43.76         6.15        34.78 
TCGA-21-1079 TCGA-21-1082 TCGA-21-5786 TCGA-22-4593 TCGA-22-4604 TCGA-22-4605 
       31.73       119.80        33.93        35.08        13.12        32.02 
TCGA-22-5472 TCGA-22-5474 TCGA-22-5482 TCGA-22-5483 TCGA-33-4538 TCGA-33-4566 
       64.93        14.63        11.74        18.84        97.94       173.82 
TCGA-33-4583 TCGA-34-2596 TCGA-34-2605 TCGA-34-2609 TCGA-34-5231 TCGA-34-5240 
      141.34         2.63        28.96        31.27        50.24        12.00 
TCGA-37-3792 TCGA-39-5037 TCGA-43-3394 TCGA-43-6770 TCGA-43-A475 TCGA-56-7222 
        0.39        35.70        27.02        10.19         9.73         0.43 
TCGA-56-7579 TCGA-56-7582 TCGA-56-A5DR TCGA-58-8391 TCGA-58-8393 TCGA-58-A46K 
        1.45         0.85         0.13        71.24        34.78        34.36 
TCGA-60-2695 TCGA-60-2696 TCGA-60-2706 TCGA-60-2710 TCGA-60-2711 TCGA-60-2719 
       21.11         3.58        92.71        66.54        41.42        42.64 
TCGA-60-2722 TCGA-60-2724 TCGA-60-2725 TCGA-66-2734 TCGA-66-2754 TCGA-66-2767 
       29.85        23.57        26.83        43.10         2.01         2.01 
TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-68-7755 TCGA-77-7140 
        7.07        23.01        19.00         3.02         2.73        20.78 
TCGA-77-7141 TCGA-77-7463 TCGA-77-7465 TCGA-77-8133 TCGA-77-8136 TCGA-77-8150 
        0.49        46.78        15.75        53.92        39.09        54.41 
TCGA-85-6561 TCGA-85-6798 TCGA-85-7844 TCGA-85-7950 TCGA-85-8049 TCGA-85-8052 
       12.99         1.12         1.25         1.97         1.97         0.53 
TCGA-85-8070 TCGA-85-8276 TCGA-85-8277 TCGA-85-8351 TCGA-85-8352 TCGA-85-8354 
       16.77         0.43         0.36         1.81         2.20         2.01 
TCGA-85-8481 TCGA-85-8664 TCGA-90-7769 TCGA-92-7341 TCGA-94-7943 TCGA-96-7545 
        0.69         0.10        11.77         3.48        11.70        44.19 
TCGA-98-8020 TCGA-L3-A524 TCGA-LA-A446 TCGA-NC-A5HE 
        2.76        14.76         1.18        56.61 

$`15Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.01        79.46        46.52        11.34 
TCGA-18-3415 TCGA-18-3416 TCGA-18-3419 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 
       59.51        28.34         1.64         2.79        90.54         3.02 
TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 
       27.19       119.54        46.88        99.16        70.16        60.89 
TCGA-21-1078 TCGA-21-1080 TCGA-21-1081 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 
       15.58       122.43         9.34         8.78        31.63        88.11 
TCGA-21-5784 TCGA-21-5787 TCGA-21-A5DI TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 
       41.69        10.82        32.19        19.99         7.33        14.93 
TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 
        4.31        64.21         1.74        14.10        27.02        48.82 
TCGA-22-4591 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 
       20.48        48.33        24.13         0.56        38.17        34.75 
TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5473 TCGA-22-5477 
       19.30         9.57        11.77        31.73        63.55        44.25 
TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5485 TCGA-22-5489 
        0.79        54.28        71.34        79.20        30.12        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-22-A5C4 TCGA-33-4532 TCGA-33-4533 TCGA-33-4547 
       56.32        16.64         0.95         7.63       114.05        43.10 
TCGA-33-4582 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 
      103.53        14.07        54.44        10.82        19.76        27.02 
TCGA-34-2600 TCGA-34-2604 TCGA-34-2608 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       61.61        31.50        32.88        67.79        56.38         9.07 
TCGA-34-5239 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 
       23.24        14.07        30.94        18.15         4.96         1.12 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 
        3.95         0.43         6.58         8.12         7.46         7.82 
TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 
        6.81         0.39         3.39        47.80        74.07        44.75 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
       68.58        55.20        70.03        60.79         1.71        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5039 
        1.94        27.39        36.39        15.58        35.64        17.88 
TCGA-39-5040 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-3920 TCGA-43-5668 
       17.06        40.21        22.49        38.66        33.11        11.47 
TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 
       18.05        12.36        24.89         5.46         3.81         6.97 
TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 TCGA-43-A474 
        7.76        66.51        13.38        11.77         2.93        11.61 
TCGA-43-A56U TCGA-43-A56V TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
       14.20        12.03         9.99        10.65        13.91         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 TCGA-52-7811 
        0.39        29.95        17.79         5.46        30.35         8.75 
TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-5898 TCGA-56-6545 TCGA-56-6546 
       27.45        28.96         0.10        18.25         2.04         0.62 
TCGA-56-7221 TCGA-56-7223 TCGA-56-7580 TCGA-56-7730 TCGA-56-7822 TCGA-56-8503 
        0.99         0.99         1.32         0.20         0.03         1.35 
TCGA-56-8504 TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 
        5.85         1.81         1.18         2.07         0.56         0.53 
TCGA-56-8629 TCGA-56-A49D TCGA-56-A4BW TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A4ZJ 
        1.12         1.25         0.07         1.51         0.99         0.82 
TCGA-56-A4ZK TCGA-56-A5DS TCGA-58-8386 TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 
        0.13         0.26         0.03        13.25        12.43        29.95 
TCGA-58-8392 TCGA-58-A46J TCGA-58-A46L TCGA-58-A46M TCGA-58-A46N TCGA-60-2697 
       16.47        64.87        36.59        23.24        17.75        12.23 
TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
       10.22        96.82        37.94        21.73        80.45        49.48 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2720 
        9.01        56.91        50.33        35.34        48.49         3.19 
TCGA-60-2721 TCGA-60-2723 TCGA-60-2726 TCGA-66-2727 TCGA-66-2737 TCGA-66-2742 
       32.32        35.90        11.77        16.96         2.01        21.07 
TCGA-66-2744 TCGA-66-2753 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 
        0.99         1.02         0.92         0.99         0.99        21.01 
TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2768 TCGA-66-2777 
       25.05         0.99         2.01         1.02         2.01         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
       19.00        12.03         3.98        12.00        24.95         1.97 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 
       25.97        40.01        22.98         4.04        22.98         5.03 
TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7756 
       30.02        10.06        54.08         4.01        49.05         6.64 
TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 TCGA-68-A59I TCGA-68-A59J TCGA-77-6842 
        6.94         8.02         3.16         3.98         3.42        29.56 
TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7142 
       73.12        75.09        23.28        11.18        89.98        42.28 
TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 
       70.13       106.95         0.16         6.51        86.76        53.95 
TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 
       37.81        82.92        12.59        17.72       104.09        11.54 
TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8153 TCGA-77-8154 
       26.40        27.39         6.97         9.63        55.36        35.90 
TCGA-77-8156 TCGA-77-A5FZ TCGA-77-A5G3 TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6175 
        0.33       126.18       117.57        30.81        23.44         9.67 
TCGA-85-6560 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 
        0.36         0.59         0.33         1.61         0.03         1.15 
TCGA-85-8048 TCGA-85-8071 TCGA-85-8072 TCGA-85-8287 TCGA-85-8288 TCGA-85-8350 
        0.85        14.07        16.87         1.45         1.78         1.97 
TCGA-85-8353 TCGA-85-8355 TCGA-85-8479 TCGA-85-8580 TCGA-85-8582 TCGA-85-8666 
        1.78         2.01         0.72        14.63        13.94        15.62 
TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A50M TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 
        0.49         0.82         0.62         0.79         0.43        24.92 
TCGA-90-7766 TCGA-90-7767 TCGA-90-7964 TCGA-90-A4ED TCGA-90-A4EE TCGA-92-7340 
        9.50         2.93        14.07         8.02        10.88         2.70 
TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-96-7544 
        4.01         5.26         2.30         2.86         0.16        39.88 
TCGA-96-8169 TCGA-96-8170 TCGA-96-A4JK TCGA-96-A4JL TCGA-98-7454 TCGA-98-8021 
        6.21         6.94         8.98         6.02         8.42        13.58 
TCGA-98-8022 TCGA-98-8023 TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-MF-A522 TCGA-NC-A5HG 
        7.36        10.13         7.30         1.15         2.73        50.89 
TCGA-NC-A5HI 
       37.32 

  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
              0.10               0.03 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
            173.82             126.18 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
            15.255             12.590 
[1] "0.1 - 173.8 (15.3)" "0.0 - 126.2 (12.6)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "15Q GAIN MUTATED"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED"   "15Q GAIN MUTATED" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
  "15Q GAIN MUTATED"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
  "15Q GAIN MUTATED"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
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  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-56-A5DR         TCGA-56-A5DS         TCGA-58-8386 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
  "15Q GAIN MUTATED"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
  "15Q GAIN MUTATED"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
  "15Q GAIN MUTATED"   "15Q GAIN MUTATED"   "15Q GAIN MUTATED" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-68-A59I 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-68-A59J         TCGA-77-6842         TCGA-77-6843 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED"   "15Q GAIN MUTATED" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED"   "15Q GAIN MUTATED" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
  "15Q GAIN MUTATED"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8153         TCGA-77-8154 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5FZ         TCGA-77-A5G3 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-77-A5GB         TCGA-77-A5GH         TCGA-85-6175 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED"   "15Q GAIN MUTATED" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
  "15Q GAIN MUTATED"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED"   "15Q GAIN MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
  "15Q GAIN MUTATED"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D27V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  15Q GAIN MUTATED         0        8       30        0        13        17
  15Q GAIN WILD-TYPE       1       61      106        1        37        53
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  15Q GAIN MUTATED           13          4        2
  15Q GAIN WILD-TYPE         41         16        3
D27V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  15Q GAIN MUTATED    15  58  12   3
  15Q GAIN WILD-TYPE  80 192  33  16
D27V4, multiclass
    clus
vv   15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  T1               15                 80
  T2               58                192
  T3               12                 33
  T4                3                 16
                    vv
clus                  N0  N1  N2  N3
  15Q GAIN MUTATED    48  32   5   1
  15Q GAIN WILD-TYPE 207  77  29   4
D27V5, multiclass
    clus
vv   15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  N0               48                207
  N1               32                 77
  N2                5                 29
  N3                1                  4
                    vv
clus                  M0  M1  MX
  15Q GAIN MUTATED    78   2   7
  15Q GAIN WILD-TYPE 271   3  42
D27V6, multiclass
    clus
vv   15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  M0               78                271
  M1                2                  3
  MX                7                 42
D27V7, binary
                    cls
clus                   0   1
  15Q GAIN MUTATED    19  69
  15Q GAIN WILD-TYPE  85 236
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q GAIN MUTATED     19   69
  15Q GAIN WILD-TYPE   85  236
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  FEMALE               19                 85
  MALE                 69                236
D27V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  15Q GAIN MUTATED                                       3
  15Q GAIN WILD-TYPE                                     9
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  15Q GAIN MUTATED                                        1
  15Q GAIN WILD-TYPE                                      5
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  15Q GAIN MUTATED                                         0
  15Q GAIN WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  15Q GAIN MUTATED                                                            84
  15Q GAIN WILD-TYPE                                                         306
D27V9, multiclass
                                                             clus
vv                                                            15Q GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      3
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               84
                                                             clus
vv                                                            15Q GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                        9
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                306
D27V10, binary
                    cls
clus                   0   1
  15Q GAIN MUTATED     2  86
  15Q GAIN WILD-TYPE  11 310
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q GAIN MUTATED      2   86
  15Q GAIN WILD-TYPE   11  310
     clus
vv    15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  NO                 2                 11
  YES               86                310
D27V11, continuous
D27V12, continuous
                    vv
clus                  R0  R1  R2  RX
  15Q GAIN MUTATED    75   2   0   4
  15Q GAIN WILD-TYPE 257   6   4  14
D27V13, multiclass
    clus
vv   15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  R0               75                257
  R1                2                  6
  R2                0                  4
  RX                4                 14

Clustering(28) Variable = 16P GAIN MUTATION ANALYSIS
D28V1, survival
                    sevent
clus2                  0   1
  16P GAIN MUTATED    36  27
  16P GAIN WILD-TYPE 208 112
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                63                320 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                27                112 
$`16P GAIN MUTATED`
TCGA-18-3412 TCGA-18-3416 TCGA-18-5595 TCGA-21-1071 TCGA-21-1072 TCGA-21-1081 
       11.34        28.34        27.19        46.88        99.16         9.34 
TCGA-21-1083 TCGA-21-5783 TCGA-21-5787 TCGA-22-1011 TCGA-22-1017 TCGA-22-4593 
        8.78        88.11        10.82         1.74        48.82        35.08 
TCGA-33-4532 TCGA-33-4566 TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-34-2604 
        7.63       173.82       141.34        14.07        54.44        31.50 
TCGA-34-5240 TCGA-34-5241 TCGA-34-7107 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
       12.00        14.07         1.12         6.81         0.39         3.39 
TCGA-39-5034 TCGA-39-5036 TCGA-43-2576 TCGA-43-2578 TCGA-43-5668 TCGA-43-A56V 
       36.39        35.64        40.21        22.49        11.47        12.03 
TCGA-52-7811 TCGA-56-1622 TCGA-56-6545 TCGA-56-7222 TCGA-56-7223 TCGA-56-8504 
        8.75        28.96         2.04         0.43         0.99         5.85 
TCGA-56-A4BW TCGA-60-2706 TCGA-60-2722 TCGA-60-2725 TCGA-60-2726 TCGA-66-2737 
        0.07        92.71        29.85        26.83        11.77         2.01 
TCGA-66-2756 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2791 TCGA-66-2793 
        0.99         2.01         2.01        23.01         5.03        10.06 
TCGA-77-7465 TCGA-77-8009 TCGA-77-8139 TCGA-77-8150 TCGA-85-6175 TCGA-85-6560 
       15.75        53.95       104.09        54.41         9.67         0.36 
TCGA-85-7843 TCGA-85-8072 TCGA-85-8276 TCGA-85-8287 TCGA-85-8350 TCGA-92-7341 
        1.15        16.87         0.43         1.45         1.97         3.48 
TCGA-98-8020 TCGA-98-8022 TCGA-J1-A4AH 
        2.76         7.36         7.30 

$`16P GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.01        79.46         4.80        46.52 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 
       13.02        59.51        24.92         1.64        43.76         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-21-1070 TCGA-21-1075 TCGA-21-1076 
        2.79        90.54         3.02       119.54        70.16        60.89 
TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 TCGA-21-1082 TCGA-21-5782 
       34.78        15.58        31.73       122.43       119.80        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-A5DI TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 
       41.69        33.93        32.19        19.99         7.33        14.93 
TCGA-22-1002 TCGA-22-1005 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4594 
        4.31        64.21        14.10        27.02        20.48        48.33 
TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 
       24.13         0.56        38.17        34.75        13.12        32.02 
TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       19.30         9.57        11.77        31.73        64.93        63.55 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 
       14.63        44.25         0.79        54.28        71.34        79.20 
TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 
       11.74        18.84        30.12        62.86        56.32        16.64 
TCGA-22-A5C4 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4582 TCGA-33-4589 
        0.95       114.05        97.94        43.10       103.53        10.82 
TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2605 TCGA-34-2608 
       19.76        27.02         2.63        61.61        28.96        32.88 
TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       31.27        50.24        67.79        56.38         9.07        23.24 
TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 
       30.94        18.15         4.96         3.95         0.43         0.39 
TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-39-5011 TCGA-39-5016 
        6.58         8.12         7.46         7.82        47.80        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.75        68.58        55.20        70.03        60.79         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5037 TCGA-39-5039 
       24.33         1.94        27.39        15.58        35.70        17.88 
TCGA-39-5040 TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 TCGA-43-5670 TCGA-43-6143 
       17.06        38.66        27.02        33.11        18.05        12.36 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 
       24.89        10.19         5.46         3.81         6.97         7.76 
TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 TCGA-43-A474 TCGA-43-A475 
       66.51        13.38        11.77         2.93        11.61         9.73 
TCGA-43-A56U TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
       14.20         9.99        10.65        13.91         0.39         0.39 
TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 TCGA-52-7812 TCGA-56-5897 
       29.95        17.79         5.46        30.35        27.45         0.10 
TCGA-56-5898 TCGA-56-6546 TCGA-56-7221 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 
       18.25         0.62         0.99         1.45         1.32         0.85 
TCGA-56-7730 TCGA-56-7822 TCGA-56-8503 TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 
        0.20         0.03         1.35         1.81         1.18         2.07 
TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 TCGA-56-A49D TCGA-56-A4BX TCGA-56-A4BY 
        0.56         0.53         1.12         1.25         1.51         0.99 
TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DR TCGA-56-A5DS TCGA-58-8386 TCGA-58-8387 
        0.82         0.13         0.13         0.26         0.03        13.25 
TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 TCGA-58-8393 TCGA-58-A46J 
       12.43        29.95        71.24        16.47        34.78        64.87 
TCGA-58-A46K TCGA-58-A46L TCGA-58-A46M TCGA-58-A46N TCGA-60-2695 TCGA-60-2696 
       34.36        36.59        23.24        17.75        21.11         3.58 
TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2707 TCGA-60-2708 
       12.23        10.22        96.82        37.94        21.73        80.45 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 
       49.48        66.54        41.42         9.01        56.91        50.33 
TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2723 
       35.34        48.49        42.64         3.19        32.32        35.90 
TCGA-60-2724 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 
       23.57        16.96        43.10        21.07         0.99         1.02 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        2.01         0.92         0.99        21.01        25.05         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2769 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         1.02         7.07        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
       19.00        12.03         3.98        12.00        24.95         1.97 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2792 
       25.97        40.01        22.98         4.04        22.98        30.02 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 
       54.08         4.01        49.05         2.73         6.64         6.94 
TCGA-68-8250 TCGA-68-8251 TCGA-68-A59I TCGA-68-A59J TCGA-77-6842 TCGA-77-6843 
        8.02         3.16         3.98         3.42        29.56        73.12 
TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 
       75.09        23.28        11.18        89.98        20.78         0.49 
TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-8007 
       42.28        70.13       106.95         0.16        46.78         6.51 
TCGA-77-8008 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 
       86.76        37.81        82.92        12.59        53.92        39.09 
TCGA-77-8138 TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 
       17.72        11.54        26.40        27.39         6.97         9.63 
TCGA-77-8153 TCGA-77-8154 TCGA-77-8156 TCGA-77-A5FZ TCGA-77-A5G3 TCGA-77-A5GB 
       55.36        35.90         0.33       126.18       117.57        30.81 
TCGA-77-A5GH TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 
       23.44        12.99         1.12         0.59         0.33         1.61 
TCGA-85-7699 TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 
        0.03         1.25         1.97         0.85         1.97         0.53 
TCGA-85-8070 TCGA-85-8071 TCGA-85-8277 TCGA-85-8288 TCGA-85-8351 TCGA-85-8352 
       16.77        14.07         0.36         1.78         1.81         2.20 
TCGA-85-8353 TCGA-85-8354 TCGA-85-8355 TCGA-85-8479 TCGA-85-8481 TCGA-85-8580 
        1.78         2.01         2.01         0.72         0.69        14.63 
TCGA-85-8582 TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A50M 
       13.94         0.10        15.62         0.49         0.82         0.62 
TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 
        0.79         0.43        24.92         9.50         2.93        11.77 
TCGA-90-7964 TCGA-90-A4ED TCGA-90-A4EE TCGA-92-7340 TCGA-92-8063 TCGA-92-8064 
       14.07         8.02        10.88         2.70         4.01         5.26 
TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 TCGA-96-7545 
        2.30         2.86         0.16        11.70        39.88        44.19 
TCGA-96-8169 TCGA-96-8170 TCGA-96-A4JK TCGA-96-A4JL TCGA-98-7454 TCGA-98-8021 
        6.21         6.94         8.98         6.02         8.42        13.58 
TCGA-98-8023 TCGA-L3-A4E7 TCGA-L3-A524 TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE 
       10.13         1.15        14.76         1.18         2.73        56.61 
TCGA-NC-A5HG TCGA-NC-A5HI 
       50.89        37.32 

  16P GAIN MUTATED 16P GAIN WILD-TYPE 
              0.07               0.03 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
            173.82             126.18 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
             11.34              14.07 
[1] "0.1 - 173.8 (11.3)" "0.0 - 126.2 (14.1)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56U 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-43-A56V         TCGA-46-3768         TCGA-46-6025 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-46-6026         TCGA-51-4079         TCGA-51-4080 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-51-4081         TCGA-52-7622         TCGA-52-7809 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-52-7810         TCGA-52-7811         TCGA-52-7812 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-5898 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-56-A49D         TCGA-56-A4BW         TCGA-56-A4BX 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-56-A4BY         TCGA-56-A4ZJ         TCGA-56-A4ZK 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-56-A5DR         TCGA-56-A5DS         TCGA-58-8386 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-68-A59I 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-68-A59J         TCGA-77-6842         TCGA-77-6843 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8153         TCGA-77-8154 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5FZ         TCGA-77-A5G3 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-A5GB         TCGA-77-A5GH         TCGA-85-6175 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56U 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-43-A56V         TCGA-46-3768         TCGA-46-6025 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-46-6026         TCGA-51-4079         TCGA-51-4080 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-51-4081         TCGA-52-7622         TCGA-52-7809 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-52-7810         TCGA-52-7811         TCGA-52-7812 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-5898 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-56-A49D         TCGA-56-A4BW         TCGA-56-A4BX 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-56-A4BY         TCGA-56-A4ZJ         TCGA-56-A4ZK 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-56-A5DR         TCGA-56-A5DS         TCGA-58-8386 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-68-A59I 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-68-A59J         TCGA-77-6842         TCGA-77-6843 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8153         TCGA-77-8154 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5FZ         TCGA-77-A5G3 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-A5GB         TCGA-77-A5GH         TCGA-85-6175 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56U 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-43-A56V         TCGA-46-3768         TCGA-46-6025 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-46-6026         TCGA-51-4079         TCGA-51-4080 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-51-4081         TCGA-52-7622         TCGA-52-7809 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-52-7810         TCGA-52-7811         TCGA-52-7812 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-5898 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-56-A49D         TCGA-56-A4BW         TCGA-56-A4BX 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-56-A4BY         TCGA-56-A4ZJ         TCGA-56-A4ZK 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-56-A5DR         TCGA-56-A5DS         TCGA-58-8386 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-68-A59I 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-68-A59J         TCGA-77-6842         TCGA-77-6843 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8153         TCGA-77-8154 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5FZ         TCGA-77-A5G3 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-A5GB         TCGA-77-A5GH         TCGA-85-6175 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D28V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  16P GAIN MUTATED         0       11       19        1        10        12
  16P GAIN WILD-TYPE       1       58      117        0        40        58
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  16P GAIN MUTATED            9          5        0
  16P GAIN WILD-TYPE         45         15        5
D28V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  16P GAIN MUTATED    14  44   8   2
  16P GAIN WILD-TYPE  81 206  37  17
D28V4, multiclass
    clus
vv   16P GAIN MUTATED 16P GAIN WILD-TYPE
  T1               14                 81
  T2               44                206
  T3                8                 37
  T4                2                 17
                    vv
clus                  N0  N1  N2  N3
  16P GAIN MUTATED    41  19   6   2
  16P GAIN WILD-TYPE 214  90  28   3
D28V5, multiclass
    clus
vv   16P GAIN MUTATED 16P GAIN WILD-TYPE
  N0               41                214
  N1               19                 90
  N2                6                 28
  N3                2                  3
                    vv
clus                  M0  M1  MX
  16P GAIN MUTATED    62   0   5
  16P GAIN WILD-TYPE 287   5  44
D28V6, multiclass
    clus
vv   16P GAIN MUTATED 16P GAIN WILD-TYPE
  M0               62                287
  M1                0                  5
  MX                5                 44
D28V7, binary
                    cls
clus                   0   1
  16P GAIN MUTATED    11  57
  16P GAIN WILD-TYPE  93 248
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P GAIN MUTATED     11   57
  16P GAIN WILD-TYPE   93  248
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  FEMALE               11                 93
  MALE                 57                248
D28V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  16P GAIN MUTATED                                       1
  16P GAIN WILD-TYPE                                    11
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  16P GAIN MUTATED                                        1
  16P GAIN WILD-TYPE                                      5
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  16P GAIN MUTATED                                         1
  16P GAIN WILD-TYPE                                       0
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  16P GAIN MUTATED                                                            65
  16P GAIN WILD-TYPE                                                         325
D28V9, multiclass
                                                             clus
vv                                                            16P GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      1
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               65
                                                             clus
vv                                                            16P GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       11
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                325
D28V10, binary
                    cls
clus                   0   1
  16P GAIN MUTATED     2  66
  16P GAIN WILD-TYPE  11 330
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P GAIN MUTATED      2   66
  16P GAIN WILD-TYPE   11  330
     clus
vv    16P GAIN MUTATED 16P GAIN WILD-TYPE
  NO                 2                 11
  YES               66                330
D28V11, continuous
D28V12, continuous
                    vv
clus                  R0  R1  R2  RX
  16P GAIN MUTATED    57   1   0   2
  16P GAIN WILD-TYPE 275   7   4  16
D28V13, multiclass
    clus
vv   16P GAIN MUTATED 16P GAIN WILD-TYPE
  R0               57                275
  R1                1                  7
  R2                0                  4
  RX                2                 16

Clustering(29) Variable = 16Q GAIN MUTATION ANALYSIS
D29V1, survival
                    sevent
clus2                  0   1
  16Q GAIN MUTATED    40  23
  16Q GAIN WILD-TYPE 204 116
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                63                320 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                23                116 
$`16Q GAIN MUTATED`
TCGA-18-3412 TCGA-18-3414 TCGA-18-3416 TCGA-18-5595 TCGA-21-1071 TCGA-21-1072 
       11.34        13.02        28.34        27.19        46.88        99.16 
TCGA-21-1079 TCGA-21-5783 TCGA-21-5786 TCGA-21-5787 TCGA-22-1011 TCGA-22-1017 
       31.73        88.11        33.93        10.82         1.74        48.82 
TCGA-22-4593 TCGA-33-4532 TCGA-33-4566 TCGA-33-4583 TCGA-33-4587 TCGA-34-5241 
       35.08         7.63       173.82       141.34        54.44        14.07 
TCGA-34-7107 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-39-5036 TCGA-39-5037 
        1.12         7.82         6.81         0.39        35.64        35.70 
TCGA-43-2576 TCGA-43-5668 TCGA-43-6143 TCGA-43-A475 TCGA-43-A56V TCGA-52-7811 
       40.21        11.47        12.36         9.73        12.03         8.75 
TCGA-56-1622 TCGA-56-6545 TCGA-56-7223 TCGA-56-8504 TCGA-56-A4BW TCGA-58-A46K 
       28.96         2.04         0.99         5.85         0.07        34.36 
TCGA-60-2706 TCGA-60-2708 TCGA-60-2722 TCGA-60-2725 TCGA-60-2726 TCGA-66-2737 
       92.71        80.45        29.85        26.83        11.77         2.01 
TCGA-66-2756 TCGA-66-2768 TCGA-66-2781 TCGA-66-2791 TCGA-77-7465 TCGA-77-8009 
        0.99         2.01         3.98         5.03        15.75        53.95 
TCGA-85-6175 TCGA-85-6560 TCGA-85-7843 TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 
        9.67         0.36         1.15        16.87         0.43         0.36 
TCGA-85-8287 TCGA-85-8350 TCGA-85-8352 TCGA-85-A53L TCGA-92-7341 TCGA-98-8020 
        1.45         1.97         2.20         0.43         3.48         2.76 
TCGA-98-8022 TCGA-J1-A4AH TCGA-LA-A446 
        7.36         7.30         1.18 

$`16Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.01        79.46         4.80        46.52 
TCGA-18-3415 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 
       59.51        24.92         1.64        43.76         6.15         2.79 
TCGA-18-4721 TCGA-18-5592 TCGA-21-1070 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 
       90.54         3.02       119.54        70.16        60.89        34.78 
TCGA-21-1078 TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 
       15.58       122.43         9.34       119.80         8.78        31.63 
TCGA-21-5784 TCGA-21-A5DI TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 
       41.69        32.19        19.99         7.33        14.93         4.31 
TCGA-22-1005 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4594 TCGA-22-4595 
       64.21        14.10        27.02        20.48        48.33        24.13 
TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 
        0.56        38.17        34.75        13.12        32.02        19.30 
TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
        9.57        11.77        31.73        64.93        63.55        14.63 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 
       44.25         0.79        54.28        71.34        79.20        11.74 
TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-22-A5C4 
       18.84        30.12        62.86        56.32        16.64         0.95 
TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4582 TCGA-33-4586 TCGA-33-4589 
      114.05        97.94        43.10       103.53        14.07        10.82 
TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 
       19.76        27.02         2.63        61.61        31.50        28.96 
TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       32.88        31.27        50.24        67.79        56.38         9.07 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
       23.24        12.00        30.94        18.15         4.96         3.95 
TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-5819 
        0.43         0.39         6.58         8.12         7.46         3.39 
TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
       47.80        74.07        44.75        68.58        55.20        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 
       60.79         1.71        24.33         1.94        27.39        36.39 
TCGA-39-5035 TCGA-39-5039 TCGA-39-5040 TCGA-43-2578 TCGA-43-2581 TCGA-43-3394 
       15.58        17.88        17.06        22.49        38.66        27.02 
TCGA-43-3920 TCGA-43-5670 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 
       33.11        18.05        24.89        10.19         5.46         3.81 
TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 
        6.97         7.76        66.51        13.38        11.77         2.93 
TCGA-43-A474 TCGA-43-A56U TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
       11.61        14.20         9.99        10.65        13.91         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 TCGA-52-7812 
        0.39        29.95        17.79         5.46        30.35        27.45 
TCGA-56-5897 TCGA-56-5898 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7579 
        0.10        18.25         0.62         0.99         0.43         1.45 
TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 TCGA-56-8503 TCGA-56-8622 
        1.32         0.85         0.20         0.03         1.35         1.81 
TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 TCGA-56-A49D 
        1.18         2.07         0.56         0.53         1.12         1.25 
TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DR TCGA-56-A5DS 
        1.51         0.99         0.82         0.13         0.13         0.26 
TCGA-58-8386 TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 
        0.03        13.25        12.43        29.95        71.24        16.47 
TCGA-58-8393 TCGA-58-A46J TCGA-58-A46L TCGA-58-A46M TCGA-58-A46N TCGA-60-2695 
       34.78        64.87        36.59        23.24        17.75        21.11 
TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2707 
        3.58        12.23        10.22        96.82        37.94        21.73 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 
       49.48        66.54        41.42         9.01        56.91        50.33 
TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2723 
       35.34        48.49        42.64         3.19        32.32        35.90 
TCGA-60-2724 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 
       23.57        16.96        43.10        21.07         0.99         1.02 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        2.01         0.92         0.99        21.01        25.05         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 
        2.01         1.02         2.01         7.07        23.01        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2782 TCGA-66-2783 
        3.02         2.01        19.00        12.03        12.00        24.95 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 
        1.97        25.97        40.01        22.98         4.04        22.98 
TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 
       30.02        10.06        54.08         4.01        49.05         2.73 
TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 TCGA-68-A59I TCGA-68-A59J 
        6.64         6.94         8.02         3.16         3.98         3.42 
TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 
       29.56        73.12        75.09        23.28        11.18        89.98 
TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 
       20.78         0.49        42.28        70.13       106.95         0.16 
TCGA-77-7463 TCGA-77-8007 TCGA-77-8008 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 
       46.78         6.51        86.76        37.81        82.92        12.59 
TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 
       53.92        39.09        17.72       104.09        11.54        26.40 
TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-77-8153 TCGA-77-8154 
       27.39         6.97         9.63        54.41        55.36        35.90 
TCGA-77-8156 TCGA-77-A5FZ TCGA-77-A5G3 TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6561 
        0.33       126.18       117.57        30.81        23.44        12.99 
TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7844 
        1.12         0.59         0.33         1.61         0.03         1.25 
TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 
        1.97         0.85         1.97         0.53        16.77        14.07 
TCGA-85-8288 TCGA-85-8351 TCGA-85-8353 TCGA-85-8354 TCGA-85-8355 TCGA-85-8479 
        1.78         1.81         1.78         2.01         2.01         0.72 
TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL 
        0.69        14.63        13.94         0.10        15.62         0.49 
TCGA-85-A4QR TCGA-85-A50M TCGA-85-A513 TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 
        0.82         0.62         0.79        24.92         9.50         2.93 
TCGA-90-7769 TCGA-90-7964 TCGA-90-A4ED TCGA-90-A4EE TCGA-92-7340 TCGA-92-8063 
       11.77        14.07         8.02        10.88         2.70         4.01 
TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 
        5.26         2.30         2.86         0.16        11.70        39.88 
TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 TCGA-96-A4JK TCGA-96-A4JL TCGA-98-7454 
       44.19         6.21         6.94         8.98         6.02         8.42 
TCGA-98-8021 TCGA-98-8023 TCGA-L3-A4E7 TCGA-L3-A524 TCGA-MF-A522 TCGA-NC-A5HE 
       13.58        10.13         1.15        14.76         2.73        56.61 
TCGA-NC-A5HG TCGA-NC-A5HI 
       50.89        37.32 

  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
              0.07               0.03 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
            173.82             126.18 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
            10.820             14.085 
[1] "0.1 - 173.8 (10.8)" "0.0 - 126.2 (14.1)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "16Q GAIN MUTATED"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED"   "16Q GAIN MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "16Q GAIN MUTATED"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
  "16Q GAIN MUTATED"   "16Q GAIN MUTATED"   "16Q GAIN MUTATED" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-56-A49D         TCGA-56-A4BW         TCGA-56-A4BX 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-56-A4BY         TCGA-56-A4ZJ         TCGA-56-A4ZK 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-56-A5DR         TCGA-56-A5DS         TCGA-58-8386 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED"   "16Q GAIN MUTATED" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-68-A59I 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-68-A59J         TCGA-77-6842         TCGA-77-6843 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8153         TCGA-77-8154 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5FZ         TCGA-77-A5G3 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-77-A5GB         TCGA-77-A5GH         TCGA-85-6175 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
  "16Q GAIN MUTATED"   "16Q GAIN MUTATED"   "16Q GAIN MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
[1] "hr=" "1"  
D29V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  16Q GAIN MUTATED         0       10       20        1        12        11
  16Q GAIN WILD-TYPE       1       59      116        0        38        59
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  16Q GAIN MUTATED           10          4        1
  16Q GAIN WILD-TYPE         44         16        4
D29V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  16Q GAIN MUTATED    14  43   8   4
  16Q GAIN WILD-TYPE  81 207  37  15
D29V4, multiclass
    clus
vv   16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  T1               14                 81
  T2               43                207
  T3                8                 37
  T4                4                 15
                    vv
clus                  N0  N1  N2  N3
  16Q GAIN MUTATED    42  21   5   1
  16Q GAIN WILD-TYPE 213  88  29   4
D29V5, multiclass
    clus
vv   16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  N0               42                213
  N1               21                 88
  N2                5                 29
  N3                1                  4
                    vv
clus                  M0  M1  MX
  16Q GAIN MUTATED    62   1   6
  16Q GAIN WILD-TYPE 287   4  43
D29V6, multiclass
    clus
vv   16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  M0               62                287
  M1                1                  4
  MX                6                 43
D29V7, binary
                    cls
clus                   0   1
  16Q GAIN MUTATED     9  60
  16Q GAIN WILD-TYPE  95 245
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q GAIN MUTATED      9   60
  16Q GAIN WILD-TYPE   95  245
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  FEMALE                9                 95
  MALE                 60                245
D29V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  16Q GAIN MUTATED                                       2
  16Q GAIN WILD-TYPE                                    10
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  16Q GAIN MUTATED                                        1
  16Q GAIN WILD-TYPE                                      5
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  16Q GAIN MUTATED                                         1
  16Q GAIN WILD-TYPE                                       0
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  16Q GAIN MUTATED                                                            65
  16Q GAIN WILD-TYPE                                                         325
D29V9, multiclass
                                                             clus
vv                                                            16Q GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      2
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               65
                                                             clus
vv                                                            16Q GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       10
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                325
D29V10, binary
                    cls
clus                   0   1
  16Q GAIN MUTATED     2  67
  16Q GAIN WILD-TYPE  11 329
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q GAIN MUTATED      2   67
  16Q GAIN WILD-TYPE   11  329
     clus
vv    16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  NO                 2                 11
  YES               67                329
D29V11, continuous
D29V12, continuous
                    vv
clus                  R0  R1  R2  RX
  16Q GAIN MUTATED    58   3   0   3
  16Q GAIN WILD-TYPE 274   5   4  15
D29V13, multiclass
    clus
vv   16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  R0               58                274
  R1                3                  5
  R2                0                  4
  RX                3                 15

Clustering(30) Variable = 17P GAIN MUTATION ANALYSIS
D30V1, survival
                    sevent
clus2                  0   1
  17P GAIN MUTATED    33  18
  17P GAIN WILD-TYPE 211 121
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                51                332 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                18                121 
$`17P GAIN MUTATED`
TCGA-18-3412 TCGA-18-3417 TCGA-21-1071 TCGA-21-1072 TCGA-22-1017 TCGA-22-4593 
       11.34        24.92        46.88        99.16        48.82        35.08 
TCGA-22-4601 TCGA-22-4613 TCGA-22-5474 TCGA-33-4532 TCGA-33-4538 TCGA-33-4582 
       34.75        11.77        14.63         7.63        97.94       103.53 
TCGA-34-2596 TCGA-34-5240 TCGA-34-5241 TCGA-43-2578 TCGA-43-7657 TCGA-43-8118 
        2.63        12.00        14.07        22.49         7.76         2.93 
TCGA-46-6025 TCGA-56-7222 TCGA-56-7582 TCGA-56-7730 TCGA-56-8504 TCGA-58-8391 
       10.65         0.43         0.85         0.20         5.85        71.24 
TCGA-58-A46K TCGA-60-2726 TCGA-66-2756 TCGA-66-2770 TCGA-66-2787 TCGA-66-2792 
       34.36        11.77         0.99        23.01        40.01        30.02 
TCGA-68-8250 TCGA-68-8251 TCGA-77-7142 TCGA-77-8156 TCGA-85-7843 TCGA-85-7950 
        8.02         3.16        42.28         0.33         1.15         1.97 
TCGA-85-8277 TCGA-85-8350 TCGA-85-8352 TCGA-85-8353 TCGA-85-8354 TCGA-85-8664 
        0.36         1.97         2.20         1.78         2.01         0.10 
TCGA-90-7769 TCGA-90-A4EE TCGA-92-7340 TCGA-94-7557 TCGA-94-7943 TCGA-98-8020 
       11.77        10.88         2.70         0.16        11.70         2.76 
TCGA-J1-A4AH TCGA-L3-A524 TCGA-MF-A522 
        7.30        14.76         2.73 

$`17P GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.01        79.46         4.80        46.52 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 
       13.02        59.51        28.34         1.64        43.76         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1075 
        2.79        90.54         3.02        27.19       119.54        70.16 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 
       60.89        34.78        15.58        31.73       122.43         9.34 
TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 
      119.80         8.78        31.63        88.11        41.69        33.93 
TCGA-21-5787 TCGA-21-A5DI TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 
       10.82        32.19        19.99         7.33        14.93         4.31 
TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4594 
       64.21         1.74        14.10        27.02        20.48        48.33 
TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 
       24.13         0.56        38.17        13.12        32.02        19.30 
TCGA-22-4609 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5477 TCGA-22-5478 
        9.57        31.73        64.93        63.55        44.25         0.79 
TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 
       54.28        71.34        79.20        11.74        18.84        30.12 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-22-A5C4 TCGA-33-4533 TCGA-33-4547 
       62.86        56.32        16.64         0.95       114.05        43.10 
TCGA-33-4566 TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 
      173.82       141.34        14.07        54.44        10.82        19.76 
TCGA-33-6738 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 
       27.02        61.61        31.50        28.96        32.88        31.27 
TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5927 
       50.24        67.79        56.38         9.07        23.24        30.94 
TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 
       18.15         4.96         1.12         3.95         0.43         0.39 
TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        6.58         8.12         7.46         7.82         6.81         0.39 
TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 
        3.39        47.80        74.07        44.75        68.58        55.20 
TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 
       70.03        60.79         1.71        24.33         1.94        27.39 
TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-39-5040 
       36.39        15.58        35.64        35.70        17.88        17.06 
TCGA-43-2576 TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 
       40.21        38.66        27.02        33.11        11.47        18.05 
TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 
       12.36        24.89        10.19         5.46         3.81         6.97 
TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-43-A474 TCGA-43-A475 TCGA-43-A56U 
       66.51        13.38        11.77        11.61         9.73        14.20 
TCGA-43-A56V TCGA-46-3768 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 
       12.03         9.99        13.91         0.39         0.39        29.95 
TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 
       17.79         5.46        30.35         8.75        27.45        28.96 
TCGA-56-5897 TCGA-56-5898 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7223 
        0.10        18.25         2.04         0.62         0.99         0.99 
TCGA-56-7579 TCGA-56-7580 TCGA-56-7822 TCGA-56-8503 TCGA-56-8622 TCGA-56-8624 
        1.45         1.32         0.03         1.35         1.81         1.18 
TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 TCGA-56-A49D TCGA-56-A4BW 
        2.07         0.56         0.53         1.12         1.25         0.07 
TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DR TCGA-56-A5DS 
        1.51         0.99         0.82         0.13         0.13         0.26 
TCGA-58-8386 TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 TCGA-58-8392 TCGA-58-8393 
        0.03        13.25        12.43        29.95        16.47        34.78 
TCGA-58-A46J TCGA-58-A46L TCGA-58-A46M TCGA-58-A46N TCGA-60-2695 TCGA-60-2696 
       64.87        36.59        23.24        17.75        21.11         3.58 
TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 
       12.23        10.22        96.82        37.94        92.71        21.73 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 
       80.45        49.48        66.54        41.42         9.01        56.91 
TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
       50.33        35.34        48.49        42.64         3.19        32.32 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-66-2727 TCGA-66-2734 
       29.85        35.90        23.57        26.83        16.96        43.10 
TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 
        2.01        21.07         0.99         1.02         2.01         0.92 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        21.01        25.05         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         2.01         7.07        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
       19.00        12.03         3.98        12.00        24.95         1.97 
TCGA-66-2786 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2793 
       25.97        22.98         4.04        22.98         5.03        10.06 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 
       54.08         4.01        49.05         2.73         6.64         6.94 
TCGA-68-A59I TCGA-68-A59J TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 
        3.98         3.42        29.56        73.12        75.09        23.28 
TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7335 TCGA-77-7337 
       11.18        89.98        20.78         0.49        70.13       106.95 
TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 
        0.16        46.78        15.75         6.51        86.76        53.95 
TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 
       37.81        82.92        12.59        53.92        39.09        17.72 
TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 
      104.09        11.54        26.40        27.39         6.97         9.63 
TCGA-77-8150 TCGA-77-8153 TCGA-77-8154 TCGA-77-A5FZ TCGA-77-A5G3 TCGA-77-A5GB 
       54.41        55.36        35.90       126.18       117.57        30.81 
TCGA-77-A5GH TCGA-85-6175 TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 
       23.44         9.67         0.36        12.99         1.12         0.59 
TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7844 TCGA-85-8048 TCGA-85-8049 
        0.33         1.61         0.03         1.25         0.85         1.97 
TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8287 
        0.53        16.77        14.07        16.87         0.43         1.45 
TCGA-85-8288 TCGA-85-8351 TCGA-85-8355 TCGA-85-8479 TCGA-85-8481 TCGA-85-8580 
        1.78         1.81         2.01         0.72         0.69        14.63 
TCGA-85-8582 TCGA-85-8666 TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A50M TCGA-85-A513 
       13.94        15.62         0.49         0.82         0.62         0.79 
TCGA-85-A53L TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7964 TCGA-90-A4ED 
        0.43        24.92         9.50         2.93        14.07         8.02 
TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-96-7544 
        3.48         4.01         5.26         2.30         2.86        39.88 
TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 TCGA-96-A4JK TCGA-96-A4JL TCGA-98-7454 
       44.19         6.21         6.94         8.98         6.02         8.42 
TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 TCGA-L3-A4E7 TCGA-LA-A446 TCGA-NC-A5HE 
       13.58         7.36        10.13         1.15         1.18        56.61 
TCGA-NC-A5HG TCGA-NC-A5HI 
       50.89        37.32 

  17P GAIN MUTATED 17P GAIN WILD-TYPE 
              0.10               0.03 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
            103.53             173.82 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
             10.65              14.15 
[1] "0.1 - 103.5 (10.7)" "0.0 - 173.8 (14.1)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED"   "17P GAIN MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
  "17P GAIN MUTATED"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56U 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-43-A56V         TCGA-46-3768         TCGA-46-6025 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-46-6026         TCGA-51-4079         TCGA-51-4080 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-51-4081         TCGA-52-7622         TCGA-52-7809 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-52-7810         TCGA-52-7811         TCGA-52-7812 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-5898 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED"   "17P GAIN MUTATED" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-56-A49D         TCGA-56-A4BW         TCGA-56-A4BX 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-56-A4BY         TCGA-56-A4ZJ         TCGA-56-A4ZK 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-56-A5DR         TCGA-56-A5DS         TCGA-58-8386 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-68-A59I 
  "17P GAIN MUTATED"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-68-A59J         TCGA-77-6842         TCGA-77-6843 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8153         TCGA-77-8154 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5FZ         TCGA-77-A5G3 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-A5GB         TCGA-77-A5GH         TCGA-85-6175 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED"   "17P GAIN MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED"   "17P GAIN MUTATED" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED"   "17P GAIN MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
  "17P GAIN MUTATED"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56U 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-43-A56V         TCGA-46-3768         TCGA-46-6025 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-46-6026         TCGA-51-4079         TCGA-51-4080 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-51-4081         TCGA-52-7622         TCGA-52-7809 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-52-7810         TCGA-52-7811         TCGA-52-7812 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-5898 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED"   "17P GAIN MUTATED" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-56-A49D         TCGA-56-A4BW         TCGA-56-A4BX 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-56-A4BY         TCGA-56-A4ZJ         TCGA-56-A4ZK 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-56-A5DR         TCGA-56-A5DS         TCGA-58-8386 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-68-A59I 
  "17P GAIN MUTATED"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-68-A59J         TCGA-77-6842         TCGA-77-6843 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8153         TCGA-77-8154 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5FZ         TCGA-77-A5G3 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-A5GB         TCGA-77-A5GH         TCGA-85-6175 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED"   "17P GAIN MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED"   "17P GAIN MUTATED" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED"   "17P GAIN MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
  "17P GAIN MUTATED"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56U 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-43-A56V         TCGA-46-3768         TCGA-46-6025 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-46-6026         TCGA-51-4079         TCGA-51-4080 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-51-4081         TCGA-52-7622         TCGA-52-7809 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-52-7810         TCGA-52-7811         TCGA-52-7812 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-5898 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED"   "17P GAIN MUTATED" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-56-A49D         TCGA-56-A4BW         TCGA-56-A4BX 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-56-A4BY         TCGA-56-A4ZJ         TCGA-56-A4ZK 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-56-A5DR         TCGA-56-A5DS         TCGA-58-8386 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-68-A59I 
  "17P GAIN MUTATED"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-68-A59J         TCGA-77-6842         TCGA-77-6843 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8153         TCGA-77-8154 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5FZ         TCGA-77-A5G3 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-A5GB         TCGA-77-A5GH         TCGA-85-6175 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED"   "17P GAIN MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED"   "17P GAIN MUTATED" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D30V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  17P GAIN MUTATED         0       10       16        0         8         8
  17P GAIN WILD-TYPE       1       59      120        1        42        62
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  17P GAIN MUTATED            8          1        1
  17P GAIN WILD-TYPE         46         19        4
D30V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  17P GAIN MUTATED    10  36   5   2
  17P GAIN WILD-TYPE  85 214  40  17
D30V4, multiclass
    clus
vv   17P GAIN MUTATED 17P GAIN WILD-TYPE
  T1               10                 85
  T2               36                214
  T3                5                 40
  T4                2                 17
                    vv
clus                  N0  N1  N2  N3
  17P GAIN MUTATED    33  15   4   0
  17P GAIN WILD-TYPE 222  94  30   5
D30V5, multiclass
    clus
vv   17P GAIN MUTATED 17P GAIN WILD-TYPE
  N0               33                222
  N1               15                 94
  N2                4                 30
  N3                0                  5
                    vv
clus                  M0  M1  MX
  17P GAIN MUTATED    42   1   9
  17P GAIN WILD-TYPE 307   4  40
D30V6, multiclass
    clus
vv   17P GAIN MUTATED 17P GAIN WILD-TYPE
  M0               42                307
  M1                1                  4
  MX                9                 40
D30V7, binary
                    cls
clus                   0   1
  17P GAIN MUTATED    12  41
  17P GAIN WILD-TYPE  92 264
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P GAIN MUTATED     12   41
  17P GAIN WILD-TYPE   92  264
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  FEMALE               12                 92
  MALE                 41                264
D30V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  17P GAIN MUTATED                                       2
  17P GAIN WILD-TYPE                                    10
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  17P GAIN MUTATED                                        1
  17P GAIN WILD-TYPE                                      5
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  17P GAIN MUTATED                                         0
  17P GAIN WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  17P GAIN MUTATED                                                            50
  17P GAIN WILD-TYPE                                                         340
D30V9, multiclass
                                                             clus
vv                                                            17P GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      2
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               50
                                                             clus
vv                                                            17P GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       10
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                340
D30V10, binary
                    cls
clus                   0   1
  17P GAIN MUTATED     0  53
  17P GAIN WILD-TYPE  13 343
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P GAIN MUTATED      0   53
  17P GAIN WILD-TYPE   13  343
     clus
vv    17P GAIN MUTATED 17P GAIN WILD-TYPE
  NO                 0                 13
  YES               53                343
D30V11, continuous
D30V12, continuous
                    vv
clus                  R0  R1  R2  RX
  17P GAIN MUTATED    38   1   0   3
  17P GAIN WILD-TYPE 294   7   4  15
D30V13, multiclass
    clus
vv   17P GAIN MUTATED 17P GAIN WILD-TYPE
  R0               38                294
  R1                1                  7
  R2                0                  4
  RX                3                 15

Clustering(31) Variable = 17Q GAIN MUTATION ANALYSIS
D31V1, survival
                    sevent
clus2                  0   1
  17Q GAIN MUTATED    78  47
  17Q GAIN WILD-TYPE 166  92
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
               125                258 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                47                 92 
$`17Q GAIN MUTATED`
TCGA-18-3407 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 TCGA-18-3417 TCGA-21-1071 
        4.47         4.80        46.52        11.34        24.92        46.88 
TCGA-21-1072 TCGA-21-1075 TCGA-21-1077 TCGA-21-1082 TCGA-21-1083 TCGA-21-5786 
       99.16        70.16        34.78       119.80         8.78        33.93 
TCGA-21-5787 TCGA-22-1012 TCGA-22-1017 TCGA-22-4593 TCGA-22-4599 TCGA-22-4601 
       10.82        14.10        48.82        35.08        38.17        34.75 
TCGA-22-4604 TCGA-22-4613 TCGA-22-5471 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 
       13.12        11.77        31.73        63.55        14.63        44.25 
TCGA-22-5483 TCGA-33-4532 TCGA-33-4538 TCGA-33-4582 TCGA-33-4586 TCGA-33-6738 
       18.84         7.63        97.94       103.53        14.07        27.02 
TCGA-34-2596 TCGA-34-2604 TCGA-34-5231 TCGA-34-5240 TCGA-37-3792 TCGA-37-4133 
        2.63        31.50        50.24        12.00         0.39         7.82 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5027 TCGA-39-5037 TCGA-43-2576 TCGA-43-2578 
       74.07        44.75        60.79        35.70        40.21        22.49 
TCGA-43-5668 TCGA-43-7657 TCGA-43-8118 TCGA-43-A475 TCGA-46-3768 TCGA-46-6025 
       11.47         7.76         2.93         9.73         9.99        10.65 
TCGA-46-6026 TCGA-51-4080 TCGA-52-7812 TCGA-56-1622 TCGA-56-7222 TCGA-56-7223 
       13.91         0.39        27.45        28.96         0.43         0.99 
TCGA-56-7582 TCGA-56-7730 TCGA-56-8504 TCGA-56-8629 TCGA-56-A4BX TCGA-58-8386 
        0.85         0.20         5.85         1.12         1.51         0.03 
TCGA-58-8391 TCGA-58-A46J TCGA-58-A46K TCGA-58-A46M TCGA-58-A46N TCGA-60-2703 
       71.24        64.87        34.36        23.24        17.75        96.82 
TCGA-60-2707 TCGA-60-2715 TCGA-60-2722 TCGA-60-2726 TCGA-66-2742 TCGA-66-2756 
       21.73        35.34        29.85        11.77        21.07         0.99 
TCGA-66-2758 TCGA-66-2763 TCGA-66-2767 TCGA-66-2770 TCGA-66-2773 TCGA-66-2777 
       21.01         0.99         2.01        23.01         3.02         2.01 
TCGA-66-2781 TCGA-66-2787 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-68-7755 
        3.98        40.01         5.03        30.02        10.06         2.73 
TCGA-68-8250 TCGA-68-8251 TCGA-77-6842 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 
        8.02         3.16        29.56        23.28        11.18        89.98 
TCGA-77-7141 TCGA-77-7142 TCGA-77-7465 TCGA-77-8007 TCGA-77-8009 TCGA-77-8128 
        0.49        42.28        15.75         6.51        53.95        37.81 
TCGA-77-8136 TCGA-77-8139 TCGA-77-8156 TCGA-77-A5G3 TCGA-85-6560 TCGA-85-7843 
       39.09       104.09         0.33       117.57         0.36         1.15 
TCGA-85-7844 TCGA-85-8070 TCGA-85-8277 TCGA-85-8350 TCGA-85-8352 TCGA-85-8353 
        1.25        16.77         0.36         1.97         2.20         1.78 
TCGA-85-8354 TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL TCGA-85-A4QR TCGA-90-7767 
        2.01         0.10        15.62         0.49         0.82         2.93 
TCGA-90-7769 TCGA-90-A4ED TCGA-90-A4EE TCGA-92-7340 TCGA-92-7341 TCGA-96-7545 
       11.77         8.02        10.88         2.70         3.48        44.19 
TCGA-96-A4JK TCGA-98-8023 TCGA-J1-A4AH TCGA-L3-A524 TCGA-MF-A522 
        8.98        10.13         7.30        14.76         2.73 

$`17Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3408 TCGA-18-3409 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 
       12.16        81.01        79.46        13.02        59.51        28.34 
TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 
        1.64        43.76         6.15         2.79        90.54         3.02 
TCGA-18-5595 TCGA-21-1070 TCGA-21-1076 TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 
       27.19       119.54        60.89        15.58        31.73       122.43 
TCGA-21-1081 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-A5DI TCGA-22-0940 
        9.34        31.63        88.11        41.69        32.19        19.99 
TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1016 
        7.33        14.93         4.31        64.21         1.74        27.02 
TCGA-22-4591 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4605 TCGA-22-4607 
       20.48        48.33        24.13         0.56        32.02        19.30 
TCGA-22-4609 TCGA-22-5472 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 
        9.57        64.93         0.79        54.28        71.34        79.20 
TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-22-A5C4 
       11.74        30.12        62.86        56.32        16.64         0.95 
TCGA-33-4533 TCGA-33-4547 TCGA-33-4566 TCGA-33-4583 TCGA-33-4587 TCGA-33-4589 
      114.05        43.10       173.82       141.34        54.44        10.82 
TCGA-33-6737 TCGA-34-2600 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5232 
       19.76        61.61        28.96        32.88        31.27        67.79 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
       56.38         9.07        23.24        14.07        30.94        18.15 
TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-4129 TCGA-37-4130 
        4.96         1.12         3.95         0.43         6.58         8.12 
TCGA-37-4132 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 TCGA-39-5021 
        7.46         6.81         0.39         3.39        47.80        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 
       55.20        70.03         1.71        24.33         1.94        27.39 
TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5039 TCGA-39-5040 TCGA-43-2581 
       36.39        15.58        35.64        17.88        17.06        38.66 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       27.02        33.11        18.05        12.36        24.89        10.19 
TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 
        5.46         3.81         6.97        66.51        13.38        11.77 
TCGA-43-A474 TCGA-43-A56U TCGA-43-A56V TCGA-51-4079 TCGA-51-4081 TCGA-52-7622 
       11.61        14.20        12.03         0.39        29.95        17.79 
TCGA-52-7809 TCGA-52-7810 TCGA-52-7811 TCGA-56-5897 TCGA-56-5898 TCGA-56-6545 
        5.46        30.35         8.75         0.10        18.25         2.04 
TCGA-56-6546 TCGA-56-7221 TCGA-56-7579 TCGA-56-7580 TCGA-56-7822 TCGA-56-8503 
        0.62         0.99         1.45         1.32         0.03         1.35 
TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 TCGA-56-A49D 
        1.81         1.18         2.07         0.56         0.53         1.25 
TCGA-56-A4BW TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DR TCGA-56-A5DS 
        0.07         0.99         0.82         0.13         0.13         0.26 
TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 TCGA-58-8392 TCGA-58-8393 TCGA-58-A46L 
       13.25        12.43        29.95        16.47        34.78        36.59 
TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2704 TCGA-60-2706 
       21.11         3.58        12.23        10.22        37.94        92.71 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 
       80.45        49.48        66.54        41.42         9.01        56.91 
TCGA-60-2714 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2723 
       50.33        48.49        42.64         3.19        32.32        35.90 
TCGA-60-2724 TCGA-60-2725 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2744 
       23.57        26.83        16.96        43.10         2.01         0.99 
TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2757 TCGA-66-2759 TCGA-66-2765 
        1.02         2.01         0.92         0.99        25.05         2.01 
TCGA-66-2766 TCGA-66-2768 TCGA-66-2769 TCGA-66-2771 TCGA-66-2778 TCGA-66-2780 
        1.02         2.01         7.07        19.00        19.00        12.03 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2788 TCGA-66-2789 
       12.00        24.95         1.97        25.97        22.98         4.04 
TCGA-66-2790 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7756 TCGA-68-7757 
       22.98        54.08         4.01        49.05         6.64         6.94 
TCGA-68-A59I TCGA-68-A59J TCGA-77-6843 TCGA-77-6844 TCGA-77-7140 TCGA-77-7335 
        3.98         3.42        73.12        75.09        20.78        70.13 
TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-8008 TCGA-77-8130 TCGA-77-8131 
      106.95         0.16        46.78        86.76        82.92        12.59 
TCGA-77-8133 TCGA-77-8138 TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 
       53.92        17.72        11.54        26.40        27.39         6.97 
TCGA-77-8148 TCGA-77-8150 TCGA-77-8153 TCGA-77-8154 TCGA-77-A5FZ TCGA-77-A5GB 
        9.63        54.41        55.36        35.90       126.18        30.81 
TCGA-77-A5GH TCGA-85-6175 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 
       23.44         9.67        12.99         1.12         0.59         0.33 
TCGA-85-7698 TCGA-85-7699 TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 
        1.61         0.03         1.97         0.85         1.97         0.53 
TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8287 TCGA-85-8288 TCGA-85-8351 
       14.07        16.87         0.43         1.45         1.78         1.81 
TCGA-85-8355 TCGA-85-8479 TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 TCGA-85-A50M 
        2.01         0.72         0.69        14.63        13.94         0.62 
TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 TCGA-90-7766 TCGA-90-7964 TCGA-92-8063 
        0.79         0.43        24.92         9.50        14.07         4.01 
TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 
        5.26         2.30         2.86         0.16        11.70        39.88 
TCGA-96-8169 TCGA-96-8170 TCGA-96-A4JL TCGA-98-7454 TCGA-98-8020 TCGA-98-8021 
        6.21         6.94         6.02         8.42         2.76        13.58 
TCGA-98-8022 TCGA-L3-A4E7 TCGA-LA-A446 TCGA-NC-A5HE TCGA-NC-A5HG TCGA-NC-A5HI 
        7.36         1.15         1.18        56.61        50.89        37.32 

  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
              0.03               0.03 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
            119.80             173.82 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
             12.00              13.76 
[1] "0.0 - 119.8 (12.0)" "0.0 - 173.8 (13.8)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
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  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
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  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
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  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-56-A49D         TCGA-56-A4BW         TCGA-56-A4BX 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-56-A4BY         TCGA-56-A4ZJ         TCGA-56-A4ZK 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-56-A5DR         TCGA-56-A5DS         TCGA-58-8386 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-68-A59I 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-68-A59J         TCGA-77-6842         TCGA-77-6843 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8153         TCGA-77-8154 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5FZ         TCGA-77-A5G3 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-77-A5GB         TCGA-77-A5GH         TCGA-85-6175 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D31V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  17Q GAIN MUTATED         0       15       40        0        21        26
  17Q GAIN WILD-TYPE       1       54       96        1        29        44
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  17Q GAIN MUTATED           17          6        3
  17Q GAIN WILD-TYPE         37         14        2
D31V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  17Q GAIN MUTATED    21  89  14   5
  17Q GAIN WILD-TYPE  74 161  31  14
D31V4, multiclass
    clus
vv   17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  T1               21                 74
  T2               89                161
  T3               14                 31
  T4                5                 14
                    vv
clus                  N0  N1  N2  N3
  17Q GAIN MUTATED    71  45  10   2
  17Q GAIN WILD-TYPE 184  64  24   3
D31V5, multiclass
    clus
vv   17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  N0               71                184
  N1               45                 64
  N2               10                 24
  N3                2                  3
                    vv
clus                  M0  M1  MX
  17Q GAIN MUTATED   108   3  16
  17Q GAIN WILD-TYPE 241   2  33
D31V6, multiclass
    clus
vv   17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  M0              108                241
  M1                3                  2
  MX               16                 33
D31V7, binary
                    cls
clus                   0   1
  17Q GAIN MUTATED    20 109
  17Q GAIN WILD-TYPE  84 196
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q GAIN MUTATED     20  109
  17Q GAIN WILD-TYPE   84  196
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  FEMALE               20                 84
  MALE                109                196
D31V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  17Q GAIN MUTATED                                       5
  17Q GAIN WILD-TYPE                                     7
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  17Q GAIN MUTATED                                        1
  17Q GAIN WILD-TYPE                                      5
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  17Q GAIN MUTATED                                         0
  17Q GAIN WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  17Q GAIN MUTATED                                                           123
  17Q GAIN WILD-TYPE                                                         267
D31V9, multiclass
                                                             clus
vv                                                            17Q GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      5
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              123
                                                             clus
vv                                                            17Q GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                        7
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                267
D31V10, binary
                    cls
clus                   0   1
  17Q GAIN MUTATED     5 124
  17Q GAIN WILD-TYPE   8 272
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q GAIN MUTATED      5  124
  17Q GAIN WILD-TYPE    8  272
     clus
vv    17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  NO                 5                  8
  YES              124                272
D31V11, continuous
D31V12, continuous
                    vv
clus                  R0  R1  R2  RX
  17Q GAIN MUTATED   104   3   2   4
  17Q GAIN WILD-TYPE 228   5   2  14
D31V13, multiclass
    clus
vv   17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  R0              104                228
  R1                3                  5
  R2                2                  2
  RX                4                 14

Clustering(32) Variable = 18P GAIN MUTATION ANALYSIS
D32V1, survival
                    sevent
clus2                  0   1
  18P GAIN MUTATED    80  41
  18P GAIN WILD-TYPE 164  98
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
               121                262 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                41                 98 
$`18P GAIN MUTATED`
TCGA-18-3407 TCGA-18-3411 TCGA-18-3412 TCGA-18-3416 TCGA-18-4083 TCGA-21-1075 
        4.47        46.52        11.34        28.34         6.15        70.16 
TCGA-21-1079 TCGA-21-1082 TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 TCGA-22-0944 
       31.73       119.80        88.11        41.69        33.93         7.33 
TCGA-22-4591 TCGA-22-4595 TCGA-22-4604 TCGA-22-4613 TCGA-22-5471 TCGA-22-5480 
       20.48        24.13        13.12        11.77        31.73        71.34 
TCGA-22-5483 TCGA-22-5489 TCGA-22-5491 TCGA-33-4532 TCGA-33-4566 TCGA-33-4586 
       18.84        62.86        56.32         7.63       173.82        14.07 
TCGA-34-2596 TCGA-34-2604 TCGA-34-5231 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 
        2.63        31.50        50.24         9.07        23.24        12.00 
TCGA-37-3792 TCGA-37-4141 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5027 
        0.39         0.39        74.07        44.75        68.58        60.79 
TCGA-39-5029 TCGA-39-5031 TCGA-39-5037 TCGA-39-5040 TCGA-43-2576 TCGA-43-2578 
       24.33        27.39        35.70        17.06        40.21        22.49 
TCGA-43-5670 TCGA-43-6143 TCGA-43-7657 TCGA-43-7658 TCGA-43-8118 TCGA-43-A474 
       18.05        12.36         7.76        66.51         2.93        11.61 
TCGA-43-A475 TCGA-46-6026 TCGA-51-4081 TCGA-52-7811 TCGA-56-5898 TCGA-56-7223 
        9.73        13.91        29.95         8.75        18.25         0.99 
TCGA-56-7580 TCGA-56-7730 TCGA-56-A49D TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A5DR 
        1.32         0.20         1.25         1.51         0.99         0.13 
TCGA-56-A5DS TCGA-58-8386 TCGA-58-8391 TCGA-58-8392 TCGA-58-A46N TCGA-60-2698 
        0.26         0.03        71.24        16.47        17.75        10.22 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2722 TCGA-60-2725 TCGA-60-2726 TCGA-66-2734 
       41.42         9.01        29.85        26.83        11.77        43.10 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2767 TCGA-66-2769 TCGA-66-2770 TCGA-66-2777 
       21.01        25.05         2.01         7.07        23.01         2.01 
TCGA-66-2783 TCGA-66-2787 TCGA-66-2793 TCGA-66-2794 TCGA-66-2800 TCGA-68-7755 
       24.95        40.01        10.06        54.08        49.05         2.73 
TCGA-68-A59J TCGA-77-6845 TCGA-77-7335 TCGA-77-7463 TCGA-77-7465 TCGA-77-8009 
        3.42        23.28        70.13        46.78        15.75        53.95 
TCGA-77-8128 TCGA-77-8130 TCGA-77-8143 TCGA-77-8150 TCGA-77-8153 TCGA-77-8156 
       37.81        82.92        26.40        54.41        55.36         0.33 
TCGA-77-A5G3 TCGA-85-6561 TCGA-85-6798 TCGA-85-7843 TCGA-85-7844 TCGA-85-8049 
      117.57        12.99         1.12         1.15         1.25         1.97 
TCGA-85-8070 TCGA-85-8071 TCGA-85-8276 TCGA-85-8277 TCGA-85-8352 TCGA-85-8353 
       16.77        14.07         0.43         0.36         2.20         1.78 
TCGA-85-8354 TCGA-85-8664 TCGA-85-8666 TCGA-85-A50M TCGA-90-7769 TCGA-90-A4EE 
        2.01         0.10        15.62         0.62        11.77        10.88 
TCGA-92-8064 TCGA-96-7545 TCGA-98-8021 TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-L3-A524 
        5.26        44.19        13.58         7.30         1.15        14.76 
TCGA-NC-A5HI 
       37.32 

$`18P GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3414 TCGA-18-3415 
       12.16        81.01        79.46         4.80        13.02        59.51 
TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 
       24.92         1.64        43.76         2.79        90.54         3.02 
TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 TCGA-21-1076 TCGA-21-1077 
       27.19       119.54        46.88        99.16        60.89        34.78 
TCGA-21-1078 TCGA-21-1080 TCGA-21-1081 TCGA-21-1083 TCGA-21-5782 TCGA-21-5787 
       15.58       122.43         9.34         8.78        31.63        10.82 
TCGA-21-A5DI TCGA-22-0940 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 
       32.19        19.99        14.93         4.31        64.21         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4593 TCGA-22-4594 TCGA-22-4596 
       14.10        27.02        48.82        35.08        48.33         0.56 
TCGA-22-4599 TCGA-22-4601 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-5472 
       38.17        34.75        32.02        19.30         9.57        64.93 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5481 
       63.55        14.63        44.25         0.79        54.28        79.20 
TCGA-22-5482 TCGA-22-5485 TCGA-22-5492 TCGA-22-A5C4 TCGA-33-4533 TCGA-33-4538 
       11.74        30.12        16.64         0.95       114.05        97.94 
TCGA-33-4547 TCGA-33-4582 TCGA-33-4583 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 
       43.10       103.53       141.34        54.44        10.82        19.76 
TCGA-33-6738 TCGA-34-2600 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5232 
       27.02        61.61        28.96        32.88        31.27        67.79 
TCGA-34-5234 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 
       56.38        14.07        30.94        18.15         4.96         1.12 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 
        3.95         0.43         6.58         8.12         7.46         7.82 
TCGA-37-4135 TCGA-37-5819 TCGA-39-5011 TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 
        6.81         3.39        47.80        55.20        70.03         1.71 
TCGA-39-5030 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5039 TCGA-43-2581 
        1.94        36.39        15.58        35.64        17.88        38.66 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 
       27.02        33.11        11.47        24.89        10.19         5.46 
TCGA-43-6773 TCGA-43-7656 TCGA-43-8115 TCGA-43-8116 TCGA-43-A56U TCGA-43-A56V 
        3.81         6.97        13.38        11.77        14.20        12.03 
TCGA-46-3768 TCGA-46-6025 TCGA-51-4079 TCGA-51-4080 TCGA-52-7622 TCGA-52-7809 
        9.99        10.65         0.39         0.39        17.79         5.46 
TCGA-52-7810 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
       30.35        27.45        28.96         0.10         2.04         0.62 
TCGA-56-7221 TCGA-56-7222 TCGA-56-7579 TCGA-56-7582 TCGA-56-7822 TCGA-56-8503 
        0.99         0.43         1.45         0.85         0.03         1.35 
TCGA-56-8504 TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 
        5.85         1.81         1.18         2.07         0.56         0.53 
TCGA-56-8629 TCGA-56-A4BW TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-58-8387 TCGA-58-8388 
        1.12         0.07         0.82         0.13        13.25        12.43 
TCGA-58-8390 TCGA-58-8393 TCGA-58-A46J TCGA-58-A46K TCGA-58-A46L TCGA-58-A46M 
       29.95        34.78        64.87        34.36        36.59        23.24 
TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 
       21.11         3.58        12.23        96.82        37.94        92.71 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2713 TCGA-60-2714 
       21.73        80.45        49.48        66.54        56.91        50.33 
TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2723 
       35.34        48.49        42.64         3.19        32.32        35.90 
TCGA-60-2724 TCGA-66-2727 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 
       23.57        16.96         2.01        21.07         0.99         1.02 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2763 TCGA-66-2765 
        2.01         0.92         0.99         0.99         0.99         2.01 
TCGA-66-2766 TCGA-66-2768 TCGA-66-2771 TCGA-66-2773 TCGA-66-2778 TCGA-66-2780 
        1.02         2.01        19.00         3.02        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2785 TCGA-66-2786 TCGA-66-2788 TCGA-66-2789 
        3.98        12.00         1.97        25.97        22.98         4.04 
TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2795 TCGA-68-7756 TCGA-68-7757 
       22.98         5.03        30.02         4.01         6.64         6.94 
TCGA-68-8250 TCGA-68-8251 TCGA-68-A59I TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 
        8.02         3.16         3.98        29.56        73.12        75.09 
TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7337 
       11.18        89.98        20.78         0.49        42.28       106.95 
TCGA-77-7338 TCGA-77-8007 TCGA-77-8008 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 
        0.16         6.51        86.76        12.59        53.92        39.09 
TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 
       17.72       104.09        11.54        27.39         6.97         9.63 
TCGA-77-8154 TCGA-77-A5FZ TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6175 TCGA-85-6560 
       35.90       126.18        30.81        23.44         9.67         0.36 
TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7950 TCGA-85-8048 
        0.59         0.33         1.61         0.03         1.97         0.85 
TCGA-85-8052 TCGA-85-8072 TCGA-85-8287 TCGA-85-8288 TCGA-85-8350 TCGA-85-8351 
        0.53        16.87         1.45         1.78         1.97         1.81 
TCGA-85-8355 TCGA-85-8479 TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 TCGA-85-A4CL 
        2.01         0.72         0.69        14.63        13.94         0.49 
TCGA-85-A4QR TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 
        0.82         0.79         0.43        24.92         9.50         2.93 
TCGA-90-7964 TCGA-90-A4ED TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8065 
       14.07         8.02         2.70         3.48         4.01         2.30 
TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 TCGA-96-8169 TCGA-96-8170 
        2.86         0.16        11.70        39.88         6.21         6.94 
TCGA-96-A4JK TCGA-96-A4JL TCGA-98-7454 TCGA-98-8020 TCGA-98-8022 TCGA-98-8023 
        8.98         6.02         8.42         2.76         7.36        10.13 
TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HG 
        1.18         2.73        56.61        50.89 

  18P GAIN MUTATED 18P GAIN WILD-TYPE 
              0.03               0.03 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
            173.82             141.34 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
            15.750             12.095 
[1] "0.0 - 173.8 (15.8)" "0.0 - 141.3 (12.1)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56U 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-43-A56V         TCGA-46-3768         TCGA-46-6025 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-46-6026         TCGA-51-4079         TCGA-51-4080 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-51-4081         TCGA-52-7622         TCGA-52-7809 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-52-7810         TCGA-52-7811         TCGA-52-7812 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-5898 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-56-A49D         TCGA-56-A4BW         TCGA-56-A4BX 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-56-A4BY         TCGA-56-A4ZJ         TCGA-56-A4ZK 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-56-A5DR         TCGA-56-A5DS         TCGA-58-8386 
  "18P GAIN MUTATED"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-68-A59I 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-68-A59J         TCGA-77-6842         TCGA-77-6843 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8153         TCGA-77-8154 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5FZ         TCGA-77-A5G3 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-77-A5GB         TCGA-77-A5GH         TCGA-85-6175 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
  "18P GAIN MUTATED"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56U 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-43-A56V         TCGA-46-3768         TCGA-46-6025 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-46-6026         TCGA-51-4079         TCGA-51-4080 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-51-4081         TCGA-52-7622         TCGA-52-7809 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-52-7810         TCGA-52-7811         TCGA-52-7812 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-5898 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-56-A49D         TCGA-56-A4BW         TCGA-56-A4BX 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-56-A4BY         TCGA-56-A4ZJ         TCGA-56-A4ZK 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-56-A5DR         TCGA-56-A5DS         TCGA-58-8386 
  "18P GAIN MUTATED"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-68-A59I 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-68-A59J         TCGA-77-6842         TCGA-77-6843 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8153         TCGA-77-8154 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5FZ         TCGA-77-A5G3 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-77-A5GB         TCGA-77-A5GH         TCGA-85-6175 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
  "18P GAIN MUTATED"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56U 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-43-A56V         TCGA-46-3768         TCGA-46-6025 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-46-6026         TCGA-51-4079         TCGA-51-4080 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-51-4081         TCGA-52-7622         TCGA-52-7809 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-52-7810         TCGA-52-7811         TCGA-52-7812 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-5898 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-56-A49D         TCGA-56-A4BW         TCGA-56-A4BX 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-56-A4BY         TCGA-56-A4ZJ         TCGA-56-A4ZK 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-56-A5DR         TCGA-56-A5DS         TCGA-58-8386 
  "18P GAIN MUTATED"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-68-A59I 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-68-A59J         TCGA-77-6842         TCGA-77-6843 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8153         TCGA-77-8154 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5FZ         TCGA-77-A5G3 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-77-A5GB         TCGA-77-A5GH         TCGA-85-6175 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
  "18P GAIN MUTATED"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
[1] "hr=" "1.2"
D32V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  18P GAIN MUTATED         0       18       42        0        18        22
  18P GAIN WILD-TYPE       1       51       94        1        32        48
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  18P GAIN MUTATED           19          9        1
  18P GAIN WILD-TYPE         35         11        4
D32V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  18P GAIN MUTATED    24  82  17   6
  18P GAIN WILD-TYPE  71 168  28  13
D32V4, multiclass
    clus
vv   18P GAIN MUTATED 18P GAIN WILD-TYPE
  T1               24                 71
  T2               82                168
  T3               17                 28
  T4                6                 13
                    vv
clus                  N0  N1  N2  N3
  18P GAIN MUTATED    74  37  14   2
  18P GAIN WILD-TYPE 181  72  20   3
D32V5, multiclass
    clus
vv   18P GAIN MUTATED 18P GAIN WILD-TYPE
  N0               74                181
  N1               37                 72
  N2               14                 20
  N3                2                  3
                    vv
clus                  M0  M1  MX
  18P GAIN MUTATED   114   1  13
  18P GAIN WILD-TYPE 235   4  36
D32V6, multiclass
    clus
vv   18P GAIN MUTATED 18P GAIN WILD-TYPE
  M0              114                235
  M1                1                  4
  MX               13                 36
D32V7, binary
                    cls
clus                   0   1
  18P GAIN MUTATED    28 101
  18P GAIN WILD-TYPE  76 204
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P GAIN MUTATED     28  101
  18P GAIN WILD-TYPE   76  204
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  FEMALE               28                 76
  MALE                101                204
D32V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  18P GAIN MUTATED                                       4
  18P GAIN WILD-TYPE                                     8
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  18P GAIN MUTATED                                        1
  18P GAIN WILD-TYPE                                      5
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  18P GAIN MUTATED                                         0
  18P GAIN WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  18P GAIN MUTATED                                                           124
  18P GAIN WILD-TYPE                                                         266
D32V9, multiclass
                                                             clus
vv                                                            18P GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      4
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              124
                                                             clus
vv                                                            18P GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                        8
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                266
D32V10, binary
                    cls
clus                   0   1
  18P GAIN MUTATED     7 122
  18P GAIN WILD-TYPE   6 274
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P GAIN MUTATED      7  122
  18P GAIN WILD-TYPE    6  274
     clus
vv    18P GAIN MUTATED 18P GAIN WILD-TYPE
  NO                 7                  6
  YES              122                274
D32V11, continuous
D32V12, continuous
                    vv
clus                  R0  R1  R2  RX
  18P GAIN MUTATED   105   2   3   6
  18P GAIN WILD-TYPE 227   6   1  12
D32V13, multiclass
    clus
vv   18P GAIN MUTATED 18P GAIN WILD-TYPE
  R0              105                227
  R1                2                  6
  R2                3                  1
  RX                6                 12

Clustering(33) Variable = 18Q GAIN MUTATION ANALYSIS
D33V1, survival
                    sevent
clus2                  0   1
  18Q GAIN MUTATED    57  35
  18Q GAIN WILD-TYPE 187 104
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                92                291 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                35                104 
$`18Q GAIN MUTATED`
TCGA-18-3407 TCGA-18-3411 TCGA-18-4083 TCGA-21-1075 TCGA-21-1082 TCGA-21-5783 
        4.47        46.52         6.15        70.16       119.80        88.11 
TCGA-21-5784 TCGA-22-1012 TCGA-22-4595 TCGA-22-4604 TCGA-22-4613 TCGA-22-5471 
       41.69        14.10        24.13        13.12        11.77        31.73 
TCGA-22-5478 TCGA-22-5480 TCGA-22-5481 TCGA-22-5483 TCGA-22-5489 TCGA-22-5491 
        0.79        71.34        79.20        18.84        62.86        56.32 
TCGA-33-4532 TCGA-33-4566 TCGA-33-4582 TCGA-33-4586 TCGA-34-2596 TCGA-34-2604 
        7.63       173.82       103.53        14.07         2.63        31.50 
TCGA-34-2609 TCGA-34-5236 TCGA-34-5239 TCGA-37-4141 TCGA-39-5016 TCGA-39-5019 
       31.27         9.07        23.24         0.39        74.07        44.75 
TCGA-39-5021 TCGA-39-5029 TCGA-39-5031 TCGA-39-5037 TCGA-39-5040 TCGA-43-2578 
       68.58        24.33        27.39        35.70        17.06        22.49 
TCGA-43-3920 TCGA-43-6143 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-A475 
       33.11        12.36         7.76        66.51        13.38         9.73 
TCGA-46-6026 TCGA-51-4081 TCGA-52-7811 TCGA-56-5898 TCGA-56-7580 TCGA-56-7730 
       13.91        29.95         8.75        18.25         1.32         0.20 
TCGA-56-A49D TCGA-56-A4BX TCGA-58-8392 TCGA-58-A46N TCGA-60-2695 TCGA-60-2711 
        1.25         1.51        16.47        17.75        21.11        41.42 
TCGA-60-2712 TCGA-60-2722 TCGA-60-2725 TCGA-66-2758 TCGA-66-2759 TCGA-66-2769 
        9.01        29.85        26.83        21.01        25.05         7.07 
TCGA-66-2770 TCGA-66-2777 TCGA-66-2787 TCGA-66-2793 TCGA-66-2794 TCGA-66-2800 
       23.01         2.01        40.01        10.06        54.08        49.05 
TCGA-68-7755 TCGA-77-7463 TCGA-77-7465 TCGA-77-8009 TCGA-77-8128 TCGA-77-8143 
        2.73        46.78        15.75        53.95        37.81        26.40 
TCGA-77-8150 TCGA-77-8153 TCGA-77-8156 TCGA-85-6561 TCGA-85-6798 TCGA-85-7843 
       54.41        55.36         0.33        12.99         1.12         1.15 
TCGA-85-7950 TCGA-85-8070 TCGA-85-8071 TCGA-85-8277 TCGA-85-8664 TCGA-85-8666 
        1.97        16.77        14.07         0.36         0.10        15.62 
TCGA-85-A50M TCGA-90-A4EE TCGA-92-8064 TCGA-96-7545 TCGA-98-8021 TCGA-J1-A4AH 
        0.62        10.88         5.26        44.19        13.58         7.30 
TCGA-L3-A4E7 TCGA-MF-A522 
        1.15         2.73 

$`18Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3412 TCGA-18-3414 
       12.16        81.01        79.46         4.80        11.34        13.02 
TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4086 
       59.51        28.34        24.92         1.64        43.76         2.79 
TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 
       90.54         3.02        27.19       119.54        46.88        99.16 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 
       60.89        34.78        15.58        31.73       122.43         9.34 
TCGA-21-1083 TCGA-21-5782 TCGA-21-5786 TCGA-21-5787 TCGA-21-A5DI TCGA-22-0940 
        8.78        31.63        33.93        10.82        32.19        19.99 
TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1016 
        7.33        14.93         4.31        64.21         1.74        27.02 
TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4596 TCGA-22-4599 
       48.82        20.48        35.08        48.33         0.56        38.17 
TCGA-22-4601 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-5472 TCGA-22-5473 
       34.75        32.02        19.30         9.57        64.93        63.55 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5479 TCGA-22-5482 TCGA-22-5485 TCGA-22-5492 
       14.63        44.25        54.28        11.74        30.12        16.64 
TCGA-22-A5C4 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4583 TCGA-33-4587 
        0.95       114.05        97.94        43.10       141.34        54.44 
TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2600 TCGA-34-2605 TCGA-34-2608 
       10.82        19.76        27.02        61.61        28.96        32.88 
TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 
       50.24        67.79        56.38        12.00        14.07        30.94 
TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 
       18.15         4.96         1.12         3.95         0.43         0.39 
TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-5819 
        6.58         8.12         7.46         7.82         6.81         3.39 
TCGA-39-5011 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5030 
       47.80        55.20        70.03        60.79         1.71         1.94 
TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5039 TCGA-43-2576 TCGA-43-2581 
       36.39        15.58        35.64        17.88        40.21        38.66 
TCGA-43-3394 TCGA-43-5668 TCGA-43-5670 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 
       27.02        11.47        18.05        24.89        10.19         5.46 
TCGA-43-6773 TCGA-43-7656 TCGA-43-8116 TCGA-43-8118 TCGA-43-A474 TCGA-43-A56U 
        3.81         6.97        11.77         2.93        11.61        14.20 
TCGA-43-A56V TCGA-46-3768 TCGA-46-6025 TCGA-51-4079 TCGA-51-4080 TCGA-52-7622 
       12.03         9.99        10.65         0.39         0.39        17.79 
TCGA-52-7809 TCGA-52-7810 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        5.46        30.35        27.45        28.96         0.10         2.04 
TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7582 
        0.62         0.99         0.43         0.99         1.45         0.85 
TCGA-56-7822 TCGA-56-8503 TCGA-56-8504 TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 
        0.03         1.35         5.85         1.81         1.18         2.07 
TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 TCGA-56-A4BW TCGA-56-A4BY TCGA-56-A4ZJ 
        0.56         0.53         1.12         0.07         0.99         0.82 
TCGA-56-A4ZK TCGA-56-A5DR TCGA-56-A5DS TCGA-58-8386 TCGA-58-8387 TCGA-58-8388 
        0.13         0.13         0.26         0.03        13.25        12.43 
TCGA-58-8390 TCGA-58-8391 TCGA-58-8393 TCGA-58-A46J TCGA-58-A46K TCGA-58-A46L 
       29.95        71.24        34.78        64.87        34.36        36.59 
TCGA-58-A46M TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 
       23.24         3.58        12.23        10.22        96.82        37.94 
TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2713 
       92.71        21.73        80.45        49.48        66.54        56.91 
TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
       50.33        35.34        48.49        42.64         3.19        32.32 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 
       35.90        23.57        11.77        16.96        43.10         2.01 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       21.07         0.99         1.02         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
        0.99         0.99         2.01         1.02         2.01         2.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
       19.00         3.02        19.00        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 
       24.95         1.97        25.97        22.98         4.04        22.98 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2795 TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 
        5.03        30.02         4.01         6.64         6.94         8.02 
TCGA-68-8251 TCGA-68-A59I TCGA-68-A59J TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 
        3.16         3.98         3.42        29.56        73.12        75.09 
TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 
       23.28        11.18        89.98        20.78         0.49        42.28 
TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-8007 TCGA-77-8008 TCGA-77-8130 
       70.13       106.95         0.16         6.51        86.76        82.92 
TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 
       12.59        53.92        39.09        17.72       104.09        11.54 
TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8154 TCGA-77-A5FZ TCGA-77-A5G3 
       27.39         6.97         9.63        35.90       126.18       117.57 
TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6175 TCGA-85-6560 TCGA-85-7696 TCGA-85-7697 
       30.81        23.44         9.67         0.36         0.59         0.33 
TCGA-85-7698 TCGA-85-7699 TCGA-85-7844 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 
        1.61         0.03         1.25         0.85         1.97         0.53 
TCGA-85-8072 TCGA-85-8276 TCGA-85-8287 TCGA-85-8288 TCGA-85-8350 TCGA-85-8351 
       16.87         0.43         1.45         1.78         1.97         1.81 
TCGA-85-8352 TCGA-85-8353 TCGA-85-8354 TCGA-85-8355 TCGA-85-8479 TCGA-85-8481 
        2.20         1.78         2.01         2.01         0.72         0.69 
TCGA-85-8580 TCGA-85-8582 TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A513 TCGA-85-A53L 
       14.63        13.94         0.49         0.82         0.79         0.43 
TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 TCGA-90-7964 TCGA-90-A4ED 
       24.92         9.50         2.93        11.77        14.07         8.02 
TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 
        2.70         3.48         4.01         2.30         2.86         0.16 
TCGA-94-7943 TCGA-96-7544 TCGA-96-8169 TCGA-96-8170 TCGA-96-A4JK TCGA-96-A4JL 
       11.70        39.88         6.21         6.94         8.98         6.02 
TCGA-98-7454 TCGA-98-8020 TCGA-98-8022 TCGA-98-8023 TCGA-L3-A524 TCGA-LA-A446 
        8.42         2.76         7.36        10.13        14.76         1.18 
TCGA-NC-A5HE TCGA-NC-A5HG TCGA-NC-A5HI 
       56.61        50.89        37.32 

  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
              0.10               0.03 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
            173.82             141.34 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
            17.405             11.770 
[1] "0.1 - 173.8 (17.4)" "0.0 - 141.3 (11.8)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED"   "18Q GAIN MUTATED" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED"   "18Q GAIN MUTATED" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
  "18Q GAIN MUTATED"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED"   "18Q GAIN MUTATED" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
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"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-56-A49D         TCGA-56-A4BW         TCGA-56-A4BX 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-56-A4BY         TCGA-56-A4ZJ         TCGA-56-A4ZK 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-56-A5DR         TCGA-56-A5DS         TCGA-58-8386 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED"   "18Q GAIN MUTATED" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED"   "18Q GAIN MUTATED" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED"   "18Q GAIN MUTATED" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-68-A59I 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-68-A59J         TCGA-77-6842         TCGA-77-6843 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED"   "18Q GAIN MUTATED" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8153         TCGA-77-8154 
  "18Q GAIN MUTATED"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5FZ         TCGA-77-A5G3 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-77-A5GB         TCGA-77-A5GH         TCGA-85-6175 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED"   "18Q GAIN MUTATED" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED"   "18Q GAIN MUTATED" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
  "18Q GAIN MUTATED"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
  "18Q GAIN MUTATED"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D33V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  18Q GAIN MUTATED         0       16       35        0        14        15
  18Q GAIN WILD-TYPE       1       53      101        1        36        55
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  18Q GAIN MUTATED           11          6        0
  18Q GAIN WILD-TYPE         43         14        5
D33V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  18Q GAIN MUTATED    21  64   7   5
  18Q GAIN WILD-TYPE  74 186  38  14
D33V4, multiclass
    clus
vv   18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  T1               21                 74
  T2               64                186
  T3                7                 38
  T4                5                 14
                    vv
clus                  N0  N1  N2  N3
  18Q GAIN MUTATED    59  27  10   0
  18Q GAIN WILD-TYPE 196  82  24   5
D33V5, multiclass
    clus
vv   18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  N0               59                196
  N1               27                 82
  N2               10                 24
  N3                0                  5
                    vv
clus                  M0  M1  MX
  18Q GAIN MUTATED    87   0   9
  18Q GAIN WILD-TYPE 262   5  40
D33V6, multiclass
    clus
vv   18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  M0               87                262
  M1                0                  5
  MX                9                 40
D33V7, binary
                    cls
clus                   0   1
  18Q GAIN MUTATED    21  76
  18Q GAIN WILD-TYPE  83 229
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q GAIN MUTATED     21   76
  18Q GAIN WILD-TYPE   83  229
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  FEMALE               21                 83
  MALE                 76                229
D33V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  18Q GAIN MUTATED                                       4
  18Q GAIN WILD-TYPE                                     8
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  18Q GAIN MUTATED                                        0
  18Q GAIN WILD-TYPE                                      6
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  18Q GAIN MUTATED                                         0
  18Q GAIN WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  18Q GAIN MUTATED                                                            93
  18Q GAIN WILD-TYPE                                                         297
D33V9, multiclass
                                                             clus
vv                                                            18Q GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      4
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     0
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               93
                                                             clus
vv                                                            18Q GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                        8
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       6
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                297
D33V10, binary
                    cls
clus                   0   1
  18Q GAIN MUTATED     6  91
  18Q GAIN WILD-TYPE   7 305
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q GAIN MUTATED      6   91
  18Q GAIN WILD-TYPE    7  305
     clus
vv    18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  NO                 6                  7
  YES               91                305
D33V11, continuous
D33V12, continuous
                    vv
clus                  R0  R1  R2  RX
  18Q GAIN MUTATED    80   2   2   3
  18Q GAIN WILD-TYPE 252   6   2  15
D33V13, multiclass
    clus
vv   18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  R0               80                252
  R1                2                  6
  R2                2                  2
  RX                3                 15

Clustering(34) Variable = 19P GAIN MUTATION ANALYSIS
D34V1, survival
                    sevent
clus2                  0   1
  19P GAIN MUTATED    51  36
  19P GAIN WILD-TYPE 193 103
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                87                296 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                36                103 
$`19P GAIN MUTATED`
TCGA-18-3407 TCGA-18-3410 TCGA-18-3411 TCGA-18-3421 TCGA-21-5787 TCGA-22-1011 
        4.47         4.80        46.52        43.76        10.82         1.74 
TCGA-22-1012 TCGA-22-4593 TCGA-22-4595 TCGA-22-4604 TCGA-22-5471 TCGA-22-5474 
       14.10        35.08        24.13        13.12        31.73        14.63 
TCGA-22-5477 TCGA-22-5481 TCGA-22-5483 TCGA-22-5489 TCGA-33-4533 TCGA-33-4538 
       44.25        79.20        18.84        62.86       114.05        97.94 
TCGA-33-4566 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2605 
      173.82        14.07        19.76         2.63        61.61        28.96 
TCGA-34-5231 TCGA-34-5239 TCGA-34-5240 TCGA-34-7107 TCGA-39-5016 TCGA-39-5019 
       50.24        23.24        12.00         1.12        74.07        44.75 
TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5040 TCGA-43-6143 TCGA-43-7657 
       27.39        36.39        15.58        17.06        12.36         7.76 
TCGA-43-A475 TCGA-46-3768 TCGA-52-7809 TCGA-56-6546 TCGA-56-7580 TCGA-56-7582 
        9.73         9.99         5.46         0.62         1.32         0.85 
TCGA-58-8393 TCGA-58-A46M TCGA-58-A46N TCGA-60-2695 TCGA-60-2704 TCGA-60-2708 
       34.78        23.24        17.75        21.11        37.94        80.45 
TCGA-60-2712 TCGA-60-2719 TCGA-66-2770 TCGA-66-2777 TCGA-66-2787 TCGA-66-2794 
        9.01        42.64        23.01         2.01        40.01        54.08 
TCGA-66-2800 TCGA-68-8251 TCGA-68-A59J TCGA-77-6843 TCGA-77-7139 TCGA-77-7141 
       49.05         3.16         3.42        73.12        89.98         0.49 
TCGA-77-7142 TCGA-77-7465 TCGA-77-8008 TCGA-77-8009 TCGA-77-8148 TCGA-77-8150 
       42.28        15.75        86.76        53.95         9.63        54.41 
TCGA-77-A5G3 TCGA-85-6175 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7843 
      117.57         9.67        12.99         1.12         0.59         1.15 
TCGA-85-7950 TCGA-85-8277 TCGA-85-8353 TCGA-85-8354 TCGA-85-8479 TCGA-85-A4QR 
        1.97         0.36         1.78         2.01         0.72         0.82 
TCGA-90-7769 TCGA-90-A4EE TCGA-92-7340 TCGA-92-8064 TCGA-96-7545 TCGA-96-A4JK 
       11.77        10.88         2.70         5.26        44.19         8.98 
TCGA-98-8020 TCGA-J1-A4AH TCGA-LA-A446 
        2.76         7.30         1.18 

$`19P GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3408 TCGA-18-3409 TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 
       12.16        81.01        79.46        11.34        13.02        59.51 
TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 
       28.34        24.92         1.64         6.15         2.79        90.54 
TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 
        3.02        27.19       119.54        46.88        99.16        70.16 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 
       60.89        34.78        15.58        31.73       122.43         9.34 
TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 
      119.80         8.78        31.63        88.11        41.69        33.93 
TCGA-21-A5DI TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 
       32.19        19.99         7.33        14.93         4.31        64.21 
TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4594 TCGA-22-4596 TCGA-22-4599 
       27.02        48.82        20.48        48.33         0.56        38.17 
TCGA-22-4601 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5472 
       34.75        32.02        19.30         9.57        11.77        64.93 
TCGA-22-5473 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       63.55         0.79        54.28        71.34        11.74        30.12 
TCGA-22-5491 TCGA-22-5492 TCGA-22-A5C4 TCGA-33-4532 TCGA-33-4547 TCGA-33-4582 
       56.32        16.64         0.95         7.63        43.10       103.53 
TCGA-33-4583 TCGA-33-4587 TCGA-33-4589 TCGA-33-6738 TCGA-34-2604 TCGA-34-2608 
      141.34        54.44        10.82        27.02        31.50        32.88 
TCGA-34-2609 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5241 TCGA-34-5927 
       31.27        67.79        56.38         9.07        14.07        30.94 
TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 
       18.15         4.96         3.95         0.43         0.39         6.58 
TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        8.12         7.46         7.82         6.81         0.39         3.39 
TCGA-39-5011 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       47.80        68.58        55.20        70.03        60.79         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 
       24.33         1.94        35.64        35.70        17.88        40.21 
TCGA-43-2578 TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 
       22.49        38.66        27.02        33.11        11.47        18.05 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7658 
       24.89        10.19         5.46         3.81         6.97        66.51 
TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 TCGA-43-A474 TCGA-43-A56U TCGA-43-A56V 
       13.38        11.77         2.93        11.61        14.20        12.03 
TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 
       10.65        13.91         0.39         0.39        29.95        17.79 
TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-5898 
       30.35         8.75        27.45        28.96         0.10        18.25 
TCGA-56-6545 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7730 
        2.04         0.99         0.43         0.99         1.45         0.20 
TCGA-56-7822 TCGA-56-8503 TCGA-56-8504 TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 
        0.03         1.35         5.85         1.81         1.18         2.07 
TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 TCGA-56-A49D TCGA-56-A4BW TCGA-56-A4BX 
        0.56         0.53         1.12         1.25         0.07         1.51 
TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DR TCGA-56-A5DS TCGA-58-8386 
        0.99         0.82         0.13         0.13         0.26         0.03 
TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 TCGA-58-A46J 
       13.25        12.43        29.95        71.24        16.47        64.87 
TCGA-58-A46K TCGA-58-A46L TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 
       34.36        36.59         3.58        12.23        10.22        96.82 
TCGA-60-2706 TCGA-60-2707 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2713 
       92.71        21.73        49.48        66.54        41.42        56.91 
TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
       50.33        35.34        48.49         3.19        32.32        29.85 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 
       35.90        23.57        26.83        11.77        16.96        43.10 
TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 
        2.01        21.07         0.99         1.02         2.01         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        0.99         0.99        21.01        25.05         0.99         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2771 TCGA-66-2773 
        1.02         2.01         2.01         7.07        19.00         3.02 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
       19.00        12.03         3.98        12.00        24.95         1.97 
TCGA-66-2786 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 
       25.97        22.98         4.04        22.98         5.03        30.02 
TCGA-66-2793 TCGA-66-2795 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 
       10.06         4.01         2.73         6.64         6.94         8.02 
TCGA-68-A59I TCGA-77-6842 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7140 
        3.98        29.56        75.09        23.28        11.18        20.78 
TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-8007 TCGA-77-8128 
       70.13       106.95         0.16        46.78         6.51        37.81 
TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 
       82.92        12.59        53.92        39.09        17.72       104.09 
TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 TCGA-77-8153 TCGA-77-8154 
       11.54        26.40        27.39         6.97        55.36        35.90 
TCGA-77-8156 TCGA-77-A5FZ TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6560 TCGA-85-7697 
        0.33       126.18        30.81        23.44         0.36         0.33 
TCGA-85-7698 TCGA-85-7699 TCGA-85-7844 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 
        1.61         0.03         1.25         0.85         1.97         0.53 
TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8287 TCGA-85-8288 
       16.77        14.07        16.87         0.43         1.45         1.78 
TCGA-85-8350 TCGA-85-8351 TCGA-85-8352 TCGA-85-8355 TCGA-85-8481 TCGA-85-8580 
        1.97         1.81         2.20         2.01         0.69        14.63 
TCGA-85-8582 TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL TCGA-85-A50M TCGA-85-A513 
       13.94         0.10        15.62         0.49         0.62         0.79 
TCGA-85-A53L TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7964 TCGA-90-A4ED 
        0.43        24.92         9.50         2.93        14.07         8.02 
TCGA-92-7341 TCGA-92-8063 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 
        3.48         4.01         2.30         2.86         0.16        11.70 
TCGA-96-7544 TCGA-96-8169 TCGA-96-8170 TCGA-96-A4JL TCGA-98-7454 TCGA-98-8021 
       39.88         6.21         6.94         6.02         8.42        13.58 
TCGA-98-8022 TCGA-98-8023 TCGA-L3-A4E7 TCGA-L3-A524 TCGA-MF-A522 TCGA-NC-A5HE 
        7.36        10.13         1.15        14.76         2.73        56.61 
TCGA-NC-A5HG TCGA-NC-A5HI 
       50.89        37.32 

  19P GAIN MUTATED 19P GAIN WILD-TYPE 
              0.36               0.03 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
            173.82             141.34 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
            14.630             12.805 
[1] "0.4 - 173.8 (14.6)" "0.0 - 141.3 (12.8)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56U 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-43-A56V         TCGA-46-3768         TCGA-46-6025 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-46-6026         TCGA-51-4079         TCGA-51-4080 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-51-4081         TCGA-52-7622         TCGA-52-7809 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-52-7810         TCGA-52-7811         TCGA-52-7812 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-5898 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-56-A49D         TCGA-56-A4BW         TCGA-56-A4BX 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-56-A4BY         TCGA-56-A4ZJ         TCGA-56-A4ZK 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-56-A5DR         TCGA-56-A5DS         TCGA-58-8386 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
  "19P GAIN MUTATED"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-68-A59I 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-68-A59J         TCGA-77-6842         TCGA-77-6843 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-77-8150         TCGA-77-8153         TCGA-77-8154 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5FZ         TCGA-77-A5G3 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-77-A5GB         TCGA-77-A5GH         TCGA-85-6175 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56U 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-43-A56V         TCGA-46-3768         TCGA-46-6025 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-46-6026         TCGA-51-4079         TCGA-51-4080 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-51-4081         TCGA-52-7622         TCGA-52-7809 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-52-7810         TCGA-52-7811         TCGA-52-7812 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-5898 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-56-A49D         TCGA-56-A4BW         TCGA-56-A4BX 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-56-A4BY         TCGA-56-A4ZJ         TCGA-56-A4ZK 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-56-A5DR         TCGA-56-A5DS         TCGA-58-8386 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
  "19P GAIN MUTATED"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-68-A59I 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-68-A59J         TCGA-77-6842         TCGA-77-6843 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-77-8150         TCGA-77-8153         TCGA-77-8154 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5FZ         TCGA-77-A5G3 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-77-A5GB         TCGA-77-A5GH         TCGA-85-6175 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56U 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-43-A56V         TCGA-46-3768         TCGA-46-6025 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-46-6026         TCGA-51-4079         TCGA-51-4080 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-51-4081         TCGA-52-7622         TCGA-52-7809 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-52-7810         TCGA-52-7811         TCGA-52-7812 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-5898 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-56-A49D         TCGA-56-A4BW         TCGA-56-A4BX 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-56-A4BY         TCGA-56-A4ZJ         TCGA-56-A4ZK 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-56-A5DR         TCGA-56-A5DS         TCGA-58-8386 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
  "19P GAIN MUTATED"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-68-A59I 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-68-A59J         TCGA-77-6842         TCGA-77-6843 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-77-8150         TCGA-77-8153         TCGA-77-8154 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5FZ         TCGA-77-A5G3 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-77-A5GB         TCGA-77-A5GH         TCGA-85-6175 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
[1] "hr=" "1"  
D34V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  19P GAIN MUTATED         0       12       31        1        12        15
  19P GAIN WILD-TYPE       1       57      105        0        38        55
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  19P GAIN MUTATED           15          5        0
  19P GAIN WILD-TYPE         39         15        5
D34V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  19P GAIN MUTATED    16  59  12   4
  19P GAIN WILD-TYPE  79 191  33  15
D34V4, multiclass
    clus
vv   19P GAIN MUTATED 19P GAIN WILD-TYPE
  T1               16                 79
  T2               59                191
  T3               12                 33
  T4                4                 15
                    vv
clus                  N0  N1  N2  N3
  19P GAIN MUTATED    52  29   9   0
  19P GAIN WILD-TYPE 203  80  25   5
D34V5, multiclass
    clus
vv   19P GAIN MUTATED 19P GAIN WILD-TYPE
  N0               52                203
  N1               29                 80
  N2                9                 25
  N3                0                  5
                    vv
clus                  M0  M1  MX
  19P GAIN MUTATED    80   0  10
  19P GAIN WILD-TYPE 269   5  39
D34V6, multiclass
    clus
vv   19P GAIN MUTATED 19P GAIN WILD-TYPE
  M0               80                269
  M1                0                  5
  MX               10                 39
D34V7, binary
                    cls
clus                   0   1
  19P GAIN MUTATED    23  68
  19P GAIN WILD-TYPE  81 237
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P GAIN MUTATED     23   68
  19P GAIN WILD-TYPE   81  237
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  FEMALE               23                 81
  MALE                 68                237
D34V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  19P GAIN MUTATED                                       6
  19P GAIN WILD-TYPE                                     6
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  19P GAIN MUTATED                                        1
  19P GAIN WILD-TYPE                                      5
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  19P GAIN MUTATED                                         0
  19P GAIN WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  19P GAIN MUTATED                                                            84
  19P GAIN WILD-TYPE                                                         306
D34V9, multiclass
                                                             clus
vv                                                            19P GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      6
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               84
                                                             clus
vv                                                            19P GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                        6
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                306
D34V10, binary
                    cls
clus                   0   1
  19P GAIN MUTATED     6  85
  19P GAIN WILD-TYPE   7 311
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P GAIN MUTATED      6   85
  19P GAIN WILD-TYPE    7  311
     clus
vv    19P GAIN MUTATED 19P GAIN WILD-TYPE
  NO                 6                  7
  YES               85                311
D34V11, continuous
D34V12, continuous
                    vv
clus                  R0  R1  R2  RX
  19P GAIN MUTATED    72   2   1   5
  19P GAIN WILD-TYPE 260   6   3  13
D34V13, multiclass
    clus
vv   19P GAIN MUTATED 19P GAIN WILD-TYPE
  R0               72                260
  R1                2                  6
  R2                1                  3
  RX                5                 13

Clustering(35) Variable = 19Q GAIN MUTATION ANALYSIS
D35V1, survival
                    sevent
clus2                  0   1
  19Q GAIN MUTATED    72  52
  19Q GAIN WILD-TYPE 172  87
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
               124                259 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                52                 87 
$`19Q GAIN MUTATED`
TCGA-18-3407 TCGA-18-3410 TCGA-18-3411 TCGA-18-3417 TCGA-18-3421 TCGA-21-1070 
        4.47         4.80        46.52        24.92        43.76       119.54 
TCGA-21-1071 TCGA-21-1081 TCGA-21-5786 TCGA-21-5787 TCGA-22-1011 TCGA-22-1012 
       46.88         9.34        33.93        10.82         1.74        14.10 
TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-5477 
       35.08        24.13        38.17        34.75        13.12        44.25 
TCGA-22-5481 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-33-4533 TCGA-33-4538 
       79.20        18.84        30.12        62.86       114.05        97.94 
TCGA-33-4566 TCGA-33-4582 TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 
      173.82       103.53        19.76        27.02         2.63        61.61 
TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5239 
       31.50        28.96        32.88        31.27        50.24        23.24 
TCGA-34-5240 TCGA-34-5928 TCGA-34-7107 TCGA-37-3792 TCGA-37-5819 TCGA-39-5016 
       12.00        18.15         1.12         0.39         3.39        74.07 
TCGA-39-5019 TCGA-39-5029 TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5039 
       44.75        24.33        27.39        36.39        15.58        17.88 
TCGA-39-5040 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 TCGA-43-7657 
       17.06        33.11        11.47        18.05        12.36         7.76 
TCGA-43-A475 TCGA-43-A56V TCGA-46-3768 TCGA-52-7809 TCGA-56-6545 TCGA-56-6546 
        9.73        12.03         9.99         5.46         2.04         0.62 
TCGA-56-7580 TCGA-56-7582 TCGA-56-8629 TCGA-56-A49D TCGA-56-A4BY TCGA-56-A5DR 
        1.32         0.85         1.12         1.25         0.99         0.13 
TCGA-58-8393 TCGA-58-A46K TCGA-58-A46M TCGA-58-A46N TCGA-60-2695 TCGA-60-2704 
       34.78        34.36        23.24        17.75        21.11        37.94 
TCGA-60-2708 TCGA-60-2712 TCGA-60-2719 TCGA-60-2722 TCGA-60-2723 TCGA-66-2742 
       80.45         9.01        42.64        29.85        35.90        21.07 
TCGA-66-2758 TCGA-66-2763 TCGA-66-2770 TCGA-66-2777 TCGA-66-2787 TCGA-66-2788 
       21.01         0.99        23.01         2.01        40.01        22.98 
TCGA-66-2793 TCGA-66-2800 TCGA-68-8251 TCGA-68-A59I TCGA-68-A59J TCGA-77-6842 
       10.06        49.05         3.16         3.98         3.42        29.56 
TCGA-77-6843 TCGA-77-7138 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7465 
       73.12        11.18         0.49        42.28        70.13        15.75 
TCGA-77-8008 TCGA-77-8009 TCGA-77-8130 TCGA-77-8138 TCGA-77-8145 TCGA-77-8148 
       86.76        53.95        82.92        17.72         6.97         9.63 
TCGA-77-8150 TCGA-77-A5G3 TCGA-85-6175 TCGA-85-7696 TCGA-85-7699 TCGA-85-8350 
       54.41       117.57         9.67         0.59         0.03         1.97 
TCGA-85-8353 TCGA-85-8354 TCGA-85-A4QR TCGA-85-A50M TCGA-85-A53L TCGA-90-7769 
        1.78         2.01         0.82         0.62         0.43        11.77 
TCGA-90-A4EE TCGA-92-7340 TCGA-92-7341 TCGA-92-8064 TCGA-96-7545 TCGA-96-A4JK 
       10.88         2.70         3.48         5.26        44.19         8.98 
TCGA-98-8020 TCGA-98-8022 TCGA-J1-A4AH TCGA-LA-A446 
        2.76         7.36         7.30         1.18 

$`19Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3408 TCGA-18-3409 TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 
       12.16        81.01        79.46        11.34        13.02        59.51 
TCGA-18-3416 TCGA-18-3419 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 
       28.34         1.64         6.15         2.79        90.54         3.02 
TCGA-18-5595 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 
       27.19        99.16        70.16        60.89        34.78        15.58 
TCGA-21-1079 TCGA-21-1080 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 
       31.73       122.43       119.80         8.78        31.63        88.11 
TCGA-21-5784 TCGA-21-A5DI TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 
       41.69        32.19        19.99         7.33        14.93         4.31 
TCGA-22-1005 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4594 TCGA-22-4596 
       64.21        27.02        48.82        20.48        48.33         0.56 
TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       32.02        19.30         9.57        11.77        31.73        64.93 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5482 
       63.55        14.63         0.79        54.28        71.34        11.74 
TCGA-22-5491 TCGA-22-5492 TCGA-22-A5C4 TCGA-33-4532 TCGA-33-4547 TCGA-33-4583 
       56.32        16.64         0.95         7.63        43.10       141.34 
TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       14.07        54.44        10.82        67.79        56.38         9.07 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4129 
       14.07        30.94         4.96         3.95         0.43         6.58 
TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-39-5011 
        8.12         7.46         7.82         6.81         0.39        47.80 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5030 
       68.58        55.20        70.03        60.79         1.71         1.94 
TCGA-39-5036 TCGA-39-5037 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-3394 
       35.64        35.70        40.21        22.49        38.66        27.02 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7658 
       24.89        10.19         5.46         3.81         6.97        66.51 
TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 TCGA-43-A474 TCGA-43-A56U TCGA-46-6025 
       13.38        11.77         2.93        11.61        14.20        10.65 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7810 
       13.91         0.39         0.39        29.95        17.79        30.35 
TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-5898 TCGA-56-7221 
        8.75        27.45        28.96         0.10        18.25         0.99 
TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7730 TCGA-56-7822 TCGA-56-8503 
        0.43         0.99         1.45         0.20         0.03         1.35 
TCGA-56-8504 TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 
        5.85         1.81         1.18         2.07         0.56         0.53 
TCGA-56-A4BW TCGA-56-A4BX TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DS TCGA-58-8386 
        0.07         1.51         0.82         0.13         0.26         0.03 
TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 TCGA-58-A46J 
       13.25        12.43        29.95        71.24        16.47        64.87 
TCGA-58-A46L TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2706 
       36.59         3.58        12.23        10.22        96.82        92.71 
TCGA-60-2707 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2713 TCGA-60-2714 
       21.73        49.48        66.54        41.42        56.91        50.33 
TCGA-60-2715 TCGA-60-2716 TCGA-60-2720 TCGA-60-2721 TCGA-60-2724 TCGA-60-2725 
       35.34        48.49         3.19        32.32        23.57        26.83 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2744 TCGA-66-2753 
       11.77        16.96        43.10         2.01         0.99         1.02 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2759 TCGA-66-2765 
        2.01         0.92         0.99         0.99        25.05         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2771 TCGA-66-2773 
        1.02         2.01         2.01         7.07        19.00         3.02 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
       19.00        12.03         3.98        12.00        24.95         1.97 
TCGA-66-2786 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2794 
       25.97         4.04        22.98         5.03        30.02        54.08 
TCGA-66-2795 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 TCGA-77-6844 
        4.01         2.73         6.64         6.94         8.02        75.09 
TCGA-77-6845 TCGA-77-7139 TCGA-77-7140 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 
       23.28        89.98        20.78       106.95         0.16        46.78 
TCGA-77-8007 TCGA-77-8128 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8139 
        6.51        37.81        12.59        53.92        39.09       104.09 
TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 TCGA-77-8153 TCGA-77-8154 TCGA-77-8156 
       11.54        26.40        27.39        55.36        35.90         0.33 
TCGA-77-A5FZ TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 
      126.18        30.81        23.44         0.36        12.99         1.12 
TCGA-85-7697 TCGA-85-7698 TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 
        0.33         1.61         1.15         1.25         1.97         0.85 
TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 
        1.97         0.53        16.77        14.07        16.87         0.43 
TCGA-85-8277 TCGA-85-8287 TCGA-85-8288 TCGA-85-8351 TCGA-85-8352 TCGA-85-8355 
        0.36         1.45         1.78         1.81         2.20         2.01 
TCGA-85-8479 TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 TCGA-85-8666 
        0.72         0.69        14.63        13.94         0.10        15.62 
TCGA-85-A4CL TCGA-85-A513 TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7964 
        0.49         0.79        24.92         9.50         2.93        14.07 
TCGA-90-A4ED TCGA-92-8063 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 
        8.02         4.01         2.30         2.86         0.16        11.70 
TCGA-96-7544 TCGA-96-8169 TCGA-96-8170 TCGA-96-A4JL TCGA-98-7454 TCGA-98-8021 
       39.88         6.21         6.94         6.02         8.42        13.58 
TCGA-98-8023 TCGA-L3-A4E7 TCGA-L3-A524 TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HG 
       10.13         1.15        14.76         2.73        56.61        50.89 
TCGA-NC-A5HI 
       37.32 

  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
              0.03               0.03 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
            173.82             141.34 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
            17.815             12.230 
[1] "0.0 - 173.8 (17.8)" "0.0 - 141.3 (12.2)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
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  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
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  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-51-4081         TCGA-52-7622         TCGA-52-7809 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-52-7810         TCGA-52-7811         TCGA-52-7812 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-5898 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-56-A49D         TCGA-56-A4BW         TCGA-56-A4BX 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-56-A4BY         TCGA-56-A4ZJ         TCGA-56-A4ZK 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-56-A5DR         TCGA-56-A5DS         TCGA-58-8386 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-68-A59I 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-68-A59J         TCGA-77-6842         TCGA-77-6843 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-77-8150         TCGA-77-8153         TCGA-77-8154 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5FZ         TCGA-77-A5G3 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-77-A5GB         TCGA-77-A5GH         TCGA-85-6175 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D35V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  19Q GAIN MUTATED         0       17       43        1        17        21
  19Q GAIN WILD-TYPE       1       52       93        0        33        49
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  19Q GAIN MUTATED           23          6        2
  19Q GAIN WILD-TYPE         31         14        3
D35V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  19Q GAIN MUTATED    24  86  12   8
  19Q GAIN WILD-TYPE  71 164  33  11
D35V4, multiclass
    clus
vv   19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  T1               24                 71
  T2               86                164
  T3               12                 33
  T4                8                 11
                    vv
clus                  N0  N1  N2  N3
  19Q GAIN MUTATED    78  38  14   0
  19Q GAIN WILD-TYPE 177  71  20   5
D35V5, multiclass
    clus
vv   19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  N0               78                177
  N1               38                 71
  N2               14                 20
  N3                0                  5
                    vv
clus                  M0  M1  MX
  19Q GAIN MUTATED   111   2  16
  19Q GAIN WILD-TYPE 238   3  33
D35V6, multiclass
    clus
vv   19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  M0              111                238
  M1                2                  3
  MX               16                 33
D35V7, binary
                    cls
clus                   0   1
  19Q GAIN MUTATED    35  95
  19Q GAIN WILD-TYPE  69 210
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q GAIN MUTATED     35   95
  19Q GAIN WILD-TYPE   69  210
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  FEMALE               35                 69
  MALE                 95                210
D35V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  19Q GAIN MUTATED                                       7
  19Q GAIN WILD-TYPE                                     5
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  19Q GAIN MUTATED                                        0
  19Q GAIN WILD-TYPE                                      6
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  19Q GAIN MUTATED                                         0
  19Q GAIN WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  19Q GAIN MUTATED                                                           123
  19Q GAIN WILD-TYPE                                                         267
D35V9, multiclass
                                                             clus
vv                                                            19Q GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      7
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     0
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              123
                                                             clus
vv                                                            19Q GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                        5
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       6
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                267
D35V10, binary
                    cls
clus                   0   1
  19Q GAIN MUTATED     3 127
  19Q GAIN WILD-TYPE  10 269
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q GAIN MUTATED      3  127
  19Q GAIN WILD-TYPE   10  269
     clus
vv    19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  NO                 3                 10
  YES              127                269
D35V11, continuous
D35V12, continuous
                    vv
clus                  R0  R1  R2  RX
  19Q GAIN MUTATED   106   3   0   5
  19Q GAIN WILD-TYPE 226   5   4  13
D35V13, multiclass
    clus
vv   19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  R0              106                226
  R1                3                  5
  R2                0                  4
  RX                5                 13

Clustering(36) Variable = 20P GAIN MUTATION ANALYSIS
D36V1, survival
                    sevent
clus2                  0   1
  20P GAIN MUTATED   124  75
  20P GAIN WILD-TYPE 120  64
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
               199                184 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                75                 64 
$`20P GAIN MUTATED`
TCGA-18-3407 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 TCGA-18-3414 
        4.47        79.46         4.80        46.52        11.34        13.02 
TCGA-18-3417 TCGA-18-5592 TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 
       24.92         3.02       119.54        46.88        60.89        34.78 
TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5783 TCGA-21-5784 
      122.43         9.34       119.80         8.78        88.11        41.69 
TCGA-21-5786 TCGA-21-A5DI TCGA-22-1011 TCGA-22-1016 TCGA-22-4591 TCGA-22-4594 
       33.93        32.19         1.74        27.02        20.48        48.33 
TCGA-22-4595 TCGA-22-4604 TCGA-22-4605 TCGA-22-4609 TCGA-22-5471 TCGA-22-5472 
       24.13        13.12        32.02         9.57        31.73        64.93 
TCGA-22-5477 TCGA-22-5480 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5491 
       44.25        71.34        11.74        18.84        30.12        56.32 
TCGA-22-A5C4 TCGA-33-4532 TCGA-33-4538 TCGA-33-4582 TCGA-33-4587 TCGA-33-4589 
        0.95         7.63        97.94       103.53        54.44        10.82 
TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2605 TCGA-34-2608 TCGA-34-5231 
       27.02         2.63        61.61        28.96        32.88        50.24 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5928 TCGA-34-7107 TCGA-37-3783 TCGA-37-4130 
       23.24        12.00        18.15         1.12         3.95         8.12 
TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5028 
        0.39         3.39        74.07        44.75        68.58         1.71 
TCGA-39-5029 TCGA-39-5031 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 
       24.33        27.39        35.64        35.70        17.88        40.21 
TCGA-43-2578 TCGA-43-3920 TCGA-43-5670 TCGA-43-6143 TCGA-43-6773 TCGA-43-7656 
       22.49        33.11        18.05        12.36         3.81         6.97 
TCGA-43-7657 TCGA-43-7658 TCGA-43-8118 TCGA-43-A474 TCGA-43-A56V TCGA-46-3768 
        7.76        66.51         2.93        11.61        12.03         9.99 
TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 
       10.65        13.91         0.39        29.95        17.79         5.46 
TCGA-52-7811 TCGA-56-1622 TCGA-56-5898 TCGA-56-6545 TCGA-56-7222 TCGA-56-7223 
        8.75        28.96        18.25         2.04         0.43         0.99 
TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 TCGA-56-8504 
        1.45         1.32         0.85         0.20         0.03         5.85 
TCGA-56-8622 TCGA-56-8624 TCGA-56-A49D TCGA-56-A4BW TCGA-56-A4ZJ TCGA-56-A4ZK 
        1.81         1.18         1.25         0.07         0.82         0.13 
TCGA-56-A5DR TCGA-58-8386 TCGA-58-8391 TCGA-58-8393 TCGA-58-A46K TCGA-60-2695 
        0.13         0.03        71.24        34.78        34.36        21.11 
TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2707 TCGA-60-2708 TCGA-60-2711 
       10.22        96.82        37.94        21.73        80.45        41.42 
TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2722 TCGA-60-2723 TCGA-60-2726 
       35.34        42.64         3.19        29.85        35.90        11.77 
TCGA-66-2737 TCGA-66-2742 TCGA-66-2756 TCGA-66-2759 TCGA-66-2763 TCGA-66-2769 
        2.01        21.07         0.99        25.05         0.99         7.07 
TCGA-66-2770 TCGA-66-2773 TCGA-66-2777 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
       23.01         3.02         2.01        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2787 TCGA-66-2788 TCGA-66-2792 TCGA-66-2793 TCGA-66-2800 
       24.95        40.01        22.98        30.02        10.06        49.05 
TCGA-68-7756 TCGA-68-8250 TCGA-68-8251 TCGA-68-A59I TCGA-77-6842 TCGA-77-6844 
        6.64         8.02         3.16         3.98        29.56        75.09 
TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 
       23.28        11.18        89.98        20.78         0.49        42.28 
TCGA-77-7338 TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 TCGA-77-8130 TCGA-77-8133 
        0.16         6.51        86.76        53.95        82.92        53.92 
TCGA-77-8136 TCGA-77-8143 TCGA-77-8156 TCGA-77-A5G3 TCGA-77-A5GB TCGA-77-A5GH 
       39.09        26.40         0.33       117.57        30.81        23.44 
TCGA-85-6175 TCGA-85-6561 TCGA-85-7696 TCGA-85-7698 TCGA-85-7843 TCGA-85-7844 
        9.67        12.99         0.59         1.61         1.15         1.25 
TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 
        1.97         0.53        16.77         0.43         0.36         1.45 
TCGA-85-8350 TCGA-85-8353 TCGA-85-8481 TCGA-85-8664 TCGA-85-8666 TCGA-85-A50M 
        1.97         1.78         0.69         0.10        15.62         0.62 
TCGA-85-A53L TCGA-90-7767 TCGA-90-7769 TCGA-90-A4ED TCGA-90-A4EE TCGA-92-7341 
        0.43         2.93        11.77         8.02        10.88         3.48 
TCGA-92-8064 TCGA-94-7557 TCGA-94-7943 TCGA-96-7545 TCGA-96-A4JK TCGA-98-8020 
        5.26         0.16        11.70        44.19         8.98         2.76 
TCGA-98-8021 TCGA-98-8022 TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-L3-A524 TCGA-LA-A446 
       13.58         7.36         7.30         1.15        14.76         1.18 
TCGA-NC-A5HI 
       37.32 

$`20P GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3408 TCGA-18-3415 TCGA-18-3416 TCGA-18-3419 TCGA-18-3421 
       12.16        81.01        59.51        28.34         1.64        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5595 TCGA-21-1072 TCGA-21-1075 
        6.15         2.79        90.54        27.19        99.16        70.16 
TCGA-21-1078 TCGA-21-1079 TCGA-21-5782 TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 
       15.58        31.73        31.63        10.82        19.99         7.33 
TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1012 TCGA-22-1017 TCGA-22-4593 
       14.93         4.31        64.21        14.10        48.82        35.08 
TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4607 TCGA-22-4613 TCGA-22-5473 
        0.56        38.17        34.75        19.30        11.77        63.55 
TCGA-22-5474 TCGA-22-5478 TCGA-22-5479 TCGA-22-5481 TCGA-22-5489 TCGA-22-5492 
       14.63         0.79        54.28        79.20        62.86        16.64 
TCGA-33-4533 TCGA-33-4547 TCGA-33-4566 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
      114.05        43.10       173.82       141.34        14.07        19.76 
TCGA-34-2604 TCGA-34-2609 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5241 
       31.50        31.27        67.79        56.38         9.07        14.07 
TCGA-34-5927 TCGA-34-5929 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4132 
       30.94         4.96         0.43         0.39         6.58         7.46 
TCGA-37-4133 TCGA-37-4135 TCGA-39-5011 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
        7.82         6.81        47.80        55.20        70.03        60.79 
TCGA-39-5030 TCGA-39-5034 TCGA-39-5035 TCGA-39-5040 TCGA-43-2581 TCGA-43-3394 
        1.94        36.39        15.58        17.06        38.66        27.02 
TCGA-43-5668 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-8115 TCGA-43-8116 
       11.47        24.89        10.19         5.46        13.38        11.77 
TCGA-43-A475 TCGA-43-A56U TCGA-51-4080 TCGA-52-7810 TCGA-52-7812 TCGA-56-5897 
        9.73        14.20         0.39        30.35        27.45         0.10 
TCGA-56-6546 TCGA-56-7221 TCGA-56-8503 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 
        0.62         0.99         1.35         2.07         0.56         0.53 
TCGA-56-8629 TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A5DS TCGA-58-8387 TCGA-58-8388 
        1.12         1.51         0.99         0.26        13.25        12.43 
TCGA-58-8390 TCGA-58-8392 TCGA-58-A46J TCGA-58-A46L TCGA-58-A46M TCGA-58-A46N 
       29.95        16.47        64.87        36.59        23.24        17.75 
TCGA-60-2696 TCGA-60-2697 TCGA-60-2706 TCGA-60-2709 TCGA-60-2710 TCGA-60-2712 
        3.58        12.23        92.71        49.48        66.54         9.01 
TCGA-60-2713 TCGA-60-2714 TCGA-60-2716 TCGA-60-2721 TCGA-60-2724 TCGA-60-2725 
       56.91        50.33        48.49        32.32        23.57        26.83 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 
       16.96        43.10         0.99         1.02         2.01         0.92 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
        0.99        21.01         2.01         1.02         2.01         2.01 
TCGA-66-2771 TCGA-66-2778 TCGA-66-2785 TCGA-66-2786 TCGA-66-2789 TCGA-66-2790 
       19.00        19.00         1.97        25.97         4.04        22.98 
TCGA-66-2791 TCGA-66-2794 TCGA-66-2795 TCGA-68-7755 TCGA-68-7757 TCGA-68-A59J 
        5.03        54.08         4.01         2.73         6.94         3.42 
TCGA-77-6843 TCGA-77-7335 TCGA-77-7337 TCGA-77-7463 TCGA-77-7465 TCGA-77-8128 
       73.12        70.13       106.95        46.78        15.75        37.81 
TCGA-77-8131 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8144 TCGA-77-8145 
       12.59        17.72       104.09        11.54        27.39         6.97 
TCGA-77-8148 TCGA-77-8150 TCGA-77-8153 TCGA-77-8154 TCGA-77-A5FZ TCGA-85-6560 
        9.63        54.41        55.36        35.90       126.18         0.36 
TCGA-85-6798 TCGA-85-7697 TCGA-85-7699 TCGA-85-7950 TCGA-85-8048 TCGA-85-8071 
        1.12         0.33         0.03         1.97         0.85        14.07 
TCGA-85-8072 TCGA-85-8288 TCGA-85-8351 TCGA-85-8352 TCGA-85-8354 TCGA-85-8355 
       16.87         1.78         1.81         2.20         2.01         2.01 
TCGA-85-8479 TCGA-85-8580 TCGA-85-8582 TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A513 
        0.72        14.63        13.94         0.49         0.82         0.79 
TCGA-90-6837 TCGA-90-7766 TCGA-90-7964 TCGA-92-7340 TCGA-92-8063 TCGA-92-8065 
       24.92         9.50        14.07         2.70         4.01         2.30 
TCGA-94-7033 TCGA-96-7544 TCGA-96-8169 TCGA-96-8170 TCGA-96-A4JL TCGA-98-7454 
        2.86        39.88         6.21         6.94         6.02         8.42 
TCGA-98-8023 TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HG 
       10.13         2.73        56.61        50.89 

  20P GAIN MUTATED 20P GAIN WILD-TYPE 
              0.03               0.03 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
            122.43             173.82 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
             12.03              14.07 
[1] "0.0 - 122.4 (12.0)" "0.0 - 173.8 (14.1)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56U 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-43-A56V         TCGA-46-3768         TCGA-46-6025 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-46-6026         TCGA-51-4079         TCGA-51-4080 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-51-4081         TCGA-52-7622         TCGA-52-7809 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-52-7810         TCGA-52-7811         TCGA-52-7812 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-5898 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-56-A49D         TCGA-56-A4BW         TCGA-56-A4BX 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-56-A4BY         TCGA-56-A4ZJ         TCGA-56-A4ZK 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-56-A5DR         TCGA-56-A5DS         TCGA-58-8386 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-68-A59I 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-68-A59J         TCGA-77-6842         TCGA-77-6843 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8153         TCGA-77-8154 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5FZ         TCGA-77-A5G3 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-77-A5GB         TCGA-77-A5GH         TCGA-85-6175 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56U 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-43-A56V         TCGA-46-3768         TCGA-46-6025 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-46-6026         TCGA-51-4079         TCGA-51-4080 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-51-4081         TCGA-52-7622         TCGA-52-7809 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-52-7810         TCGA-52-7811         TCGA-52-7812 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-5898 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-56-A49D         TCGA-56-A4BW         TCGA-56-A4BX 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-56-A4BY         TCGA-56-A4ZJ         TCGA-56-A4ZK 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-56-A5DR         TCGA-56-A5DS         TCGA-58-8386 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-68-A59I 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-68-A59J         TCGA-77-6842         TCGA-77-6843 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8153         TCGA-77-8154 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5FZ         TCGA-77-A5G3 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-77-A5GB         TCGA-77-A5GH         TCGA-85-6175 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56U 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-43-A56V         TCGA-46-3768         TCGA-46-6025 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-46-6026         TCGA-51-4079         TCGA-51-4080 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-51-4081         TCGA-52-7622         TCGA-52-7809 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-52-7810         TCGA-52-7811         TCGA-52-7812 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-5898 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-56-A49D         TCGA-56-A4BW         TCGA-56-A4BX 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-56-A4BY         TCGA-56-A4ZJ         TCGA-56-A4ZK 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-56-A5DR         TCGA-56-A5DS         TCGA-58-8386 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-68-A59I 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-68-A59J         TCGA-77-6842         TCGA-77-6843 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8153         TCGA-77-8154 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5FZ         TCGA-77-A5G3 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-77-A5GB         TCGA-77-A5GH         TCGA-85-6175 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
[1] "hr=" "1.2"
D36V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  20P GAIN MUTATED         1       32       72        1        21        39
  20P GAIN WILD-TYPE       0       37       64        0        29        31
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  20P GAIN MUTATED           31          7        4
  20P GAIN WILD-TYPE         23         13        1
D36V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  20P GAIN MUTATED    44 131  26   9
  20P GAIN WILD-TYPE  51 119  19  10
D36V4, multiclass
    clus
vv   20P GAIN MUTATED 20P GAIN WILD-TYPE
  T1               44                 51
  T2              131                119
  T3               26                 19
  T4                9                 10
                    vv
clus                  N0  N1  N2  N3
  20P GAIN MUTATED   130  58  17   1
  20P GAIN WILD-TYPE 125  51  17   4
D36V5, multiclass
    clus
vv   20P GAIN MUTATED 20P GAIN WILD-TYPE
  N0              130                125
  N1               58                 51
  N2               17                 17
  N3                1                  4
                    vv
clus                  M0  M1  MX
  20P GAIN MUTATED   181   4  22
  20P GAIN WILD-TYPE 168   1  27
D36V6, multiclass
    clus
vv   20P GAIN MUTATED 20P GAIN WILD-TYPE
  M0              181                168
  M1                4                  1
  MX               22                 27
D36V7, binary
                    cls
clus                   0   1
  20P GAIN MUTATED    45 165
  20P GAIN WILD-TYPE  59 140
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P GAIN MUTATED     45  165
  20P GAIN WILD-TYPE   59  140
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  FEMALE               45                 59
  MALE                165                140
D36V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  20P GAIN MUTATED                                       7
  20P GAIN WILD-TYPE                                     5
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  20P GAIN MUTATED                                        2
  20P GAIN WILD-TYPE                                      4
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  20P GAIN MUTATED                                         1
  20P GAIN WILD-TYPE                                       0
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  20P GAIN MUTATED                                                           200
  20P GAIN WILD-TYPE                                                         190
D36V9, multiclass
                                                             clus
vv                                                            20P GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      7
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     2
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              200
                                                             clus
vv                                                            20P GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                        5
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       4
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                190
D36V10, binary
                    cls
clus                   0   1
  20P GAIN MUTATED     9 201
  20P GAIN WILD-TYPE   4 195
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P GAIN MUTATED      9  201
  20P GAIN WILD-TYPE    4  195
     clus
vv    20P GAIN MUTATED 20P GAIN WILD-TYPE
  NO                 9                  4
  YES              201                195
D36V11, continuous
D36V12, continuous
                    vv
clus                  R0  R1  R2  RX
  20P GAIN MUTATED   172   3   3   8
  20P GAIN WILD-TYPE 160   5   1  10
D36V13, multiclass
    clus
vv   20P GAIN MUTATED 20P GAIN WILD-TYPE
  R0              172                160
  R1                3                  5
  R2                3                  1
  RX                8                 10

Clustering(37) Variable = 20Q GAIN MUTATION ANALYSIS
D37V1, survival
                    sevent
clus2                  0   1
  20Q GAIN MUTATED   120  70
  20Q GAIN WILD-TYPE 124  69
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
               190                193 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                70                 69 
$`20Q GAIN MUTATED`
TCGA-18-3407 TCGA-18-3409 TCGA-18-3410 TCGA-18-3412 TCGA-18-3414 TCGA-18-3417 
        4.47        79.46         4.80        11.34        13.02        24.92 
TCGA-18-5592 TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1079 
        3.02       119.54        46.88        60.89        34.78        31.73 
TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 
        9.34       119.80         8.78        41.69        33.93        10.82 
TCGA-21-A5DI TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 
       32.19         1.74        14.10        27.02        20.48        35.08 
TCGA-22-4594 TCGA-22-4595 TCGA-22-4605 TCGA-22-5472 TCGA-22-5480 TCGA-22-5483 
       48.33        24.13        32.02        64.93        71.34        18.84 
TCGA-22-5485 TCGA-22-5491 TCGA-22-A5C4 TCGA-33-4532 TCGA-33-4538 TCGA-33-4582 
       30.12        56.32         0.95         7.63        97.94       103.53 
TCGA-33-4587 TCGA-33-4589 TCGA-33-6738 TCGA-34-2596 TCGA-34-2604 TCGA-34-2605 
       54.44        10.82        27.02         2.63        31.50        28.96 
TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5239 TCGA-34-5240 TCGA-34-5928 
       32.88        31.27        50.24        23.24        12.00        18.15 
TCGA-37-3783 TCGA-37-3792 TCGA-37-4130 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        3.95         0.39         8.12         6.81         0.39         3.39 
TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5028 TCGA-39-5029 TCGA-39-5031 
       47.80        74.07        44.75         1.71        24.33        27.39 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 TCGA-43-3920 
       35.64        35.70        17.88        40.21        22.49        33.11 
TCGA-43-5670 TCGA-43-6143 TCGA-43-7656 TCGA-43-7658 TCGA-43-8118 TCGA-43-A56V 
       18.05        12.36         6.97        66.51         2.93        12.03 
TCGA-46-3768 TCGA-46-6026 TCGA-52-7809 TCGA-52-7810 TCGA-52-7811 TCGA-56-1622 
        9.99        13.91         5.46        30.35         8.75        28.96 
TCGA-56-5898 TCGA-56-6545 TCGA-56-6546 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 
       18.25         2.04         0.62         0.43         0.99         1.45 
TCGA-56-7582 TCGA-56-7822 TCGA-56-8504 TCGA-56-8624 TCGA-56-8626 TCGA-56-A4BW 
        0.85         0.03         5.85         1.18         0.56         0.07 
TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DR TCGA-58-8386 TCGA-58-8393 TCGA-58-A46K 
        0.82         0.13         0.13         0.03        34.78        34.36 
TCGA-60-2695 TCGA-60-2703 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2711 
       21.11        96.82        92.71        21.73        80.45        41.42 
TCGA-60-2714 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2722 TCGA-60-2726 
       50.33        35.34        42.64         3.19        29.85        11.77 
TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2756 TCGA-66-2757 TCGA-66-2759 
        2.01        21.07         0.99         0.99         0.99        25.05 
TCGA-66-2763 TCGA-66-2769 TCGA-66-2770 TCGA-66-2777 TCGA-66-2780 TCGA-66-2781 
        0.99         7.07        23.01         2.01        12.03         3.98 
TCGA-66-2782 TCGA-66-2785 TCGA-66-2787 TCGA-66-2788 TCGA-66-2793 TCGA-66-2800 
       12.00         1.97        40.01        22.98        10.06        49.05 
TCGA-68-7756 TCGA-68-8250 TCGA-68-8251 TCGA-68-A59I TCGA-77-6845 TCGA-77-7138 
        6.64         8.02         3.16         3.98        23.28        11.18 
TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 
       89.98        20.78         0.49       106.95         0.16        46.78 
TCGA-77-7465 TCGA-77-8007 TCGA-77-8008 TCGA-77-8130 TCGA-77-8133 TCGA-77-8136 
       15.75         6.51        86.76        82.92        53.92        39.09 
TCGA-77-8143 TCGA-77-8145 TCGA-77-8148 TCGA-77-A5G3 TCGA-77-A5GB TCGA-77-A5GH 
       26.40         6.97         9.63       117.57        30.81        23.44 
TCGA-85-6175 TCGA-85-6560 TCGA-85-6561 TCGA-85-7696 TCGA-85-7843 TCGA-85-7844 
        9.67         0.36        12.99         0.59         1.15         1.25 
TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 
        1.97         0.53        16.77         0.43         0.36         1.45 
TCGA-85-8350 TCGA-85-8351 TCGA-85-8353 TCGA-85-8354 TCGA-85-8481 TCGA-85-8582 
        1.97         1.81         1.78         2.01         0.69        13.94 
TCGA-85-8664 TCGA-85-8666 TCGA-85-A4QR TCGA-85-A50M TCGA-85-A53L TCGA-90-7767 
        0.10        15.62         0.82         0.62         0.43         2.93 
TCGA-90-7769 TCGA-90-A4ED TCGA-90-A4EE TCGA-92-7341 TCGA-92-8064 TCGA-94-7557 
       11.77         8.02        10.88         3.48         5.26         0.16 
TCGA-94-7943 TCGA-96-7545 TCGA-98-8020 TCGA-98-8022 TCGA-J1-A4AH TCGA-L3-A4E7 
       11.70        44.19         2.76         7.36         7.30         1.15 
TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HG TCGA-NC-A5HI 
        1.18         2.73        50.89        37.32 

$`20Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3408 TCGA-18-3411 TCGA-18-3415 TCGA-18-3416 TCGA-18-3419 
       12.16        81.01        46.52        59.51        28.34         1.64 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5595 TCGA-21-1072 
       43.76         6.15         2.79        90.54        27.19        99.16 
TCGA-21-1075 TCGA-21-1078 TCGA-21-1080 TCGA-21-5782 TCGA-21-5783 TCGA-22-0940 
       70.16        15.58       122.43        31.63        88.11        19.99 
TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1017 TCGA-22-4596 
        7.33        14.93         4.31        64.21        48.82         0.56 
TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 
       38.17        34.75        13.12        19.30         9.57        11.77 
TCGA-22-5471 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 
       31.73        63.55        14.63        44.25         0.79        54.28 
TCGA-22-5481 TCGA-22-5482 TCGA-22-5489 TCGA-22-5492 TCGA-33-4533 TCGA-33-4547 
       79.20        11.74        62.86        16.64       114.05        43.10 
TCGA-33-4566 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2600 TCGA-34-5232 
      173.82       141.34        14.07        19.76        61.61        67.79 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5241 TCGA-34-5927 TCGA-34-5929 TCGA-34-7107 
       56.38         9.07        14.07        30.94         4.96         1.12 
TCGA-37-3789 TCGA-37-4129 TCGA-37-4132 TCGA-37-4133 TCGA-39-5021 TCGA-39-5022 
        0.43         6.58         7.46         7.82        68.58        55.20 
TCGA-39-5024 TCGA-39-5027 TCGA-39-5030 TCGA-39-5034 TCGA-39-5035 TCGA-39-5040 
       70.03        60.79         1.94        36.39        15.58        17.06 
TCGA-43-2581 TCGA-43-3394 TCGA-43-5668 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 
       38.66        27.02        11.47        24.89        10.19         5.46 
TCGA-43-6773 TCGA-43-7657 TCGA-43-8115 TCGA-43-8116 TCGA-43-A474 TCGA-43-A475 
        3.81         7.76        13.38        11.77        11.61         9.73 
TCGA-43-A56U TCGA-46-6025 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 
       14.20        10.65         0.39         0.39        29.95        17.79 
TCGA-52-7812 TCGA-56-5897 TCGA-56-7221 TCGA-56-7580 TCGA-56-7730 TCGA-56-8503 
       27.45         0.10         0.99         1.32         0.20         1.35 
TCGA-56-8622 TCGA-56-8625 TCGA-56-8628 TCGA-56-8629 TCGA-56-A49D TCGA-56-A4BX 
        1.81         2.07         0.53         1.12         1.25         1.51 
TCGA-56-A4BY TCGA-56-A5DS TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 
        0.99         0.26        13.25        12.43        29.95        71.24 
TCGA-58-8392 TCGA-58-A46J TCGA-58-A46L TCGA-58-A46M TCGA-58-A46N TCGA-60-2696 
       16.47        64.87        36.59        23.24        17.75         3.58 
TCGA-60-2697 TCGA-60-2698 TCGA-60-2704 TCGA-60-2709 TCGA-60-2710 TCGA-60-2712 
       12.23        10.22        37.94        49.48        66.54         9.01 
TCGA-60-2713 TCGA-60-2716 TCGA-60-2721 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
       56.91        48.49        32.32        35.90        23.57        26.83 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2758 
       16.96        43.10         1.02         2.01         0.92        21.01 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2771 TCGA-66-2773 
        2.01         1.02         2.01         2.01        19.00         3.02 
TCGA-66-2778 TCGA-66-2783 TCGA-66-2786 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 
       19.00        24.95        25.97         4.04        22.98         5.03 
TCGA-66-2792 TCGA-66-2794 TCGA-66-2795 TCGA-68-7755 TCGA-68-7757 TCGA-68-A59J 
       30.02        54.08         4.01         2.73         6.94         3.42 
TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-7142 TCGA-77-7335 TCGA-77-8009 
       29.56        73.12        75.09        42.28        70.13        53.95 
TCGA-77-8128 TCGA-77-8131 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8144 
       37.81        12.59        17.72       104.09        11.54        27.39 
TCGA-77-8150 TCGA-77-8153 TCGA-77-8154 TCGA-77-8156 TCGA-77-A5FZ TCGA-85-6798 
       54.41        55.36        35.90         0.33       126.18         1.12 
TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7950 TCGA-85-8048 TCGA-85-8071 
        0.33         1.61         0.03         1.97         0.85        14.07 
TCGA-85-8072 TCGA-85-8288 TCGA-85-8352 TCGA-85-8355 TCGA-85-8479 TCGA-85-8580 
       16.87         1.78         2.20         2.01         0.72        14.63 
TCGA-85-A4CL TCGA-85-A513 TCGA-90-6837 TCGA-90-7766 TCGA-90-7964 TCGA-92-7340 
        0.49         0.79        24.92         9.50        14.07         2.70 
TCGA-92-8063 TCGA-92-8065 TCGA-94-7033 TCGA-96-7544 TCGA-96-8169 TCGA-96-8170 
        4.01         2.30         2.86        39.88         6.21         6.94 
TCGA-96-A4JK TCGA-96-A4JL TCGA-98-7454 TCGA-98-8021 TCGA-98-8023 TCGA-L3-A524 
        8.98         6.02         8.42        13.58        10.13        14.76 
TCGA-NC-A5HE 
       56.61 

  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
              0.03               0.03 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
            119.80             173.82 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
              12.0               14.2 
[1] "0.0 - 119.8 (12.0)" "0.0 - 173.8 (14.2)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
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  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
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  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
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  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
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"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
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"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
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  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
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"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
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  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
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        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56U 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-43-A56V         TCGA-46-3768         TCGA-46-6025 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-46-6026         TCGA-51-4079         TCGA-51-4080 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-51-4081         TCGA-52-7622         TCGA-52-7809 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-52-7810         TCGA-52-7811         TCGA-52-7812 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-5898 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-56-A49D         TCGA-56-A4BW         TCGA-56-A4BX 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-56-A4BY         TCGA-56-A4ZJ         TCGA-56-A4ZK 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-56-A5DR         TCGA-56-A5DS         TCGA-58-8386 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-68-A59I 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-68-A59J         TCGA-77-6842         TCGA-77-6843 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-77-8150         TCGA-77-8153         TCGA-77-8154 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5FZ         TCGA-77-A5G3 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-77-A5GB         TCGA-77-A5GH         TCGA-85-6175 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
[1] "hr=" "1.2"
D37V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  20Q GAIN MUTATED         1       31       66        0        22        34
  20Q GAIN WILD-TYPE       0       38       70        1        28        36
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  20Q GAIN MUTATED           31          8        4
  20Q GAIN WILD-TYPE         23         12        1
D37V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  20Q GAIN MUTATED    43 119  27  10
  20Q GAIN WILD-TYPE  52 131  18   9
D37V4, multiclass
    clus
vv   20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  T1               43                 52
  T2              119                131
  T3               27                 18
  T4               10                  9
                    vv
clus                  N0  N1  N2  N3
  20Q GAIN MUTATED   124  55  16   0
  20Q GAIN WILD-TYPE 131  54  18   5
D37V5, multiclass
    clus
vv   20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  N0              124                131
  N1               55                 54
  N2               16                 18
  N3                0                  5
                    vv
clus                  M0  M1  MX
  20Q GAIN MUTATED   171   4  22
  20Q GAIN WILD-TYPE 178   1  27
D37V6, multiclass
    clus
vv   20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  M0              171                178
  M1                4                  1
  MX               22                 27
D37V7, binary
                    cls
clus                   0   1
  20Q GAIN MUTATED    40 159
  20Q GAIN WILD-TYPE  64 146
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q GAIN MUTATED     40  159
  20Q GAIN WILD-TYPE   64  146
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  FEMALE               40                 64
  MALE                159                146
D37V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  20Q GAIN MUTATED                                       8
  20Q GAIN WILD-TYPE                                     4
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  20Q GAIN MUTATED                                        2
  20Q GAIN WILD-TYPE                                      4
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  20Q GAIN MUTATED                                         1
  20Q GAIN WILD-TYPE                                       0
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  20Q GAIN MUTATED                                                           188
  20Q GAIN WILD-TYPE                                                         202
D37V9, multiclass
                                                             clus
vv                                                            20Q GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      8
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     2
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              188
                                                             clus
vv                                                            20Q GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                        4
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       4
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                202
D37V10, binary
                    cls
clus                   0   1
  20Q GAIN MUTATED     8 191
  20Q GAIN WILD-TYPE   5 205
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q GAIN MUTATED      8  191
  20Q GAIN WILD-TYPE    5  205
     clus
vv    20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  NO                 8                  5
  YES              191                205
D37V11, continuous
D37V12, continuous
                    vv
clus                  R0  R1  R2  RX
  20Q GAIN MUTATED   163   4   1   7
  20Q GAIN WILD-TYPE 169   4   3  11
D37V13, multiclass
    clus
vv   20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  R0              163                169
  R1                4                  4
  R2                1                  3
  RX                7                 11

Clustering(38) Variable = 21Q GAIN MUTATION ANALYSIS
D38V1, survival
                    sevent
clus2                  0   1
  21Q GAIN MUTATED    29  14
  21Q GAIN WILD-TYPE 215 125
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                43                340 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                14                125 
$`21Q GAIN MUTATED`
TCGA-18-3410 TCGA-21-1077 TCGA-21-1081 TCGA-21-1082 TCGA-21-A5DI TCGA-22-1011 
        4.80        34.78         9.34       119.80        32.19         1.74 
TCGA-22-4595 TCGA-22-A5C4 TCGA-33-4566 TCGA-33-4583 TCGA-33-4587 TCGA-34-2596 
       24.13         0.95       173.82       141.34        54.44         2.63 
TCGA-34-2605 TCGA-34-5240 TCGA-34-5928 TCGA-39-5028 TCGA-43-6143 TCGA-43-6647 
       28.96        12.00        18.15         1.71        12.36        24.89 
TCGA-43-A475 TCGA-56-7221 TCGA-56-8504 TCGA-56-A4BY TCGA-60-2706 TCGA-60-2714 
        9.73         0.99         5.85         0.99        92.71        50.33 
TCGA-60-2724 TCGA-66-2756 TCGA-66-2767 TCGA-66-2770 TCGA-66-2783 TCGA-77-6844 
       23.57         0.99         2.01        23.01        24.95        75.09 
TCGA-77-7139 TCGA-77-8130 TCGA-77-8139 TCGA-77-8143 TCGA-85-6560 TCGA-85-7844 
       89.98        82.92       104.09        26.40         0.36         1.25 
TCGA-85-7950 TCGA-85-8277 TCGA-85-8353 TCGA-92-7340 TCGA-96-7545 TCGA-NC-A5HG 
        1.97         0.36         1.78         2.70        44.19        50.89 
TCGA-NC-A5HI 
       37.32 

$`21Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.01        79.46        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.64        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.54         3.02        27.19       119.54 
TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1078 TCGA-21-1079 
       46.88        99.16        70.16        60.89        15.58        31.73 
TCGA-21-1080 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 
      122.43         8.78        31.63        88.11        41.69        33.93 
TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 
       10.82        19.99         7.33        14.93         4.31        64.21 
TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 
       14.10        27.02        48.82        20.48        35.08        48.33 
TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 
        0.56        38.17        34.75        13.12        32.02        19.30 
TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
        9.57        11.77        31.73        64.93        63.55        14.63 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 
       44.25         0.79        54.28        71.34        79.20        11.74 
TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 
       18.84        30.12        62.86        56.32        16.64         7.63 
TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4582 TCGA-33-4586 TCGA-33-4589 
      114.05        97.94        43.10       103.53        14.07        10.82 
TCGA-33-6737 TCGA-33-6738 TCGA-34-2600 TCGA-34-2604 TCGA-34-2608 TCGA-34-2609 
       19.76        27.02        61.61        31.50        32.88        31.27 
TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5241 
       50.24        67.79        56.38         9.07        23.24        14.07 
TCGA-34-5927 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 
       30.94         4.96         1.12         3.95         0.43         0.39 
TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        6.58         8.12         7.46         7.82         6.81         0.39 
TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 
        3.39        47.80        74.07        44.75        68.58        55.20 
TCGA-39-5024 TCGA-39-5027 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 
       70.03        60.79        24.33         1.94        27.39        36.39 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-39-5040 TCGA-43-2576 
       15.58        35.64        35.70        17.88        17.06        40.21 
TCGA-43-2578 TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 
       22.49        38.66        27.02        33.11        11.47        18.05 
TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 
       10.19         5.46         3.81         6.97         7.76        66.51 
TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 TCGA-43-A474 TCGA-43-A56U TCGA-43-A56V 
       13.38        11.77         2.93        11.61        14.20        12.03 
TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 
        9.99        10.65        13.91         0.39         0.39        29.95 
TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 
       17.79         5.46        30.35         8.75        27.45        28.96 
TCGA-56-5897 TCGA-56-5898 TCGA-56-6545 TCGA-56-6546 TCGA-56-7222 TCGA-56-7223 
        0.10        18.25         2.04         0.62         0.43         0.99 
TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 TCGA-56-8503 
        1.45         1.32         0.85         0.20         0.03         1.35 
TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 
        1.81         1.18         2.07         0.56         0.53         1.12 
TCGA-56-A49D TCGA-56-A4BW TCGA-56-A4BX TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DR 
        1.25         0.07         1.51         0.82         0.13         0.13 
TCGA-56-A5DS TCGA-58-8386 TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 
        0.26         0.03        13.25        12.43        29.95        71.24 
TCGA-58-8392 TCGA-58-8393 TCGA-58-A46J TCGA-58-A46K TCGA-58-A46L TCGA-58-A46M 
       16.47        34.78        64.87        34.36        36.59        23.24 
TCGA-58-A46N TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 
       17.75        21.11         3.58        12.23        10.22        96.82 
TCGA-60-2704 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       37.94        21.73        80.45        49.48        66.54        41.42 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 
        9.01        56.91        35.34        48.49        42.64         3.19 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       32.32        29.85        35.90        26.83        11.77        16.96 
TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 
       43.10         2.01        21.07         0.99         1.02         2.01 
TCGA-66-2755 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        0.92         0.99        21.01        25.05         0.99         2.01 
TCGA-66-2766 TCGA-66-2768 TCGA-66-2769 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        1.02         2.01         7.07        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2785 TCGA-66-2786 
       19.00        12.03         3.98        12.00         1.97        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 
       40.01        22.98         4.04        22.98         5.03        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 
       10.06        54.08         4.01        49.05         2.73         6.64 
TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 TCGA-68-A59I TCGA-68-A59J TCGA-77-6842 
        6.94         8.02         3.16         3.98         3.42        29.56 
TCGA-77-6843 TCGA-77-6845 TCGA-77-7138 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 
       73.12        23.28        11.18        20.78         0.49        42.28 
TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 
       70.13       106.95         0.16        46.78        15.75         6.51 
TCGA-77-8008 TCGA-77-8009 TCGA-77-8128 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 
       86.76        53.95        37.81        12.59        53.92        39.09 
TCGA-77-8138 TCGA-77-8140 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 
       17.72        11.54        27.39         6.97         9.63        54.41 
TCGA-77-8153 TCGA-77-8154 TCGA-77-8156 TCGA-77-A5FZ TCGA-77-A5G3 TCGA-77-A5GB 
       55.36        35.90         0.33       126.18       117.57        30.81 
TCGA-77-A5GH TCGA-85-6175 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 
       23.44         9.67        12.99         1.12         0.59         0.33 
TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 
        1.61         0.03         1.15         0.85         1.97         0.53 
TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8287 TCGA-85-8288 
       16.77        14.07        16.87         0.43         1.45         1.78 
TCGA-85-8350 TCGA-85-8351 TCGA-85-8352 TCGA-85-8354 TCGA-85-8355 TCGA-85-8479 
        1.97         1.81         2.20         2.01         2.01         0.72 
TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL 
        0.69        14.63        13.94         0.10        15.62         0.49 
TCGA-85-A4QR TCGA-85-A50M TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 TCGA-90-7766 
        0.82         0.62         0.79         0.43        24.92         9.50 
TCGA-90-7767 TCGA-90-7769 TCGA-90-7964 TCGA-90-A4ED TCGA-90-A4EE TCGA-92-7341 
        2.93        11.77        14.07         8.02        10.88         3.48 
TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 
        4.01         5.26         2.30         2.86         0.16        11.70 
TCGA-96-7544 TCGA-96-8169 TCGA-96-8170 TCGA-96-A4JK TCGA-96-A4JL TCGA-98-7454 
       39.88         6.21         6.94         8.98         6.02         8.42 
TCGA-98-8020 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 TCGA-J1-A4AH TCGA-L3-A4E7 
        2.76        13.58         7.36        10.13         7.30         1.15 
TCGA-L3-A524 TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE 
       14.76         1.18         2.73        56.61 

  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
              0.36               0.03 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
            173.82             126.18 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
            23.010             13.185 
[1] "0.4 - 173.8 (23.0)" "0.0 - 126.2 (13.2)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
  "21Q GAIN MUTATED"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED"   "21Q GAIN MUTATED" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56U 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-43-A56V         TCGA-46-3768         TCGA-46-6025 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-46-6026         TCGA-51-4079         TCGA-51-4080 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-51-4081         TCGA-52-7622         TCGA-52-7809 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-52-7810         TCGA-52-7811         TCGA-52-7812 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-5898 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-56-A49D         TCGA-56-A4BW         TCGA-56-A4BX 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-56-A4BY         TCGA-56-A4ZJ         TCGA-56-A4ZK 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-56-A5DR         TCGA-56-A5DS         TCGA-58-8386 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-68-A59I 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-68-A59J         TCGA-77-6842         TCGA-77-6843 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
  "21Q GAIN MUTATED"   "21Q GAIN MUTATED" 
[1] "hr=" "1.7"
D38V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  21Q GAIN MUTATED         1        3       12        0         3        12
  21Q GAIN WILD-TYPE       0       66      124        1        47        58
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  21Q GAIN MUTATED           10          4        0
  21Q GAIN WILD-TYPE         44         16        5
D38V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  21Q GAIN MUTATED     5  28  10   3
  21Q GAIN WILD-TYPE  90 222  35  16
D38V4, multiclass
    clus
vv   21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  T1                5                 90
  T2               28                222
  T3               10                 35
  T4                3                 16
                    vv
clus                  N0  N1  N2  N3
  21Q GAIN MUTATED    23  18   3   2
  21Q GAIN WILD-TYPE 232  91  31   3
D38V5, multiclass
    clus
vv   21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  N0               23                232
  N1               18                 91
  N2                3                 31
  N3                2                  3
                    vv
clus                  M0  M1  MX
  21Q GAIN MUTATED    38   0   6
  21Q GAIN WILD-TYPE 311   5  43
D38V6, multiclass
    clus
vv   21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  M0               38                311
  M1                0                  5
  MX                6                 43
D38V7, binary
                    cls
clus                   0   1
  21Q GAIN MUTATED     8  38
  21Q GAIN WILD-TYPE  96 267
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q GAIN MUTATED      8   38
  21Q GAIN WILD-TYPE   96  267
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  FEMALE                8                 96
  MALE                 38                267
D38V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  21Q GAIN MUTATED                                       3
  21Q GAIN WILD-TYPE                                     9
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  21Q GAIN MUTATED                                        0
  21Q GAIN WILD-TYPE                                      6
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  21Q GAIN MUTATED                                         1
  21Q GAIN WILD-TYPE                                       0
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  21Q GAIN MUTATED                                                            42
  21Q GAIN WILD-TYPE                                                         348
D38V9, multiclass
                                                             clus
vv                                                            21Q GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      3
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     0
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               42
                                                             clus
vv                                                            21Q GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                        9
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       6
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                348
D38V10, binary
                    cls
clus                   0   1
  21Q GAIN MUTATED     3  43
  21Q GAIN WILD-TYPE  10 353
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q GAIN MUTATED      3   43
  21Q GAIN WILD-TYPE   10  353
     clus
vv    21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  NO                 3                 10
  YES               43                353
D38V11, continuous
D38V12, continuous
                    vv
clus                  R0  R1  R2  RX
  21Q GAIN MUTATED    33   2   1   5
  21Q GAIN WILD-TYPE 299   6   3  13
D38V13, multiclass
    clus
vv   21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  R0               33                299
  R1                2                  6
  R2                1                  3
  RX                5                 13

Clustering(39) Variable = 22Q GAIN MUTATION ANALYSIS
D39V1, survival
                    sevent
clus2                  0   1
  22Q GAIN MUTATED   110  63
  22Q GAIN WILD-TYPE 134  76
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
               173                210 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                63                 76 
$`22Q GAIN MUTATED`
TCGA-18-3408 TCGA-18-3409 TCGA-18-3411 TCGA-18-3412 TCGA-18-3414 TCGA-21-1072 
       81.01        79.46        46.52        11.34        13.02        99.16 
TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1079 TCGA-21-1082 TCGA-21-1083 
       70.16        60.89        34.78        31.73       119.80         8.78 
TCGA-21-5784 TCGA-21-5786 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-4591 
       41.69        33.93         4.31         1.74        14.10        20.48 
TCGA-22-4593 TCGA-22-4595 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-5477 
       35.08        24.13        34.75        13.12        32.02        44.25 
TCGA-22-5479 TCGA-22-5481 TCGA-22-5482 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 
       54.28        79.20        11.74        56.32        16.64         7.63 
TCGA-33-4586 TCGA-33-4589 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2605 
       14.07        10.82        27.02         2.63        61.61        28.96 
TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 
       32.88        31.27        50.24         9.07        23.24        12.00 
TCGA-34-5241 TCGA-37-4130 TCGA-37-4133 TCGA-37-4141 TCGA-39-5019 TCGA-39-5021 
       14.07         8.12         7.82         0.39        44.75        68.58 
TCGA-39-5034 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-3394 TCGA-43-3920 
       36.39        35.64        35.70        17.88        27.02        33.11 
TCGA-43-5668 TCGA-43-5670 TCGA-43-6647 TCGA-43-6770 TCGA-43-7657 TCGA-43-8118 
       11.47        18.05        24.89        10.19         7.76         2.93 
TCGA-43-A474 TCGA-43-A475 TCGA-43-A56V TCGA-46-3768 TCGA-46-6025 TCGA-52-7809 
       11.61         9.73        12.03         9.99        10.65         5.46 
TCGA-52-7810 TCGA-52-7811 TCGA-56-1622 TCGA-56-5897 TCGA-56-5898 TCGA-56-6545 
       30.35         8.75        28.96         0.10        18.25         2.04 
TCGA-56-7221 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 
        0.99         1.45         1.32         0.85         0.20         0.03 
TCGA-56-8503 TCGA-56-8504 TCGA-56-8622 TCGA-56-8626 TCGA-56-8629 TCGA-56-A49D 
        1.35         5.85         1.81         0.56         1.12         1.25 
TCGA-56-A4BW TCGA-56-A4BX TCGA-56-A4ZJ TCGA-56-A5DR TCGA-56-A5DS TCGA-58-8386 
        0.07         1.51         0.82         0.13         0.26         0.03 
TCGA-58-8387 TCGA-58-8390 TCGA-58-A46M TCGA-58-A46N TCGA-60-2703 TCGA-60-2704 
       13.25        29.95        23.24        17.75        96.82        37.94 
TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2711 TCGA-60-2714 TCGA-60-2719 
       92.71        21.73        80.45        41.42        50.33        42.64 
TCGA-60-2720 TCGA-60-2722 TCGA-60-2723 TCGA-60-2725 TCGA-60-2726 TCGA-66-2734 
        3.19        29.85        35.90        26.83        11.77        43.10 
TCGA-66-2737 TCGA-66-2742 TCGA-66-2755 TCGA-66-2758 TCGA-66-2763 TCGA-66-2769 
        2.01        21.07         0.92        21.01         0.99         7.07 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2781 TCGA-66-2783 TCGA-66-2785 TCGA-66-2788 
        3.02         2.01         3.98        24.95         1.97        22.98 
TCGA-66-2792 TCGA-66-2794 TCGA-66-2800 TCGA-68-A59J TCGA-77-6842 TCGA-77-6845 
       30.02        54.08        49.05         3.42        29.56        23.28 
TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7338 TCGA-77-7463 TCGA-77-8007 
       89.98        20.78         0.49         0.16        46.78         6.51 
TCGA-77-8008 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8140 
       86.76        37.81        82.92        12.59        53.92        11.54 
TCGA-77-8143 TCGA-77-8145 TCGA-77-8153 TCGA-77-8156 TCGA-77-A5GB TCGA-77-A5GH 
       26.40         6.97        55.36         0.33        30.81        23.44 
TCGA-85-6175 TCGA-85-6561 TCGA-85-7696 TCGA-85-7698 TCGA-85-8052 TCGA-85-8070 
        9.67        12.99         0.59         1.61         0.53        16.77 
TCGA-85-8276 TCGA-85-8277 TCGA-85-8350 TCGA-85-8354 TCGA-85-8481 TCGA-85-8580 
        0.43         0.36         1.97         2.01         0.69        14.63 
TCGA-85-A4QR TCGA-85-A50M TCGA-90-7767 TCGA-90-7769 TCGA-92-7341 TCGA-94-7033 
        0.82         0.62         2.93        11.77         3.48         2.86 
TCGA-94-7943 TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 TCGA-96-A4JK TCGA-98-8020 
       11.70        44.19         6.21         6.94         8.98         2.76 
TCGA-98-8022 TCGA-J1-A4AH TCGA-LA-A446 TCGA-NC-A5HG TCGA-NC-A5HI 
        7.36         7.30         1.18        50.89        37.32 

$`22Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3410 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 
       12.16         4.47         4.80        59.51        28.34        24.92 
TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 
        1.64        43.76         6.15         2.79        90.54         3.02 
TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1078 TCGA-21-1080 TCGA-21-1081 
       27.19       119.54        46.88        15.58       122.43         9.34 
TCGA-21-5782 TCGA-21-5783 TCGA-21-5787 TCGA-21-A5DI TCGA-22-0940 TCGA-22-0944 
       31.63        88.11        10.82        32.19        19.99         7.33 
TCGA-22-1000 TCGA-22-1005 TCGA-22-1016 TCGA-22-1017 TCGA-22-4594 TCGA-22-4596 
       14.93        64.21        27.02        48.82        48.33         0.56 
TCGA-22-4599 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       38.17        19.30         9.57        11.77        31.73        64.93 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5478 TCGA-22-5480 TCGA-22-5483 TCGA-22-5485 
       63.55        14.63         0.79        71.34        18.84        30.12 
TCGA-22-5489 TCGA-22-A5C4 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 
       62.86         0.95       114.05        97.94        43.10       173.82 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4587 TCGA-33-6737 TCGA-34-2604 TCGA-34-5232 
      103.53       141.34        54.44        19.76        31.50        67.79 
TCGA-34-5234 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 
       56.38        30.94        18.15         4.96         1.12         3.95 
TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4132 TCGA-37-4135 TCGA-37-5819 
        0.43         0.39         6.58         7.46         6.81         3.39 
TCGA-39-5011 TCGA-39-5016 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       47.80        74.07        55.20        70.03        60.79         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5040 TCGA-43-2576 
       24.33         1.94        27.39        15.58        17.06        40.21 
TCGA-43-2578 TCGA-43-2581 TCGA-43-6143 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 
       22.49        38.66        12.36         5.46         3.81         6.97 
TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-43-A56U TCGA-46-6026 TCGA-51-4079 
       66.51        13.38        11.77        14.20        13.91         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7812 TCGA-56-6546 TCGA-56-7222 
        0.39        29.95        17.79        27.45         0.62         0.43 
TCGA-56-7223 TCGA-56-8624 TCGA-56-8625 TCGA-56-8628 TCGA-56-A4BY TCGA-56-A4ZK 
        0.99         1.18         2.07         0.53         0.99         0.13 
TCGA-58-8388 TCGA-58-8391 TCGA-58-8392 TCGA-58-8393 TCGA-58-A46J TCGA-58-A46K 
       12.43        71.24        16.47        34.78        64.87        34.36 
TCGA-58-A46L TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2709 
       36.59        21.11         3.58        12.23        10.22        49.48 
TCGA-60-2710 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2716 TCGA-60-2721 
       66.54         9.01        56.91        35.34        48.49        32.32 
TCGA-60-2724 TCGA-66-2727 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2756 
       23.57        16.96         0.99         1.02         2.01         0.99 
TCGA-66-2757 TCGA-66-2759 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
        0.99        25.05         2.01         1.02         2.01         2.01 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2778 TCGA-66-2780 TCGA-66-2782 TCGA-66-2786 
       23.01        19.00        19.00        12.03        12.00        25.97 
TCGA-66-2787 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2793 TCGA-66-2795 
       40.01         4.04        22.98         5.03        10.06         4.01 
TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 TCGA-68-A59I 
        2.73         6.64         6.94         8.02         3.16         3.98 
TCGA-77-6843 TCGA-77-6844 TCGA-77-7138 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 
       73.12        75.09        11.18        42.28        70.13       106.95 
TCGA-77-7465 TCGA-77-8009 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8144 
       15.75        53.95        39.09        17.72       104.09        27.39 
TCGA-77-8148 TCGA-77-8150 TCGA-77-8154 TCGA-77-A5FZ TCGA-77-A5G3 TCGA-85-6560 
        9.63        54.41        35.90       126.18       117.57         0.36 
TCGA-85-6798 TCGA-85-7697 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 
        1.12         0.33         0.03         1.15         1.25         1.97 
TCGA-85-8048 TCGA-85-8049 TCGA-85-8071 TCGA-85-8072 TCGA-85-8287 TCGA-85-8288 
        0.85         1.97        14.07        16.87         1.45         1.78 
TCGA-85-8351 TCGA-85-8352 TCGA-85-8353 TCGA-85-8355 TCGA-85-8479 TCGA-85-8582 
        1.81         2.20         1.78         2.01         0.72        13.94 
TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 
        0.10        15.62         0.49         0.79         0.43        24.92 
TCGA-90-7766 TCGA-90-7964 TCGA-90-A4ED TCGA-90-A4EE TCGA-92-7340 TCGA-92-8063 
        9.50        14.07         8.02        10.88         2.70         4.01 
TCGA-92-8064 TCGA-92-8065 TCGA-94-7557 TCGA-96-7544 TCGA-96-A4JL TCGA-98-7454 
        5.26         2.30         0.16        39.88         6.02         8.42 
TCGA-98-8021 TCGA-98-8023 TCGA-L3-A4E7 TCGA-L3-A524 TCGA-MF-A522 TCGA-NC-A5HE 
       13.58        10.13         1.15        14.76         2.73        56.61 

  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
              0.03               0.03 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
            119.80             173.82 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
            13.020             13.925 
[1] "0.0 - 119.8 (13.0)" "0.0 - 173.8 (13.9)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-56-A49D         TCGA-56-A4BW         TCGA-56-A4BX 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-56-A4BY         TCGA-56-A4ZJ         TCGA-56-A4ZK 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56U 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-43-A56V         TCGA-46-3768         TCGA-46-6025 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-46-6026         TCGA-51-4079         TCGA-51-4080 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-51-4081         TCGA-52-7622         TCGA-52-7809 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-52-7810         TCGA-52-7811         TCGA-52-7812 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-5898 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-56-A49D         TCGA-56-A4BW         TCGA-56-A4BX 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-56-A4BY         TCGA-56-A4ZJ         TCGA-56-A4ZK 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-56-A5DR         TCGA-56-A5DS         TCGA-58-8386 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-68-A59I 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-68-A59J         TCGA-77-6842         TCGA-77-6843 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8153         TCGA-77-8154 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5FZ         TCGA-77-A5G3 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-77-A5GB         TCGA-77-A5GH         TCGA-85-6175 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
[1] "hr=" "1.2"
D39V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  22Q GAIN MUTATED         0       23       70        0        22        37
  22Q GAIN WILD-TYPE       1       46       66        1        28        33
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  22Q GAIN MUTATED           19          8        3
  22Q GAIN WILD-TYPE         35         12        2
D39V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  22Q GAIN MUTATED    35 122  18   9
  22Q GAIN WILD-TYPE  60 128  27  10
D39V4, multiclass
    clus
vv   22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  T1               35                 60
  T2              122                128
  T3               18                 27
  T4                9                 10
                    vv
clus                  N0  N1  N2  N3
  22Q GAIN MUTATED   119  46  13   1
  22Q GAIN WILD-TYPE 136  63  21   4
D39V5, multiclass
    clus
vv   22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  N0              119                136
  N1               46                 63
  N2               13                 21
  N3                1                  4
                    vv
clus                  M0  M1  MX
  22Q GAIN MUTATED   157   3  22
  22Q GAIN WILD-TYPE 192   2  27
D39V6, multiclass
    clus
vv   22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  M0              157                192
  M1                3                  2
  MX               22                 27
D39V7, binary
                    cls
clus                   0   1
  22Q GAIN MUTATED    45 139
  22Q GAIN WILD-TYPE  59 166
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q GAIN MUTATED     45  139
  22Q GAIN WILD-TYPE   59  166
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  FEMALE               45                 59
  MALE                139                166
D39V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  22Q GAIN MUTATED                                       5
  22Q GAIN WILD-TYPE                                     7
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  22Q GAIN MUTATED                                        1
  22Q GAIN WILD-TYPE                                      5
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  22Q GAIN MUTATED                                         0
  22Q GAIN WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  22Q GAIN MUTATED                                                           178
  22Q GAIN WILD-TYPE                                                         212
D39V9, multiclass
                                                             clus
vv                                                            22Q GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      5
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              178
                                                             clus
vv                                                            22Q GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                        7
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                212
D39V10, binary
                    cls
clus                   0   1
  22Q GAIN MUTATED     5 179
  22Q GAIN WILD-TYPE   8 217
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q GAIN MUTATED      5  179
  22Q GAIN WILD-TYPE    8  217
     clus
vv    22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  NO                 5                  8
  YES              179                217
D39V11, continuous
D39V12, continuous
                    vv
clus                  R0  R1  R2  RX
  22Q GAIN MUTATED   154   4   1   3
  22Q GAIN WILD-TYPE 178   4   3  15
D39V13, multiclass
    clus
vv   22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  R0              154                178
  R1                4                  4
  R2                1                  3
  RX                3                 15

Clustering(40) Variable = XQ GAIN MUTATION ANALYSIS
D40V1, survival
                   sevent
clus2                 0   1
  XQ GAIN MUTATED    41  20
  XQ GAIN WILD-TYPE 203 119
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
               61               322 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
               20               119 
$`XQ GAIN MUTATED`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3417 TCGA-18-3421 TCGA-18-4083 TCGA-21-1081 
       12.16         4.47        24.92        43.76         6.15         9.34 
TCGA-21-5786 TCGA-22-1012 TCGA-22-4593 TCGA-22-4595 TCGA-22-5483 TCGA-33-4532 
       33.93        14.10        35.08        24.13        18.84         7.63 
TCGA-33-4566 TCGA-34-2596 TCGA-34-5240 TCGA-34-5927 TCGA-34-5928 TCGA-37-5819 
      173.82         2.63        12.00        30.94        18.15         3.39 
TCGA-39-5019 TCGA-43-3920 TCGA-43-5670 TCGA-43-7657 TCGA-43-A475 TCGA-51-4079 
       44.75        33.11        18.05         7.76         9.73         0.39 
TCGA-56-7223 TCGA-56-7730 TCGA-56-8504 TCGA-56-8624 TCGA-56-8629 TCGA-56-A4BW 
        0.99         0.20         5.85         1.18         1.12         0.07 
TCGA-58-8386 TCGA-58-A46M TCGA-58-A46N TCGA-60-2695 TCGA-60-2703 TCGA-60-2711 
        0.03        23.24        17.75        21.11        96.82        41.42 
TCGA-60-2719 TCGA-60-2724 TCGA-66-2756 TCGA-66-2758 TCGA-66-2766 TCGA-66-2769 
       42.64        23.57         0.99        21.01         1.02         7.07 
TCGA-66-2781 TCGA-66-2792 TCGA-66-2793 TCGA-77-6842 TCGA-77-7138 TCGA-77-7140 
        3.98        30.02        10.06        29.56        11.18        20.78 
TCGA-77-7335 TCGA-77-8009 TCGA-77-8156 TCGA-85-6561 TCGA-85-8070 TCGA-85-8072 
       70.13        53.95         0.33        12.99        16.77        16.87 
TCGA-85-8350 TCGA-85-8354 TCGA-85-A50M TCGA-92-7341 TCGA-94-7557 TCGA-96-A4JK 
        1.97         2.01         0.62         3.48         0.16         8.98 
TCGA-J1-A4AH 
        7.30 

$`XQ GAIN WILD-TYPE`
TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 TCGA-18-3414 
       81.01        79.46         4.80        46.52        11.34        13.02 
TCGA-18-3415 TCGA-18-3416 TCGA-18-3419 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 
       59.51        28.34         1.64         2.79        90.54         3.02 
TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 
       27.19       119.54        46.88        99.16        70.16        60.89 
TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 TCGA-21-1082 TCGA-21-1083 
       34.78        15.58        31.73       122.43       119.80         8.78 
TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-5787 TCGA-21-A5DI TCGA-22-0940 
       31.63        88.11        41.69        10.82        32.19        19.99 
TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1016 
        7.33        14.93         4.31        64.21         1.74        27.02 
TCGA-22-1017 TCGA-22-4591 TCGA-22-4594 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 
       48.82        20.48        48.33         0.56        38.17        34.75 
TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 
       13.12        32.02        19.30         9.57        11.77        31.73 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 
       64.93        63.55        14.63        44.25         0.79        54.28 
TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 
       71.34        79.20        11.74        30.12        62.86        56.32 
TCGA-22-5492 TCGA-22-A5C4 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4582 
       16.64         0.95       114.05        97.94        43.10       103.53 
TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 
      141.34        14.07        54.44        10.82        19.76        27.02 
TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 
       61.61        31.50        28.96        32.88        31.27        50.24 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5241 TCGA-34-5929 
       67.79        56.38         9.07        23.24        14.07         4.96 
TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 
        1.12         3.95         0.43         0.39         6.58         8.12 
TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-39-5011 TCGA-39-5016 
        7.46         7.82         6.81         0.39        47.80        74.07 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
       68.58        55.20        70.03        60.79         1.71        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
        1.94        27.39        36.39        15.58        35.64        35.70 
TCGA-39-5039 TCGA-39-5040 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-3394 
       17.88        17.06        40.21        22.49        38.66        27.02 
TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 
       11.47        12.36        24.89        10.19         5.46         3.81 
TCGA-43-7656 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 TCGA-43-A474 
        6.97        66.51        13.38        11.77         2.93        11.61 
TCGA-43-A56U TCGA-43-A56V TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4080 
       14.20        12.03         9.99        10.65        13.91         0.39 
TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 
       29.95        17.79         5.46        30.35         8.75        27.45 
TCGA-56-1622 TCGA-56-5897 TCGA-56-5898 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 
       28.96         0.10        18.25         2.04         0.62         0.99 
TCGA-56-7222 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-56-7822 TCGA-56-8503 
        0.43         1.45         1.32         0.85         0.03         1.35 
TCGA-56-8622 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 TCGA-56-A49D TCGA-56-A4BX 
        1.81         2.07         0.56         0.53         1.25         1.51 
TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DR TCGA-56-A5DS TCGA-58-8387 
        0.99         0.82         0.13         0.13         0.26        13.25 
TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 TCGA-58-8393 TCGA-58-A46J 
       12.43        29.95        71.24        16.47        34.78        64.87 
TCGA-58-A46K TCGA-58-A46L TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2704 
       34.36        36.59         3.58        12.23        10.22        37.94 
TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2712 
       92.71        21.73        80.45        49.48        66.54         9.01 
TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2720 TCGA-60-2721 
       56.91        50.33        35.34        48.49         3.19        32.32 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 
       29.85        35.90        26.83        11.77        16.96        43.10 
TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 
        2.01        21.07         0.99         1.02         2.01         0.92 
TCGA-66-2757 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2767 TCGA-66-2768 
        0.99        25.05         0.99         2.01         2.01         2.01 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
       23.01        19.00         3.02         2.01        19.00        12.03 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
       12.00        24.95         1.97        25.97        40.01        22.98 
TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        4.04        22.98         5.03        54.08         4.01        49.05 
TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 TCGA-68-A59I 
        2.73         6.64         6.94         8.02         3.16         3.98 
TCGA-68-A59J TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7139 TCGA-77-7141 
        3.42        73.12        75.09        23.28        89.98         0.49 
TCGA-77-7142 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 
       42.28       106.95         0.16        46.78        15.75         6.51 
TCGA-77-8008 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 
       86.76        37.81        82.92        12.59        53.92        39.09 
TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 
       17.72       104.09        11.54        26.40        27.39         6.97 
TCGA-77-8148 TCGA-77-8150 TCGA-77-8153 TCGA-77-8154 TCGA-77-A5FZ TCGA-77-A5G3 
        9.63        54.41        55.36        35.90       126.18       117.57 
TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6175 TCGA-85-6560 TCGA-85-6798 TCGA-85-7696 
       30.81        23.44         9.67         0.36         1.12         0.59 
TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 
        0.33         1.61         0.03         1.15         1.25         1.97 
TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8071 TCGA-85-8276 TCGA-85-8277 
        0.85         1.97         0.53        14.07         0.43         0.36 
TCGA-85-8287 TCGA-85-8288 TCGA-85-8351 TCGA-85-8352 TCGA-85-8353 TCGA-85-8355 
        1.45         1.78         1.81         2.20         1.78         2.01 
TCGA-85-8479 TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 TCGA-85-8666 
        0.72         0.69        14.63        13.94         0.10        15.62 
TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 TCGA-90-7766 
        0.49         0.82         0.79         0.43        24.92         9.50 
TCGA-90-7767 TCGA-90-7769 TCGA-90-7964 TCGA-90-A4ED TCGA-90-A4EE TCGA-92-7340 
        2.93        11.77        14.07         8.02        10.88         2.70 
TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7943 TCGA-96-7544 
        4.01         5.26         2.30         2.86        11.70        39.88 
TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 TCGA-96-A4JL TCGA-98-7454 TCGA-98-8020 
       44.19         6.21         6.94         6.02         8.42         2.76 
TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 TCGA-L3-A4E7 TCGA-L3-A524 TCGA-LA-A446 
       13.58         7.36        10.13         1.15        14.76         1.18 
TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HG TCGA-NC-A5HI 
        2.73        56.61        50.89        37.32 

  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
             0.03              0.03 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
           173.82            141.34 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
           12.000            13.925 
[1] "0.0 - 173.8 (12.0)" "0.0 - 141.3 (13.9)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "XQ GAIN MUTATED"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "XQ GAIN MUTATED"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED"   "XQ GAIN MUTATED" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED"   "XQ GAIN MUTATED"   "XQ GAIN MUTATED" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED"   "XQ GAIN MUTATED" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "XQ GAIN MUTATED"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "XQ GAIN MUTATED"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED"   "XQ GAIN MUTATED" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED"   "XQ GAIN MUTATED"   "XQ GAIN MUTATED" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED"   "XQ GAIN MUTATED" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "XQ GAIN MUTATED"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "XQ GAIN MUTATED"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED"   "XQ GAIN MUTATED" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED"   "XQ GAIN MUTATED"   "XQ GAIN MUTATED" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED"   "XQ GAIN MUTATED" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D40V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  XQ GAIN MUTATED         0        6       23        0        10        13
  XQ GAIN WILD-TYPE       1       63      113        1        40        57
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  XQ GAIN MUTATED            5          4        2
  XQ GAIN WILD-TYPE         49         16        3
D40V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  XQ GAIN MUTATED     8  44   7   4
  XQ GAIN WILD-TYPE  87 206  38  15
D40V4, multiclass
    clus
vv   XQ GAIN MUTATED XQ GAIN WILD-TYPE
  T1               8                87
  T2              44               206
  T3               7                38
  T4               4                15
                   vv
clus                 N0  N1  N2  N3
  XQ GAIN MUTATED    39  18   4   0
  XQ GAIN WILD-TYPE 216  91  30   5
D40V5, multiclass
    clus
vv   XQ GAIN MUTATED XQ GAIN WILD-TYPE
  N0              39               216
  N1              18                91
  N2               4                30
  N3               0                 5
                   vv
clus                 M0  M1  MX
  XQ GAIN MUTATED    52   2   7
  XQ GAIN WILD-TYPE 297   3  42
D40V6, multiclass
    clus
vv   XQ GAIN MUTATED XQ GAIN WILD-TYPE
  M0              52               297
  M1               2                 3
  MX               7                42
D40V7, binary
                   cls
clus                  0   1
  XQ GAIN MUTATED    13  50
  XQ GAIN WILD-TYPE  91 255
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ GAIN MUTATED     13   50
  XQ GAIN WILD-TYPE   91  255
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  FEMALE              13                91
  MALE                50               255
D40V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  XQ GAIN MUTATED                                       3
  XQ GAIN WILD-TYPE                                     9
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  XQ GAIN MUTATED                                        1
  XQ GAIN WILD-TYPE                                      5
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  XQ GAIN MUTATED                                         0
  XQ GAIN WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  XQ GAIN MUTATED                                                            59
  XQ GAIN WILD-TYPE                                                         331
D40V9, multiclass
                                                             clus
vv                                                            XQ GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     3
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              59
                                                             clus
vv                                                            XQ GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       9
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               331
D40V10, binary
                   cls
clus                  0   1
  XQ GAIN MUTATED     2  61
  XQ GAIN WILD-TYPE  11 335
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ GAIN MUTATED      2   61
  XQ GAIN WILD-TYPE   11  335
     clus
vv    XQ GAIN MUTATED XQ GAIN WILD-TYPE
  NO                2                11
  YES              61               335
D40V11, continuous
D40V12, continuous
                   vv
clus                 R0  R1  R2  RX
  XQ GAIN MUTATED    52   2   0   1
  XQ GAIN WILD-TYPE 280   6   4  17
D40V13, multiclass
    clus
vv   XQ GAIN MUTATED XQ GAIN WILD-TYPE
  R0              52               280
  R1               2                 6
  R2               0                 4
  RX               1                17

Clustering(41) Variable = 1P LOSS MUTATION ANALYSIS
D41V1, survival
                   sevent
clus2                 0   1
  1P LOSS MUTATED    75  40
  1P LOSS WILD-TYPE 169  99
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
              115               268 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               40                99 
$`1P LOSS MUTATED`
TCGA-18-3406 TCGA-18-3408 TCGA-18-3415 TCGA-18-5592 TCGA-21-1071 TCGA-21-1072 
       12.16        81.01        59.51         3.02        46.88        99.16 
TCGA-21-1075 TCGA-21-1077 TCGA-21-5786 TCGA-22-0940 TCGA-22-0944 TCGA-22-1012 
       70.16        34.78        33.93        19.99         7.33        14.10 
TCGA-22-1017 TCGA-22-4593 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4604 
       48.82        35.08        24.13         0.56        38.17        13.12 
TCGA-22-4609 TCGA-22-5471 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5479 
        9.57        31.73        63.55        14.63        44.25        54.28 
TCGA-33-4538 TCGA-33-4583 TCGA-33-4586 TCGA-34-2596 TCGA-34-2600 TCGA-34-2605 
       97.94       141.34        14.07         2.63        61.61        28.96 
TCGA-37-4129 TCGA-37-5819 TCGA-39-5016 TCGA-39-5027 TCGA-39-5029 TCGA-39-5034 
        6.58         3.39        74.07        60.79        24.33        36.39 
TCGA-43-2581 TCGA-43-3394 TCGA-43-7657 TCGA-43-A474 TCGA-43-A56V TCGA-46-3768 
       38.66        27.02         7.76        11.61        12.03         9.99 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7811 
       13.91         0.39         0.39        29.95        17.79         8.75 
TCGA-56-1622 TCGA-56-5898 TCGA-56-6545 TCGA-56-7223 TCGA-56-7580 TCGA-56-7730 
       28.96        18.25         2.04         0.99         1.32         0.20 
TCGA-56-7822 TCGA-56-A49D TCGA-56-A4BX TCGA-58-8392 TCGA-58-8393 TCGA-58-A46L 
        0.03         1.25         1.51        16.47        34.78        36.59 
TCGA-58-A46M TCGA-60-2698 TCGA-60-2706 TCGA-60-2707 TCGA-60-2714 TCGA-66-2737 
       23.24        10.22        92.71        21.73        50.33         2.01 
TCGA-66-2758 TCGA-66-2767 TCGA-66-2770 TCGA-66-2773 TCGA-66-2777 TCGA-66-2781 
       21.01         2.01        23.01         3.02         2.01         3.98 
TCGA-66-2787 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
       40.01         5.03        30.02        10.06        54.08         4.01 
TCGA-66-2800 TCGA-68-7755 TCGA-68-7757 TCGA-68-A59J TCGA-77-7139 TCGA-77-7337 
       49.05         2.73         6.94         3.42        89.98       106.95 
TCGA-77-7465 TCGA-77-8009 TCGA-77-8128 TCGA-77-8133 TCGA-77-8148 TCGA-77-8150 
       15.75        53.95        37.81        53.92         9.63        54.41 
TCGA-77-A5G3 TCGA-85-6175 TCGA-85-6561 TCGA-85-7696 TCGA-85-7698 TCGA-85-7843 
      117.57         9.67        12.99         0.59         1.61         1.15 
TCGA-85-8049 TCGA-85-8277 TCGA-85-8287 TCGA-85-8352 TCGA-85-8353 TCGA-85-8580 
        1.97         0.36         1.45         2.20         1.78        14.63 
TCGA-85-A53L TCGA-90-A4EE TCGA-92-7341 TCGA-94-7943 TCGA-96-7544 TCGA-96-7545 
        0.43        10.88         3.48        11.70        39.88        44.19 
TCGA-96-A4JK TCGA-98-8021 TCGA-98-8023 TCGA-L3-A524 TCGA-LA-A446 TCGA-MF-A522 
        8.98        13.58        10.13        14.76         1.18         2.73 
TCGA-NC-A5HE 
       56.61 

$`1P LOSS WILD-TYPE`
TCGA-18-3407 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 TCGA-18-3414 
        4.47        79.46         4.80        46.52        11.34        13.02 
TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 
       28.34        24.92         1.64        43.76         6.15         2.79 
TCGA-18-4721 TCGA-18-5595 TCGA-21-1070 TCGA-21-1076 TCGA-21-1078 TCGA-21-1079 
       90.54        27.19       119.54        60.89        15.58        31.73 
TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 
      122.43         9.34       119.80         8.78        31.63        88.11 
TCGA-21-5784 TCGA-21-5787 TCGA-21-A5DI TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 
       41.69        10.82        32.19        14.93         4.31        64.21 
TCGA-22-1011 TCGA-22-1016 TCGA-22-4591 TCGA-22-4594 TCGA-22-4601 TCGA-22-4605 
        1.74        27.02        20.48        48.33        34.75        32.02 
TCGA-22-4607 TCGA-22-4613 TCGA-22-5472 TCGA-22-5478 TCGA-22-5480 TCGA-22-5481 
       19.30        11.77        64.93         0.79        71.34        79.20 
TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 
       11.74        18.84        30.12        62.86        56.32        16.64 
TCGA-22-A5C4 TCGA-33-4532 TCGA-33-4533 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 
        0.95         7.63       114.05        43.10       173.82       103.53 
TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2604 TCGA-34-2608 
       54.44        10.82        19.76        27.02        31.50        32.88 
TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       31.27        50.24        67.79        56.38         9.07        23.24 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 
       12.00        14.07        30.94        18.15         4.96         1.12 
TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 
        3.95         0.43         0.39         8.12         7.46         7.82 
TCGA-37-4135 TCGA-37-4141 TCGA-39-5011 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 
        6.81         0.39        47.80        44.75        68.58        55.20 
TCGA-39-5024 TCGA-39-5028 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 
       70.03         1.71         1.94        27.39        15.58        35.64 
TCGA-39-5037 TCGA-39-5039 TCGA-39-5040 TCGA-43-2576 TCGA-43-2578 TCGA-43-3920 
       35.70        17.88        17.06        40.21        22.49        33.11 
TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 
       11.47        18.05        12.36        24.89        10.19         5.46 
TCGA-43-6773 TCGA-43-7656 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 
        3.81         6.97        66.51        13.38        11.77         2.93 
TCGA-43-A475 TCGA-43-A56U TCGA-46-6025 TCGA-52-7809 TCGA-52-7810 TCGA-52-7812 
        9.73        14.20        10.65         5.46        30.35        27.45 
TCGA-56-5897 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7579 TCGA-56-7582 
        0.10         0.62         0.99         0.43         1.45         0.85 
TCGA-56-8503 TCGA-56-8504 TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 
        1.35         5.85         1.81         1.18         2.07         0.56 
TCGA-56-8628 TCGA-56-8629 TCGA-56-A4BW TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A4ZK 
        0.53         1.12         0.07         0.99         0.82         0.13 
TCGA-56-A5DR TCGA-56-A5DS TCGA-58-8386 TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 
        0.13         0.26         0.03        13.25        12.43        29.95 
TCGA-58-8391 TCGA-58-A46J TCGA-58-A46K TCGA-58-A46N TCGA-60-2695 TCGA-60-2696 
       71.24        64.87        34.36        17.75        21.11         3.58 
TCGA-60-2697 TCGA-60-2703 TCGA-60-2704 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
       12.23        96.82        37.94        80.45        49.48        66.54 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 
       41.42         9.01        56.91        35.34        48.49        42.64 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
        3.19        32.32        29.85        35.90        23.57        26.83 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 
       11.77        16.96        43.10        21.07         0.99         1.02 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2759 TCGA-66-2763 
        2.01         0.92         0.99         0.99        25.05         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2768 TCGA-66-2769 TCGA-66-2771 TCGA-66-2778 
        2.01         1.02         2.01         7.07        19.00        19.00 
TCGA-66-2780 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2788 
       12.03        12.00        24.95         1.97        25.97        22.98 
TCGA-66-2789 TCGA-66-2790 TCGA-68-7756 TCGA-68-8250 TCGA-68-8251 TCGA-68-A59I 
        4.04        22.98         6.64         8.02         3.16         3.98 
TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7140 
       29.56        73.12        75.09        23.28        11.18        20.78 
TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7338 TCGA-77-7463 TCGA-77-8007 
        0.49        42.28        70.13         0.16        46.78         6.51 
TCGA-77-8008 TCGA-77-8130 TCGA-77-8131 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 
       86.76        82.92        12.59        39.09        17.72       104.09 
TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 TCGA-77-8153 TCGA-77-8154 
       11.54        26.40        27.39         6.97        55.36        35.90 
TCGA-77-8156 TCGA-77-A5FZ TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6560 TCGA-85-6798 
        0.33       126.18        30.81        23.44         0.36         1.12 
TCGA-85-7697 TCGA-85-7699 TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 TCGA-85-8052 
        0.33         0.03         1.25         1.97         0.85         0.53 
TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8288 TCGA-85-8350 
       16.77        14.07        16.87         0.43         1.78         1.97 
TCGA-85-8351 TCGA-85-8354 TCGA-85-8355 TCGA-85-8479 TCGA-85-8481 TCGA-85-8582 
        1.81         2.01         2.01         0.72         0.69        13.94 
TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A50M TCGA-85-A513 
        0.10        15.62         0.49         0.82         0.62         0.79 
TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 TCGA-90-7964 TCGA-90-A4ED 
       24.92         9.50         2.93        11.77        14.07         8.02 
TCGA-92-7340 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 
        2.70         4.01         5.26         2.30         2.86         0.16 
TCGA-96-8169 TCGA-96-8170 TCGA-96-A4JL TCGA-98-7454 TCGA-98-8020 TCGA-98-8022 
        6.21         6.94         6.02         8.42         2.76         7.36 
TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-NC-A5HG TCGA-NC-A5HI 
        7.30         1.15        50.89        37.32 

  1P LOSS MUTATED 1P LOSS WILD-TYPE 
             0.03              0.03 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
           141.34            173.82 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
            14.10             12.51 
[1] "0.0 - 141.3 (14.1)" "0.0 - 173.8 (12.5)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "1P LOSS MUTATED"   "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
  "1P LOSS MUTATED"   "1P LOSS MUTATED"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "1P LOSS MUTATED"   "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
  "1P LOSS MUTATED"   "1P LOSS MUTATED"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "1P LOSS MUTATED"   "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
  "1P LOSS MUTATED"   "1P LOSS MUTATED"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D41V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  1P LOSS MUTATED         0       17       38        0        16        23
  1P LOSS WILD-TYPE       1       52       98        1        34        47
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  1P LOSS MUTATED           19          8        0
  1P LOSS WILD-TYPE         35         12        5
D41V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  1P LOSS MUTATED    26  72  17   6
  1P LOSS WILD-TYPE  69 178  28  13
D41V4, multiclass
    clus
vv   1P LOSS MUTATED 1P LOSS WILD-TYPE
  T1              26                69
  T2              72               178
  T3              17                28
  T4               6                13
                   vv
clus                 N0  N1  N2  N3
  1P LOSS MUTATED    64  43  10   2
  1P LOSS WILD-TYPE 191  66  24   3
D41V5, multiclass
    clus
vv   1P LOSS MUTATED 1P LOSS WILD-TYPE
  N0              64               191
  N1              43                66
  N2              10                24
  N3               2                 3
                   vv
clus                 M0  M1  MX
  1P LOSS MUTATED   105   0  13
  1P LOSS WILD-TYPE 244   5  36
D41V6, multiclass
    clus
vv   1P LOSS MUTATED 1P LOSS WILD-TYPE
  M0             105               244
  M1               0                 5
  MX              13                36
D41V7, binary
                   cls
clus                  0   1
  1P LOSS MUTATED    21 100
  1P LOSS WILD-TYPE  83 205
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P LOSS MUTATED     21  100
  1P LOSS WILD-TYPE   83  205
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  FEMALE              21                83
  MALE               100               205
D41V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  1P LOSS MUTATED                                       3
  1P LOSS WILD-TYPE                                     9
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  1P LOSS MUTATED                                        1
  1P LOSS WILD-TYPE                                      5
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  1P LOSS MUTATED                                         0
  1P LOSS WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  1P LOSS MUTATED                                                           117
  1P LOSS WILD-TYPE                                                         273
D41V9, multiclass
                                                             clus
vv                                                            1P LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     3
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             117
                                                             clus
vv                                                            1P LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       9
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               273
D41V10, binary
                   cls
clus                  0   1
  1P LOSS MUTATED     6 115
  1P LOSS WILD-TYPE   7 281
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P LOSS MUTATED      6  115
  1P LOSS WILD-TYPE    7  281
     clus
vv    1P LOSS MUTATED 1P LOSS WILD-TYPE
  NO                6                 7
  YES             115               281
D41V11, continuous
D41V12, continuous
                   vv
clus                 R0  R1  R2  RX
  1P LOSS MUTATED   103   1   2   4
  1P LOSS WILD-TYPE 229   7   2  14
D41V13, multiclass
    clus
vv   1P LOSS MUTATED 1P LOSS WILD-TYPE
  R0             103               229
  R1               1                 7
  R2               2                 2
  RX               4                14

Clustering(42) Variable = 1Q LOSS MUTATION ANALYSIS
D42V1, survival
                   sevent
clus2                 0   1
  1Q LOSS MUTATED    26  18
  1Q LOSS WILD-TYPE 218 121
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
               44               339 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
               18               121 
$`1Q LOSS MUTATED`
TCGA-21-5786 TCGA-22-4593 TCGA-22-4595 TCGA-22-4604 TCGA-22-5471 TCGA-22-5477 
       33.93        35.08        24.13        13.12        31.73        44.25 
TCGA-34-2605 TCGA-37-4129 TCGA-39-5029 TCGA-39-5034 TCGA-43-3394 TCGA-43-A474 
       28.96         6.58        24.33        36.39        27.02        11.61 
TCGA-43-A56V TCGA-46-3768 TCGA-46-6026 TCGA-51-4079 TCGA-52-7811 TCGA-56-5898 
       12.03         9.99        13.91         0.39         8.75        18.25 
TCGA-56-6545 TCGA-56-7580 TCGA-56-7730 TCGA-56-7822 TCGA-56-A49D TCGA-58-8392 
        2.04         1.32         0.20         0.03         1.25        16.47 
TCGA-60-2714 TCGA-60-2719 TCGA-66-2791 TCGA-66-2793 TCGA-68-7755 TCGA-68-7757 
       50.33        42.64         5.03        10.06         2.73         6.94 
TCGA-77-7139 TCGA-77-8128 TCGA-77-8133 TCGA-77-8150 TCGA-77-A5G3 TCGA-85-6175 
       89.98        37.81        53.92        54.41       117.57         9.67 
TCGA-85-7843 TCGA-85-8287 TCGA-85-A53L TCGA-96-7544 TCGA-96-7545 TCGA-96-A4JK 
        1.15         1.45         0.43        39.88        44.19         8.98 
TCGA-98-8021 TCGA-98-8023 
       13.58        10.13 

$`1Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.01        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.64 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.54         3.02        27.19 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 
      119.54        46.88        99.16        70.16        60.89        34.78 
TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 
       15.58        31.73       122.43         9.34       119.80         8.78 
TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-5787 TCGA-21-A5DI TCGA-22-0940 
       31.63        88.11        41.69        10.82        32.19        19.99 
TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 
        7.33        14.93         4.31        64.21         1.74        14.10 
TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4594 TCGA-22-4596 TCGA-22-4599 
       27.02        48.82        20.48        48.33         0.56        38.17 
TCGA-22-4601 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5472 
       34.75        32.02        19.30         9.57        11.77        64.93 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 
       63.55        14.63         0.79        54.28        71.34        79.20 
TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 
       11.74        18.84        30.12        62.86        56.32        16.64 
TCGA-22-A5C4 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 
        0.95         7.63       114.05        97.94        43.10       173.82 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 
      103.53       141.34        14.07        54.44        10.82        19.76 
TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2608 TCGA-34-2609 
       27.02         2.63        61.61        31.50        32.88        31.27 
TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 
       50.24        67.79        56.38         9.07        23.24        12.00 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 
       14.07        30.94        18.15         4.96         1.12         3.95 
TCGA-37-3789 TCGA-37-3792 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 
        0.43         0.39         8.12         7.46         7.82         6.81 
TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 
        0.39         3.39        47.80        74.07        44.75        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5030 TCGA-39-5031 
       55.20        70.03        60.79         1.71         1.94        27.39 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-39-5040 TCGA-43-2576 
       15.58        35.64        35.70        17.88        17.06        40.21 
TCGA-43-2578 TCGA-43-2581 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 
       22.49        38.66        33.11        11.47        18.05        12.36 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 
       24.89        10.19         5.46         3.81         6.97         7.76 
TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 TCGA-43-A475 TCGA-43-A56U 
       66.51        13.38        11.77         2.93         9.73        14.20 
TCGA-46-6025 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 
       10.65         0.39        29.95        17.79         5.46        30.35 
TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 
       27.45        28.96         0.10         0.62         0.99         0.43 
TCGA-56-7223 TCGA-56-7579 TCGA-56-7582 TCGA-56-8503 TCGA-56-8504 TCGA-56-8622 
        0.99         1.45         0.85         1.35         5.85         1.81 
TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 TCGA-56-A4BW 
        1.18         2.07         0.56         0.53         1.12         0.07 
TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DR TCGA-56-A5DS 
        1.51         0.99         0.82         0.13         0.13         0.26 
TCGA-58-8386 TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 TCGA-58-8393 
        0.03        13.25        12.43        29.95        71.24        34.78 
TCGA-58-A46J TCGA-58-A46K TCGA-58-A46L TCGA-58-A46M TCGA-58-A46N TCGA-60-2695 
       64.87        34.36        36.59        23.24        17.75        21.11 
TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 
        3.58        12.23        10.22        96.82        37.94        92.71 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.73        80.45        49.48        66.54        41.42         9.01 
TCGA-60-2713 TCGA-60-2715 TCGA-60-2716 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
       56.91        35.34        48.49         3.19        32.32        29.85 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 
       35.90        23.57        26.83        11.77        16.96        43.10 
TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 
        2.01        21.07         0.99         1.02         2.01         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        0.99         0.99        21.01        25.05         0.99         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 
        1.02         2.01         2.01         7.07        23.01        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
        3.02         2.01        19.00        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       24.95         1.97        25.97        40.01        22.98         4.04 
TCGA-66-2790 TCGA-66-2792 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7756 
       22.98        30.02        54.08         4.01        49.05         6.64 
TCGA-68-8250 TCGA-68-8251 TCGA-68-A59I TCGA-68-A59J TCGA-77-6842 TCGA-77-6843 
        8.02         3.16         3.98         3.42        29.56        73.12 
TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 
       75.09        23.28        11.18        20.78         0.49        42.28 
TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 
       70.13       106.95         0.16        46.78        15.75         6.51 
TCGA-77-8008 TCGA-77-8009 TCGA-77-8130 TCGA-77-8131 TCGA-77-8136 TCGA-77-8138 
       86.76        53.95        82.92        12.59        39.09        17.72 
TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 
      104.09        11.54        26.40        27.39         6.97         9.63 
TCGA-77-8153 TCGA-77-8154 TCGA-77-8156 TCGA-77-A5FZ TCGA-77-A5GB TCGA-77-A5GH 
       55.36        35.90         0.33       126.18        30.81        23.44 
TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 
        0.36        12.99         1.12         0.59         0.33         1.61 
TCGA-85-7699 TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 
        0.03         1.25         1.97         0.85         1.97         0.53 
TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 TCGA-85-8288 
       16.77        14.07        16.87         0.43         0.36         1.78 
TCGA-85-8350 TCGA-85-8351 TCGA-85-8352 TCGA-85-8353 TCGA-85-8354 TCGA-85-8355 
        1.97         1.81         2.20         1.78         2.01         2.01 
TCGA-85-8479 TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 TCGA-85-8666 
        0.72         0.69        14.63        13.94         0.10        15.62 
TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A50M TCGA-85-A513 TCGA-90-6837 TCGA-90-7766 
        0.49         0.82         0.62         0.79        24.92         9.50 
TCGA-90-7767 TCGA-90-7769 TCGA-90-7964 TCGA-90-A4ED TCGA-90-A4EE TCGA-92-7340 
        2.93        11.77        14.07         8.02        10.88         2.70 
TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 
        3.48         4.01         5.26         2.30         2.86         0.16 
TCGA-94-7943 TCGA-96-8169 TCGA-96-8170 TCGA-96-A4JL TCGA-98-7454 TCGA-98-8020 
       11.70         6.21         6.94         6.02         8.42         2.76 
TCGA-98-8022 TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-L3-A524 TCGA-LA-A446 TCGA-MF-A522 
        7.36         7.30         1.15        14.76         1.18         2.73 
TCGA-NC-A5HE TCGA-NC-A5HG TCGA-NC-A5HI 
       56.61        50.89        37.32 

  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
             0.03              0.03 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
           117.57            173.82 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
            13.35             13.38 
[1] "0.0 - 117.6 (13.3)" "0.0 - 173.8 (13.4)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED"   "1Q LOSS MUTATED" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
  "1Q LOSS MUTATED"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
  "1Q LOSS MUTATED"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
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  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED"   "1Q LOSS MUTATED" 
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"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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  "1Q LOSS MUTATED"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
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"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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  "1Q LOSS MUTATED"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
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  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED"   "1Q LOSS MUTATED" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
  "1Q LOSS MUTATED"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
  "1Q LOSS MUTATED"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D42V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  1Q LOSS MUTATED         0        6       10        0        11         9
  1Q LOSS WILD-TYPE       1       63      126        1        39        61
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  1Q LOSS MUTATED            9          3        0
  1Q LOSS WILD-TYPE         45         17        5
D42V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  1Q LOSS MUTATED    11  27   8   2
  1Q LOSS WILD-TYPE  84 223  37  17
D42V4, multiclass
    clus
vv   1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  T1              11                84
  T2              27               223
  T3               8                37
  T4               2                17
                   vv
clus                 N0  N1  N2  N3
  1Q LOSS MUTATED    24  18   5   1
  1Q LOSS WILD-TYPE 231  91  29   4
D42V5, multiclass
    clus
vv   1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  N0              24               231
  N1              18                91
  N2               5                29
  N3               1                 4
                   vv
clus                 M0  M1  MX
  1Q LOSS MUTATED    42   0   4
  1Q LOSS WILD-TYPE 307   5  45
D42V6, multiclass
    clus
vv   1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  M0              42               307
  M1               0                 5
  MX               4                45
D42V7, binary
                   cls
clus                  0   1
  1Q LOSS MUTATED    10  38
  1Q LOSS WILD-TYPE  94 267
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q LOSS MUTATED     10   38
  1Q LOSS WILD-TYPE   94  267
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  FEMALE              10                94
  MALE                38               267
D42V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  1Q LOSS MUTATED                                       0
  1Q LOSS WILD-TYPE                                    12
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  1Q LOSS MUTATED                                        1
  1Q LOSS WILD-TYPE                                      5
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  1Q LOSS MUTATED                                         0
  1Q LOSS WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  1Q LOSS MUTATED                                                            47
  1Q LOSS WILD-TYPE                                                         343
D42V9, multiclass
                                                             clus
vv                                                            1Q LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     0
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              47
                                                             clus
vv                                                            1Q LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      12
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               343
D42V10, binary
                   cls
clus                  0   1
  1Q LOSS MUTATED     4  44
  1Q LOSS WILD-TYPE   9 352
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q LOSS MUTATED      4   44
  1Q LOSS WILD-TYPE    9  352
     clus
vv    1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  NO                4                 9
  YES              44               352
D42V11, continuous
D42V12, continuous
                   vv
clus                 R0  R1  R2  RX
  1Q LOSS MUTATED    38   1   2   1
  1Q LOSS WILD-TYPE 294   7   2  17
D42V13, multiclass
    clus
vv   1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  R0              38               294
  R1               1                 7
  R2               2                 2
  RX               1                17

Clustering(43) Variable = 2P LOSS MUTATION ANALYSIS
D43V1, survival
                   sevent
clus2                 0   1
  2P LOSS MUTATED     9   6
  2P LOSS WILD-TYPE 235 133
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
               15               368 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
                6               133 
$`2P LOSS MUTATED`
TCGA-21-5787 TCGA-22-5481 TCGA-33-4533 TCGA-37-4141 TCGA-37-5819 TCGA-39-5028 
       10.82        79.20       114.05         0.39         3.39         1.71 
TCGA-39-5029 TCGA-43-2578 TCGA-51-4081 TCGA-56-1622 TCGA-66-2756 TCGA-66-2763 
       24.33        22.49        29.95        28.96         0.99         0.99 
TCGA-68-A59J TCGA-77-7465 TCGA-85-8352 
        3.42        15.75         2.20 

$`2P LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.01        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.64 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.54         3.02        27.19 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 
      119.54        46.88        99.16        70.16        60.89        34.78 
TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 
       15.58        31.73       122.43         9.34       119.80         8.78 
TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 TCGA-21-A5DI TCGA-22-0940 
       31.63        88.11        41.69        33.93        32.19        19.99 
TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 
        7.33        14.93         4.31        64.21         1.74        14.10 
TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 
       27.02        48.82        20.48        35.08        48.33        24.13 
TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 
        0.56        38.17        34.75        13.12        32.02        19.30 
TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
        9.57        11.77        31.73        64.93        63.55        14.63 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5482 TCGA-22-5483 
       44.25         0.79        54.28        71.34        11.74        18.84 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-22-A5C4 TCGA-33-4532 
       30.12        62.86        56.32        16.64         0.95         7.63 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 
       97.94        43.10       173.82       103.53       141.34        14.07 
TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 
       54.44        10.82        19.76        27.02         2.63        61.61 
TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 
       31.50        28.96        32.88        31.27        50.24        67.79 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 
       56.38         9.07        23.24        12.00        14.07        30.94 
TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 
       18.15         4.96         1.12         3.95         0.43         0.39 
TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-39-5011 
        6.58         8.12         7.46         7.82         6.81        47.80 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.75        68.58        55.20        70.03        60.79 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
        1.94        27.39        36.39        15.58        35.64        35.70 
TCGA-39-5039 TCGA-39-5040 TCGA-43-2576 TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 
       17.88        17.06        40.21        38.66        27.02        33.11 
TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 
       11.47        18.05        12.36        24.89        10.19         5.46 
TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 
        3.81         6.97         7.76        66.51        13.38        11.77 
TCGA-43-8118 TCGA-43-A474 TCGA-43-A475 TCGA-43-A56U TCGA-43-A56V TCGA-46-3768 
        2.93        11.61         9.73        14.20        12.03         9.99 
TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-52-7622 TCGA-52-7809 
       10.65        13.91         0.39         0.39        17.79         5.46 
TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 TCGA-56-5897 TCGA-56-5898 TCGA-56-6545 
       30.35         8.75        27.45         0.10        18.25         2.04 
TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 
        0.62         0.99         0.43         0.99         1.45         1.32 
TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 TCGA-56-8503 TCGA-56-8504 TCGA-56-8622 
        0.85         0.20         0.03         1.35         5.85         1.81 
TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 TCGA-56-A49D 
        1.18         2.07         0.56         0.53         1.12         1.25 
TCGA-56-A4BW TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DR 
        0.07         1.51         0.99         0.82         0.13         0.13 
TCGA-56-A5DS TCGA-58-8386 TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 
        0.26         0.03        13.25        12.43        29.95        71.24 
TCGA-58-8392 TCGA-58-8393 TCGA-58-A46J TCGA-58-A46K TCGA-58-A46L TCGA-58-A46M 
       16.47        34.78        64.87        34.36        36.59        23.24 
TCGA-58-A46N TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 
       17.75        21.11         3.58        12.23        10.22        96.82 
TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
       37.94        92.71        21.73        80.45        49.48        66.54 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 
       41.42         9.01        56.91        50.33        35.34        48.49 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 
       42.64         3.19        32.32        29.85        35.90        23.57 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 
       26.83        11.77        16.96        43.10         2.01        21.07 
TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2757 TCGA-66-2758 
        0.99         1.02         2.01         0.92         0.99        21.01 
TCGA-66-2759 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 
       25.05         2.01         1.02         2.01         2.01         7.07 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
       23.01        19.00         3.02         2.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 
        3.98        12.00        24.95         1.97        25.97        40.01 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 
       22.98         4.04        22.98         5.03        30.02        10.06 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 
       54.08         4.01        49.05         2.73         6.64         6.94 
TCGA-68-8250 TCGA-68-8251 TCGA-68-A59I TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 
        8.02         3.16         3.98        29.56        73.12        75.09 
TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 
       23.28        11.18        89.98        20.78         0.49        42.28 
TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-8007 TCGA-77-8008 
       70.13       106.95         0.16        46.78         6.51        86.76 
TCGA-77-8009 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 
       53.95        37.81        82.92        12.59        53.92        39.09 
TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 
       17.72       104.09        11.54        26.40        27.39         6.97 
TCGA-77-8148 TCGA-77-8150 TCGA-77-8153 TCGA-77-8154 TCGA-77-8156 TCGA-77-A5FZ 
        9.63        54.41        55.36        35.90         0.33       126.18 
TCGA-77-A5G3 TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6175 TCGA-85-6560 TCGA-85-6561 
      117.57        30.81        23.44         9.67         0.36        12.99 
TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 
        1.12         0.59         0.33         1.61         0.03         1.15 
TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 
        1.25         1.97         0.85         1.97         0.53        16.77 
TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 TCGA-85-8288 
       14.07        16.87         0.43         0.36         1.45         1.78 
TCGA-85-8350 TCGA-85-8351 TCGA-85-8353 TCGA-85-8354 TCGA-85-8355 TCGA-85-8479 
        1.97         1.81         1.78         2.01         2.01         0.72 
TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL 
        0.69        14.63        13.94         0.10        15.62         0.49 
TCGA-85-A4QR TCGA-85-A50M TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 TCGA-90-7766 
        0.82         0.62         0.79         0.43        24.92         9.50 
TCGA-90-7767 TCGA-90-7769 TCGA-90-7964 TCGA-90-A4ED TCGA-90-A4EE TCGA-92-7340 
        2.93        11.77        14.07         8.02        10.88         2.70 
TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 
        3.48         4.01         5.26         2.30         2.86         0.16 
TCGA-94-7943 TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 TCGA-96-A4JK 
       11.70        39.88        44.19         6.21         6.94         8.98 
TCGA-96-A4JL TCGA-98-7454 TCGA-98-8020 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
        6.02         8.42         2.76        13.58         7.36        10.13 
TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-L3-A524 TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE 
        7.30         1.15        14.76         1.18         2.73        56.61 
TCGA-NC-A5HG TCGA-NC-A5HI 
       50.89        37.32 

  2P LOSS MUTATED 2P LOSS WILD-TYPE 
             0.39              0.03 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
           114.05            173.82 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
            10.82             13.48 
[1] "0.4 - 114.0 (10.8)" "0.0 - 173.8 (13.5)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED"   "2P LOSS MUTATED" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED"   "2P LOSS MUTATED" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED"   "2P LOSS MUTATED" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D43V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  2P LOSS MUTATED         0        2        4        0         1         3
  2P LOSS WILD-TYPE       1       67      132        1        49        67
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  2P LOSS MUTATED            5          1        0
  2P LOSS WILD-TYPE         49         19        5
D43V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  2P LOSS MUTATED     3  10   1   2
  2P LOSS WILD-TYPE  92 240  44  17
D43V4, multiclass
    clus
vv   2P LOSS MUTATED 2P LOSS WILD-TYPE
  T1               3                92
  T2              10               240
  T3               1                44
  T4               2                17
                   vv
clus                 N0  N1  N2  N3
  2P LOSS MUTATED     7   6   3   0
  2P LOSS WILD-TYPE 248 103  31   5
D43V5, multiclass
    clus
vv   2P LOSS MUTATED 2P LOSS WILD-TYPE
  N0               7               248
  N1               6               103
  N2               3                31
  N3               0                 5
                   vv
clus                 M0  M1  MX
  2P LOSS MUTATED    15   0   1
  2P LOSS WILD-TYPE 334   5  48
D43V6, multiclass
    clus
vv   2P LOSS MUTATED 2P LOSS WILD-TYPE
  M0              15               334
  M1               0                 5
  MX               1                48
D43V7, binary
                   cls
clus                  0   1
  2P LOSS MUTATED     6  10
  2P LOSS WILD-TYPE  98 295
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P LOSS MUTATED      6   10
  2P LOSS WILD-TYPE   98  295
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  FEMALE               6                98
  MALE                10               295
D43V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  2P LOSS MUTATED                                       0
  2P LOSS WILD-TYPE                                    12
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  2P LOSS MUTATED                                        0
  2P LOSS WILD-TYPE                                      6
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  2P LOSS MUTATED                                         0
  2P LOSS WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  2P LOSS MUTATED                                                            16
  2P LOSS WILD-TYPE                                                         374
D43V9, multiclass
                                                             clus
vv                                                            2P LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     0
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    0
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              16
                                                             clus
vv                                                            2P LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      12
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      6
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               374
D43V10, binary
                   cls
clus                  0   1
  2P LOSS MUTATED     1  15
  2P LOSS WILD-TYPE  12 381
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P LOSS MUTATED      1   15
  2P LOSS WILD-TYPE   12  381
     clus
vv    2P LOSS MUTATED 2P LOSS WILD-TYPE
  NO                1                12
  YES              15               381
D43V11, continuous
D43V12, continuous
                   vv
clus                 R0  R1  R2  RX
  2P LOSS MUTATED    16   0   0   0
  2P LOSS WILD-TYPE 316   8   4  18
D43V13, multiclass
    clus
vv   2P LOSS MUTATED 2P LOSS WILD-TYPE
  R0              16               316
  R1               0                 8
  R2               0                 4
  RX               0                18

Clustering(44) Variable = 2Q LOSS MUTATION ANALYSIS
D44V1, survival
                   sevent
clus2                 0   1
  2Q LOSS MUTATED    20  10
  2Q LOSS WILD-TYPE 224 129
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
               30               353 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
               10               129 
$`2Q LOSS MUTATED`
TCGA-18-3417 TCGA-21-1082 TCGA-21-5786 TCGA-21-5787 TCGA-22-4604 TCGA-22-5481 
       24.92       119.80        33.93        10.82        13.12        79.20 
TCGA-33-4533 TCGA-37-4141 TCGA-39-5028 TCGA-43-2578 TCGA-43-7657 TCGA-43-8115 
      114.05         0.39         1.71        22.49         7.76        13.38 
TCGA-51-4081 TCGA-56-1622 TCGA-58-8392 TCGA-58-A46K TCGA-60-2713 TCGA-60-2724 
       29.95        28.96        16.47        34.36        56.91        23.57 
TCGA-66-2763 TCGA-66-2767 TCGA-66-2800 TCGA-68-A59J TCGA-77-7465 TCGA-77-8007 
        0.99         2.01        49.05         3.42        15.75         6.51 
TCGA-77-8136 TCGA-85-7696 TCGA-85-7699 TCGA-85-8288 TCGA-85-8352 TCGA-85-8664 
       39.09         0.59         0.03         1.78         2.20         0.10 

$`2Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.01        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3419 TCGA-18-3421 
       11.34        13.02        59.51        28.34         1.64        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.54         3.02        27.19       119.54 
TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 
       46.88        99.16        70.16        60.89        34.78        15.58 
TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 
       31.73       122.43         9.34         8.78        31.63        88.11 
TCGA-21-5784 TCGA-21-A5DI TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 
       41.69        32.19        19.99         7.33        14.93         4.31 
TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 
       64.21         1.74        14.10        27.02        48.82        20.48 
TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 
       35.08        48.33        24.13         0.56        38.17        34.75 
TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       32.02        19.30         9.57        11.77        31.73        64.93 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 
       63.55        14.63        44.25         0.79        54.28        71.34 
TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 
       11.74        18.84        30.12        62.86        56.32        16.64 
TCGA-22-A5C4 TCGA-33-4532 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 
        0.95         7.63        97.94        43.10       173.82       103.53 
TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 
      141.34        14.07        54.44        10.82        19.76        27.02 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 
        2.63        61.61        31.50        28.96        32.88        31.27 
TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 
       50.24        67.79        56.38         9.07        23.24        12.00 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 
       14.07        30.94        18.15         4.96         1.12         3.95 
TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 
        0.43         0.39         6.58         8.12         7.46         7.82 
TCGA-37-4135 TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 
        6.81         3.39        47.80        74.07        44.75        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 
       55.20        70.03        60.79        24.33         1.94        27.39 
TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-39-5040 
       36.39        15.58        35.64        35.70        17.88        17.06 
TCGA-43-2576 TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 
       40.21        38.66        27.02        33.11        11.47        18.05 
TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 
       12.36        24.89        10.19         5.46         3.81         6.97 
TCGA-43-7658 TCGA-43-8116 TCGA-43-8118 TCGA-43-A474 TCGA-43-A475 TCGA-43-A56U 
       66.51        11.77         2.93        11.61         9.73        14.20 
TCGA-43-A56V TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
       12.03         9.99        10.65        13.91         0.39         0.39 
TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 TCGA-56-5897 
       17.79         5.46        30.35         8.75        27.45         0.10 
TCGA-56-5898 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 
       18.25         2.04         0.62         0.99         0.43         0.99 
TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 TCGA-56-8503 
        1.45         1.32         0.85         0.20         0.03         1.35 
TCGA-56-8504 TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 
        5.85         1.81         1.18         2.07         0.56         0.53 
TCGA-56-8629 TCGA-56-A49D TCGA-56-A4BW TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A4ZJ 
        1.12         1.25         0.07         1.51         0.99         0.82 
TCGA-56-A4ZK TCGA-56-A5DR TCGA-56-A5DS TCGA-58-8386 TCGA-58-8387 TCGA-58-8388 
        0.13         0.13         0.26         0.03        13.25        12.43 
TCGA-58-8390 TCGA-58-8391 TCGA-58-8393 TCGA-58-A46J TCGA-58-A46L TCGA-58-A46M 
       29.95        71.24        34.78        64.87        36.59        23.24 
TCGA-58-A46N TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 
       17.75        21.11         3.58        12.23        10.22        96.82 
TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
       37.94        92.71        21.73        80.45        49.48        66.54 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 
       41.42         9.01        50.33        35.34        48.49        42.64 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2725 TCGA-60-2726 
        3.19        32.32        29.85        35.90        26.83        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 
       16.96        43.10         2.01        21.07         0.99         1.02 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 
        2.01         0.92         0.99         0.99        21.01        25.05 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 
        2.01         1.02         2.01         7.07        23.01        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
        3.02         2.01        19.00        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       24.95         1.97        25.97        40.01        22.98         4.04 
TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
       22.98         5.03        30.02        10.06        54.08         4.01 
TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 TCGA-68-A59I 
        2.73         6.64         6.94         8.02         3.16         3.98 
TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 
       29.56        73.12        75.09        23.28        11.18        89.98 
TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 
       20.78         0.49        42.28        70.13       106.95         0.16 
TCGA-77-7463 TCGA-77-8008 TCGA-77-8009 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 
       46.78        86.76        53.95        37.81        82.92        12.59 
TCGA-77-8133 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 
       53.92        17.72       104.09        11.54        26.40        27.39 
TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-77-8153 TCGA-77-8154 TCGA-77-8156 
        6.97         9.63        54.41        55.36        35.90         0.33 
TCGA-77-A5FZ TCGA-77-A5G3 TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6175 TCGA-85-6560 
      126.18       117.57        30.81        23.44         9.67         0.36 
TCGA-85-6561 TCGA-85-6798 TCGA-85-7697 TCGA-85-7698 TCGA-85-7843 TCGA-85-7844 
       12.99         1.12         0.33         1.61         1.15         1.25 
TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 
        1.97         0.85         1.97         0.53        16.77        14.07 
TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 TCGA-85-8350 TCGA-85-8351 
       16.87         0.43         0.36         1.45         1.97         1.81 
TCGA-85-8353 TCGA-85-8354 TCGA-85-8355 TCGA-85-8479 TCGA-85-8481 TCGA-85-8580 
        1.78         2.01         2.01         0.72         0.69        14.63 
TCGA-85-8582 TCGA-85-8666 TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A50M TCGA-85-A513 
       13.94        15.62         0.49         0.82         0.62         0.79 
TCGA-85-A53L TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 TCGA-90-7964 
        0.43        24.92         9.50         2.93        11.77        14.07 
TCGA-90-A4ED TCGA-90-A4EE TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 
        8.02        10.88         2.70         3.48         4.01         5.26 
TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 TCGA-96-7545 
        2.30         2.86         0.16        11.70        39.88        44.19 
TCGA-96-8169 TCGA-96-8170 TCGA-96-A4JK TCGA-96-A4JL TCGA-98-7454 TCGA-98-8020 
        6.21         6.94         8.98         6.02         8.42         2.76 
TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-L3-A524 
       13.58         7.36        10.13         7.30         1.15        14.76 
TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HG TCGA-NC-A5HI 
        1.18         2.73        56.61        50.89        37.32 

  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
             0.03              0.03 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
           119.80            173.82 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
           14.565            13.250 
[1] "0.0 - 119.8 (14.6)" "0.0 - 173.8 (13.2)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D44V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  2Q LOSS MUTATED         0        3        9        0         4         6
  2Q LOSS WILD-TYPE       1       66      127        1        46        64
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  2Q LOSS MUTATED            6          2        1
  2Q LOSS WILD-TYPE         48         18        4
D44V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  2Q LOSS MUTATED     5  21   2   3
  2Q LOSS WILD-TYPE  90 229  43  16
D44V4, multiclass
    clus
vv   2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  T1               5                90
  T2              21               229
  T3               2                43
  T4               3                16
                   vv
clus                 N0  N1  N2  N3
  2Q LOSS MUTATED    14  14   2   1
  2Q LOSS WILD-TYPE 241  95  32   4
D44V5, multiclass
    clus
vv   2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  N0              14               241
  N1              14                95
  N2               2                32
  N3               1                 4
                   vv
clus                 M0  M1  MX
  2Q LOSS MUTATED    27   1   3
  2Q LOSS WILD-TYPE 322   4  46
D44V6, multiclass
    clus
vv   2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  M0              27               322
  M1               1                 4
  MX               3                46
D44V7, binary
                   cls
clus                  0   1
  2Q LOSS MUTATED     9  22
  2Q LOSS WILD-TYPE  95 283
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q LOSS MUTATED      9   22
  2Q LOSS WILD-TYPE   95  283
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  FEMALE               9                95
  MALE                22               283
D44V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  2Q LOSS MUTATED                                       1
  2Q LOSS WILD-TYPE                                    11
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  2Q LOSS MUTATED                                        0
  2Q LOSS WILD-TYPE                                      6
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  2Q LOSS MUTATED                                         0
  2Q LOSS WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  2Q LOSS MUTATED                                                            30
  2Q LOSS WILD-TYPE                                                         360
D44V9, multiclass
                                                             clus
vv                                                            2Q LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     1
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    0
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              30
                                                             clus
vv                                                            2Q LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      11
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      6
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               360
D44V10, binary
                   cls
clus                  0   1
  2Q LOSS MUTATED     1  30
  2Q LOSS WILD-TYPE  12 366
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q LOSS MUTATED      1   30
  2Q LOSS WILD-TYPE   12  366
     clus
vv    2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  NO                1                12
  YES              30               366
D44V11, continuous
D44V12, continuous
                   vv
clus                 R0  R1  R2  RX
  2Q LOSS MUTATED    30   0   0   0
  2Q LOSS WILD-TYPE 302   8   4  18
D44V13, multiclass
    clus
vv   2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  R0              30               302
  R1               0                 8
  R2               0                 4
  RX               0                18

Clustering(45) Variable = 3P LOSS MUTATION ANALYSIS
D45V1, survival
                   sevent
clus2                 0   1
  3P LOSS MUTATED   158  79
  3P LOSS WILD-TYPE  86  60
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
              237               146 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
               79                60 
$`3P LOSS MUTATED`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.01        79.46        46.52        11.34 
TCGA-18-3416 TCGA-18-3417 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 
       28.34        24.92         6.15         2.79        90.54         3.02 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1075 TCGA-21-1077 TCGA-21-1079 TCGA-21-1082 
      119.54        46.88        70.16        34.78        31.73       119.80 
TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 TCGA-21-5786 TCGA-21-5787 TCGA-21-A5DI 
        8.78        31.63        88.11        33.93        10.82        32.19 
TCGA-22-0940 TCGA-22-0944 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4594 
       19.99         7.33        14.10        27.02        20.48        48.33 
TCGA-22-4599 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 
       38.17        13.12        32.02        19.30         9.57        11.77 
TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5478 TCGA-22-5479 
       31.73        64.93        63.55        14.63         0.79        54.28 
TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-22-5492 TCGA-22-A5C4 
       71.34        79.20        11.74        18.84        16.64         0.95 
TCGA-33-4532 TCGA-33-4583 TCGA-33-4587 TCGA-33-4589 TCGA-33-6738 TCGA-34-2596 
        7.63       141.34        54.44        10.82        27.02         2.63 
TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-5231 TCGA-34-5239 
       61.61        31.50        28.96        32.88        50.24        23.24 
TCGA-34-5927 TCGA-34-5929 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 
       30.94         4.96         6.58         8.12         7.46         7.82 
TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5024 TCGA-39-5027 
        0.39         3.39        47.80        74.07        70.03        60.79 
TCGA-39-5028 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-43-2576 TCGA-43-2581 
        1.71        27.39        15.58        35.64        40.21        38.66 
TCGA-43-3920 TCGA-43-6143 TCGA-43-6770 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 
       33.11        12.36        10.19         6.97         7.76        66.51 
TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 TCGA-43-A474 TCGA-51-4079 TCGA-51-4080 
       13.38        11.77         2.93        11.61         0.39         0.39 
TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 
       29.95        17.79         5.46         8.75        27.45        28.96 
TCGA-56-5897 TCGA-56-6545 TCGA-56-7221 TCGA-56-7222 TCGA-56-7579 TCGA-56-7580 
        0.10         2.04         0.99         0.43         1.45         1.32 
TCGA-56-7582 TCGA-56-7822 TCGA-56-8503 TCGA-56-8504 TCGA-56-8624 TCGA-56-8626 
        0.85         0.03         1.35         5.85         1.18         0.56 
TCGA-56-8628 TCGA-56-8629 TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A5DS 
        0.53         1.12         1.51         0.99         0.82         0.26 
TCGA-58-8386 TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 TCGA-60-2695 TCGA-60-2696 
        0.03        12.43        29.95        71.24        21.11         3.58 
TCGA-60-2698 TCGA-60-2704 TCGA-60-2707 TCGA-60-2708 TCGA-60-2710 TCGA-60-2711 
       10.22        37.94        21.73        80.45        66.54        41.42 
TCGA-60-2712 TCGA-60-2719 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 
        9.01        42.64        32.32        29.85        35.90        23.57 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2734 TCGA-66-2742 TCGA-66-2754 TCGA-66-2755 
       26.83        11.77        43.10        21.07         2.01         0.92 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2763 TCGA-66-2765 TCGA-66-2767 TCGA-66-2768 
        0.99        21.01         0.99         2.01         2.01         2.01 
TCGA-66-2769 TCGA-66-2770 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
        7.07        23.01        19.00        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2790 TCGA-66-2791 
       24.95        25.97        40.01        22.98        22.98         5.03 
TCGA-66-2792 TCGA-66-2793 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 
       30.02        10.06         4.01        49.05         2.73         6.64 
TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 TCGA-68-A59I TCGA-77-6842 TCGA-77-6843 
        6.94         8.02         3.16         3.98        29.56        73.12 
TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7141 TCGA-77-7142 
       75.09        23.28        11.18        89.98         0.49        42.28 
TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8128 
       70.13       106.95         0.16        46.78        15.75        37.81 
TCGA-77-8130 TCGA-77-8133 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 
       82.92        53.92        17.72       104.09        11.54        26.40 
TCGA-77-8144 TCGA-77-8148 TCGA-77-8153 TCGA-77-8154 TCGA-77-8156 TCGA-77-A5G3 
       27.39         9.63        55.36        35.90         0.33       117.57 
TCGA-77-A5GH TCGA-85-6175 TCGA-85-6560 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 
       23.44         9.67         0.36         0.33         1.61         0.03 
TCGA-85-7844 TCGA-85-7950 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 
        1.25         1.97         0.53        16.77        14.07        16.87 
TCGA-85-8277 TCGA-85-8288 TCGA-85-8351 TCGA-85-8353 TCGA-85-8355 TCGA-85-8479 
        0.36         1.78         1.81         1.78         2.01         0.72 
TCGA-85-8481 TCGA-85-8666 TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A53L TCGA-90-7766 
        0.69        15.62         0.49         0.82         0.43         9.50 
TCGA-90-7767 TCGA-90-7964 TCGA-90-A4ED TCGA-90-A4EE TCGA-92-7341 TCGA-92-8063 
        2.93        14.07         8.02        10.88         3.48         4.01 
TCGA-92-8064 TCGA-92-8065 TCGA-94-7557 TCGA-96-7544 TCGA-96-8169 TCGA-96-8170 
        5.26         2.30         0.16        39.88         6.21         6.94 
TCGA-96-A4JK TCGA-98-8021 TCGA-98-8023 TCGA-L3-A4E7 TCGA-LA-A446 TCGA-MF-A522 
        8.98        13.58        10.13         1.15         1.18         2.73 
TCGA-NC-A5HE TCGA-NC-A5HG TCGA-NC-A5HI 
       56.61        50.89        37.32 

$`3P LOSS WILD-TYPE`
TCGA-18-3410 TCGA-18-3414 TCGA-18-3415 TCGA-18-3419 TCGA-18-3421 TCGA-18-5595 
        4.80        13.02        59.51         1.64        43.76        27.19 
TCGA-21-1072 TCGA-21-1076 TCGA-21-1078 TCGA-21-1080 TCGA-21-1081 TCGA-21-5784 
       99.16        60.89        15.58       122.43         9.34        41.69 
TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1017 TCGA-22-4593 
       14.93         4.31        64.21         1.74        48.82        35.08 
TCGA-22-4595 TCGA-22-4596 TCGA-22-4601 TCGA-22-5477 TCGA-22-5485 TCGA-22-5489 
       24.13         0.56        34.75        44.25        30.12        62.86 
TCGA-22-5491 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 
       56.32       114.05        97.94        43.10       173.82       103.53 
TCGA-33-4586 TCGA-33-6737 TCGA-34-2609 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       14.07        19.76        31.27        67.79        56.38         9.07 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5928 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 
       12.00        14.07        18.15         1.12         3.95         0.43 
TCGA-37-3792 TCGA-37-4135 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5029 
        0.39         6.81        44.75        68.58        55.20        24.33 
TCGA-39-5030 TCGA-39-5034 TCGA-39-5037 TCGA-39-5039 TCGA-39-5040 TCGA-43-2578 
        1.94        36.39        35.70        17.88        17.06        22.49 
TCGA-43-3394 TCGA-43-5668 TCGA-43-5670 TCGA-43-6647 TCGA-43-6771 TCGA-43-6773 
       27.02        11.47        18.05        24.89         5.46         3.81 
TCGA-43-A475 TCGA-43-A56U TCGA-43-A56V TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        9.73        14.20        12.03         9.99        10.65        13.91 
TCGA-52-7810 TCGA-56-5898 TCGA-56-6546 TCGA-56-7223 TCGA-56-7730 TCGA-56-8622 
       30.35        18.25         0.62         0.99         0.20         1.81 
TCGA-56-8625 TCGA-56-A49D TCGA-56-A4BW TCGA-56-A4ZK TCGA-56-A5DR TCGA-58-8387 
        2.07         1.25         0.07         0.13         0.13        13.25 
TCGA-58-8392 TCGA-58-8393 TCGA-58-A46J TCGA-58-A46K TCGA-58-A46L TCGA-58-A46M 
       16.47        34.78        64.87        34.36        36.59        23.24 
TCGA-58-A46N TCGA-60-2697 TCGA-60-2703 TCGA-60-2706 TCGA-60-2709 TCGA-60-2713 
       17.75        12.23        96.82        92.71        49.48        56.91 
TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2720 TCGA-66-2727 TCGA-66-2737 
       50.33        35.34        48.49         3.19        16.96         2.01 
TCGA-66-2744 TCGA-66-2753 TCGA-66-2756 TCGA-66-2759 TCGA-66-2766 TCGA-66-2771 
        0.99         1.02         0.99        25.05         1.02        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2785 TCGA-66-2789 TCGA-66-2794 TCGA-68-A59J 
        3.02         2.01         1.97         4.04        54.08         3.42 
TCGA-77-7140 TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 TCGA-77-8131 TCGA-77-8136 
       20.78         6.51        86.76        53.95        12.59        39.09 
TCGA-77-8145 TCGA-77-8150 TCGA-77-A5FZ TCGA-77-A5GB TCGA-85-6561 TCGA-85-6798 
        6.97        54.41       126.18        30.81        12.99         1.12 
TCGA-85-7696 TCGA-85-7843 TCGA-85-8048 TCGA-85-8049 TCGA-85-8276 TCGA-85-8287 
        0.59         1.15         0.85         1.97         0.43         1.45 
TCGA-85-8350 TCGA-85-8352 TCGA-85-8354 TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 
        1.97         2.20         2.01        14.63        13.94         0.10 
TCGA-85-A50M TCGA-85-A513 TCGA-90-6837 TCGA-90-7769 TCGA-92-7340 TCGA-94-7033 
        0.62         0.79        24.92        11.77         2.70         2.86 
TCGA-94-7943 TCGA-96-7545 TCGA-96-A4JL TCGA-98-7454 TCGA-98-8020 TCGA-98-8022 
       11.70        44.19         6.02         8.42         2.76         7.36 
TCGA-J1-A4AH TCGA-L3-A524 
        7.30        14.76 

  3P LOSS MUTATED 3P LOSS WILD-TYPE 
             0.03              0.07 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
           141.34            173.82 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
            12.36             14.07 
[1] "0.0 - 141.3 (12.4)" "0.1 - 173.8 (14.1)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
[1] "hr=" "1.1"
D45V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  3P LOSS MUTATED         1       42       89        0        30        40
  3P LOSS WILD-TYPE       0       27       47        1        20        30
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  3P LOSS MUTATED           31         13        4
  3P LOSS WILD-TYPE         23          7        1
D45V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  3P LOSS MUTATED    60 152  29  12
  3P LOSS WILD-TYPE  35  98  16   7
D45V4, multiclass
    clus
vv   3P LOSS MUTATED 3P LOSS WILD-TYPE
  T1              60                35
  T2             152                98
  T3              29                16
  T4              12                 7
                   vv
clus                 N0  N1  N2  N3
  3P LOSS MUTATED   163  68  17   4
  3P LOSS WILD-TYPE  92  41  17   1
D45V5, multiclass
    clus
vv   3P LOSS MUTATED 3P LOSS WILD-TYPE
  N0             163                92
  N1              68                41
  N2              17                17
  N3               4                 1
                   vv
clus                 M0  M1  MX
  3P LOSS MUTATED   214   4  31
  3P LOSS WILD-TYPE 135   1  18
D45V6, multiclass
    clus
vv   3P LOSS MUTATED 3P LOSS WILD-TYPE
  M0             214               135
  M1               4                 1
  MX              31                18
D45V7, binary
                   cls
clus                  0   1
  3P LOSS MUTATED    69 184
  3P LOSS WILD-TYPE  35 121
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P LOSS MUTATED     69  184
  3P LOSS WILD-TYPE   35  121
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  FEMALE              69                35
  MALE               184               121
D45V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  3P LOSS MUTATED                                       8
  3P LOSS WILD-TYPE                                     4
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  3P LOSS MUTATED                                        3
  3P LOSS WILD-TYPE                                      3
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  3P LOSS MUTATED                                         1
  3P LOSS WILD-TYPE                                       0
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  3P LOSS MUTATED                                                           241
  3P LOSS WILD-TYPE                                                         149
D45V9, multiclass
                                                             clus
vv                                                            3P LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     8
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    3
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             241
                                                             clus
vv                                                            3P LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       4
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      3
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               149
D45V10, binary
                   cls
clus                  0   1
  3P LOSS MUTATED     9 244
  3P LOSS WILD-TYPE   4 152
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P LOSS MUTATED      9  244
  3P LOSS WILD-TYPE    4  152
     clus
vv    3P LOSS MUTATED 3P LOSS WILD-TYPE
  NO                9                 4
  YES             244               152
D45V11, continuous
D45V12, continuous
                   vv
clus                 R0  R1  R2  RX
  3P LOSS MUTATED   206   3   3  11
  3P LOSS WILD-TYPE 126   5   1   7
D45V13, multiclass
    clus
vv   3P LOSS MUTATED 3P LOSS WILD-TYPE
  R0             206               126
  R1               3                 5
  R2               3                 1
  RX              11                 7

Clustering(46) Variable = 3Q LOSS MUTATION ANALYSIS
D46V1, survival
                   sevent
clus2                 0   1
  3Q LOSS MUTATED    34  22
  3Q LOSS WILD-TYPE 210 117
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               56               327 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               22               117 
$`3Q LOSS MUTATED`
TCGA-18-3408 TCGA-18-3412 TCGA-18-3416 TCGA-18-5592 TCGA-21-1075 TCGA-21-1079 
       81.01        11.34        28.34         3.02        70.16        31.73 
TCGA-21-1082 TCGA-22-0944 TCGA-22-1016 TCGA-22-4594 TCGA-22-4604 TCGA-22-5483 
      119.80         7.33        27.02        48.33        13.12        18.84 
TCGA-22-5492 TCGA-33-4583 TCGA-33-6738 TCGA-34-5929 TCGA-37-4129 TCGA-39-5011 
       16.64       141.34        27.02         4.96         6.58        47.80 
TCGA-39-5027 TCGA-43-2581 TCGA-43-A474 TCGA-52-7811 TCGA-56-1622 TCGA-56-7221 
       60.79        38.66        11.61         8.75        28.96         0.99 
TCGA-56-7579 TCGA-56-7582 TCGA-56-8503 TCGA-58-8388 TCGA-60-2696 TCGA-60-2698 
        1.45         0.85         1.35        12.43         3.58        10.22 
TCGA-60-2722 TCGA-66-2754 TCGA-66-2757 TCGA-66-2769 TCGA-66-2782 TCGA-66-2788 
       29.85         2.01         0.99         7.07        12.00        22.98 
TCGA-66-2791 TCGA-66-2793 TCGA-66-2795 TCGA-77-6843 TCGA-77-6844 TCGA-77-8130 
        5.03        10.06         4.01        73.12        75.09        82.92 
TCGA-77-8154 TCGA-85-6175 TCGA-85-7698 TCGA-85-8070 TCGA-85-8071 TCGA-85-8355 
       35.90         9.67         1.61        16.77        14.07         2.01 
TCGA-85-8481 TCGA-85-A53L TCGA-90-A4ED TCGA-92-7341 TCGA-94-7557 TCGA-96-8169 
        0.69         0.43         8.02         3.48         0.16         6.21 
TCGA-98-8023 TCGA-NC-A5HE 
       10.13        56.61 

$`3Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 TCGA-18-3414 
       12.16         4.47        79.46         4.80        46.52        13.02 
TCGA-18-3415 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 
       59.51        24.92         1.64        43.76         6.15         2.79 
TCGA-18-4721 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 TCGA-21-1076 
       90.54        27.19       119.54        46.88        99.16        60.89 
TCGA-21-1077 TCGA-21-1078 TCGA-21-1080 TCGA-21-1081 TCGA-21-1083 TCGA-21-5782 
       34.78        15.58       122.43         9.34         8.78        31.63 
TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-21-A5DI TCGA-22-0940 
       88.11        41.69        33.93        10.82        32.19        19.99 
TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1017 
       14.93         4.31        64.21         1.74        14.10        48.82 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 
       20.48        35.08        24.13         0.56        38.17        34.75 
TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       32.02        19.30         9.57        11.77        31.73        64.93 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 
       63.55        14.63        44.25         0.79        54.28        71.34 
TCGA-22-5481 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-A5C4 
       79.20        11.74        30.12        62.86        56.32         0.95 
TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 
        7.63       114.05        97.94        43.10       173.82       103.53 
TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 
       14.07        54.44        10.82        19.76         2.63        61.61 
TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 
       31.50        28.96        32.88        31.27        50.24        67.79 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 
       56.38         9.07        23.24        12.00        14.07        30.94 
TCGA-34-5928 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4130 
       18.15         1.12         3.95         0.43         0.39         8.12 
TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 
        7.46         7.82         6.81         0.39         3.39        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 TCGA-39-5029 
       44.75        68.58        55.20        70.03         1.71        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
        1.94        27.39        36.39        15.58        35.64        35.70 
TCGA-39-5039 TCGA-39-5040 TCGA-43-2576 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 
       17.88        17.06        40.21        22.49        27.02        33.11 
TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 
       11.47        18.05        12.36        24.89        10.19         5.46 
TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 
        3.81         6.97         7.76        66.51        13.38        11.77 
TCGA-43-8118 TCGA-43-A475 TCGA-43-A56U TCGA-43-A56V TCGA-46-3768 TCGA-46-6025 
        2.93         9.73        14.20        12.03         9.99        10.65 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 
       13.91         0.39         0.39        29.95        17.79         5.46 
TCGA-52-7810 TCGA-52-7812 TCGA-56-5897 TCGA-56-5898 TCGA-56-6545 TCGA-56-6546 
       30.35        27.45         0.10        18.25         2.04         0.62 
TCGA-56-7222 TCGA-56-7223 TCGA-56-7580 TCGA-56-7730 TCGA-56-7822 TCGA-56-8504 
        0.43         0.99         1.32         0.20         0.03         5.85 
TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 
        1.81         1.18         2.07         0.56         0.53         1.12 
TCGA-56-A49D TCGA-56-A4BW TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A4ZK 
        1.25         0.07         1.51         0.99         0.82         0.13 
TCGA-56-A5DR TCGA-56-A5DS TCGA-58-8386 TCGA-58-8387 TCGA-58-8390 TCGA-58-8391 
        0.13         0.26         0.03        13.25        29.95        71.24 
TCGA-58-8392 TCGA-58-8393 TCGA-58-A46J TCGA-58-A46K TCGA-58-A46L TCGA-58-A46M 
       16.47        34.78        64.87        34.36        36.59        23.24 
TCGA-58-A46N TCGA-60-2695 TCGA-60-2697 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 
       17.75        21.11        12.23        96.82        37.94        92.71 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.73        80.45        49.48        66.54        41.42         9.01 
TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 
       56.91        50.33        35.34        48.49        42.64         3.19 
TCGA-60-2721 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       32.32        35.90        23.57        26.83        11.77        16.96 
TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2755 
       43.10         2.01        21.07         0.99         1.02         0.92 
TCGA-66-2756 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        21.01        25.05         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         2.01        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       19.00        12.03         3.98        24.95         1.97        25.97 
TCGA-66-2787 TCGA-66-2789 TCGA-66-2790 TCGA-66-2792 TCGA-66-2794 TCGA-66-2800 
       40.01         4.04        22.98        30.02        54.08        49.05 
TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 TCGA-68-A59I 
        2.73         6.64         6.94         8.02         3.16         3.98 
TCGA-68-A59J TCGA-77-6842 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 
        3.42        29.56        23.28        11.18        89.98        20.78 
TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 
        0.49        42.28        70.13       106.95         0.16        46.78 
TCGA-77-7465 TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 TCGA-77-8128 TCGA-77-8131 
       15.75         6.51        86.76        53.95        37.81        12.59 
TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 
       53.92        39.09        17.72       104.09        11.54        26.40 
TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-77-8153 TCGA-77-8156 
       27.39         6.97         9.63        54.41        55.36         0.33 
TCGA-77-A5FZ TCGA-77-A5G3 TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6560 TCGA-85-6561 
      126.18       117.57        30.81        23.44         0.36        12.99 
TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 
        1.12         0.59         0.33         0.03         1.15         1.25 
TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8072 TCGA-85-8276 
        1.97         0.85         1.97         0.53        16.87         0.43 
TCGA-85-8277 TCGA-85-8287 TCGA-85-8288 TCGA-85-8350 TCGA-85-8351 TCGA-85-8352 
        0.36         1.45         1.78         1.97         1.81         2.20 
TCGA-85-8353 TCGA-85-8354 TCGA-85-8479 TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 
        1.78         2.01         0.72        14.63        13.94         0.10 
TCGA-85-8666 TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A50M TCGA-85-A513 TCGA-90-6837 
       15.62         0.49         0.82         0.62         0.79        24.92 
TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 TCGA-90-7964 TCGA-90-A4EE TCGA-92-7340 
        9.50         2.93        11.77        14.07        10.88         2.70 
TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7943 TCGA-96-7544 
        4.01         5.26         2.30         2.86        11.70        39.88 
TCGA-96-7545 TCGA-96-8170 TCGA-96-A4JK TCGA-96-A4JL TCGA-98-7454 TCGA-98-8020 
       44.19         6.94         8.98         6.02         8.42         2.76 
TCGA-98-8021 TCGA-98-8022 TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-L3-A524 TCGA-LA-A446 
       13.58         7.36         7.30         1.15        14.76         1.18 
TCGA-MF-A522 TCGA-NC-A5HG TCGA-NC-A5HI 
        2.73        50.89        37.32 

  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
             0.16              0.03 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
           141.34            173.82 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
           11.475            14.070 
[1] "0.2 - 141.3 (11.5)" "0.0 - 173.8 (14.1)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D46V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  3Q LOSS MUTATED         0        8       18        0         8        12
  3Q LOSS WILD-TYPE       1       61      118        1        42        58
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  3Q LOSS MUTATED           10          4        0
  3Q LOSS WILD-TYPE         44         16        5
D46V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  3Q LOSS MUTATED    13  32  13   3
  3Q LOSS WILD-TYPE  82 218  32  16
D46V4, multiclass
    clus
vv   3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  T1              13                82
  T2              32               218
  T3              13                32
  T4               3                16
                   vv
clus                 N0  N1  N2  N3
  3Q LOSS MUTATED    38  18   4   1
  3Q LOSS WILD-TYPE 217  91  30   4
D46V5, multiclass
    clus
vv   3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  N0              38               217
  N1              18                91
  N2               4                30
  N3               1                 4
                   vv
clus                 M0  M1  MX
  3Q LOSS MUTATED    57   0   3
  3Q LOSS WILD-TYPE 292   5  46
D46V6, multiclass
    clus
vv   3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  M0              57               292
  M1               0                 5
  MX               3                46
D46V7, binary
                   cls
clus                  0   1
  3Q LOSS MUTATED    13  48
  3Q LOSS WILD-TYPE  91 257
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q LOSS MUTATED     13   48
  3Q LOSS WILD-TYPE   91  257
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  FEMALE              13                91
  MALE                48               257
D46V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  3Q LOSS MUTATED                                       1
  3Q LOSS WILD-TYPE                                    11
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  3Q LOSS MUTATED                                        2
  3Q LOSS WILD-TYPE                                      4
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  3Q LOSS MUTATED                                         0
  3Q LOSS WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  3Q LOSS MUTATED                                                            58
  3Q LOSS WILD-TYPE                                                         332
D46V9, multiclass
                                                             clus
vv                                                            3Q LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     1
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    2
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              58
                                                             clus
vv                                                            3Q LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      11
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      4
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               332
D46V10, binary
                   cls
clus                  0   1
  3Q LOSS MUTATED     1  60
  3Q LOSS WILD-TYPE  12 336
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q LOSS MUTATED      1   60
  3Q LOSS WILD-TYPE   12  336
     clus
vv    3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  NO                1                12
  YES              60               336
D46V11, continuous
D46V12, continuous
                   vv
clus                 R0  R1  R2  RX
  3Q LOSS MUTATED    50   2   0   3
  3Q LOSS WILD-TYPE 282   6   4  15
D46V13, multiclass
    clus
vv   3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  R0              50               282
  R1               2                 6
  R2               0                 4
  RX               3                15

Clustering(47) Variable = 4P LOSS MUTATION ANALYSIS
D47V1, survival
                   sevent
clus2                 0   1
  4P LOSS MUTATED   159  83
  4P LOSS WILD-TYPE  85  56
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
              242               141 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
               83                56 
$`4P LOSS MUTATED`
TCGA-18-3407 TCGA-18-3411 TCGA-18-3412 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 
        4.47        46.52        11.34        59.51        28.34        24.92 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-5592 TCGA-21-1070 TCGA-21-1071 
       43.76         6.15         2.79         3.02       119.54        46.88 
TCGA-21-1072 TCGA-21-1076 TCGA-21-1077 TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 
       99.16        60.89        34.78        31.73       122.43         9.34 
TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5786 TCGA-21-5787 TCGA-22-0940 
      119.80         8.78        31.63        33.93        10.82        19.99 
TCGA-22-0944 TCGA-22-1000 TCGA-22-1011 TCGA-22-1012 TCGA-22-4593 TCGA-22-4594 
        7.33        14.93         1.74        14.10        35.08        48.33 
TCGA-22-4595 TCGA-22-4599 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 
       24.13        38.17        13.12        32.02        19.30         9.57 
TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5479 
       31.73        64.93        63.55        14.63        44.25        54.28 
TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-33-4532 
       11.74        18.84        30.12        62.86        56.32         7.63 
TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 
      114.05        97.94        43.10       103.53       141.34        14.07 
TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2600 TCGA-34-2605 
       54.44        10.82        19.76        27.02        61.61        28.96 
TCGA-34-5231 TCGA-34-5232 TCGA-34-5236 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
       50.24        67.79         9.07        14.07        30.94        18.15 
TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 
        4.96         1.12         3.95         0.43         7.82         6.81 
TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5027 
        0.39         3.39        74.07        44.75        68.58        60.79 
TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5037 TCGA-39-5040 TCGA-43-2578 
       27.39        36.39        15.58        35.70        17.06        22.49 
TCGA-43-3394 TCGA-43-6143 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 
       27.02        12.36         5.46         3.81         6.97         7.76 
TCGA-43-8115 TCGA-43-8118 TCGA-43-A474 TCGA-43-A56U TCGA-43-A56V TCGA-46-3768 
       13.38         2.93        11.61        14.20        12.03         9.99 
TCGA-46-6025 TCGA-46-6026 TCGA-51-4081 TCGA-52-7809 TCGA-52-7810 TCGA-52-7811 
       10.65        13.91        29.95         5.46        30.35         8.75 
TCGA-52-7812 TCGA-56-5898 TCGA-56-6545 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 
       27.45        18.25         2.04         0.99         0.43         0.99 
TCGA-56-7579 TCGA-56-7582 TCGA-56-7730 TCGA-56-A49D TCGA-56-A4BW TCGA-56-A4BX 
        1.45         0.85         0.20         1.25         0.07         1.51 
TCGA-56-A4ZK TCGA-56-A5DR TCGA-58-8387 TCGA-58-8392 TCGA-58-8393 TCGA-58-A46J 
        0.13         0.13        13.25        16.47        34.78        64.87 
TCGA-58-A46K TCGA-58-A46L TCGA-58-A46M TCGA-60-2695 TCGA-60-2696 TCGA-60-2698 
       34.36        36.59        23.24        21.11         3.58        10.22 
TCGA-60-2703 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
       96.82        92.71        21.73        80.45        49.48        66.54 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2719 TCGA-60-2720 
       41.42         9.01        56.91        50.33        42.64         3.19 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2726 TCGA-66-2727 
       32.32        29.85        35.90        23.57        11.77        16.96 
TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2753 TCGA-66-2754 TCGA-66-2758 
       43.10         2.01        21.07         1.02         2.01        21.01 
TCGA-66-2759 TCGA-66-2765 TCGA-66-2767 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
       25.05         2.01         2.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       19.00        12.03         3.98        24.95         1.97        25.97 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        5.03        30.02        10.06        54.08         4.01        49.05 
TCGA-68-7755 TCGA-68-7756 TCGA-68-A59J TCGA-77-6843 TCGA-77-6845 TCGA-77-7139 
        2.73         6.64         3.42        73.12        23.28        89.98 
TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7463 TCGA-77-7465 TCGA-77-8009 
        0.49        42.28        70.13        46.78        15.75        53.95 
TCGA-77-8128 TCGA-77-8130 TCGA-77-8133 TCGA-77-8138 TCGA-77-8144 TCGA-77-8145 
       37.81        82.92        53.92        17.72        27.39         6.97 
TCGA-77-8148 TCGA-77-8150 TCGA-77-8153 TCGA-77-8154 TCGA-77-A5G3 TCGA-77-A5GB 
        9.63        54.41        55.36        35.90       117.57        30.81 
TCGA-77-A5GH TCGA-85-6560 TCGA-85-6561 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 
       23.44         0.36        12.99         0.59         0.33         1.61 
TCGA-85-7699 TCGA-85-7843 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 
        0.03         1.15         0.85         1.97         0.53        16.77 
TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 TCGA-85-8288 
       14.07        16.87         0.43         0.36         1.45         1.78 
TCGA-85-8350 TCGA-85-8352 TCGA-85-8353 TCGA-85-8354 TCGA-85-8580 TCGA-85-8664 
        1.97         2.20         1.78         2.01        14.63         0.10 
TCGA-85-8666 TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A53L TCGA-90-7766 TCGA-90-7964 
       15.62         0.49         0.82         0.43         9.50        14.07 
TCGA-90-A4ED TCGA-90-A4EE TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 
        8.02        10.88         2.70         3.48         4.01         5.26 
TCGA-92-8065 TCGA-94-7557 TCGA-94-7943 TCGA-96-A4JK TCGA-98-7454 TCGA-98-8020 
        2.30         0.16        11.70         8.98         8.42         2.76 
TCGA-98-8021 TCGA-L3-A4E7 TCGA-L3-A524 TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE 
       13.58         1.15        14.76         1.18         2.73        56.61 
TCGA-NC-A5HG TCGA-NC-A5HI 
       50.89        37.32 

$`4P LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3414 TCGA-18-3419 
       12.16        81.01        79.46         4.80        13.02         1.64 
TCGA-18-4721 TCGA-18-5595 TCGA-21-1075 TCGA-21-1078 TCGA-21-5783 TCGA-21-5784 
       90.54        27.19        70.16        15.58        88.11        41.69 
TCGA-21-A5DI TCGA-22-1002 TCGA-22-1005 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 
       32.19         4.31        64.21        27.02        48.82        20.48 
TCGA-22-4596 TCGA-22-4601 TCGA-22-4613 TCGA-22-5478 TCGA-22-5480 TCGA-22-5481 
        0.56        34.75        11.77         0.79        71.34        79.20 
TCGA-22-5492 TCGA-22-A5C4 TCGA-33-4566 TCGA-34-2596 TCGA-34-2604 TCGA-34-2608 
       16.64         0.95       173.82         2.63        31.50        32.88 
TCGA-34-2609 TCGA-34-5234 TCGA-34-5239 TCGA-34-5240 TCGA-37-3792 TCGA-37-4129 
       31.27        56.38        23.24        12.00         0.39         6.58 
TCGA-37-4130 TCGA-37-4132 TCGA-39-5011 TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 
        8.12         7.46        47.80        55.20        70.03         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5036 TCGA-39-5039 TCGA-43-2576 TCGA-43-2581 
       24.33         1.94        35.64        17.88        40.21        38.66 
TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6647 TCGA-43-6770 TCGA-43-7658 
       33.11        11.47        18.05        24.89        10.19        66.51 
TCGA-43-8116 TCGA-43-A475 TCGA-51-4079 TCGA-51-4080 TCGA-52-7622 TCGA-56-1622 
       11.77         9.73         0.39         0.39        17.79        28.96 
TCGA-56-5897 TCGA-56-6546 TCGA-56-7580 TCGA-56-7822 TCGA-56-8503 TCGA-56-8504 
        0.10         0.62         1.32         0.03         1.35         5.85 
TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 
        1.81         1.18         2.07         0.56         0.53         1.12 
TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A5DS TCGA-58-8386 TCGA-58-8388 TCGA-58-8390 
        0.99         0.82         0.26         0.03        12.43        29.95 
TCGA-58-8391 TCGA-58-A46N TCGA-60-2697 TCGA-60-2704 TCGA-60-2715 TCGA-60-2716 
       71.24        17.75        12.23        37.94        35.34        48.49 
TCGA-60-2725 TCGA-66-2744 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2763 
       26.83         0.99         0.92         0.99         0.99         0.99 
TCGA-66-2766 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2782 TCGA-66-2787 
        1.02         2.01         7.07        23.01        12.00        40.01 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 
       22.98         4.04        22.98         6.94         8.02         3.16 
TCGA-68-A59I TCGA-77-6842 TCGA-77-6844 TCGA-77-7138 TCGA-77-7140 TCGA-77-7337 
        3.98        29.56        75.09        11.18        20.78       106.95 
TCGA-77-7338 TCGA-77-8007 TCGA-77-8008 TCGA-77-8131 TCGA-77-8136 TCGA-77-8139 
        0.16         6.51        86.76        12.59        39.09       104.09 
TCGA-77-8140 TCGA-77-8143 TCGA-77-8156 TCGA-77-A5FZ TCGA-85-6175 TCGA-85-6798 
       11.54        26.40         0.33       126.18         9.67         1.12 
TCGA-85-7844 TCGA-85-7950 TCGA-85-8351 TCGA-85-8355 TCGA-85-8479 TCGA-85-8481 
        1.25         1.97         1.81         2.01         0.72         0.69 
TCGA-85-8582 TCGA-85-A50M TCGA-85-A513 TCGA-90-6837 TCGA-90-7767 TCGA-90-7769 
       13.94         0.62         0.79        24.92         2.93        11.77 
TCGA-94-7033 TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 TCGA-96-A4JL 
        2.86        39.88        44.19         6.21         6.94         6.02 
TCGA-98-8022 TCGA-98-8023 TCGA-J1-A4AH 
        7.36        10.13         7.30 

  4P LOSS MUTATED 4P LOSS WILD-TYPE 
             0.03              0.03 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
           141.34            173.82 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
            14.63             11.77 
[1] "0.0 - 141.3 (14.6)" "0.0 - 173.8 (11.8)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
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"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
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  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
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  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
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  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
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  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
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"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
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  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
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"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
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"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
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  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
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  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
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"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
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  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
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  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
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"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
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  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
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"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
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  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
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  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
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"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
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  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
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"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
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"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
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  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
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"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
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  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
[1] "hr=" "1.2"
D47V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  4P LOSS MUTATED         0       38       93        1        33        37
  4P LOSS WILD-TYPE       1       31       43        0        17        33
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  4P LOSS MUTATED           36         13        2
  4P LOSS WILD-TYPE         18          7        3
D47V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  4P LOSS MUTATED    55 164  26  10
  4P LOSS WILD-TYPE  40  86  19   9
D47V4, multiclass
    clus
vv   4P LOSS MUTATED 4P LOSS WILD-TYPE
  T1              55                40
  T2             164                86
  T3              26                19
  T4              10                 9
                   vv
clus                 N0  N1  N2  N3
  4P LOSS MUTATED   153  71  24   4
  4P LOSS WILD-TYPE 102  38  10   1
D47V5, multiclass
    clus
vv   4P LOSS MUTATED 4P LOSS WILD-TYPE
  N0             153               102
  N1              71                38
  N2              24                10
  N3               4                 1
                   vv
clus                 M0  M1  MX
  4P LOSS MUTATED   222   2  27
  4P LOSS WILD-TYPE 127   3  22
D47V6, multiclass
    clus
vv   4P LOSS MUTATED 4P LOSS WILD-TYPE
  M0             222               127
  M1               2                 3
  MX              27                22
D47V7, binary
                   cls
clus                  0   1
  4P LOSS MUTATED    61 194
  4P LOSS WILD-TYPE  43 111
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P LOSS MUTATED     61  194
  4P LOSS WILD-TYPE   43  111
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  FEMALE              61                43
  MALE               194               111
D47V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  4P LOSS MUTATED                                       7
  4P LOSS WILD-TYPE                                     5
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  4P LOSS MUTATED                                        1
  4P LOSS WILD-TYPE                                      5
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  4P LOSS MUTATED                                         1
  4P LOSS WILD-TYPE                                       0
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  4P LOSS MUTATED                                                           246
  4P LOSS WILD-TYPE                                                         144
D47V9, multiclass
                                                             clus
vv                                                            4P LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     7
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             246
                                                             clus
vv                                                            4P LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       5
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               144
D47V10, binary
                   cls
clus                  0   1
  4P LOSS MUTATED    11 244
  4P LOSS WILD-TYPE   2 152
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P LOSS MUTATED     11  244
  4P LOSS WILD-TYPE    2  152
     clus
vv    4P LOSS MUTATED 4P LOSS WILD-TYPE
  NO               11                 2
  YES             244               152
D47V11, continuous
D47V12, continuous
                   vv
clus                 R0  R1  R2  RX
  4P LOSS MUTATED   208   4   4  10
  4P LOSS WILD-TYPE 124   4   0   8
D47V13, multiclass
    clus
vv   4P LOSS MUTATED 4P LOSS WILD-TYPE
  R0             208               124
  R1               4                 4
  R2               4                 0
  RX              10                 8

Clustering(48) Variable = 4Q LOSS MUTATION ANALYSIS
D48V1, survival
                   sevent
clus2                 0   1
  4Q LOSS MUTATED   147  79
  4Q LOSS WILD-TYPE  97  60
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
              226               157 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
               79                60 
$`4Q LOSS MUTATED`
TCGA-18-3407 TCGA-18-3411 TCGA-18-3412 TCGA-18-3415 TCGA-18-3416 TCGA-18-4083 
        4.47        46.52        11.34        59.51        28.34         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 
        2.79        90.54         3.02       119.54        46.88        99.16 
TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 
       70.16        60.89        34.78        31.73       122.43         9.34 
TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 
      119.80         8.78        31.63        33.93        10.82         7.33 
TCGA-22-1000 TCGA-22-1011 TCGA-22-1012 TCGA-22-4594 TCGA-22-4595 TCGA-22-4599 
       14.93         1.74        14.10        48.33        24.13        38.17 
TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       13.12        32.02        19.30        11.77        31.73        64.93 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5479 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 
       63.55        14.63        54.28        11.74        18.84        30.12 
TCGA-22-5489 TCGA-22-5491 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4566 
       62.86        56.32         7.63       114.05        97.94       173.82 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 
      103.53       141.34        14.07        54.44        10.82        19.76 
TCGA-34-2600 TCGA-34-2605 TCGA-34-5236 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
       61.61        28.96         9.07        14.07        30.94        18.15 
TCGA-34-5929 TCGA-34-7107 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        4.96         1.12         7.82         6.81         0.39         3.39 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5027 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 
       44.75        68.58        60.79        36.39        15.58        35.64 
TCGA-39-5037 TCGA-39-5040 TCGA-43-2578 TCGA-43-3394 TCGA-43-6143 TCGA-43-6771 
       35.70        17.06        22.49        27.02        12.36         5.46 
TCGA-43-6773 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8118 TCGA-43-A474 
        3.81         7.76        66.51        13.38         2.93        11.61 
TCGA-43-A56U TCGA-43-A56V TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
       14.20        12.03         9.99        10.65        13.91         0.39 
TCGA-51-4081 TCGA-52-7809 TCGA-52-7810 TCGA-52-7811 TCGA-56-5898 TCGA-56-6545 
       29.95         5.46        30.35         8.75        18.25         2.04 
TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7582 TCGA-56-7730 TCGA-56-8625 
        0.99         0.43         0.99         0.85         0.20         2.07 
TCGA-56-8629 TCGA-56-A49D TCGA-56-A4BX TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DR 
        1.12         1.25         1.51         0.82         0.13         0.13 
TCGA-58-8390 TCGA-58-8392 TCGA-58-8393 TCGA-58-A46J TCGA-58-A46K TCGA-58-A46L 
       29.95        16.47        34.78        64.87        34.36        36.59 
TCGA-58-A46M TCGA-60-2695 TCGA-60-2696 TCGA-60-2698 TCGA-60-2703 TCGA-60-2706 
       23.24        21.11         3.58        10.22        96.82        92.71 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 
       21.73        80.45        49.48         9.01        56.91        50.33 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 
       42.64         3.19        32.32        29.85        35.90        23.57 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2753 
       11.77        16.96        43.10         2.01        21.07         1.02 
TCGA-66-2754 TCGA-66-2757 TCGA-66-2758 TCGA-66-2763 TCGA-66-2765 TCGA-66-2771 
        2.01         0.99        21.01         0.99         2.01        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2785 
        3.02         2.01        19.00        12.03         3.98         1.97 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        5.03        30.02        10.06        54.08         4.01        49.05 
TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-A59I TCGA-68-A59J TCGA-77-6843 
        2.73         6.64         6.94         3.98         3.42        73.12 
TCGA-77-6845 TCGA-77-7139 TCGA-77-7141 TCGA-77-7142 TCGA-77-7463 TCGA-77-7465 
       23.28        89.98         0.49        42.28        46.78        15.75 
TCGA-77-8007 TCGA-77-8009 TCGA-77-8128 TCGA-77-8130 TCGA-77-8133 TCGA-77-8136 
        6.51        53.95        37.81        82.92        53.92        39.09 
TCGA-77-8138 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-77-8153 
       17.72        27.39         6.97         9.63        54.41        55.36 
TCGA-77-8154 TCGA-77-A5G3 TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6560 TCGA-85-6561 
       35.90       117.57        30.81        23.44         0.36        12.99 
TCGA-85-6798 TCGA-85-7696 TCGA-85-7699 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 
        1.12         0.59         0.03         0.85         1.97         0.53 
TCGA-85-8070 TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 TCGA-85-8350 
       16.77        16.87         0.43         0.36         1.45         1.97 
TCGA-85-8352 TCGA-85-8353 TCGA-85-8479 TCGA-85-8580 TCGA-85-8664 TCGA-85-8666 
        2.20         1.78         0.72        14.63         0.10        15.62 
TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A53L TCGA-90-7769 TCGA-90-7964 TCGA-90-A4ED 
        0.49         0.82         0.43        11.77        14.07         8.02 
TCGA-90-A4EE TCGA-92-7340 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7557 
       10.88         2.70         4.01         5.26         2.30         0.16 
TCGA-94-7943 TCGA-96-A4JK TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 TCGA-L3-A524 
       11.70         8.98         8.42        13.58         7.36        14.76 
TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HI 
        1.18         2.73        56.61        37.32 

$`4Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3414 TCGA-18-3417 
       12.16        81.01        79.46         4.80        13.02        24.92 
TCGA-18-3419 TCGA-18-3421 TCGA-18-5595 TCGA-21-1078 TCGA-21-5783 TCGA-21-5784 
        1.64        43.76        27.19        15.58        88.11        41.69 
TCGA-21-A5DI TCGA-22-0940 TCGA-22-1002 TCGA-22-1005 TCGA-22-1016 TCGA-22-1017 
       32.19        19.99         4.31        64.21        27.02        48.82 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4596 TCGA-22-4601 TCGA-22-4609 TCGA-22-5477 
       20.48        35.08         0.56        34.75         9.57        44.25 
TCGA-22-5478 TCGA-22-5480 TCGA-22-5481 TCGA-22-5492 TCGA-22-A5C4 TCGA-33-4547 
        0.79        71.34        79.20        16.64         0.95        43.10 
TCGA-33-6738 TCGA-34-2596 TCGA-34-2604 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 
       27.02         2.63        31.50        32.88        31.27        50.24 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5239 TCGA-34-5240 TCGA-37-3783 TCGA-37-3789 
       67.79        56.38        23.24        12.00         3.95         0.43 
TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-39-5011 TCGA-39-5016 
        0.39         6.58         8.12         7.46        47.80        74.07 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 
       55.20        70.03         1.71        24.33         1.94        27.39 
TCGA-39-5039 TCGA-43-2576 TCGA-43-2581 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 
       17.88        40.21        38.66        33.11        11.47        18.05 
TCGA-43-6647 TCGA-43-6770 TCGA-43-7656 TCGA-43-8116 TCGA-43-A475 TCGA-51-4080 
       24.89        10.19         6.97        11.77         9.73         0.39 
TCGA-52-7622 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-6546 TCGA-56-7579 
       17.79        27.45        28.96         0.10         0.62         1.45 
TCGA-56-7580 TCGA-56-7822 TCGA-56-8503 TCGA-56-8504 TCGA-56-8622 TCGA-56-8624 
        1.32         0.03         1.35         5.85         1.81         1.18 
TCGA-56-8626 TCGA-56-8628 TCGA-56-A4BW TCGA-56-A4BY TCGA-56-A5DS TCGA-58-8386 
        0.56         0.53         0.07         0.99         0.26         0.03 
TCGA-58-8387 TCGA-58-8388 TCGA-58-8391 TCGA-58-A46N TCGA-60-2697 TCGA-60-2704 
       13.25        12.43        71.24        17.75        12.23        37.94 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2715 TCGA-60-2716 TCGA-60-2725 TCGA-66-2744 
       66.54        41.42        35.34        48.49        26.83         0.99 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2759 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
        0.92         0.99        25.05         1.02         2.01         2.01 
TCGA-66-2769 TCGA-66-2770 TCGA-66-2782 TCGA-66-2783 TCGA-66-2786 TCGA-66-2787 
        7.07        23.01        12.00        24.95        25.97        40.01 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-68-8250 TCGA-68-8251 TCGA-77-6842 
       22.98         4.04        22.98         8.02         3.16        29.56 
TCGA-77-6844 TCGA-77-7138 TCGA-77-7140 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 
       75.09        11.18        20.78        70.13       106.95         0.16 
TCGA-77-8008 TCGA-77-8131 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 TCGA-77-8156 
       86.76        12.59       104.09        11.54        26.40         0.33 
TCGA-77-A5FZ TCGA-85-6175 TCGA-85-7697 TCGA-85-7698 TCGA-85-7843 TCGA-85-7844 
      126.18         9.67         0.33         1.61         1.15         1.25 
TCGA-85-7950 TCGA-85-8071 TCGA-85-8288 TCGA-85-8351 TCGA-85-8354 TCGA-85-8355 
        1.97        14.07         1.78         1.81         2.01         2.01 
TCGA-85-8481 TCGA-85-8582 TCGA-85-A50M TCGA-85-A513 TCGA-90-6837 TCGA-90-7766 
        0.69        13.94         0.62         0.79        24.92         9.50 
TCGA-90-7767 TCGA-92-7341 TCGA-94-7033 TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 
        2.93         3.48         2.86        39.88        44.19         6.21 
TCGA-96-8170 TCGA-96-A4JL TCGA-98-8020 TCGA-98-8023 TCGA-J1-A4AH TCGA-L3-A4E7 
        6.94         6.02         2.76        10.13         7.30         1.15 
TCGA-NC-A5HG 
       50.89 

  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
             0.03              0.03 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
           173.82            126.18 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
            14.07             12.23 
[1] "0.0 - 173.8 (14.1)" "0.0 - 126.2 (12.2)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
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  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
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  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
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  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
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  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
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  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
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"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
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  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
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  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
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  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
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  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
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  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
[1] "hr=" "1.2"
D48V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  4Q LOSS MUTATED         0       38       89        1        24        40
  4Q LOSS WILD-TYPE       1       31       47        0        26        30
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  4Q LOSS MUTATED           32         11        1
  4Q LOSS WILD-TYPE         22          9        4
D48V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  4Q LOSS MUTATED    49 154  26   9
  4Q LOSS WILD-TYPE  46  96  19  10
D48V4, multiclass
    clus
vv   4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  T1              49                46
  T2             154                96
  T3              26                19
  T4               9                10
                   vv
clus                 N0  N1  N2  N3
  4Q LOSS MUTATED   149  67  17   2
  4Q LOSS WILD-TYPE 106  42  17   3
D48V5, multiclass
    clus
vv   4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  N0             149               106
  N1              67                42
  N2              17                17
  N3               2                 3
                   vv
clus                 M0  M1  MX
  4Q LOSS MUTATED   206   1  27
  4Q LOSS WILD-TYPE 143   4  22
D48V6, multiclass
    clus
vv   4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  M0             206               143
  M1               1                 4
  MX              27                22
D48V7, binary
                   cls
clus                  0   1
  4Q LOSS MUTATED    62 176
  4Q LOSS WILD-TYPE  42 129
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q LOSS MUTATED     62  176
  4Q LOSS WILD-TYPE   42  129
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  FEMALE              62                42
  MALE               176               129
D48V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  4Q LOSS MUTATED                                       5
  4Q LOSS WILD-TYPE                                     7
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  4Q LOSS MUTATED                                        2
  4Q LOSS WILD-TYPE                                      4
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  4Q LOSS MUTATED                                         1
  4Q LOSS WILD-TYPE                                       0
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  4Q LOSS MUTATED                                                           230
  4Q LOSS WILD-TYPE                                                         160
D48V9, multiclass
                                                             clus
vv                                                            4Q LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     5
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    2
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             230
                                                             clus
vv                                                            4Q LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       7
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      4
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               160
D48V10, binary
                   cls
clus                  0   1
  4Q LOSS MUTATED    11 227
  4Q LOSS WILD-TYPE   2 169
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q LOSS MUTATED     11  227
  4Q LOSS WILD-TYPE    2  169
     clus
vv    4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  NO               11                 2
  YES             227               169
D48V11, continuous
D48V12, continuous
                   vv
clus                 R0  R1  R2  RX
  4Q LOSS MUTATED   192   4   3  12
  4Q LOSS WILD-TYPE 140   4   1   6
D48V13, multiclass
    clus
vv   4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  R0             192               140
  R1               4                 4
  R2               3                 1
  RX              12                 6

Clustering(49) Variable = 5P LOSS MUTATION ANALYSIS
D49V1, survival
                   sevent
clus2                 0   1
  5P LOSS MUTATED    42  18
  5P LOSS WILD-TYPE 202 121
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
               60               323 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
               18               121 
$`5P LOSS MUTATED`
TCGA-18-3409 TCGA-18-3410 TCGA-18-4083 TCGA-21-1070 TCGA-21-1079 TCGA-22-4607 
       79.46         4.80         6.15       119.54        31.73        19.30 
TCGA-22-5472 TCGA-22-5479 TCGA-22-5485 TCGA-22-5491 TCGA-33-4532 TCGA-33-4538 
       64.93        54.28        30.12        56.32         7.63        97.94 
TCGA-33-4547 TCGA-33-6737 TCGA-34-2605 TCGA-34-5231 TCGA-37-4130 TCGA-39-5037 
       43.10        19.76        28.96        50.24         8.12        35.70 
TCGA-43-2578 TCGA-43-8118 TCGA-51-4079 TCGA-52-7810 TCGA-56-5897 TCGA-56-5898 
       22.49         2.93         0.39        30.35         0.10        18.25 
TCGA-56-7221 TCGA-56-7730 TCGA-56-8622 TCGA-56-A49D TCGA-58-A46L TCGA-60-2706 
        0.99         0.20         1.81         1.25        36.59        92.71 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2710 TCGA-60-2713 TCGA-60-2722 TCGA-66-2734 
       21.73        80.45        66.54        56.91        29.85        43.10 
TCGA-66-2755 TCGA-66-2789 TCGA-66-2791 TCGA-66-2793 TCGA-68-8250 TCGA-68-8251 
        0.92         4.04         5.03        10.06         8.02         3.16 
TCGA-77-7139 TCGA-77-8140 TCGA-77-8148 TCGA-77-8153 TCGA-77-8154 TCGA-85-6561 
       89.98        11.54         9.63        55.36        35.90        12.99 
TCGA-85-7698 TCGA-85-7950 TCGA-85-8276 TCGA-85-8288 TCGA-85-8352 TCGA-85-8355 
        1.61         1.97         0.43         1.78         2.20         2.01 
TCGA-90-7964 TCGA-92-8063 TCGA-94-7033 TCGA-94-7943 TCGA-NC-A5HG TCGA-NC-A5HI 
       14.07         4.01         2.86        11.70        50.89        37.32 

$`5P LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3411 TCGA-18-3412 TCGA-18-3414 
       12.16         4.47        81.01        46.52        11.34        13.02 
TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4086 
       59.51        28.34        24.92         1.64        43.76         2.79 
TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 
       90.54         3.02        27.19        46.88        99.16        70.16 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 
       60.89        34.78        15.58       122.43         9.34       119.80 
TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 
        8.78        31.63        88.11        41.69        33.93        10.82 
TCGA-21-A5DI TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 
       32.19        19.99         7.33        14.93         4.31        64.21 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 
        1.74        14.10        27.02        48.82        20.48        35.08 
TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 
       48.33        24.13         0.56        38.17        34.75        13.12 
TCGA-22-4605 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5473 TCGA-22-5474 
       32.02         9.57        11.77        31.73        63.55        14.63 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 
       44.25         0.79        71.34        79.20        11.74        18.84 
TCGA-22-5489 TCGA-22-5492 TCGA-22-A5C4 TCGA-33-4533 TCGA-33-4566 TCGA-33-4582 
       62.86        16.64         0.95       114.05       173.82       103.53 
TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-33-6738 TCGA-34-2596 
      141.34        14.07        54.44        10.82        27.02         2.63 
TCGA-34-2600 TCGA-34-2604 TCGA-34-2608 TCGA-34-2609 TCGA-34-5232 TCGA-34-5234 
       61.61        31.50        32.88        31.27        67.79        56.38 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.07        23.24        12.00        14.07        30.94        18.15 
TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 
        4.96         1.12         3.95         0.43         0.39         6.58 
TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 
        7.46         7.82         6.81         0.39         3.39        47.80 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.75        68.58        55.20        70.03        60.79 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 
        1.71        24.33         1.94        27.39        36.39        15.58 
TCGA-39-5036 TCGA-39-5039 TCGA-39-5040 TCGA-43-2576 TCGA-43-2581 TCGA-43-3394 
       35.64        17.88        17.06        40.21        38.66        27.02 
TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       33.11        11.47        18.05        12.36        24.89        10.19 
TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 
        5.46         3.81         6.97         7.76        66.51        13.38 
TCGA-43-8116 TCGA-43-A474 TCGA-43-A475 TCGA-43-A56U TCGA-43-A56V TCGA-46-3768 
       11.77        11.61         9.73        14.20        12.03         9.99 
TCGA-46-6025 TCGA-46-6026 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 
       10.65        13.91         0.39        29.95        17.79         5.46 
TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-6545 TCGA-56-6546 TCGA-56-7222 
        8.75        27.45        28.96         2.04         0.62         0.43 
TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-56-7822 TCGA-56-8503 
        0.99         1.45         1.32         0.85         0.03         1.35 
TCGA-56-8504 TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 
        5.85         1.18         2.07         0.56         0.53         1.12 
TCGA-56-A4BW TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DR 
        0.07         1.51         0.99         0.82         0.13         0.13 
TCGA-56-A5DS TCGA-58-8386 TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 
        0.26         0.03        13.25        12.43        29.95        71.24 
TCGA-58-8392 TCGA-58-8393 TCGA-58-A46J TCGA-58-A46K TCGA-58-A46M TCGA-58-A46N 
       16.47        34.78        64.87        34.36        23.24        17.75 
TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 
       21.11         3.58        12.23        10.22        96.82        37.94 
TCGA-60-2709 TCGA-60-2711 TCGA-60-2712 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 
       49.48        41.42         9.01        50.33        35.34        48.49 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
       42.64         3.19        32.32        35.90        23.57        26.83 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 
       11.77        16.96         2.01        21.07         0.99         1.02 
TCGA-66-2754 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        2.01         0.99         0.99        21.01        25.05         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 
        2.01         1.02         2.01         2.01         7.07        23.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       19.00         3.02         2.01        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
       12.00        24.95         1.97        25.97        40.01        22.98 
TCGA-66-2790 TCGA-66-2792 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 
       22.98        30.02        54.08         4.01        49.05         2.73 
TCGA-68-7756 TCGA-68-7757 TCGA-68-A59I TCGA-68-A59J TCGA-77-6842 TCGA-77-6843 
        6.64         6.94         3.98         3.42        29.56        73.12 
TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 
       75.09        23.28        11.18        20.78         0.49        42.28 
TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 
       70.13       106.95         0.16        46.78        15.75         6.51 
TCGA-77-8008 TCGA-77-8009 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 
       86.76        53.95        37.81        82.92        12.59        53.92 
TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 
       39.09        17.72       104.09        26.40        27.39         6.97 
TCGA-77-8150 TCGA-77-8156 TCGA-77-A5FZ TCGA-77-A5G3 TCGA-77-A5GB TCGA-77-A5GH 
       54.41         0.33       126.18       117.57        30.81        23.44 
TCGA-85-6175 TCGA-85-6560 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 TCGA-85-7699 
        9.67         0.36         1.12         0.59         0.33         0.03 
TCGA-85-7843 TCGA-85-7844 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 
        1.15         1.25         0.85         1.97         0.53        16.77 
TCGA-85-8071 TCGA-85-8072 TCGA-85-8277 TCGA-85-8287 TCGA-85-8350 TCGA-85-8351 
       14.07        16.87         0.36         1.45         1.97         1.81 
TCGA-85-8353 TCGA-85-8354 TCGA-85-8479 TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 
        1.78         2.01         0.72         0.69        14.63        13.94 
TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A50M TCGA-85-A513 
        0.10        15.62         0.49         0.82         0.62         0.79 
TCGA-85-A53L TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 TCGA-90-A4ED 
        0.43        24.92         9.50         2.93        11.77         8.02 
TCGA-90-A4EE TCGA-92-7340 TCGA-92-7341 TCGA-92-8064 TCGA-92-8065 TCGA-94-7557 
       10.88         2.70         3.48         5.26         2.30         0.16 
TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 TCGA-96-A4JK TCGA-96-A4JL 
       39.88        44.19         6.21         6.94         8.98         6.02 
TCGA-98-7454 TCGA-98-8020 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 TCGA-J1-A4AH 
        8.42         2.76        13.58         7.36        10.13         7.30 
TCGA-L3-A4E7 TCGA-L3-A524 TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE 
        1.15        14.76         1.18         2.73        56.61 

  5P LOSS MUTATED 5P LOSS WILD-TYPE 
             0.10              0.03 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
           119.54            173.82 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
            16.16             13.25 
[1] "0.1 - 119.5 (16.2)" "0.0 - 173.8 (13.2)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED"   "5P LOSS MUTATED" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
  "5P LOSS MUTATED"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED"   "5P LOSS MUTATED" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
  "5P LOSS MUTATED"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED"   "5P LOSS MUTATED" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
  "5P LOSS MUTATED"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" 
[1] "hr=" "1.4"
D49V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  5P LOSS MUTATED         0       13       20        0         7         6
  5P LOSS WILD-TYPE       1       56      116        1        43        64
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  5P LOSS MUTATED           11          4        0
  5P LOSS WILD-TYPE         43         16        5
D49V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  5P LOSS MUTATED    22  32   7   2
  5P LOSS WILD-TYPE  73 218  38  17
D49V4, multiclass
    clus
vv   5P LOSS MUTATED 5P LOSS WILD-TYPE
  T1              22                73
  T2              32               218
  T3               7                38
  T4               2                17
                   vv
clus                 N0  N1  N2  N3
  5P LOSS MUTATED    39  14   6   2
  5P LOSS WILD-TYPE 216  95  28   3
D49V5, multiclass
    clus
vv   5P LOSS MUTATED 5P LOSS WILD-TYPE
  N0              39               216
  N1              14                95
  N2               6                28
  N3               2                 3
                   vv
clus                 M0  M1  MX
  5P LOSS MUTATED    54   0   7
  5P LOSS WILD-TYPE 295   5  42
D49V6, multiclass
    clus
vv   5P LOSS MUTATED 5P LOSS WILD-TYPE
  M0              54               295
  M1               0                 5
  MX               7                42
D49V7, binary
                   cls
clus                  0   1
  5P LOSS MUTATED    13  50
  5P LOSS WILD-TYPE  91 255
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P LOSS MUTATED     13   50
  5P LOSS WILD-TYPE   91  255
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  FEMALE              13                91
  MALE                50               255
D49V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  5P LOSS MUTATED                                       3
  5P LOSS WILD-TYPE                                     9
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  5P LOSS MUTATED                                        1
  5P LOSS WILD-TYPE                                      5
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  5P LOSS MUTATED                                         0
  5P LOSS WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  5P LOSS MUTATED                                                            59
  5P LOSS WILD-TYPE                                                         331
D49V9, multiclass
                                                             clus
vv                                                            5P LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     3
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              59
                                                             clus
vv                                                            5P LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       9
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               331
D49V10, binary
                   cls
clus                  0   1
  5P LOSS MUTATED     4  59
  5P LOSS WILD-TYPE   9 337
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P LOSS MUTATED      4   59
  5P LOSS WILD-TYPE    9  337
     clus
vv    5P LOSS MUTATED 5P LOSS WILD-TYPE
  NO                4                 9
  YES              59               337
D49V11, continuous
D49V12, continuous
                   vv
clus                 R0  R1  R2  RX
  5P LOSS MUTATED    46   1   0   5
  5P LOSS WILD-TYPE 286   7   4  13
D49V13, multiclass
    clus
vv   5P LOSS MUTATED 5P LOSS WILD-TYPE
  R0              46               286
  R1               1                 7
  R2               0                 4
  RX               5                13

Clustering(50) Variable = 5Q LOSS MUTATION ANALYSIS
D50V1, survival
                   sevent
clus2                 0   1
  5Q LOSS MUTATED   151  72
  5Q LOSS WILD-TYPE  93  67
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
              223               160 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
               72                67 
$`5Q LOSS MUTATED`
TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 TCGA-18-3414 
       81.01        79.46         4.80        46.52        11.34        13.02 
TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 
       59.51        28.34        24.92         6.15         2.79        90.54 
TCGA-21-1070 TCGA-21-1072 TCGA-21-1079 TCGA-21-1082 TCGA-21-5784 TCGA-21-5786 
      119.54        99.16        31.73       119.80        41.69        33.93 
TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-4591 
       10.82        19.99         7.33         4.31         1.74        20.48 
TCGA-22-4593 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 
       35.08        38.17        34.75        13.12        32.02        19.30 
TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
        9.57        11.77        31.73        64.93        63.55        14.63 
TCGA-22-5477 TCGA-22-5479 TCGA-22-5485 TCGA-22-5491 TCGA-33-4532 TCGA-33-4533 
       44.25        54.28        30.12        56.32         7.63       114.05 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4586 TCGA-33-4587 TCGA-33-6737 TCGA-33-6738 
       97.94        43.10        14.07        54.44        19.76        27.02 
TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 
       61.61        31.50        28.96        32.88        31.27        50.24 
TCGA-34-5239 TCGA-34-5927 TCGA-34-5929 TCGA-34-7107 TCGA-37-4130 TCGA-37-4132 
       23.24        30.94         4.96         1.12         8.12         7.46 
TCGA-37-4133 TCGA-37-4135 TCGA-39-5011 TCGA-39-5016 TCGA-39-5024 TCGA-39-5027 
        7.82         6.81        47.80        74.07        70.03        60.79 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5036 TCGA-39-5037 TCGA-43-2576 TCGA-43-2578 
        1.94        27.39        35.64        35.70        40.21        22.49 
TCGA-43-2581 TCGA-43-3394 TCGA-43-5668 TCGA-43-5670 TCGA-43-6647 TCGA-43-6770 
       38.66        27.02        11.47        18.05        24.89        10.19 
TCGA-43-6773 TCGA-43-7656 TCGA-43-8116 TCGA-43-8118 TCGA-43-A474 TCGA-43-A56U 
        3.81         6.97        11.77         2.93        11.61        14.20 
TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4081 TCGA-52-7622 
        9.99        10.65        13.91         0.39        29.95        17.79 
TCGA-52-7809 TCGA-52-7810 TCGA-52-7811 TCGA-56-5897 TCGA-56-5898 TCGA-56-6546 
        5.46        30.35         8.75         0.10        18.25         0.62 
TCGA-56-7221 TCGA-56-7579 TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 TCGA-56-8622 
        0.99         1.45         0.85         0.20         0.03         1.81 
TCGA-56-8625 TCGA-56-8628 TCGA-56-8629 TCGA-56-A49D TCGA-56-A4BX TCGA-56-A4BY 
        2.07         0.53         1.12         1.25         1.51         0.99 
TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DR TCGA-56-A5DS TCGA-58-8387 TCGA-58-8388 
        0.82         0.13         0.13         0.26        13.25        12.43 
TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 TCGA-58-A46J TCGA-58-A46K TCGA-58-A46L 
       29.95        71.24        16.47        64.87        34.36        36.59 
TCGA-60-2695 TCGA-60-2696 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
       21.11         3.58        92.71        21.73        80.45        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2713 TCGA-60-2714 TCGA-60-2720 TCGA-60-2721 
       66.54        41.42        56.91        50.33         3.19        32.32 
TCGA-60-2722 TCGA-60-2723 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 
       29.85        35.90        16.96        43.10         2.01        21.07 
TCGA-66-2753 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2759 TCGA-66-2763 
        1.02         0.92         0.99         0.99        25.05         0.99 
TCGA-66-2766 TCGA-66-2769 TCGA-66-2773 TCGA-66-2777 TCGA-66-2780 TCGA-66-2781 
        1.02         7.07         3.02         2.01        12.03         3.98 
TCGA-66-2782 TCGA-66-2785 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 
       12.00         1.97        40.01        22.98         4.04         5.03 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 
       10.06        54.08        49.05         2.73         6.64         6.94 
TCGA-68-8250 TCGA-68-8251 TCGA-77-7139 TCGA-77-7141 TCGA-77-7142 TCGA-77-7338 
        8.02         3.16        89.98         0.49        42.28         0.16 
TCGA-77-8007 TCGA-77-8128 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 
        6.51        37.81        39.09        17.72       104.09        11.54 
TCGA-77-8143 TCGA-77-8145 TCGA-77-8148 TCGA-77-8153 TCGA-77-8154 TCGA-77-A5G3 
       26.40         6.97         9.63        55.36        35.90       117.57 
TCGA-77-A5GH TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 TCGA-85-7697 TCGA-85-7698 
       23.44         0.36        12.99         1.12         0.33         1.61 
TCGA-85-7843 TCGA-85-7950 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 
        1.15         1.97         0.53        16.77        14.07        16.87 
TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 TCGA-85-8288 TCGA-85-8351 TCGA-85-8352 
        0.43         0.36         1.45         1.78         1.81         2.20 
TCGA-85-8353 TCGA-85-8354 TCGA-85-8355 TCGA-85-8481 TCGA-85-8580 TCGA-85-8666 
        1.78         2.01         2.01         0.69        14.63        15.62 
TCGA-85-A4QR TCGA-90-7766 TCGA-90-7767 TCGA-90-7964 TCGA-90-A4EE TCGA-92-8063 
        0.82         9.50         2.93        14.07        10.88         4.01 
TCGA-92-8064 TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 TCGA-96-7545 
        5.26         2.86         0.16        11.70        39.88        44.19 
TCGA-96-A4JK TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 TCGA-L3-A524 TCGA-NC-A5HG 
        8.98        13.58         7.36        10.13        14.76        50.89 
TCGA-NC-A5HI 
       37.32 

$`5Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3419 TCGA-18-3421 TCGA-18-5592 TCGA-18-5595 
       12.16         4.47         1.64        43.76         3.02        27.19 
TCGA-21-1071 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1080 
       46.88        70.16        60.89        34.78        15.58       122.43 
TCGA-21-1081 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 TCGA-21-A5DI TCGA-22-1000 
        9.34         8.78        31.63        88.11        32.19        14.93 
TCGA-22-1005 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4594 TCGA-22-4595 
       64.21        14.10        27.02        48.82        48.33        24.13 
TCGA-22-4596 TCGA-22-5478 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 
        0.56         0.79        71.34        79.20        11.74        18.84 
TCGA-22-5489 TCGA-22-5492 TCGA-22-A5C4 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 
       62.86        16.64         0.95       173.82       103.53       141.34 
TCGA-33-4589 TCGA-34-2596 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5240 
       10.82         2.63        67.79        56.38         9.07        12.00 
TCGA-34-5241 TCGA-34-5928 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 
       14.07        18.15         3.95         0.43         0.39         6.58 
TCGA-37-4141 TCGA-37-5819 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5028 
        0.39         3.39        44.75        68.58        55.20         1.71 
TCGA-39-5029 TCGA-39-5034 TCGA-39-5035 TCGA-39-5039 TCGA-39-5040 TCGA-43-3920 
       24.33        36.39        15.58        17.88        17.06        33.11 
TCGA-43-6143 TCGA-43-6771 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-A475 
       12.36         5.46         7.76        66.51        13.38         9.73 
TCGA-43-A56V TCGA-51-4080 TCGA-52-7812 TCGA-56-1622 TCGA-56-6545 TCGA-56-7222 
       12.03         0.39        27.45        28.96         2.04         0.43 
TCGA-56-7223 TCGA-56-7580 TCGA-56-8503 TCGA-56-8504 TCGA-56-8624 TCGA-56-8626 
        0.99         1.32         1.35         5.85         1.18         0.56 
TCGA-56-A4BW TCGA-58-8386 TCGA-58-8393 TCGA-58-A46M TCGA-58-A46N TCGA-60-2697 
        0.07         0.03        34.78        23.24        17.75        12.23 
TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2712 TCGA-60-2715 TCGA-60-2716 
       10.22        96.82        37.94         9.01        35.34        48.49 
TCGA-60-2719 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2744 TCGA-66-2754 
       42.64        23.57        26.83        11.77         0.99         2.01 
TCGA-66-2758 TCGA-66-2765 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 
       21.01         2.01         2.01         2.01        23.01        19.00 
TCGA-66-2778 TCGA-66-2783 TCGA-66-2786 TCGA-66-2790 TCGA-66-2792 TCGA-66-2795 
       19.00        24.95        25.97        22.98        30.02         4.01 
TCGA-68-A59I TCGA-68-A59J TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 
        3.98         3.42        29.56        73.12        75.09        23.28 
TCGA-77-7138 TCGA-77-7140 TCGA-77-7335 TCGA-77-7337 TCGA-77-7463 TCGA-77-7465 
       11.18        20.78        70.13       106.95        46.78        15.75 
TCGA-77-8008 TCGA-77-8009 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8144 
       86.76        53.95        82.92        12.59        53.92        27.39 
TCGA-77-8150 TCGA-77-8156 TCGA-77-A5FZ TCGA-77-A5GB TCGA-85-6175 TCGA-85-7696 
       54.41         0.33       126.18        30.81         9.67         0.59 
TCGA-85-7699 TCGA-85-7844 TCGA-85-8048 TCGA-85-8049 TCGA-85-8350 TCGA-85-8479 
        0.03         1.25         0.85         1.97         1.97         0.72 
TCGA-85-8582 TCGA-85-8664 TCGA-85-A4CL TCGA-85-A50M TCGA-85-A513 TCGA-85-A53L 
       13.94         0.10         0.49         0.62         0.79         0.43 
TCGA-90-6837 TCGA-90-7769 TCGA-90-A4ED TCGA-92-7340 TCGA-92-7341 TCGA-92-8065 
       24.92        11.77         8.02         2.70         3.48         2.30 
TCGA-96-8169 TCGA-96-8170 TCGA-96-A4JL TCGA-98-7454 TCGA-98-8020 TCGA-J1-A4AH 
        6.21         6.94         6.02         8.42         2.76         7.30 
TCGA-L3-A4E7 TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE 
        1.15         1.18         2.73        56.61 

  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
             0.03              0.03 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
           119.80            173.82 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
            13.25             13.66 
[1] "0.0 - 119.8 (13.2)" "0.0 - 173.8 (13.7)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
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"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
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"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
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"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
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  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
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"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
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  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
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  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
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"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
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"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
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"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
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  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
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"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
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  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
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"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
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"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
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  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
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  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
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  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
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"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
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  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
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"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
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  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
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  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
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  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
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"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
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  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
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"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
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"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
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  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
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"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
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  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
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"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
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  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
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  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
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  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
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  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
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  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
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  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
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  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
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"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
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  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
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  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
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  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
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  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
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  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
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  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
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  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
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"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
[1] "hr=" "1.2"
D50V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  5Q LOSS MUTATED         0       43       81        1        30        30
  5Q LOSS WILD-TYPE       1       26       55        0        20        40
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  5Q LOSS MUTATED           35         13        4
  5Q LOSS WILD-TYPE         19          7        1
D50V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  5Q LOSS MUTATED    58 144  24  13
  5Q LOSS WILD-TYPE  37 106  21   6
D50V4, multiclass
    clus
vv   5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  T1              58                37
  T2             144               106
  T3              24                21
  T4              13                 6
                   vv
clus                 N0  N1  N2  N3
  5Q LOSS MUTATED   157  57  21   2
  5Q LOSS WILD-TYPE  98  52  13   3
D50V5, multiclass
    clus
vv   5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  N0             157                98
  N1              57                52
  N2              21                13
  N3               2                 3
                   vv
clus                 M0  M1  MX
  5Q LOSS MUTATED   201   4  32
  5Q LOSS WILD-TYPE 148   1  17
D50V6, multiclass
    clus
vv   5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  M0             201               148
  M1               4                 1
  MX              32                17
D50V7, binary
                   cls
clus                  0   1
  5Q LOSS MUTATED    63 176
  5Q LOSS WILD-TYPE  41 129
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q LOSS MUTATED     63  176
  5Q LOSS WILD-TYPE   41  129
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  FEMALE              63                41
  MALE               176               129
D50V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  5Q LOSS MUTATED                                       8
  5Q LOSS WILD-TYPE                                     4
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  5Q LOSS MUTATED                                        2
  5Q LOSS WILD-TYPE                                      4
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  5Q LOSS MUTATED                                         1
  5Q LOSS WILD-TYPE                                       0
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  5Q LOSS MUTATED                                                           228
  5Q LOSS WILD-TYPE                                                         162
D50V9, multiclass
                                                             clus
vv                                                            5Q LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     8
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    2
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             228
                                                             clus
vv                                                            5Q LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       4
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      4
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               162
D50V10, binary
                   cls
clus                  0   1
  5Q LOSS MUTATED    10 229
  5Q LOSS WILD-TYPE   3 167
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q LOSS MUTATED     10  229
  5Q LOSS WILD-TYPE    3  167
     clus
vv    5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  NO               10                 3
  YES             229               167
D50V11, continuous
D50V12, continuous
                   vv
clus                 R0  R1  R2  RX
  5Q LOSS MUTATED   188   6   2  11
  5Q LOSS WILD-TYPE 144   2   2   7
D50V13, multiclass
    clus
vv   5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  R0             188               144
  R1               6                 2
  R2               2                 2
  RX              11                 7

Clustering(51) Variable = 6P LOSS MUTATION ANALYSIS
D51V1, survival
                   sevent
clus2                 0   1
  6P LOSS MUTATED    49  33
  6P LOSS WILD-TYPE 195 106
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               82               301 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               33               106 
$`6P LOSS MUTATED`
TCGA-18-3408 TCGA-18-3412 TCGA-18-3415 TCGA-18-3416 TCGA-18-4083 TCGA-18-4721 
       81.01        11.34        59.51        28.34         6.15        90.54 
TCGA-18-5592 TCGA-21-1076 TCGA-21-5783 TCGA-22-0940 TCGA-22-1012 TCGA-22-4595 
        3.02        60.89        88.11        19.99        14.10        24.13 
TCGA-22-4596 TCGA-22-4599 TCGA-22-4609 TCGA-22-5473 TCGA-22-5477 TCGA-22-5478 
        0.56        38.17         9.57        63.55        44.25         0.79 
TCGA-22-5479 TCGA-22-5483 TCGA-22-5492 TCGA-33-4547 TCGA-33-4583 TCGA-34-2596 
       54.28        18.84        16.64        43.10       141.34         2.63 
TCGA-34-2604 TCGA-37-5819 TCGA-39-5016 TCGA-39-5021 TCGA-39-5027 TCGA-39-5034 
       31.50         3.39        74.07        68.58        60.79        36.39 
TCGA-39-5037 TCGA-39-5039 TCGA-43-6143 TCGA-43-8115 TCGA-43-8118 TCGA-43-A474 
       35.70        17.88        12.36        13.38         2.93        11.61 
TCGA-43-A475 TCGA-43-A56V TCGA-46-3768 TCGA-46-6025 TCGA-51-4081 TCGA-52-7622 
        9.73        12.03         9.99        10.65        29.95        17.79 
TCGA-56-7579 TCGA-56-7582 TCGA-56-8624 TCGA-56-A4ZK TCGA-58-8386 TCGA-60-2698 
        1.45         0.85         1.18         0.13         0.03        10.22 
TCGA-60-2707 TCGA-60-2722 TCGA-60-2726 TCGA-66-2758 TCGA-66-2780 TCGA-66-2782 
       21.73        29.85        11.77        21.01        12.03        12.00 
TCGA-66-2786 TCGA-66-2789 TCGA-66-2792 TCGA-66-2794 TCGA-68-7755 TCGA-68-7756 
       25.97         4.04        30.02        54.08         2.73         6.64 
TCGA-68-A59I TCGA-77-8007 TCGA-77-8009 TCGA-77-8128 TCGA-77-8131 TCGA-77-8140 
        3.98         6.51        53.95        37.81        12.59        11.54 
TCGA-77-8150 TCGA-77-A5G3 TCGA-85-7696 TCGA-85-7698 TCGA-85-7950 TCGA-85-8049 
       54.41       117.57         0.59         1.61         1.97         1.97 
TCGA-85-8070 TCGA-85-8277 TCGA-85-8666 TCGA-90-7767 TCGA-92-7341 TCGA-92-8064 
       16.77         0.36        15.62         2.93         3.48         5.26 
TCGA-92-8065 TCGA-96-7544 TCGA-96-A4JK TCGA-J1-A4AH 
        2.30        39.88         8.98         7.30 

$`6P LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 TCGA-18-3414 
       12.16         4.47        79.46         4.80        46.52        13.02 
TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4086 TCGA-18-5595 TCGA-21-1070 
       24.92         1.64        43.76         2.79        27.19       119.54 
TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 
       46.88        99.16        70.16        34.78        15.58        31.73 
TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5784 
      122.43         9.34       119.80         8.78        31.63        41.69 
TCGA-21-5786 TCGA-21-5787 TCGA-21-A5DI TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 
       33.93        10.82        32.19         7.33        14.93         4.31 
TCGA-22-1005 TCGA-22-1011 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 
       64.21         1.74        27.02        48.82        20.48        35.08 
TCGA-22-4594 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4613 
       48.33        34.75        13.12        32.02        19.30        11.77 
TCGA-22-5471 TCGA-22-5472 TCGA-22-5474 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 
       31.73        64.93        14.63        71.34        79.20        11.74 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-A5C4 TCGA-33-4532 TCGA-33-4533 
       30.12        62.86        56.32         0.95         7.63       114.05 
TCGA-33-4538 TCGA-33-4566 TCGA-33-4582 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 
       97.94       173.82       103.53        14.07        54.44        10.82 
TCGA-33-6737 TCGA-33-6738 TCGA-34-2600 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 
       19.76        27.02        61.61        28.96        32.88        31.27 
TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 
       50.24        67.79        56.38         9.07        23.24        12.00 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 
       14.07        30.94        18.15         4.96         1.12         3.95 
TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 
        0.43         0.39         6.58         8.12         7.46         7.82 
TCGA-37-4135 TCGA-37-4141 TCGA-39-5011 TCGA-39-5019 TCGA-39-5022 TCGA-39-5024 
        6.81         0.39        47.80        44.75        55.20        70.03 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 
        1.71        24.33         1.94        27.39        15.58        35.64 
TCGA-39-5040 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 
       17.06        40.21        22.49        38.66        27.02        33.11 
TCGA-43-5668 TCGA-43-5670 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 
       11.47        18.05        24.89        10.19         5.46         3.81 
TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8116 TCGA-43-A56U TCGA-46-6026 
        6.97         7.76        66.51        11.77        14.20        13.91 
TCGA-51-4079 TCGA-51-4080 TCGA-52-7809 TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 
        0.39         0.39         5.46        30.35         8.75        27.45 
TCGA-56-1622 TCGA-56-5897 TCGA-56-5898 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 
       28.96         0.10        18.25         2.04         0.62         0.99 
TCGA-56-7222 TCGA-56-7223 TCGA-56-7580 TCGA-56-7730 TCGA-56-7822 TCGA-56-8503 
        0.43         0.99         1.32         0.20         0.03         1.35 
TCGA-56-8504 TCGA-56-8622 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 
        5.85         1.81         2.07         0.56         0.53         1.12 
TCGA-56-A49D TCGA-56-A4BW TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A5DR 
        1.25         0.07         1.51         0.99         0.82         0.13 
TCGA-56-A5DS TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 
        0.26        13.25        12.43        29.95        71.24        16.47 
TCGA-58-8393 TCGA-58-A46J TCGA-58-A46K TCGA-58-A46L TCGA-58-A46M TCGA-58-A46N 
       34.78        64.87        34.36        36.59        23.24        17.75 
TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 
       21.11         3.58        12.23        96.82        37.94        92.71 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 
       80.45        49.48        66.54        41.42         9.01        56.91 
TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
       50.33        35.34        48.49        42.64         3.19        32.32 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 
       35.90        23.57        26.83        16.96        43.10         2.01 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       21.07         0.99         1.02         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 
        0.99        25.05         0.99         2.01         1.02         2.01 
TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         7.07        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2781 TCGA-66-2783 TCGA-66-2785 TCGA-66-2787 TCGA-66-2788 
       19.00         3.98        24.95         1.97        40.01        22.98 
TCGA-66-2790 TCGA-66-2791 TCGA-66-2793 TCGA-66-2795 TCGA-66-2800 TCGA-68-7757 
       22.98         5.03        10.06         4.01        49.05         6.94 
TCGA-68-8250 TCGA-68-8251 TCGA-68-A59J TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 
        8.02         3.16         3.42        29.56        73.12        75.09 
TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 
       23.28        11.18        89.98        20.78         0.49        42.28 
TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8008 
       70.13       106.95         0.16        46.78        15.75        86.76 
TCGA-77-8130 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8143 
       82.92        53.92        39.09        17.72       104.09        26.40 
TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8153 TCGA-77-8154 TCGA-77-8156 
       27.39         6.97         9.63        55.36        35.90         0.33 
TCGA-77-A5FZ TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6175 TCGA-85-6560 TCGA-85-6561 
      126.18        30.81        23.44         9.67         0.36        12.99 
TCGA-85-6798 TCGA-85-7697 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 TCGA-85-8048 
        1.12         0.33         0.03         1.15         1.25         0.85 
TCGA-85-8052 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8287 TCGA-85-8288 
        0.53        14.07        16.87         0.43         1.45         1.78 
TCGA-85-8350 TCGA-85-8351 TCGA-85-8352 TCGA-85-8353 TCGA-85-8354 TCGA-85-8355 
        1.97         1.81         2.20         1.78         2.01         2.01 
TCGA-85-8479 TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 TCGA-85-A4CL 
        0.72         0.69        14.63        13.94         0.10         0.49 
TCGA-85-A4QR TCGA-85-A50M TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 TCGA-90-7766 
        0.82         0.62         0.79         0.43        24.92         9.50 
TCGA-90-7769 TCGA-90-7964 TCGA-90-A4ED TCGA-90-A4EE TCGA-92-7340 TCGA-92-8063 
       11.77        14.07         8.02        10.88         2.70         4.01 
TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 
        2.86         0.16        11.70        44.19         6.21         6.94 
TCGA-96-A4JL TCGA-98-7454 TCGA-98-8020 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
        6.02         8.42         2.76        13.58         7.36        10.13 
TCGA-L3-A4E7 TCGA-L3-A524 TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HG 
        1.15        14.76         1.18         2.73        56.61        50.89 
TCGA-NC-A5HI 
       37.32 

  6P LOSS MUTATED 6P LOSS WILD-TYPE 
             0.03              0.03 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
           141.34            173.82 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
           12.475            13.910 
[1] "0.0 - 141.3 (12.5)" "0.0 - 173.8 (13.9)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "6P LOSS MUTATED"   "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "6P LOSS MUTATED"   "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "6P LOSS MUTATED"   "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D51V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  6P LOSS MUTATED         0       10       31        0        14        22
  6P LOSS WILD-TYPE       1       59      105        1        36        48
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  6P LOSS MUTATED           12          2        1
  6P LOSS WILD-TYPE         42         18        4
D51V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  6P LOSS MUTATED    19  55  16   2
  6P LOSS WILD-TYPE  76 195  29  17
D51V4, multiclass
    clus
vv   6P LOSS MUTATED 6P LOSS WILD-TYPE
  T1              19                76
  T2              55               195
  T3              16                29
  T4               2                17
                   vv
clus                 N0  N1  N2  N3
  6P LOSS MUTATED    51  32   6   1
  6P LOSS WILD-TYPE 204  77  28   4
D51V5, multiclass
    clus
vv   6P LOSS MUTATED 6P LOSS WILD-TYPE
  N0              51               204
  N1              32                77
  N2               6                28
  N3               1                 4
                   vv
clus                 M0  M1  MX
  6P LOSS MUTATED    81   1   9
  6P LOSS WILD-TYPE 268   4  40
D51V6, multiclass
    clus
vv   6P LOSS MUTATED 6P LOSS WILD-TYPE
  M0              81               268
  M1               1                 4
  MX               9                40
D51V7, binary
                   cls
clus                  0   1
  6P LOSS MUTATED    21  71
  6P LOSS WILD-TYPE  83 234
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P LOSS MUTATED     21   71
  6P LOSS WILD-TYPE   83  234
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  FEMALE              21                83
  MALE                71               234
D51V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  6P LOSS MUTATED                                       2
  6P LOSS WILD-TYPE                                    10
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  6P LOSS MUTATED                                        1
  6P LOSS WILD-TYPE                                      5
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  6P LOSS MUTATED                                         0
  6P LOSS WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  6P LOSS MUTATED                                                            89
  6P LOSS WILD-TYPE                                                         301
D51V9, multiclass
                                                             clus
vv                                                            6P LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     2
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              89
                                                             clus
vv                                                            6P LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      10
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               301
D51V10, binary
                   cls
clus                  0   1
  6P LOSS MUTATED     2  90
  6P LOSS WILD-TYPE  11 306
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P LOSS MUTATED      2   90
  6P LOSS WILD-TYPE   11  306
     clus
vv    6P LOSS MUTATED 6P LOSS WILD-TYPE
  NO                2                11
  YES              90               306
D51V11, continuous
D51V12, continuous
                   vv
clus                 R0  R1  R2  RX
  6P LOSS MUTATED    77   2   0   7
  6P LOSS WILD-TYPE 255   6   4  11
D51V13, multiclass
    clus
vv   6P LOSS MUTATED 6P LOSS WILD-TYPE
  R0              77               255
  R1               2                 6
  R2               0                 4
  RX               7                11

Clustering(52) Variable = 6Q LOSS MUTATION ANALYSIS
D52V1, survival
                   sevent
clus2                 0   1
  6Q LOSS MUTATED    55  31
  6Q LOSS WILD-TYPE 189 108
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               86               297 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               31               108 
$`6Q LOSS MUTATED`
TCGA-18-3408 TCGA-18-3411 TCGA-18-3412 TCGA-18-3415 TCGA-18-3416 TCGA-18-4083 
       81.01        46.52        11.34        59.51        28.34         6.15 
TCGA-18-5592 TCGA-21-1076 TCGA-21-5783 TCGA-21-5787 TCGA-22-0940 TCGA-22-4595 
        3.02        60.89        88.11        10.82        19.99        24.13 
TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4607 TCGA-22-5478 TCGA-22-5479 
        0.56        38.17        34.75        19.30         0.79        54.28 
TCGA-22-5483 TCGA-22-5492 TCGA-33-4582 TCGA-33-4583 TCGA-34-2596 TCGA-34-2604 
       18.84        16.64       103.53       141.34         2.63        31.50 
TCGA-34-5928 TCGA-37-5819 TCGA-39-5016 TCGA-39-5021 TCGA-39-5027 TCGA-39-5034 
       18.15         3.39        74.07        68.58        60.79        36.39 
TCGA-39-5037 TCGA-39-5039 TCGA-43-2581 TCGA-43-6143 TCGA-43-8115 TCGA-43-8118 
       35.70        17.88        38.66        12.36        13.38         2.93 
TCGA-46-6025 TCGA-51-4081 TCGA-52-7622 TCGA-52-7812 TCGA-56-7582 TCGA-56-7730 
       10.65        29.95        17.79        27.45         0.85         0.20 
TCGA-56-8624 TCGA-56-8625 TCGA-56-A4BY TCGA-56-A4ZK TCGA-58-8386 TCGA-58-A46M 
        1.18         2.07         0.99         0.13         0.03        23.24 
TCGA-60-2707 TCGA-60-2722 TCGA-60-2726 TCGA-66-2758 TCGA-66-2763 TCGA-66-2773 
       21.73        29.85        11.77        21.01         0.99         3.02 
TCGA-66-2780 TCGA-66-2782 TCGA-66-2783 TCGA-66-2792 TCGA-66-2795 TCGA-68-7755 
       12.03        12.00        24.95        30.02         4.01         2.73 
TCGA-68-7756 TCGA-68-A59I TCGA-77-7141 TCGA-77-8007 TCGA-77-8009 TCGA-77-8131 
        6.64         3.98         0.49         6.51        53.95        12.59 
TCGA-77-8140 TCGA-77-8150 TCGA-85-6560 TCGA-85-7696 TCGA-85-7698 TCGA-85-8052 
       11.54        54.41         0.36         0.59         1.61         0.53 
TCGA-85-8070 TCGA-85-8072 TCGA-85-8277 TCGA-85-8354 TCGA-85-8479 TCGA-85-A4QR 
       16.77        16.87         0.36         2.01         0.72         0.82 
TCGA-85-A50M TCGA-90-7767 TCGA-92-7341 TCGA-92-8065 TCGA-96-7544 TCGA-96-A4JK 
        0.62         2.93         3.48         2.30        39.88         8.98 
TCGA-J1-A4AH TCGA-NC-A5HG 
        7.30        50.89 

$`6Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3409 TCGA-18-3410 TCGA-18-3414 TCGA-18-3417 
       12.16         4.47        79.46         4.80        13.02        24.92 
TCGA-18-3419 TCGA-18-3421 TCGA-18-4086 TCGA-18-4721 TCGA-18-5595 TCGA-21-1070 
        1.64        43.76         2.79        90.54        27.19       119.54 
TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 
       46.88        99.16        70.16        34.78        15.58        31.73 
TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5784 
      122.43         9.34       119.80         8.78        31.63        41.69 
TCGA-21-5786 TCGA-21-A5DI TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 
       33.93        32.19         7.33        14.93         4.31        64.21 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 
        1.74        14.10        27.02        48.82        20.48        35.08 
TCGA-22-4594 TCGA-22-4604 TCGA-22-4605 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 
       48.33        13.12        32.02         9.57        11.77        31.73 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5480 TCGA-22-5481 
       64.93        63.55        14.63        44.25        71.34        79.20 
TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-A5C4 TCGA-33-4532 
       11.74        30.12        62.86        56.32         0.95         7.63 
TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4586 TCGA-33-4587 
      114.05        97.94        43.10       173.82        14.07        54.44 
TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2600 TCGA-34-2605 TCGA-34-2608 
       10.82        19.76        27.02        61.61        28.96        32.88 
TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       31.27        50.24        67.79        56.38         9.07        23.24 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 
       12.00        14.07        30.94         4.96         1.12         3.95 
TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 
        0.43         0.39         6.58         8.12         7.46         7.82 
TCGA-37-4135 TCGA-37-4141 TCGA-39-5011 TCGA-39-5019 TCGA-39-5022 TCGA-39-5024 
        6.81         0.39        47.80        44.75        55.20        70.03 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 
        1.71        24.33         1.94        27.39        15.58        35.64 
TCGA-39-5040 TCGA-43-2576 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 
       17.06        40.21        22.49        27.02        33.11        11.47 
TCGA-43-5670 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 
       18.05        24.89        10.19         5.46         3.81         6.97 
TCGA-43-7657 TCGA-43-7658 TCGA-43-8116 TCGA-43-A474 TCGA-43-A475 TCGA-43-A56U 
        7.76        66.51        11.77        11.61         9.73        14.20 
TCGA-43-A56V TCGA-46-3768 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-52-7809 
       12.03         9.99        13.91         0.39         0.39         5.46 
TCGA-52-7810 TCGA-52-7811 TCGA-56-1622 TCGA-56-5897 TCGA-56-5898 TCGA-56-6545 
       30.35         8.75        28.96         0.10        18.25         2.04 
TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 
        0.62         0.99         0.43         0.99         1.45         1.32 
TCGA-56-7822 TCGA-56-8503 TCGA-56-8504 TCGA-56-8622 TCGA-56-8626 TCGA-56-8628 
        0.03         1.35         5.85         1.81         0.56         0.53 
TCGA-56-8629 TCGA-56-A49D TCGA-56-A4BW TCGA-56-A4BX TCGA-56-A4ZJ TCGA-56-A5DR 
        1.12         1.25         0.07         1.51         0.82         0.13 
TCGA-56-A5DS TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 
        0.26        13.25        12.43        29.95        71.24        16.47 
TCGA-58-8393 TCGA-58-A46J TCGA-58-A46K TCGA-58-A46L TCGA-58-A46N TCGA-60-2695 
       34.78        64.87        34.36        36.59        17.75        21.11 
TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 
        3.58        12.23        10.22        96.82        37.94        92.71 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 
       80.45        49.48        66.54        41.42         9.01        56.91 
TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
       50.33        35.34        48.49        42.64         3.19        32.32 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 
       35.90        23.57        26.83        16.96        43.10         2.01 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       21.07         0.99         1.02         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2759 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
        0.99        25.05         2.01         1.02         2.01         2.01 
TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2777 TCGA-66-2778 TCGA-66-2781 
        7.07        23.01        19.00         2.01        19.00         3.98 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 
        1.97        25.97        40.01        22.98         4.04        22.98 
TCGA-66-2791 TCGA-66-2793 TCGA-66-2794 TCGA-66-2800 TCGA-68-7757 TCGA-68-8250 
        5.03        10.06        54.08        49.05         6.94         8.02 
TCGA-68-8251 TCGA-68-A59J TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 
        3.16         3.42        29.56        73.12        75.09        23.28 
TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 
       11.18        89.98        20.78        42.28        70.13       106.95 
TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8008 TCGA-77-8128 TCGA-77-8130 
        0.16        46.78        15.75        86.76        37.81        82.92 
TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8143 TCGA-77-8144 
       53.92        39.09        17.72       104.09        26.40        27.39 
TCGA-77-8145 TCGA-77-8148 TCGA-77-8153 TCGA-77-8154 TCGA-77-8156 TCGA-77-A5FZ 
        6.97         9.63        55.36        35.90         0.33       126.18 
TCGA-77-A5G3 TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6175 TCGA-85-6561 TCGA-85-6798 
      117.57        30.81        23.44         9.67        12.99         1.12 
TCGA-85-7697 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 
        0.33         0.03         1.15         1.25         1.97         0.85 
TCGA-85-8049 TCGA-85-8071 TCGA-85-8276 TCGA-85-8287 TCGA-85-8288 TCGA-85-8350 
        1.97        14.07         0.43         1.45         1.78         1.97 
TCGA-85-8351 TCGA-85-8352 TCGA-85-8353 TCGA-85-8355 TCGA-85-8481 TCGA-85-8580 
        1.81         2.20         1.78         2.01         0.69        14.63 
TCGA-85-8582 TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL TCGA-85-A513 TCGA-85-A53L 
       13.94         0.10        15.62         0.49         0.79         0.43 
TCGA-90-6837 TCGA-90-7766 TCGA-90-7769 TCGA-90-7964 TCGA-90-A4ED TCGA-90-A4EE 
       24.92         9.50        11.77        14.07         8.02        10.88 
TCGA-92-7340 TCGA-92-8063 TCGA-92-8064 TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 
        2.70         4.01         5.26         2.86         0.16        11.70 
TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 TCGA-96-A4JL TCGA-98-7454 TCGA-98-8020 
       44.19         6.21         6.94         6.02         8.42         2.76 
TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 TCGA-L3-A4E7 TCGA-L3-A524 TCGA-LA-A446 
       13.58         7.36        10.13         1.15        14.76         1.18 
TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HI 
        2.73        56.61        37.32 

  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
             0.03              0.03 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
           141.34            173.82 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
           12.195            13.940 
[1] "0.0 - 141.3 (12.2)" "0.0 - 173.8 (13.9)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
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"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
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"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
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  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
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  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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  "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
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  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
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  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
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"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
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  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
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  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D52V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  6Q LOSS MUTATED         0        9       32        0        17        20
  6Q LOSS WILD-TYPE       1       60      104        1        33        50
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  6Q LOSS MUTATED           14          2        1
  6Q LOSS WILD-TYPE         40         18        4
D52V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  6Q LOSS MUTATED    17  61  14   3
  6Q LOSS WILD-TYPE  78 189  31  16
D52V4, multiclass
    clus
vv   6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  T1              17                78
  T2              61               189
  T3              14                31
  T4               3                16
                   vv
clus                 N0  N1  N2  N3
  6Q LOSS MUTATED    54  31   7   1
  6Q LOSS WILD-TYPE 201  78  27   4
D52V5, multiclass
    clus
vv   6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  N0              54               201
  N1              31                78
  N2               7                27
  N3               1                 4
                   vv
clus                 M0  M1  MX
  6Q LOSS MUTATED    83   1  10
  6Q LOSS WILD-TYPE 266   4  39
D52V6, multiclass
    clus
vv   6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  M0              83               266
  M1               1                 4
  MX              10                39
D52V7, binary
                   cls
clus                  0   1
  6Q LOSS MUTATED    24  71
  6Q LOSS WILD-TYPE  80 234
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q LOSS MUTATED     24   71
  6Q LOSS WILD-TYPE   80  234
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  FEMALE              24                80
  MALE                71               234
D52V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  6Q LOSS MUTATED                                       3
  6Q LOSS WILD-TYPE                                     9
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  6Q LOSS MUTATED                                        2
  6Q LOSS WILD-TYPE                                      4
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  6Q LOSS MUTATED                                         0
  6Q LOSS WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  6Q LOSS MUTATED                                                            90
  6Q LOSS WILD-TYPE                                                         300
D52V9, multiclass
                                                             clus
vv                                                            6Q LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     3
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    2
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              90
                                                             clus
vv                                                            6Q LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       9
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      4
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               300
D52V10, binary
                   cls
clus                  0   1
  6Q LOSS MUTATED     3  92
  6Q LOSS WILD-TYPE  10 304
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q LOSS MUTATED      3   92
  6Q LOSS WILD-TYPE   10  304
     clus
vv    6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  NO                3                10
  YES              92               304
D52V11, continuous
D52V12, continuous
                   vv
clus                 R0  R1  R2  RX
  6Q LOSS MUTATED    79   1   1   6
  6Q LOSS WILD-TYPE 253   7   3  12
D52V13, multiclass
    clus
vv   6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  R0              79               253
  R1               1                 7
  R2               1                 3
  RX               6                12

Clustering(53) Variable = 7P LOSS MUTATION ANALYSIS
D53V1, survival
                   sevent
clus2                 0   1
  7P LOSS MUTATED    28  19
  7P LOSS WILD-TYPE 216 120
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
               47               336 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
               19               120 
$`7P LOSS MUTATED`
TCGA-18-3419 TCGA-21-1077 TCGA-21-1083 TCGA-21-5786 TCGA-21-5787 TCGA-21-A5DI 
        1.64        34.78         8.78        33.93        10.82        32.19 
TCGA-22-1016 TCGA-22-1017 TCGA-22-4601 TCGA-22-5492 TCGA-33-6738 TCGA-37-3789 
       27.02        48.82        34.75        16.64        27.02         0.43 
TCGA-37-4133 TCGA-37-5819 TCGA-39-5029 TCGA-39-5036 TCGA-43-2578 TCGA-43-6770 
        7.82         3.39        24.33        35.64        22.49        10.19 
TCGA-46-6026 TCGA-56-1622 TCGA-56-5898 TCGA-56-6546 TCGA-56-7580 TCGA-56-8629 
       13.91        28.96        18.25         0.62         1.32         1.12 
TCGA-58-8386 TCGA-58-8390 TCGA-60-2695 TCGA-60-2703 TCGA-60-2712 TCGA-66-2757 
        0.03        29.95        21.11        96.82         9.01         0.99 
TCGA-66-2773 TCGA-66-2783 TCGA-66-2788 TCGA-66-2792 TCGA-66-2793 TCGA-77-7142 
        3.02        24.95        22.98        30.02        10.06        42.28 
TCGA-77-7337 TCGA-77-8143 TCGA-77-8144 TCGA-77-A5GH TCGA-85-6560 TCGA-85-7699 
      106.95        26.40        27.39        23.44         0.36         0.03 
TCGA-85-8070 TCGA-85-8277 TCGA-85-8353 TCGA-90-7767 TCGA-J1-A4AH 
       16.77         0.36         1.78         2.93         7.30 

$`7P LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.01        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3421 
       11.34        13.02        59.51        28.34        24.92        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.54         3.02        27.19       119.54 
TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1078 TCGA-21-1079 
       46.88        99.16        70.16        60.89        15.58        31.73 
TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 
      122.43         9.34       119.80        31.63        88.11        41.69 
TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 
       19.99         7.33        14.93         4.31        64.21         1.74 
TCGA-22-1012 TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 
       14.10        20.48        35.08        48.33        24.13         0.56 
TCGA-22-4599 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 
       38.17        13.12        32.02        19.30         9.57        11.77 
TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 
       31.73        64.93        63.55        14.63        44.25         0.79 
TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 
       54.28        71.34        79.20        11.74        18.84        30.12 
TCGA-22-5489 TCGA-22-5491 TCGA-22-A5C4 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32         0.95         7.63       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 
       43.10       173.82       103.53       141.34        14.07        54.44 
TCGA-33-4589 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 
       10.82        19.76         2.63        61.61        31.50        28.96 
TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       32.88        31.27        50.24        67.79        56.38         9.07 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       23.24        12.00        14.07        30.94        18.15         4.96 
TCGA-34-7107 TCGA-37-3783 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 
        1.12         3.95         0.39         6.58         8.12         7.46 
TCGA-37-4135 TCGA-37-4141 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 
        6.81         0.39        47.80        74.07        44.75        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5030 TCGA-39-5031 
       55.20        70.03        60.79         1.71         1.94        27.39 
TCGA-39-5034 TCGA-39-5035 TCGA-39-5037 TCGA-39-5039 TCGA-39-5040 TCGA-43-2576 
       36.39        15.58        35.70        17.88        17.06        40.21 
TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 
       38.66        27.02        33.11        11.47        18.05        12.36 
TCGA-43-6647 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 
       24.89         5.46         3.81         6.97         7.76        66.51 
TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 TCGA-43-A474 TCGA-43-A475 TCGA-43-A56U 
       13.38        11.77         2.93        11.61         9.73        14.20 
TCGA-43-A56V TCGA-46-3768 TCGA-46-6025 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 
       12.03         9.99        10.65         0.39         0.39        29.95 
TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 TCGA-56-5897 
       17.79         5.46        30.35         8.75        27.45         0.10 
TCGA-56-6545 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7582 
        2.04         0.99         0.43         0.99         1.45         0.85 
TCGA-56-7730 TCGA-56-7822 TCGA-56-8503 TCGA-56-8504 TCGA-56-8622 TCGA-56-8624 
        0.20         0.03         1.35         5.85         1.81         1.18 
TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 TCGA-56-A49D TCGA-56-A4BW TCGA-56-A4BX 
        2.07         0.56         0.53         1.25         0.07         1.51 
TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DR TCGA-56-A5DS TCGA-58-8387 
        0.99         0.82         0.13         0.13         0.26        13.25 
TCGA-58-8388 TCGA-58-8391 TCGA-58-8392 TCGA-58-8393 TCGA-58-A46J TCGA-58-A46K 
       12.43        71.24        16.47        34.78        64.87        34.36 
TCGA-58-A46L TCGA-58-A46M TCGA-58-A46N TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 
       36.59        23.24        17.75         3.58        12.23        10.22 
TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
       37.94        92.71        21.73        80.45        49.48        66.54 
TCGA-60-2711 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 
       41.42        56.91        50.33        35.34        48.49        42.64 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
        3.19        32.32        29.85        35.90        23.57        26.83 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 
       11.77        16.96        43.10         2.01        21.07         0.99 
TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2758 TCGA-66-2759 
        1.02         2.01         0.92         0.99        21.01        25.05 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 
        0.99         2.01         1.02         2.01         2.01         7.07 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       23.01        19.00         2.01        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2789 TCGA-66-2790 
       12.00         1.97        25.97        40.01         4.04        22.98 
TCGA-66-2791 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 
        5.03        54.08         4.01        49.05         2.73         6.64 
TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 TCGA-68-A59I TCGA-68-A59J TCGA-77-6842 
        6.94         8.02         3.16         3.98         3.42        29.56 
TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 
       73.12        75.09        23.28        11.18        89.98        20.78 
TCGA-77-7141 TCGA-77-7335 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 
        0.49        70.13         0.16        46.78        15.75         6.51 
TCGA-77-8008 TCGA-77-8009 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 
       86.76        53.95        37.81        82.92        12.59        53.92 
TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8145 TCGA-77-8148 
       39.09        17.72       104.09        11.54         6.97         9.63 
TCGA-77-8150 TCGA-77-8153 TCGA-77-8154 TCGA-77-8156 TCGA-77-A5FZ TCGA-77-A5G3 
       54.41        55.36        35.90         0.33       126.18       117.57 
TCGA-77-A5GB TCGA-85-6175 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 
       30.81         9.67        12.99         1.12         0.59         0.33 
TCGA-85-7698 TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 
        1.61         1.15         1.25         1.97         0.85         1.97 
TCGA-85-8052 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8287 TCGA-85-8288 
        0.53        14.07        16.87         0.43         1.45         1.78 
TCGA-85-8350 TCGA-85-8351 TCGA-85-8352 TCGA-85-8354 TCGA-85-8355 TCGA-85-8479 
        1.97         1.81         2.20         2.01         2.01         0.72 
TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL 
        0.69        14.63        13.94         0.10        15.62         0.49 
TCGA-85-A4QR TCGA-85-A50M TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 TCGA-90-7766 
        0.82         0.62         0.79         0.43        24.92         9.50 
TCGA-90-7769 TCGA-90-7964 TCGA-90-A4ED TCGA-90-A4EE TCGA-92-7340 TCGA-92-7341 
       11.77        14.07         8.02        10.88         2.70         3.48 
TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 
        4.01         5.26         2.30         2.86         0.16        11.70 
TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 TCGA-96-A4JK TCGA-96-A4JL 
       39.88        44.19         6.21         6.94         8.98         6.02 
TCGA-98-7454 TCGA-98-8020 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 TCGA-L3-A4E7 
        8.42         2.76        13.58         7.36        10.13         1.15 
TCGA-L3-A524 TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HG TCGA-NC-A5HI 
       14.76         1.18         2.73        56.61        50.89        37.32 

  7P LOSS MUTATED 7P LOSS WILD-TYPE 
             0.03              0.03 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
           106.95            173.82 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
            16.77             13.07 
[1] "0.0 - 107.0 (16.8)" "0.0 - 173.8 (13.1)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED"   "7P LOSS MUTATED"   "7P LOSS MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED"   "7P LOSS MUTATED" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED"   "7P LOSS MUTATED"   "7P LOSS MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED"   "7P LOSS MUTATED" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED"   "7P LOSS MUTATED"   "7P LOSS MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED"   "7P LOSS MUTATED" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
[1] "hr=" "1.4"
D53V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  7P LOSS MUTATED         1        5       14        0         6        10
  7P LOSS WILD-TYPE       0       64      122        1        44        60
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  7P LOSS MUTATED           10          3        1
  7P LOSS WILD-TYPE         44         17        4
D53V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  7P LOSS MUTATED    10  32   4   4
  7P LOSS WILD-TYPE  85 218  41  15
D53V4, multiclass
    clus
vv   7P LOSS MUTATED 7P LOSS WILD-TYPE
  T1              10                85
  T2              32               218
  T3               4                41
  T4               4                15
                   vv
clus                 N0  N1  N2  N3
  7P LOSS MUTATED    28  14   6   1
  7P LOSS WILD-TYPE 227  95  28   4
D53V5, multiclass
    clus
vv   7P LOSS MUTATED 7P LOSS WILD-TYPE
  N0              28               227
  N1              14                95
  N2               6                28
  N3               1                 4
                   vv
clus                 M0  M1  MX
  7P LOSS MUTATED    42   1   6
  7P LOSS WILD-TYPE 307   4  43
D53V6, multiclass
    clus
vv   7P LOSS MUTATED 7P LOSS WILD-TYPE
  M0              42               307
  M1               1                 4
  MX               6                43
D53V7, binary
                   cls
clus                  0   1
  7P LOSS MUTATED     9  41
  7P LOSS WILD-TYPE  95 264
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P LOSS MUTATED      9   41
  7P LOSS WILD-TYPE   95  264
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  FEMALE               9                95
  MALE                41               264
D53V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  7P LOSS MUTATED                                       1
  7P LOSS WILD-TYPE                                    11
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  7P LOSS MUTATED                                        0
  7P LOSS WILD-TYPE                                      6
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  7P LOSS MUTATED                                         0
  7P LOSS WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  7P LOSS MUTATED                                                            49
  7P LOSS WILD-TYPE                                                         341
D53V9, multiclass
                                                             clus
vv                                                            7P LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     1
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    0
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              49
                                                             clus
vv                                                            7P LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      11
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      6
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               341
D53V10, binary
                   cls
clus                  0   1
  7P LOSS MUTATED     2  48
  7P LOSS WILD-TYPE  11 348
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P LOSS MUTATED      2   48
  7P LOSS WILD-TYPE   11  348
     clus
vv    7P LOSS MUTATED 7P LOSS WILD-TYPE
  NO                2                11
  YES              48               348
D53V11, continuous
D53V12, continuous
                   vv
clus                 R0  R1  R2  RX
  7P LOSS MUTATED    45   0   2   1
  7P LOSS WILD-TYPE 287   8   2  17
D53V13, multiclass
    clus
vv   7P LOSS MUTATED 7P LOSS WILD-TYPE
  R0              45               287
  R1               0                 8
  R2               2                 2
  RX               1                17

Clustering(54) Variable = 7Q LOSS MUTATION ANALYSIS
D54V1, survival
                   sevent
clus2                 0   1
  7Q LOSS MUTATED    26  16
  7Q LOSS WILD-TYPE 218 123
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
               42               341 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
               16               123 
$`7Q LOSS MUTATED`
TCGA-18-3419 TCGA-21-1082 TCGA-21-1083 TCGA-21-5786 TCGA-22-1016 TCGA-22-1017 
        1.64       119.80         8.78        33.93        27.02        48.82 
TCGA-22-5481 TCGA-37-3789 TCGA-37-5819 TCGA-39-5029 TCGA-43-2578 TCGA-43-2581 
       79.20         0.43         3.39        24.33        22.49        38.66 
TCGA-43-6770 TCGA-43-6771 TCGA-46-6026 TCGA-56-1622 TCGA-56-6546 TCGA-56-7580 
       10.19         5.46        13.91        28.96         0.62         1.32 
TCGA-56-8629 TCGA-56-A4BW TCGA-60-2695 TCGA-60-2703 TCGA-60-2712 TCGA-66-2754 
        1.12         0.07        21.11        96.82         9.01         2.01 
TCGA-66-2773 TCGA-66-2788 TCGA-66-2793 TCGA-77-7138 TCGA-77-8136 TCGA-77-8139 
        3.02        22.98        10.06        11.18        39.09       104.09 
TCGA-77-8144 TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6560 TCGA-85-7699 TCGA-85-8048 
       27.39        30.81        23.44         0.36         0.03         0.85 
TCGA-85-8353 TCGA-85-A513 TCGA-85-A53L TCGA-90-7767 TCGA-98-8022 TCGA-J1-A4AH 
        1.78         0.79         0.43         2.93         7.36         7.30 

$`7Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.01        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3421 
       11.34        13.02        59.51        28.34        24.92        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.54         3.02        27.19       119.54 
TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 
       46.88        99.16        70.16        60.89        34.78        15.58 
TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 
       31.73       122.43         9.34        31.63        88.11        41.69 
TCGA-21-5787 TCGA-21-A5DI TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 
       10.82        32.19        19.99         7.33        14.93         4.31 
TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 
       64.21         1.74        14.10        20.48        35.08        48.33 
TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 
       24.13         0.56        38.17        34.75        13.12        32.02 
TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       19.30         9.57        11.77        31.73        64.93        63.55 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5482 
       14.63        44.25         0.79        54.28        71.34        11.74 
TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-22-A5C4 
       18.84        30.12        62.86        56.32        16.64         0.95 
TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 
        7.63       114.05        97.94        43.10       173.82       103.53 
TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 
      141.34        14.07        54.44        10.82        19.76        27.02 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 
        2.63        61.61        31.50        28.96        32.88        31.27 
TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 
       50.24        67.79        56.38         9.07        23.24        12.00 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 
       14.07        30.94        18.15         4.96         1.12         3.95 
TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 
        0.39         6.58         8.12         7.46         7.82         6.81 
TCGA-37-4141 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 
        0.39        47.80        74.07        44.75        68.58        55.20 
TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 
       70.03        60.79         1.71         1.94        27.39        36.39 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-39-5040 TCGA-43-2576 
       15.58        35.64        35.70        17.88        17.06        40.21 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 
       27.02        33.11        11.47        18.05        12.36        24.89 
TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 
        3.81         6.97         7.76        66.51        13.38        11.77 
TCGA-43-8118 TCGA-43-A474 TCGA-43-A475 TCGA-43-A56U TCGA-43-A56V TCGA-46-3768 
        2.93        11.61         9.73        14.20        12.03         9.99 
TCGA-46-6025 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 
       10.65         0.39         0.39        29.95        17.79         5.46 
TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 TCGA-56-5897 TCGA-56-5898 TCGA-56-6545 
       30.35         8.75        27.45         0.10        18.25         2.04 
TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7582 TCGA-56-7730 
        0.99         0.43         0.99         1.45         0.85         0.20 
TCGA-56-7822 TCGA-56-8503 TCGA-56-8504 TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 
        0.03         1.35         5.85         1.81         1.18         2.07 
TCGA-56-8626 TCGA-56-8628 TCGA-56-A49D TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A4ZJ 
        0.56         0.53         1.25         1.51         0.99         0.82 
TCGA-56-A4ZK TCGA-56-A5DR TCGA-56-A5DS TCGA-58-8386 TCGA-58-8387 TCGA-58-8388 
        0.13         0.13         0.26         0.03        13.25        12.43 
TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 TCGA-58-8393 TCGA-58-A46J TCGA-58-A46K 
       29.95        71.24        16.47        34.78        64.87        34.36 
TCGA-58-A46L TCGA-58-A46M TCGA-58-A46N TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 
       36.59        23.24        17.75         3.58        12.23        10.22 
TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
       37.94        92.71        21.73        80.45        49.48        66.54 
TCGA-60-2711 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 
       41.42        56.91        50.33        35.34        48.49        42.64 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
        3.19        32.32        29.85        35.90        23.57        26.83 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 
       11.77        16.96        43.10         2.01        21.07         0.99 
TCGA-66-2753 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 
        1.02         0.92         0.99         0.99        21.01        25.05 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 
        0.99         2.01         1.02         2.01         2.01         7.07 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       23.01        19.00         2.01        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2789 
       12.00        24.95         1.97        25.97        40.01         4.04 
TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
       22.98         5.03        30.02        54.08         4.01        49.05 
TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 TCGA-68-A59I 
        2.73         6.64         6.94         8.02         3.16         3.98 
TCGA-68-A59J TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7139 
        3.42        29.56        73.12        75.09        23.28        89.98 
TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 
       20.78         0.49        42.28        70.13       106.95         0.16 
TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 TCGA-77-8128 
       46.78        15.75         6.51        86.76        53.95        37.81 
TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8138 TCGA-77-8140 TCGA-77-8143 
       82.92        12.59        53.92        17.72        11.54        26.40 
TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-77-8153 TCGA-77-8154 TCGA-77-8156 
        6.97         9.63        54.41        55.36        35.90         0.33 
TCGA-77-A5FZ TCGA-77-A5G3 TCGA-85-6175 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 
      126.18       117.57         9.67        12.99         1.12         0.59 
TCGA-85-7697 TCGA-85-7698 TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 TCGA-85-8049 
        0.33         1.61         1.15         1.25         1.97         1.97 
TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 
        0.53        16.77        14.07        16.87         0.43         0.36 
TCGA-85-8287 TCGA-85-8288 TCGA-85-8350 TCGA-85-8351 TCGA-85-8352 TCGA-85-8354 
        1.45         1.78         1.97         1.81         2.20         2.01 
TCGA-85-8355 TCGA-85-8479 TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 
        2.01         0.72         0.69        14.63        13.94         0.10 
TCGA-85-8666 TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A50M TCGA-90-6837 TCGA-90-7766 
       15.62         0.49         0.82         0.62        24.92         9.50 
TCGA-90-7769 TCGA-90-7964 TCGA-90-A4ED TCGA-90-A4EE TCGA-92-7340 TCGA-92-7341 
       11.77        14.07         8.02        10.88         2.70         3.48 
TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 
        4.01         5.26         2.30         2.86         0.16        11.70 
TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 TCGA-96-A4JK TCGA-96-A4JL 
       39.88        44.19         6.21         6.94         8.98         6.02 
TCGA-98-7454 TCGA-98-8020 TCGA-98-8021 TCGA-98-8023 TCGA-L3-A4E7 TCGA-L3-A524 
        8.42         2.76        13.58        10.13         1.15        14.76 
TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HG TCGA-NC-A5HI 
        1.18         2.73        56.61        50.89        37.32 

  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
             0.03              0.03 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
           119.80            173.82 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
            9.535            14.070 
[1] "0.0 - 119.8 (9.5)"  "0.0 - 173.8 (14.1)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "7Q LOSS MUTATED"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED"   "7Q LOSS MUTATED" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED"   "7Q LOSS MUTATED" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "7Q LOSS MUTATED"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED"   "7Q LOSS MUTATED" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED"   "7Q LOSS MUTATED" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "7Q LOSS MUTATED"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED"   "7Q LOSS MUTATED" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED"   "7Q LOSS MUTATED" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D54V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  7Q LOSS MUTATED         0        7       15        0         6        10
  7Q LOSS WILD-TYPE       1       62      121        1        44        60
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  7Q LOSS MUTATED            6          1        0
  7Q LOSS WILD-TYPE         48         19        5
D54V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  7Q LOSS MUTATED     9  30   4   2
  7Q LOSS WILD-TYPE  86 220  41  17
D54V4, multiclass
    clus
vv   7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  T1               9                86
  T2              30               220
  T3               4                41
  T4               2                17
                   vv
clus                 N0  N1  N2  N3
  7Q LOSS MUTATED    27  13   3   0
  7Q LOSS WILD-TYPE 228  96  31   5
D54V5, multiclass
    clus
vv   7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  N0              27               228
  N1              13                96
  N2               3                31
  N3               0                 5
                   vv
clus                 M0  M1  MX
  7Q LOSS MUTATED    38   0   6
  7Q LOSS WILD-TYPE 311   5  43
D54V6, multiclass
    clus
vv   7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  M0              38               311
  M1               0                 5
  MX               6                43
D54V7, binary
                   cls
clus                  0   1
  7Q LOSS MUTATED    10  35
  7Q LOSS WILD-TYPE  94 270
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q LOSS MUTATED     10   35
  7Q LOSS WILD-TYPE   94  270
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  FEMALE              10                94
  MALE                35               270
D54V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  7Q LOSS MUTATED                                       1
  7Q LOSS WILD-TYPE                                    11
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  7Q LOSS MUTATED                                        0
  7Q LOSS WILD-TYPE                                      6
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  7Q LOSS MUTATED                                         0
  7Q LOSS WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  7Q LOSS MUTATED                                                            44
  7Q LOSS WILD-TYPE                                                         346
D54V9, multiclass
                                                             clus
vv                                                            7Q LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     1
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    0
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              44
                                                             clus
vv                                                            7Q LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      11
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      6
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               346
D54V10, binary
                   cls
clus                  0   1
  7Q LOSS MUTATED     1  44
  7Q LOSS WILD-TYPE  12 352
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q LOSS MUTATED      1   44
  7Q LOSS WILD-TYPE   12  352
     clus
vv    7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  NO                1                12
  YES              44               352
D54V11, continuous
D54V12, continuous
                   vv
clus                 R0  R1  R2  RX
  7Q LOSS MUTATED    41   0   1   2
  7Q LOSS WILD-TYPE 291   8   3  16
D54V13, multiclass
    clus
vv   7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  R0              41               291
  R1               0                 8
  R2               1                 3
  RX               2                16

Clustering(55) Variable = 8P LOSS MUTATION ANALYSIS
D55V1, survival
                   sevent
clus2                 0   1
  8P LOSS MUTATED   116  68
  8P LOSS WILD-TYPE 128  71
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
              184               199 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               68                71 
$`8P LOSS MUTATED`
TCGA-18-3406 TCGA-18-3412 TCGA-18-3415 TCGA-18-3419 TCGA-18-4083 TCGA-18-4721 
       12.16        11.34        59.51         1.64         6.15        90.54 
TCGA-18-5592 TCGA-18-5595 TCGA-21-1072 TCGA-21-1076 TCGA-21-1080 TCGA-21-1083 
        3.02        27.19        99.16        60.89       122.43         8.78 
TCGA-21-5782 TCGA-21-5786 TCGA-21-5787 TCGA-22-1000 TCGA-22-1002 TCGA-22-1016 
       31.63        33.93        10.82        14.93         4.31        27.02 
TCGA-22-1017 TCGA-22-4591 TCGA-22-4594 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 
       48.82        20.48        48.33        38.17        34.75        13.12 
TCGA-22-4605 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5477 TCGA-22-5478 
       32.02         9.57        11.77        31.73        44.25         0.79 
TCGA-22-5480 TCGA-22-5481 TCGA-22-5483 TCGA-22-5485 TCGA-22-5491 TCGA-22-5492 
       71.34        79.20        18.84        30.12        56.32        16.64 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4586 TCGA-33-4589 TCGA-33-6738 
       43.10       173.82       103.53        14.07        10.82        27.02 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2609 TCGA-34-5236 TCGA-34-5241 TCGA-34-5928 
        2.63        61.61        31.27         9.07        14.07        18.15 
TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4135 TCGA-37-4141 TCGA-39-5011 
        3.95         0.43         0.39         6.81         0.39        47.80 
TCGA-39-5021 TCGA-39-5027 TCGA-39-5031 TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 
       68.58        60.79        27.39        35.70        17.88        40.21 
TCGA-43-2581 TCGA-43-5668 TCGA-43-6770 TCGA-43-6771 TCGA-43-7657 TCGA-43-8115 
       38.66        11.47        10.19         5.46         7.76        13.38 
TCGA-43-8116 TCGA-43-8118 TCGA-43-A474 TCGA-46-3768 TCGA-46-6025 TCGA-51-4080 
       11.77         2.93        11.61         9.99        10.65         0.39 
TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 TCGA-52-7812 TCGA-56-1622 
       29.95        17.79         5.46        30.35        27.45        28.96 
TCGA-56-5897 TCGA-56-5898 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 
        0.10        18.25         0.43         0.99         1.45         1.32 
TCGA-56-8504 TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 TCGA-56-A4BW TCGA-56-A4BX 
        5.85         0.56         0.53         1.12         0.07         1.51 
TCGA-56-A4BY TCGA-56-A5DS TCGA-58-8390 TCGA-58-8392 TCGA-58-8393 TCGA-58-A46K 
        0.99         0.26        29.95        16.47        34.78        34.36 
TCGA-58-A46L TCGA-58-A46M TCGA-60-2698 TCGA-60-2703 TCGA-60-2711 TCGA-60-2713 
       36.59        23.24        10.22        96.82        41.42        56.91 
TCGA-60-2721 TCGA-60-2723 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 
       32.32        35.90        11.77        16.96        43.10         2.01 
TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2757 TCGA-66-2759 TCGA-66-2766 
        1.02         2.01         0.92         0.99        25.05         1.02 
TCGA-66-2768 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
        2.01        12.03         3.98        12.00        24.95         1.97 
TCGA-66-2787 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2795 TCGA-68-7755 
       40.01        22.98         5.03        30.02         4.01         2.73 
TCGA-68-8250 TCGA-68-A59I TCGA-68-A59J TCGA-77-6842 TCGA-77-6844 TCGA-77-6845 
        8.02         3.98         3.42        29.56        75.09        23.28 
TCGA-77-7138 TCGA-77-7337 TCGA-77-7338 TCGA-77-7465 TCGA-77-8008 TCGA-77-8009 
       11.18       106.95         0.16        15.75        86.76        53.95 
TCGA-77-8128 TCGA-77-8130 TCGA-77-8139 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 
       37.81        82.92       104.09        27.39         6.97         9.63 
TCGA-77-8154 TCGA-77-A5G3 TCGA-85-6175 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 
       35.90       117.57         9.67        12.99         1.12         0.59 
TCGA-85-7697 TCGA-85-7698 TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 
        0.33         1.61         1.15         1.25         1.97         0.85 
TCGA-85-8070 TCGA-85-8276 TCGA-85-8277 TCGA-85-8350 TCGA-85-8352 TCGA-85-8353 
       16.77         0.43         0.36         1.97         2.20         1.78 
TCGA-85-8354 TCGA-85-A4QR TCGA-85-A50M TCGA-85-A53L TCGA-90-7766 TCGA-90-7767 
        2.01         0.82         0.62         0.43         9.50         2.93 
TCGA-90-A4ED TCGA-92-7341 TCGA-92-8063 TCGA-94-7557 TCGA-96-7544 TCGA-96-8170 
        8.02         3.48         4.01         0.16        39.88         6.94 
TCGA-96-A4JK TCGA-98-8020 TCGA-98-8021 TCGA-98-8022 TCGA-J1-A4AH TCGA-LA-A446 
        8.98         2.76        13.58         7.36         7.30         1.18 
TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HG TCGA-NC-A5HI 
        2.73        56.61        50.89        37.32 

$`8P LOSS WILD-TYPE`
TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 TCGA-18-3414 
        4.47        81.01        79.46         4.80        46.52        13.02 
TCGA-18-3416 TCGA-18-3417 TCGA-18-3421 TCGA-18-4086 TCGA-21-1070 TCGA-21-1071 
       28.34        24.92        43.76         2.79       119.54        46.88 
TCGA-21-1075 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 TCGA-21-1081 TCGA-21-1082 
       70.16        34.78        15.58        31.73         9.34       119.80 
TCGA-21-5783 TCGA-21-5784 TCGA-21-A5DI TCGA-22-0940 TCGA-22-0944 TCGA-22-1005 
       88.11        41.69        32.19        19.99         7.33        64.21 
TCGA-22-1011 TCGA-22-1012 TCGA-22-4593 TCGA-22-4595 TCGA-22-4596 TCGA-22-4607 
        1.74        14.10        35.08        24.13         0.56        19.30 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5479 TCGA-22-5482 TCGA-22-5489 
       64.93        63.55        14.63        54.28        11.74        62.86 
TCGA-22-A5C4 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4583 TCGA-33-4587 
        0.95         7.63       114.05        97.94       141.34        54.44 
TCGA-33-6737 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 
       19.76        31.50        28.96        32.88        50.24        67.79 
TCGA-34-5234 TCGA-34-5239 TCGA-34-5240 TCGA-34-5927 TCGA-34-5929 TCGA-34-7107 
       56.38        23.24        12.00        30.94         4.96         1.12 
TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-5819 TCGA-39-5016 
        6.58         8.12         7.46         7.82         3.39        74.07 
TCGA-39-5019 TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
       44.75        55.20        70.03         1.71        24.33         1.94 
TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5040 TCGA-43-2578 TCGA-43-3394 
       36.39        15.58        35.64        17.06        22.49        27.02 
TCGA-43-3920 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 TCGA-43-6773 TCGA-43-7656 
       33.11        18.05        12.36        24.89         3.81         6.97 
TCGA-43-7658 TCGA-43-A475 TCGA-43-A56U TCGA-43-A56V TCGA-46-6026 TCGA-51-4079 
       66.51         9.73        14.20        12.03        13.91         0.39 
TCGA-52-7811 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7582 TCGA-56-7730 
        8.75         2.04         0.62         0.99         0.85         0.20 
TCGA-56-7822 TCGA-56-8503 TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 TCGA-56-A49D 
        0.03         1.35         1.81         1.18         2.07         1.25 
TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DR TCGA-58-8386 TCGA-58-8387 TCGA-58-8388 
        0.82         0.13         0.13         0.03        13.25        12.43 
TCGA-58-8391 TCGA-58-A46J TCGA-58-A46N TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 
       71.24        64.87        17.75        21.11         3.58        12.23 
TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
       37.94        92.71        21.73        80.45        49.48        66.54 
TCGA-60-2712 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 
        9.01        50.33        35.34        48.49        42.64         3.19 
TCGA-60-2722 TCGA-60-2724 TCGA-60-2725 TCGA-66-2742 TCGA-66-2744 TCGA-66-2756 
       29.85        23.57        26.83        21.07         0.99         0.99 
TCGA-66-2758 TCGA-66-2763 TCGA-66-2765 TCGA-66-2767 TCGA-66-2769 TCGA-66-2770 
       21.01         0.99         2.01         2.01         7.07        23.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2786 TCGA-66-2788 
       19.00         3.02         2.01        19.00        25.97        22.98 
TCGA-66-2789 TCGA-66-2793 TCGA-66-2794 TCGA-66-2800 TCGA-68-7756 TCGA-68-7757 
        4.04        10.06        54.08        49.05         6.64         6.94 
TCGA-68-8251 TCGA-77-6843 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 
        3.16        73.12        89.98        20.78         0.49        42.28 
TCGA-77-7335 TCGA-77-7463 TCGA-77-8007 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 
       70.13        46.78         6.51        12.59        53.92        39.09 
TCGA-77-8138 TCGA-77-8140 TCGA-77-8143 TCGA-77-8150 TCGA-77-8153 TCGA-77-8156 
       17.72        11.54        26.40        54.41        55.36         0.33 
TCGA-77-A5FZ TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6560 TCGA-85-7699 TCGA-85-8049 
      126.18        30.81        23.44         0.36         0.03         1.97 
TCGA-85-8052 TCGA-85-8071 TCGA-85-8072 TCGA-85-8287 TCGA-85-8288 TCGA-85-8351 
        0.53        14.07        16.87         1.45         1.78         1.81 
TCGA-85-8355 TCGA-85-8479 TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 
        2.01         0.72         0.69        14.63        13.94         0.10 
TCGA-85-8666 TCGA-85-A4CL TCGA-85-A513 TCGA-90-6837 TCGA-90-7769 TCGA-90-7964 
       15.62         0.49         0.79        24.92        11.77        14.07 
TCGA-90-A4EE TCGA-92-7340 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7943 
       10.88         2.70         5.26         2.30         2.86        11.70 
TCGA-96-7545 TCGA-96-8169 TCGA-96-A4JL TCGA-98-7454 TCGA-98-8023 TCGA-L3-A4E7 
       44.19         6.21         6.02         8.42        10.13         1.15 
TCGA-L3-A524 
       14.76 

  8P LOSS MUTATED 8P LOSS WILD-TYPE 
             0.07              0.03 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
           173.82            141.34 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
            11.77             14.63 
[1] "0.1 - 173.8 (11.8)" "0.0 - 141.3 (14.6)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
[1] "hr=" "1.1"
D55V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  8P LOSS MUTATED         0       37       61        0        26        36
  8P LOSS WILD-TYPE       1       32       75        1        24        34
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  8P LOSS MUTATED           30          7        0
  8P LOSS WILD-TYPE         24         13        5
D55V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  8P LOSS MUTATED    46 121  26   5
  8P LOSS WILD-TYPE  49 129  19  14
D55V4, multiclass
    clus
vv   8P LOSS MUTATED 8P LOSS WILD-TYPE
  T1              46                49
  T2             121               129
  T3              26                19
  T4               5                14
                   vv
clus                 N0  N1  N2  N3
  8P LOSS MUTATED   121  56  18   2
  8P LOSS WILD-TYPE 134  53  16   3
D55V5, multiclass
    clus
vv   8P LOSS MUTATED 8P LOSS WILD-TYPE
  N0             121               134
  N1              56                53
  N2              18                16
  N3               2                 3
                   vv
clus                 M0  M1  MX
  8P LOSS MUTATED   170   0  25
  8P LOSS WILD-TYPE 179   5  24
D55V6, multiclass
    clus
vv   8P LOSS MUTATED 8P LOSS WILD-TYPE
  M0             170               179
  M1               0                 5
  MX              25                24
D55V7, binary
                   cls
clus                  0   1
  8P LOSS MUTATED    45 153
  8P LOSS WILD-TYPE  59 152
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P LOSS MUTATED     45  153
  8P LOSS WILD-TYPE   59  152
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  FEMALE              45                59
  MALE               153               152
D55V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  8P LOSS MUTATED                                       5
  8P LOSS WILD-TYPE                                     7
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  8P LOSS MUTATED                                        1
  8P LOSS WILD-TYPE                                      5
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  8P LOSS MUTATED                                         0
  8P LOSS WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  8P LOSS MUTATED                                                           192
  8P LOSS WILD-TYPE                                                         198
D55V9, multiclass
                                                             clus
vv                                                            8P LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     5
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             192
                                                             clus
vv                                                            8P LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       7
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               198
D55V10, binary
                   cls
clus                  0   1
  8P LOSS MUTATED     7 191
  8P LOSS WILD-TYPE   6 205
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P LOSS MUTATED      7  191
  8P LOSS WILD-TYPE    6  205
     clus
vv    8P LOSS MUTATED 8P LOSS WILD-TYPE
  NO                7                 6
  YES             191               205
D55V11, continuous
D55V12, continuous
                   vv
clus                 R0  R1  R2  RX
  8P LOSS MUTATED   162   4   2   8
  8P LOSS WILD-TYPE 170   4   2  10
D55V13, multiclass
    clus
vv   8P LOSS MUTATED 8P LOSS WILD-TYPE
  R0             162               170
  R1               4                 4
  R2               2                 2
  RX               8                10

Clustering(56) Variable = 8Q LOSS MUTATION ANALYSIS
D56V1, survival
                   sevent
clus2                 0   1
  8Q LOSS MUTATED    26   8
  8Q LOSS WILD-TYPE 218 131
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
               34               349 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
                8               131 
$`8Q LOSS MUTATED`
TCGA-21-1072 TCGA-22-5483 TCGA-33-4586 TCGA-33-6738 TCGA-37-3792 TCGA-37-4135 
       99.16        18.84        14.07        27.02         0.39         6.81 
TCGA-37-4141 TCGA-39-5011 TCGA-39-5037 TCGA-43-6771 TCGA-46-6025 TCGA-52-7622 
        0.39        47.80        35.70         5.46        10.65        17.79 
TCGA-52-7809 TCGA-56-7730 TCGA-56-8629 TCGA-56-A4BW TCGA-58-A46K TCGA-66-2727 
        5.46         0.20         1.12         0.07        34.36        16.96 
TCGA-66-2766 TCGA-66-2791 TCGA-77-8144 TCGA-77-8154 TCGA-85-6561 TCGA-85-7844 
        1.02         5.03        27.39        35.90        12.99         1.25 
TCGA-85-8276 TCGA-85-8277 TCGA-85-8352 TCGA-85-A50M TCGA-85-A53L TCGA-90-7766 
        0.43         0.36         2.20         0.62         0.43         9.50 
TCGA-90-A4ED TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HI 
        8.02         2.73        56.61        37.32 

$`8Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.01        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.64 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.54         3.02        27.19 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 
      119.54        46.88        70.16        60.89        34.78        15.58 
TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 
       31.73       122.43         9.34       119.80         8.78        31.63 
TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-21-A5DI TCGA-22-0940 
       88.11        41.69        33.93        10.82        32.19        19.99 
TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 
        7.33        14.93         4.31        64.21         1.74        14.10 
TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 
       27.02        48.82        20.48        35.08        48.33        24.13 
TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 
        0.56        38.17        34.75        13.12        32.02        19.30 
TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
        9.57        11.77        31.73        64.93        63.55        14.63 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 
       44.25         0.79        54.28        71.34        79.20        11.74 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-22-A5C4 TCGA-33-4532 
       30.12        62.86        56.32        16.64         0.95         7.63 
TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 
      114.05        97.94        43.10       173.82       103.53       141.34 
TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 
       54.44        10.82        19.76         2.63        61.61        31.50 
TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
       28.96        32.88        31.27        50.24        67.79        56.38 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.07        23.24        12.00        14.07        30.94        18.15 
TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-4129 TCGA-37-4130 
        4.96         1.12         3.95         0.43         6.58         8.12 
TCGA-37-4132 TCGA-37-4133 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 
        7.46         7.82         3.39        74.07        44.75        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
       55.20        70.03        60.79         1.71        24.33         1.94 
TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5039 TCGA-39-5040 
       27.39        36.39        15.58        35.64        17.88        17.06 
TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 
       40.21        22.49        38.66        27.02        33.11        11.47 
TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6773 TCGA-43-7656 
       18.05        12.36        24.89        10.19         3.81         6.97 
TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 TCGA-43-A474 
        7.76        66.51        13.38        11.77         2.93        11.61 
TCGA-43-A475 TCGA-43-A56U TCGA-43-A56V TCGA-46-3768 TCGA-46-6026 TCGA-51-4079 
        9.73        14.20        12.03         9.99        13.91         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 
        0.39        29.95        30.35         8.75        27.45        28.96 
TCGA-56-5897 TCGA-56-5898 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 
        0.10        18.25         2.04         0.62         0.99         0.43 
TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-56-7822 TCGA-56-8503 
        0.99         1.45         1.32         0.85         0.03         1.35 
TCGA-56-8504 TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 
        5.85         1.81         1.18         2.07         0.56         0.53 
TCGA-56-A49D TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DR 
        1.25         1.51         0.99         0.82         0.13         0.13 
TCGA-56-A5DS TCGA-58-8386 TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 
        0.26         0.03        13.25        12.43        29.95        71.24 
TCGA-58-8392 TCGA-58-8393 TCGA-58-A46J TCGA-58-A46L TCGA-58-A46M TCGA-58-A46N 
       16.47        34.78        64.87        36.59        23.24        17.75 
TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 
       21.11         3.58        12.23        10.22        96.82        37.94 
TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       92.71        21.73        80.45        49.48        66.54        41.42 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 
        9.01        56.91        50.33        35.34        48.49        42.64 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
        3.19        32.32        29.85        35.90        23.57        26.83 
TCGA-60-2726 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 
       11.77        43.10         2.01        21.07         0.99         1.02 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 
        2.01         0.92         0.99         0.99        21.01        25.05 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 
        0.99         2.01         2.01         2.01         7.07        23.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       19.00         3.02         2.01        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
       12.00        24.95         1.97        25.97        40.01        22.98 
TCGA-66-2789 TCGA-66-2790 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
        4.04        22.98        30.02        10.06        54.08         4.01 
TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 
       49.05         2.73         6.64         6.94         8.02         3.16 
TCGA-68-A59I TCGA-68-A59J TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 
        3.98         3.42        29.56        73.12        75.09        23.28 
TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 
       11.18        89.98        20.78         0.49        42.28        70.13 
TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 TCGA-77-8008 
      106.95         0.16        46.78        15.75         6.51        86.76 
TCGA-77-8009 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 
       53.95        37.81        82.92        12.59        53.92        39.09 
TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 TCGA-77-8145 TCGA-77-8148 
       17.72       104.09        11.54        26.40         6.97         9.63 
TCGA-77-8150 TCGA-77-8153 TCGA-77-8156 TCGA-77-A5FZ TCGA-77-A5G3 TCGA-77-A5GB 
       54.41        55.36         0.33       126.18       117.57        30.81 
TCGA-77-A5GH TCGA-85-6175 TCGA-85-6560 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 
       23.44         9.67         0.36         1.12         0.59         0.33 
TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 
        1.61         0.03         1.15         1.97         0.85         1.97 
TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-85-8287 TCGA-85-8288 
        0.53        16.77        14.07        16.87         1.45         1.78 
TCGA-85-8350 TCGA-85-8351 TCGA-85-8353 TCGA-85-8354 TCGA-85-8355 TCGA-85-8479 
        1.97         1.81         1.78         2.01         2.01         0.72 
TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL 
        0.69        14.63        13.94         0.10        15.62         0.49 
TCGA-85-A4QR TCGA-85-A513 TCGA-90-6837 TCGA-90-7767 TCGA-90-7769 TCGA-90-7964 
        0.82         0.79        24.92         2.93        11.77        14.07 
TCGA-90-A4EE TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 
       10.88         2.70         3.48         4.01         5.26         2.30 
TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 
        2.86         0.16        11.70        39.88        44.19         6.21 
TCGA-96-8170 TCGA-96-A4JK TCGA-96-A4JL TCGA-98-7454 TCGA-98-8020 TCGA-98-8021 
        6.94         8.98         6.02         8.42         2.76        13.58 
TCGA-98-8022 TCGA-98-8023 TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-L3-A524 TCGA-LA-A446 
        7.36        10.13         7.30         1.15        14.76         1.18 
TCGA-NC-A5HG 
       50.89 

  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
             0.07              0.03 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
            99.16            173.82 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
            7.415            14.070 
[1] "0.1 - 99.2 (7.4)"   "0.0 - 173.8 (14.1)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
  "8Q LOSS MUTATED"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
  "8Q LOSS MUTATED"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
  "8Q LOSS MUTATED"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
[1] "hr=" "1"  
D56V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  8Q LOSS MUTATED         0        5       11        0         9         4
  8Q LOSS WILD-TYPE       1       64      125        1        41        66
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  8Q LOSS MUTATED            6          2        0
  8Q LOSS WILD-TYPE         48         18        5
D56V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  8Q LOSS MUTATED     9  25   3   0
  8Q LOSS WILD-TYPE  86 225  42  19
D56V4, multiclass
    clus
vv   8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  T1               9                86
  T2              25               225
  T3               3                42
  T4               0                19
                   vv
clus                 N0  N1  N2  N3
  8Q LOSS MUTATED    21  10   4   1
  8Q LOSS WILD-TYPE 234  99  30   4
D56V5, multiclass
    clus
vv   8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  N0              21               234
  N1              10                99
  N2               4                30
  N3               1                 4
                   vv
clus                 M0  M1  MX
  8Q LOSS MUTATED    31   0   6
  8Q LOSS WILD-TYPE 318   5  43
D56V6, multiclass
    clus
vv   8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  M0              31               318
  M1               0                 5
  MX               6                43
D56V7, binary
                   cls
clus                  0   1
  8Q LOSS MUTATED     7  30
  8Q LOSS WILD-TYPE  97 275
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q LOSS MUTATED      7   30
  8Q LOSS WILD-TYPE   97  275
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  FEMALE               7                97
  MALE                30               275
D56V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  8Q LOSS MUTATED                                       2
  8Q LOSS WILD-TYPE                                    10
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  8Q LOSS MUTATED                                        1
  8Q LOSS WILD-TYPE                                      5
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  8Q LOSS MUTATED                                         0
  8Q LOSS WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  8Q LOSS MUTATED                                                            34
  8Q LOSS WILD-TYPE                                                         356
D56V9, multiclass
                                                             clus
vv                                                            8Q LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     2
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              34
                                                             clus
vv                                                            8Q LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      10
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               356
D56V10, binary
                   cls
clus                  0   1
  8Q LOSS MUTATED     1  36
  8Q LOSS WILD-TYPE  12 360
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q LOSS MUTATED      1   36
  8Q LOSS WILD-TYPE   12  360
     clus
vv    8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  NO                1                12
  YES              36               360
D56V11, continuous
D56V12, continuous
                   vv
clus                 R0  R1  R2  RX
  8Q LOSS MUTATED    29   1   0   2
  8Q LOSS WILD-TYPE 303   7   4  16
D56V13, multiclass
    clus
vv   8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  R0              29               303
  R1               1                 7
  R2               0                 4
  RX               2                16

Clustering(57) Variable = 9P LOSS MUTATION ANALYSIS
D57V1, survival
                   sevent
clus2                 0   1
  9P LOSS MUTATED   155  82
  9P LOSS WILD-TYPE  89  57
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
              237               146 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
               82                57 
$`9P LOSS MUTATED`
TCGA-18-3406 TCGA-18-3409 TCGA-18-3411 TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 
       12.16        79.46        46.52        11.34        13.02        59.51 
TCGA-18-3417 TCGA-18-3419 TCGA-18-4083 TCGA-18-4086 TCGA-18-5592 TCGA-21-1070 
       24.92         1.64         6.15         2.79         3.02       119.54 
TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1077 TCGA-21-1080 TCGA-21-1082 
       46.88        99.16        70.16        34.78       122.43       119.80 
TCGA-21-1083 TCGA-21-5783 TCGA-21-5786 TCGA-21-5787 TCGA-21-A5DI TCGA-22-1002 
        8.78        88.11        33.93        10.82        32.19         4.31 
TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 
       64.21         1.74        14.10        27.02        20.48        35.08 
TCGA-22-4594 TCGA-22-4599 TCGA-22-4601 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 
       48.33        38.17        34.75        19.30         9.57        11.77 
TCGA-22-5471 TCGA-22-5472 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5482 
       31.73        64.93        14.63        44.25         0.79        11.74 
TCGA-22-5483 TCGA-22-5485 TCGA-22-5491 TCGA-22-A5C4 TCGA-33-4538 TCGA-33-4547 
       18.84        30.12        56.32         0.95        97.94        43.10 
TCGA-33-4582 TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 
      103.53        19.76        27.02         2.63        61.61        31.50 
TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5241 
       28.96        32.88        31.27        50.24        67.79        14.07 
TCGA-34-5927 TCGA-34-5929 TCGA-37-3789 TCGA-37-4130 TCGA-37-4135 TCGA-37-4141 
       30.94         4.96         0.43         8.12         6.81         0.39 
TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
       47.80        74.07        44.75        60.79         1.71        24.33 
TCGA-39-5031 TCGA-39-5035 TCGA-39-5040 TCGA-43-2576 TCGA-43-3394 TCGA-43-3920 
       27.39        15.58        17.06        40.21        27.02        33.11 
TCGA-43-5668 TCGA-43-5670 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-7656 
       11.47        18.05        24.89        10.19         5.46         6.97 
TCGA-43-7657 TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 TCGA-43-A474 TCGA-43-A56V 
        7.76        13.38        11.77         2.93        11.61        12.03 
TCGA-46-3768 TCGA-46-6026 TCGA-51-4081 TCGA-52-7809 TCGA-52-7810 TCGA-56-1622 
        9.99        13.91        29.95         5.46        30.35        28.96 
TCGA-56-5897 TCGA-56-5898 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 
        0.10        18.25         2.04         0.62         0.99         0.43 
TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 
        0.99         1.45         1.32         0.85         0.20         0.03 
TCGA-56-8503 TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 
        1.35         1.81         1.18         2.07         0.56         0.53 
TCGA-56-8629 TCGA-56-A49D TCGA-56-A4BW TCGA-56-A4BX TCGA-56-A4ZJ TCGA-56-A5DS 
        1.12         1.25         0.07         1.51         0.82         0.26 
TCGA-58-8387 TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 TCGA-58-8393 TCGA-58-A46J 
       13.25        29.95        71.24        16.47        34.78        64.87 
TCGA-58-A46L TCGA-60-2696 TCGA-60-2698 TCGA-60-2703 TCGA-60-2706 TCGA-60-2707 
       36.59         3.58        10.22        96.82        92.71        21.73 
TCGA-60-2708 TCGA-60-2711 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2723 
       80.45        41.42        42.64         3.19        32.32        35.90 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 
       23.57        26.83        11.77        16.96        43.10         2.01 
TCGA-66-2742 TCGA-66-2753 TCGA-66-2755 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
       21.07         1.02         0.92        25.05         0.99         2.01 
TCGA-66-2766 TCGA-66-2768 TCGA-66-2769 TCGA-66-2771 TCGA-66-2773 TCGA-66-2778 
        1.02         2.01         7.07        19.00         3.02        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2785 TCGA-66-2786 TCGA-66-2788 
       12.03         3.98        12.00         1.97        25.97        22.98 
TCGA-66-2789 TCGA-66-2790 TCGA-66-2793 TCGA-68-7757 TCGA-68-8251 TCGA-68-A59I 
        4.04        22.98        10.06         6.94         3.16         3.98 
TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 
       73.12        75.09        23.28         0.49        42.28        70.13 
TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8008 TCGA-77-8009 
      106.95         0.16        46.78        15.75        86.76        53.95 
TCGA-77-8128 TCGA-77-8130 TCGA-77-8138 TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 
       37.81        82.92        17.72        11.54        26.40        27.39 
TCGA-77-8145 TCGA-77-8148 TCGA-77-8153 TCGA-77-8154 TCGA-77-A5GH TCGA-85-6560 
        6.97         9.63        55.36        35.90        23.44         0.36 
TCGA-85-7696 TCGA-85-7697 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 
        0.59         0.33         0.03         1.15         1.25         1.97 
TCGA-85-8048 TCGA-85-8287 TCGA-85-8288 TCGA-85-8350 TCGA-85-8351 TCGA-85-8352 
        0.85         1.45         1.78         1.97         1.81         2.20 
TCGA-85-8479 TCGA-85-8580 TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL TCGA-85-A4QR 
        0.72        14.63         0.10        15.62         0.49         0.82 
TCGA-85-A50M TCGA-85-A513 TCGA-85-A53L TCGA-90-7766 TCGA-90-7767 TCGA-90-7964 
        0.62         0.79         0.43         9.50         2.93        14.07 
TCGA-90-A4EE TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8065 TCGA-94-7033 
       10.88         2.70         3.48         4.01         2.30         2.86 
TCGA-94-7557 TCGA-94-7943 TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 TCGA-96-A4JK 
        0.16        11.70        44.19         6.21         6.94         8.98 
TCGA-96-A4JL TCGA-98-8020 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 TCGA-L3-A524 
        6.02         2.76        13.58         7.36        10.13        14.76 
TCGA-MF-A522 TCGA-NC-A5HG TCGA-NC-A5HI 
        2.73        50.89        37.32 

$`9P LOSS WILD-TYPE`
TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3416 TCGA-18-3421 TCGA-18-4721 
        4.47        81.01         4.80        28.34        43.76        90.54 
TCGA-18-5595 TCGA-21-1076 TCGA-21-1078 TCGA-21-1079 TCGA-21-1081 TCGA-21-5782 
       27.19        60.89        15.58        31.73         9.34        31.63 
TCGA-21-5784 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1017 TCGA-22-4595 
       41.69        19.99         7.33        14.93        48.82        24.13 
TCGA-22-4596 TCGA-22-4604 TCGA-22-4605 TCGA-22-5473 TCGA-22-5479 TCGA-22-5480 
        0.56        13.12        32.02        63.55        54.28        71.34 
TCGA-22-5481 TCGA-22-5489 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4566 
       79.20        62.86        16.64         7.63       114.05       173.82 
TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-34-5234 TCGA-34-5236 
      141.34        14.07        54.44        10.82        56.38         9.07 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5928 TCGA-34-7107 TCGA-37-3783 TCGA-37-3792 
       23.24        12.00        18.15         1.12         3.95         0.39 
TCGA-37-4129 TCGA-37-4132 TCGA-37-4133 TCGA-37-5819 TCGA-39-5021 TCGA-39-5022 
        6.58         7.46         7.82         3.39        68.58        55.20 
TCGA-39-5024 TCGA-39-5030 TCGA-39-5034 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
       70.03         1.94        36.39        35.64        35.70        17.88 
TCGA-43-2578 TCGA-43-2581 TCGA-43-6143 TCGA-43-6773 TCGA-43-7658 TCGA-43-A475 
       22.49        38.66        12.36         3.81        66.51         9.73 
TCGA-43-A56U TCGA-46-6025 TCGA-51-4079 TCGA-51-4080 TCGA-52-7622 TCGA-52-7811 
       14.20        10.65         0.39         0.39        17.79         8.75 
TCGA-52-7812 TCGA-56-8504 TCGA-56-A4BY TCGA-56-A4ZK TCGA-56-A5DR TCGA-58-8386 
       27.45         5.85         0.99         0.13         0.13         0.03 
TCGA-58-8388 TCGA-58-A46K TCGA-58-A46M TCGA-58-A46N TCGA-60-2695 TCGA-60-2697 
       12.43        34.36        23.24        17.75        21.11        12.23 
TCGA-60-2704 TCGA-60-2709 TCGA-60-2710 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 
       37.94        49.48        66.54         9.01        56.91        50.33 
TCGA-60-2715 TCGA-60-2716 TCGA-60-2722 TCGA-66-2744 TCGA-66-2754 TCGA-66-2756 
       35.34        48.49        29.85         0.99         2.01         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2767 TCGA-66-2770 TCGA-66-2777 TCGA-66-2783 
        0.99        21.01         2.01        23.01         2.01        24.95 
TCGA-66-2787 TCGA-66-2791 TCGA-66-2792 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
       40.01         5.03        30.02        54.08         4.01        49.05 
TCGA-68-7755 TCGA-68-7756 TCGA-68-8250 TCGA-68-A59J TCGA-77-6842 TCGA-77-7138 
        2.73         6.64         8.02         3.42        29.56        11.18 
TCGA-77-7139 TCGA-77-7140 TCGA-77-8007 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 
       89.98        20.78         6.51        12.59        53.92        39.09 
TCGA-77-8139 TCGA-77-8150 TCGA-77-8156 TCGA-77-A5FZ TCGA-77-A5G3 TCGA-77-A5GB 
      104.09        54.41         0.33       126.18       117.57        30.81 
TCGA-85-6175 TCGA-85-6561 TCGA-85-6798 TCGA-85-7698 TCGA-85-8049 TCGA-85-8052 
        9.67        12.99         1.12         1.61         1.97         0.53 
TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 TCGA-85-8353 
       16.77        14.07        16.87         0.43         0.36         1.78 
TCGA-85-8354 TCGA-85-8355 TCGA-85-8481 TCGA-85-8582 TCGA-90-6837 TCGA-90-7769 
        2.01         2.01         0.69        13.94        24.92        11.77 
TCGA-90-A4ED TCGA-92-8064 TCGA-96-7544 TCGA-98-7454 TCGA-J1-A4AH TCGA-L3-A4E7 
        8.02         5.26        39.88         8.42         7.30         1.15 
TCGA-LA-A446 TCGA-NC-A5HE 
        1.18        56.61 

  9P LOSS MUTATED 9P LOSS WILD-TYPE 
             0.03              0.03 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
           122.43            173.82 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
           12.030            15.255 
[1] "0.0 - 122.4 (12.0)" "0.0 - 173.8 (15.3)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
[1] "hr=" "1.1"
D57V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  9P LOSS MUTATED         1       48       83        0        36        38
  9P LOSS WILD-TYPE       0       21       53        1        14        32
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  9P LOSS MUTATED           36          8        3
  9P LOSS WILD-TYPE         18         12        2
D57V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  9P LOSS MUTATED    64 157  25  10
  9P LOSS WILD-TYPE  31  93  20   9
D57V4, multiclass
    clus
vv   9P LOSS MUTATED 9P LOSS WILD-TYPE
  T1              64                31
  T2             157                93
  T3              25                20
  T4              10                 9
                   vv
clus                 N0  N1  N2  N3
  9P LOSS MUTATED   165  65  22   2
  9P LOSS WILD-TYPE  90  44  12   3
D57V5, multiclass
    clus
vv   9P LOSS MUTATED 9P LOSS WILD-TYPE
  N0             165                90
  N1              65                44
  N2              22                12
  N3               2                 3
                   vv
clus                 M0  M1  MX
  9P LOSS MUTATED   218   3  32
  9P LOSS WILD-TYPE 131   2  17
D57V6, multiclass
    clus
vv   9P LOSS MUTATED 9P LOSS WILD-TYPE
  M0             218               131
  M1               3                 2
  MX              32                17
D57V7, binary
                   cls
clus                  0   1
  9P LOSS MUTATED    66 190
  9P LOSS WILD-TYPE  38 115
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P LOSS MUTATED     66  190
  9P LOSS WILD-TYPE   38  115
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  FEMALE              66                38
  MALE               190               115
D57V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  9P LOSS MUTATED                                       5
  9P LOSS WILD-TYPE                                     7
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  9P LOSS MUTATED                                        2
  9P LOSS WILD-TYPE                                      4
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  9P LOSS MUTATED                                         0
  9P LOSS WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  9P LOSS MUTATED                                                           249
  9P LOSS WILD-TYPE                                                         141
D57V9, multiclass
                                                             clus
vv                                                            9P LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     5
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    2
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             249
                                                             clus
vv                                                            9P LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       7
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      4
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               141
D57V10, binary
                   cls
clus                  0   1
  9P LOSS MUTATED     8 248
  9P LOSS WILD-TYPE   5 148
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P LOSS MUTATED      8  248
  9P LOSS WILD-TYPE    5  148
     clus
vv    9P LOSS MUTATED 9P LOSS WILD-TYPE
  NO                8                 5
  YES             248               148
D57V11, continuous
D57V12, continuous
                   vv
clus                 R0  R1  R2  RX
  9P LOSS MUTATED   204   5   3  12
  9P LOSS WILD-TYPE 128   3   1   6
D57V13, multiclass
    clus
vv   9P LOSS MUTATED 9P LOSS WILD-TYPE
  R0             204               128
  R1               5                 3
  R2               3                 1
  RX              12                 6

Clustering(58) Variable = 9Q LOSS MUTATION ANALYSIS
D58V1, survival
                   sevent
clus2                 0   1
  9Q LOSS MUTATED   122  60
  9Q LOSS WILD-TYPE 122  79
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
              182               201 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               60                79 
$`9Q LOSS MUTATED`
TCGA-18-3406 TCGA-18-3409 TCGA-18-3414 TCGA-18-3417 TCGA-18-3419 TCGA-18-4083 
       12.16        79.46        13.02        24.92         1.64         6.15 
TCGA-21-1070 TCGA-21-1075 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5786 
      119.54        70.16       119.80         8.78        31.63        33.93 
TCGA-21-5787 TCGA-21-A5DI TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 
       10.82        32.19         4.31        64.21         1.74        14.10 
TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4607 
       27.02        48.82        20.48        35.08        48.33        19.30 
TCGA-22-5474 TCGA-22-5478 TCGA-22-5482 TCGA-22-A5C4 TCGA-33-4532 TCGA-33-4547 
       14.63         0.79        11.74         0.95         7.63        43.10 
TCGA-33-4582 TCGA-33-4587 TCGA-33-6737 TCGA-33-6738 TCGA-34-2604 TCGA-34-2608 
      103.53        54.44        19.76        27.02        31.50        32.88 
TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
       31.27        50.24        67.79        14.07        30.94        18.15 
TCGA-34-5929 TCGA-37-4130 TCGA-37-4135 TCGA-37-4141 TCGA-39-5011 TCGA-39-5016 
        4.96         8.12         6.81         0.39        47.80        74.07 
TCGA-39-5019 TCGA-39-5024 TCGA-39-5028 TCGA-39-5031 TCGA-39-5035 TCGA-39-5037 
       44.75        70.03         1.71        27.39        15.58        35.70 
TCGA-43-2576 TCGA-43-3920 TCGA-43-5670 TCGA-43-6647 TCGA-43-6771 TCGA-43-7656 
       40.21        33.11        18.05        24.89         5.46         6.97 
TCGA-43-7657 TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 TCGA-43-A56V TCGA-46-6026 
        7.76        13.38        11.77         2.93        12.03        13.91 
TCGA-51-4081 TCGA-52-7810 TCGA-56-1622 TCGA-56-5897 TCGA-56-5898 TCGA-56-6545 
       29.95        30.35        28.96         0.10        18.25         2.04 
TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 
        0.62         0.99         0.43         0.99         1.45         1.32 
TCGA-56-7822 TCGA-56-8503 TCGA-56-8622 TCGA-56-8624 TCGA-56-8626 TCGA-56-8628 
        0.03         1.35         1.81         1.18         0.56         0.53 
TCGA-56-8629 TCGA-56-A49D TCGA-56-A4ZJ TCGA-56-A5DS TCGA-58-8390 TCGA-58-8392 
        1.12         1.25         0.82         0.26        29.95        16.47 
TCGA-58-8393 TCGA-58-A46J TCGA-60-2696 TCGA-60-2698 TCGA-60-2703 TCGA-60-2706 
       34.78        64.87         3.58        10.22        96.82        92.71 
TCGA-60-2708 TCGA-60-2712 TCGA-60-2714 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
       80.45         9.01        50.33        42.64         3.19        32.32 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2734 TCGA-66-2737 
       35.90        23.57        26.83        11.77        43.10         2.01 
TCGA-66-2742 TCGA-66-2753 TCGA-66-2755 TCGA-66-2759 TCGA-66-2763 TCGA-66-2769 
       21.07         1.02         0.92        25.05         0.99         7.07 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
       19.00         3.02        19.00        12.03         3.98        12.00 
TCGA-66-2785 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2793 TCGA-68-7757 
        1.97        22.98         4.04        22.98        10.06         6.94 
TCGA-68-8250 TCGA-68-8251 TCGA-68-A59I TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 
        8.02         3.16         3.98        29.56        73.12        75.09 
TCGA-77-6845 TCGA-77-7337 TCGA-77-7463 TCGA-77-8007 TCGA-77-8008 TCGA-77-8128 
       23.28       106.95        46.78         6.51        86.76        37.81 
TCGA-77-8130 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 TCGA-77-8145 
       82.92        17.72       104.09        11.54        26.40         6.97 
TCGA-77-8148 TCGA-77-8154 TCGA-77-A5GH TCGA-85-6560 TCGA-85-7697 TCGA-85-7843 
        9.63        35.90        23.44         0.36         0.33         1.15 
TCGA-85-8048 TCGA-85-8287 TCGA-85-8288 TCGA-85-8350 TCGA-85-8351 TCGA-85-8352 
        0.85         1.45         1.78         1.97         1.81         2.20 
TCGA-85-8664 TCGA-85-8666 TCGA-85-A4QR TCGA-85-A50M TCGA-85-A513 TCGA-85-A53L 
        0.10        15.62         0.82         0.62         0.79         0.43 
TCGA-90-7766 TCGA-90-7767 TCGA-90-7964 TCGA-90-A4EE TCGA-92-7340 TCGA-92-7341 
        9.50         2.93        14.07        10.88         2.70         3.48 
TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 TCGA-96-8169 
        2.30         2.86         0.16        11.70        39.88         6.21 
TCGA-96-8170 TCGA-98-8020 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 TCGA-L3-A4E7 
        6.94         2.76        13.58         7.36        10.13         1.15 
TCGA-NC-A5HG TCGA-NC-A5HI 
       50.89        37.32 

$`9Q LOSS WILD-TYPE`
TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 TCGA-18-3415 
        4.47        81.01         4.80        46.52        11.34        59.51 
TCGA-18-3416 TCGA-18-3421 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       28.34        43.76         2.79        90.54         3.02        27.19 
TCGA-21-1071 TCGA-21-1072 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 
       46.88        99.16        60.89        34.78        15.58        31.73 
TCGA-21-1080 TCGA-21-1081 TCGA-21-5783 TCGA-21-5784 TCGA-22-0940 TCGA-22-0944 
      122.43         9.34        88.11        41.69        19.99         7.33 
TCGA-22-1000 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 
       14.93        24.13         0.56        38.17        34.75        13.12 
TCGA-22-4605 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       32.02         9.57        11.77        31.73        64.93        63.55 
TCGA-22-5477 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5483 TCGA-22-5485 
       44.25        54.28        71.34        79.20        18.84        30.12 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4533 TCGA-33-4538 TCGA-33-4566 
       62.86        56.32        16.64       114.05        97.94       173.82 
TCGA-33-4583 TCGA-33-4586 TCGA-33-4589 TCGA-34-2596 TCGA-34-2600 TCGA-34-2605 
      141.34        14.07        10.82         2.63        61.61        28.96 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-7107 TCGA-37-3783 
       56.38         9.07        23.24        12.00         1.12         3.95 
TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4132 TCGA-37-4133 TCGA-37-5819 
        0.43         0.39         6.58         7.46         7.82         3.39 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5027 TCGA-39-5029 TCGA-39-5030 TCGA-39-5034 
       68.58        55.20        60.79        24.33         1.94        36.39 
TCGA-39-5036 TCGA-39-5039 TCGA-39-5040 TCGA-43-2578 TCGA-43-2581 TCGA-43-3394 
       35.64        17.88        17.06        22.49        38.66        27.02 
TCGA-43-5668 TCGA-43-6143 TCGA-43-6770 TCGA-43-6773 TCGA-43-7658 TCGA-43-A474 
       11.47        12.36        10.19         3.81        66.51        11.61 
TCGA-43-A475 TCGA-43-A56U TCGA-46-3768 TCGA-46-6025 TCGA-51-4079 TCGA-51-4080 
        9.73        14.20         9.99        10.65         0.39         0.39 
TCGA-52-7622 TCGA-52-7809 TCGA-52-7811 TCGA-52-7812 TCGA-56-7582 TCGA-56-7730 
       17.79         5.46         8.75        27.45         0.85         0.20 
TCGA-56-8504 TCGA-56-8625 TCGA-56-A4BW TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A4ZK 
        5.85         2.07         0.07         1.51         0.99         0.13 
TCGA-56-A5DR TCGA-58-8386 TCGA-58-8387 TCGA-58-8388 TCGA-58-8391 TCGA-58-A46K 
        0.13         0.03        13.25        12.43        71.24        34.36 
TCGA-58-A46L TCGA-58-A46M TCGA-58-A46N TCGA-60-2695 TCGA-60-2697 TCGA-60-2704 
       36.59        23.24        17.75        21.11        12.23        37.94 
TCGA-60-2707 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2713 TCGA-60-2715 
       21.73        49.48        66.54        41.42        56.91        35.34 
TCGA-60-2716 TCGA-60-2722 TCGA-66-2727 TCGA-66-2744 TCGA-66-2754 TCGA-66-2756 
       48.49        29.85        16.96         0.99         2.01         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
        0.99        21.01         2.01         1.02         2.01         2.01 
TCGA-66-2770 TCGA-66-2777 TCGA-66-2783 TCGA-66-2786 TCGA-66-2787 TCGA-66-2791 
       23.01         2.01        24.95        25.97        40.01         5.03 
TCGA-66-2792 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 
       30.02        54.08         4.01        49.05         2.73         6.64 
TCGA-68-A59J TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 
        3.42        11.18        89.98        20.78         0.49        42.28 
TCGA-77-7335 TCGA-77-7338 TCGA-77-7465 TCGA-77-8009 TCGA-77-8131 TCGA-77-8133 
       70.13         0.16        15.75        53.95        12.59        53.92 
TCGA-77-8136 TCGA-77-8144 TCGA-77-8150 TCGA-77-8153 TCGA-77-8156 TCGA-77-A5FZ 
       39.09        27.39        54.41        55.36         0.33       126.18 
TCGA-77-A5G3 TCGA-77-A5GB TCGA-85-6175 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 
      117.57        30.81         9.67        12.99         1.12         0.59 
TCGA-85-7698 TCGA-85-7699 TCGA-85-7844 TCGA-85-7950 TCGA-85-8049 TCGA-85-8052 
        1.61         0.03         1.25         1.97         1.97         0.53 
TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 TCGA-85-8353 
       16.77        14.07        16.87         0.43         0.36         1.78 
TCGA-85-8354 TCGA-85-8355 TCGA-85-8479 TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 
        2.01         2.01         0.72         0.69        14.63        13.94 
TCGA-85-A4CL TCGA-90-6837 TCGA-90-7769 TCGA-90-A4ED TCGA-92-8063 TCGA-92-8064 
        0.49        24.92        11.77         8.02         4.01         5.26 
TCGA-96-7545 TCGA-96-A4JK TCGA-96-A4JL TCGA-98-7454 TCGA-J1-A4AH TCGA-L3-A524 
       44.19         8.98         6.02         8.42         7.30        14.76 
TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE 
        1.18         2.73        56.61 

  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
             0.03              0.03 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
           119.80            173.82 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
           12.015            14.630 
[1] "0.0 - 119.8 (12.0)" "0.0 - 173.8 (14.6)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
[1] "hr=" "1"  
D58V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  9Q LOSS MUTATED         1       38       57        0        26        37
  9Q LOSS WILD-TYPE       0       31       79        1        24        33
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  9Q LOSS MUTATED           24          6        3
  9Q LOSS WILD-TYPE         30         14        2
D58V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  9Q LOSS MUTATED    50 119  21   5
  9Q LOSS WILD-TYPE  45 131  24  14
D58V4, multiclass
    clus
vv   9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  T1              50                45
  T2             119               131
  T3              21                24
  T4               5                14
                   vv
clus                 N0  N1  N2  N3
  9Q LOSS MUTATED   121  56  14   2
  9Q LOSS WILD-TYPE 134  53  20   3
D58V5, multiclass
    clus
vv   9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  N0             121               134
  N1              56                53
  N2              14                20
  N3               2                 3
                   vv
clus                 M0  M1  MX
  9Q LOSS MUTATED   161   3  29
  9Q LOSS WILD-TYPE 188   2  20
D58V6, multiclass
    clus
vv   9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  M0             161               188
  M1               3                 2
  MX              29                20
D58V7, binary
                   cls
clus                  0   1
  9Q LOSS MUTATED    51 144
  9Q LOSS WILD-TYPE  53 161
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q LOSS MUTATED     51  144
  9Q LOSS WILD-TYPE   53  161
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  FEMALE              51                53
  MALE               144               161
D58V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  9Q LOSS MUTATED                                       3
  9Q LOSS WILD-TYPE                                     9
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  9Q LOSS MUTATED                                        1
  9Q LOSS WILD-TYPE                                      5
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  9Q LOSS MUTATED                                         1
  9Q LOSS WILD-TYPE                                       0
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  9Q LOSS MUTATED                                                           190
  9Q LOSS WILD-TYPE                                                         200
D58V9, multiclass
                                                             clus
vv                                                            9Q LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     3
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             190
                                                             clus
vv                                                            9Q LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       9
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               200
D58V10, binary
                   cls
clus                  0   1
  9Q LOSS MUTATED     4 191
  9Q LOSS WILD-TYPE   9 205
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q LOSS MUTATED      4  191
  9Q LOSS WILD-TYPE    9  205
     clus
vv    9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  NO                4                 9
  YES             191               205
D58V11, continuous
D58V12, continuous
                   vv
clus                 R0  R1  R2  RX
  9Q LOSS MUTATED   154   3   2   6
  9Q LOSS WILD-TYPE 178   5   2  12
D58V13, multiclass
    clus
vv   9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  R0             154               178
  R1               3                 5
  R2               2                 2
  RX               6                12

Clustering(59) Variable = 10P LOSS MUTATION ANALYSIS
D59V1, survival
                    sevent
clus2                  0   1
  10P LOSS MUTATED   107  60
  10P LOSS WILD-TYPE 137  79
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
               167                216 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                60                 79 
$`10P LOSS MUTATED`
TCGA-18-3406 TCGA-18-3411 TCGA-18-3412 TCGA-18-3421 TCGA-18-4083 TCGA-18-5592 
       12.16        46.52        11.34        43.76         6.15         3.02 
TCGA-18-5595 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 
       27.19        46.88        99.16        70.16        60.89        34.78 
TCGA-21-1079 TCGA-21-1080 TCGA-21-1082 TCGA-21-5786 TCGA-21-A5DI TCGA-22-0940 
       31.73       122.43       119.80        33.93        32.19        19.99 
TCGA-22-1000 TCGA-22-1005 TCGA-22-1011 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 
       14.93        64.21         1.74        27.02        20.48        35.08 
TCGA-22-4595 TCGA-22-4599 TCGA-22-4609 TCGA-22-4613 TCGA-22-5474 TCGA-22-5477 
       24.13        38.17         9.57        11.77        14.63        44.25 
TCGA-22-5478 TCGA-22-5479 TCGA-22-5482 TCGA-22-5483 TCGA-22-5491 TCGA-33-4533 
        0.79        54.28        11.74        18.84        56.32       114.05 
TCGA-33-4538 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-34-2596 TCGA-34-2605 
       97.94       103.53       141.34        14.07         2.63        28.96 
TCGA-34-5236 TCGA-34-5927 TCGA-37-3789 TCGA-37-3792 TCGA-37-4135 TCGA-37-5819 
        9.07        30.94         0.43         0.39         6.81         3.39 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5027 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 
       44.75        68.58        60.79        24.33         1.94        27.39 
TCGA-39-5036 TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 TCGA-43-3920 TCGA-43-6143 
       35.64        17.88        40.21        22.49        33.11        12.36 
TCGA-43-6770 TCGA-43-8118 TCGA-43-A56U TCGA-43-A56V TCGA-51-4080 TCGA-51-4081 
       10.19         2.93        14.20        12.03         0.39        29.95 
TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 TCGA-56-1622 TCGA-56-5898 TCGA-56-7223 
       17.79         5.46        30.35        28.96        18.25         0.99 
TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 TCGA-56-8503 TCGA-56-8622 TCGA-56-8626 
        1.32         0.85         0.20         1.35         1.81         0.56 
TCGA-56-8628 TCGA-56-8629 TCGA-56-A49D TCGA-56-A4BY TCGA-56-A4ZK TCGA-58-8386 
        0.53         1.12         1.25         0.99         0.13         0.03 
TCGA-58-8391 TCGA-58-8392 TCGA-58-8393 TCGA-58-A46J TCGA-58-A46K TCGA-58-A46M 
       71.24        16.47        34.78        64.87        34.36        23.24 
TCGA-60-2695 TCGA-60-2703 TCGA-60-2704 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
       21.11        96.82        37.94        80.45        49.48        66.54 
TCGA-60-2715 TCGA-60-2719 TCGA-60-2722 TCGA-60-2723 TCGA-60-2725 TCGA-66-2727 
       35.34        42.64        29.85        35.90        26.83        16.96 
TCGA-66-2737 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2757 TCGA-66-2758 
        2.01         1.02         2.01         0.92         0.99        21.01 
TCGA-66-2759 TCGA-66-2770 TCGA-66-2777 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
       25.05        23.01         2.01        25.97        40.01        22.98 
TCGA-66-2789 TCGA-66-2791 TCGA-66-2793 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 
        4.04         5.03        10.06        49.05         2.73         6.64 
TCGA-68-8250 TCGA-68-8251 TCGA-68-A59J TCGA-77-6842 TCGA-77-6845 TCGA-77-7138 
        8.02         3.16         3.42        29.56        23.28        11.18 
TCGA-77-7139 TCGA-77-7465 TCGA-77-8009 TCGA-77-8130 TCGA-77-8133 TCGA-77-8136 
       89.98        15.75        53.95        82.92        53.92        39.09 
TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8144 TCGA-77-8153 TCGA-77-8156 
       17.72       104.09        11.54        27.39        55.36         0.33 
TCGA-77-A5GB TCGA-85-6798 TCGA-85-7696 TCGA-85-7699 TCGA-85-7844 TCGA-85-7950 
       30.81         1.12         0.59         0.03         1.25         1.97 
TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8277 TCGA-85-8351 TCGA-85-8353 
        0.53        16.77        14.07         0.36         1.81         1.78 
TCGA-85-8354 TCGA-85-8479 TCGA-85-8580 TCGA-85-A4QR TCGA-90-A4EE TCGA-92-8064 
        2.01         0.72        14.63         0.82        10.88         5.26 
TCGA-94-7033 TCGA-94-7557 TCGA-96-8170 TCGA-96-A4JK TCGA-98-8020 TCGA-98-8021 
        2.86         0.16         6.94         8.98         2.76        13.58 
TCGA-98-8023 TCGA-J1-A4AH TCGA-L3-A524 TCGA-LA-A446 TCGA-MF-A522 
       10.13         7.30        14.76         1.18         2.73 

$`10P LOSS WILD-TYPE`
TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3414 TCGA-18-3415 
        4.47        81.01        79.46         4.80        13.02        59.51 
TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-4086 TCGA-18-4721 TCGA-21-1070 
       28.34        24.92         1.64         2.79        90.54       119.54 
TCGA-21-1078 TCGA-21-1081 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 
       15.58         9.34         8.78        31.63        88.11        41.69 
TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1012 TCGA-22-1017 TCGA-22-4594 
       10.82         7.33         4.31        14.10        48.82        48.33 
TCGA-22-4596 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-5471 
        0.56        34.75        13.12        32.02        19.30        31.73 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5480 TCGA-22-5481 TCGA-22-5485 TCGA-22-5489 
       64.93        63.55        71.34        79.20        30.12        62.86 
TCGA-22-5492 TCGA-22-A5C4 TCGA-33-4532 TCGA-33-4547 TCGA-33-4566 TCGA-33-4587 
       16.64         0.95         7.63        43.10       173.82        54.44 
TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2600 TCGA-34-2604 TCGA-34-2608 
       10.82        19.76        27.02        61.61        31.50        32.88 
TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5239 TCGA-34-5240 
       31.27        50.24        67.79        56.38        23.24        12.00 
TCGA-34-5241 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-4129 
       14.07        18.15         4.96         1.12         3.95         6.58 
TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4141 TCGA-39-5011 TCGA-39-5016 
        8.12         7.46         7.82         0.39        47.80        74.07 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 TCGA-39-5034 TCGA-39-5035 TCGA-39-5037 
       55.20        70.03         1.71        36.39        15.58        35.70 
TCGA-39-5040 TCGA-43-2581 TCGA-43-3394 TCGA-43-5668 TCGA-43-5670 TCGA-43-6647 
       17.06        38.66        27.02        11.47        18.05        24.89 
TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 
        5.46         3.81         6.97         7.76        66.51        13.38 
TCGA-43-8116 TCGA-43-A474 TCGA-43-A475 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
       11.77        11.61         9.73         9.99        10.65        13.91 
TCGA-51-4079 TCGA-52-7811 TCGA-52-7812 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        0.39         8.75        27.45         0.10         2.04         0.62 
TCGA-56-7221 TCGA-56-7222 TCGA-56-7579 TCGA-56-7822 TCGA-56-8504 TCGA-56-8624 
        0.99         0.43         1.45         0.03         5.85         1.18 
TCGA-56-8625 TCGA-56-A4BW TCGA-56-A4BX TCGA-56-A4ZJ TCGA-56-A5DR TCGA-56-A5DS 
        2.07         0.07         1.51         0.82         0.13         0.26 
TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 TCGA-58-A46L TCGA-58-A46N TCGA-60-2696 
       13.25        12.43        29.95        36.59        17.75         3.58 
TCGA-60-2697 TCGA-60-2698 TCGA-60-2706 TCGA-60-2707 TCGA-60-2711 TCGA-60-2712 
       12.23        10.22        92.71        21.73        41.42         9.01 
TCGA-60-2713 TCGA-60-2714 TCGA-60-2716 TCGA-60-2720 TCGA-60-2721 TCGA-60-2724 
       56.91        50.33        48.49         3.19        32.32        23.57 
TCGA-60-2726 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2756 TCGA-66-2763 
       11.77        43.10        21.07         0.99         0.99         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2771 
        2.01         1.02         2.01         2.01         7.07        19.00 
TCGA-66-2773 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        3.02        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2785 TCGA-66-2790 TCGA-66-2792 TCGA-66-2794 TCGA-66-2795 TCGA-68-7757 
        1.97        22.98        30.02        54.08         4.01         6.94 
TCGA-68-A59I TCGA-77-6843 TCGA-77-6844 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 
        3.98        73.12        75.09        20.78         0.49        42.28 
TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-8007 TCGA-77-8008 
       70.13       106.95         0.16        46.78         6.51        86.76 
TCGA-77-8128 TCGA-77-8131 TCGA-77-8143 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 
       37.81        12.59        26.40         6.97         9.63        54.41 
TCGA-77-8154 TCGA-77-A5FZ TCGA-77-A5G3 TCGA-77-A5GH TCGA-85-6175 TCGA-85-6560 
       35.90       126.18       117.57        23.44         9.67         0.36 
TCGA-85-6561 TCGA-85-7697 TCGA-85-7698 TCGA-85-7843 TCGA-85-8048 TCGA-85-8049 
       12.99         0.33         1.61         1.15         0.85         1.97 
TCGA-85-8072 TCGA-85-8276 TCGA-85-8287 TCGA-85-8288 TCGA-85-8350 TCGA-85-8352 
       16.87         0.43         1.45         1.78         1.97         2.20 
TCGA-85-8355 TCGA-85-8481 TCGA-85-8582 TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL 
        2.01         0.69        13.94         0.10        15.62         0.49 
TCGA-85-A50M TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 
        0.62         0.79         0.43        24.92         9.50         2.93 
TCGA-90-7769 TCGA-90-7964 TCGA-90-A4ED TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 
       11.77        14.07         8.02         2.70         3.48         4.01 
TCGA-92-8065 TCGA-94-7943 TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 TCGA-96-A4JL 
        2.30        11.70        39.88        44.19         6.21         6.02 
TCGA-98-7454 TCGA-98-8022 TCGA-L3-A4E7 TCGA-NC-A5HE TCGA-NC-A5HG TCGA-NC-A5HI 
        8.42         7.36         1.15        56.61        50.89        37.32 

  10P LOSS MUTATED 10P LOSS WILD-TYPE 
              0.03               0.03 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
            141.34             173.82 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
            15.750             12.015 
[1] "0.0 - 141.3 (15.8)" "0.0 - 173.8 (12.0)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56U 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-43-A56V         TCGA-46-3768         TCGA-46-6025 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-46-6026         TCGA-51-4079         TCGA-51-4080 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-51-4081         TCGA-52-7622         TCGA-52-7809 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-52-7810         TCGA-52-7811         TCGA-52-7812 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-5898 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
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        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8153         TCGA-77-8154 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5FZ         TCGA-77-A5G3 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-77-A5GB         TCGA-77-A5GH         TCGA-85-6175 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D59V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  10P LOSS MUTATED         1       29       69        0        17        27
  10P LOSS WILD-TYPE       0       40       67        1        33        43
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  10P LOSS MUTATED           25          8        1
  10P LOSS WILD-TYPE         29         12        4
D59V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  10P LOSS MUTATED    40 111  19   7
  10P LOSS WILD-TYPE  55 139  26  12
D59V4, multiclass
    clus
vv   10P LOSS MUTATED 10P LOSS WILD-TYPE
  T1               40                 55
  T2              111                139
  T3               19                 26
  T4                7                 12
                    vv
clus                  N0  N1  N2  N3
  10P LOSS MUTATED   117  40  16   2
  10P LOSS WILD-TYPE 138  69  18   3
D59V5, multiclass
    clus
vv   10P LOSS MUTATED 10P LOSS WILD-TYPE
  N0              117                138
  N1               40                 69
  N2               16                 18
  N3                2                  3
                    vv
clus                  M0  M1  MX
  10P LOSS MUTATED   155   1  18
  10P LOSS WILD-TYPE 194   4  31
D59V6, multiclass
    clus
vv   10P LOSS MUTATED 10P LOSS WILD-TYPE
  M0              155                194
  M1                1                  4
  MX               18                 31
D59V7, binary
                    cls
clus                   0   1
  10P LOSS MUTATED    39 138
  10P LOSS WILD-TYPE  65 167
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P LOSS MUTATED     39  138
  10P LOSS WILD-TYPE   65  167
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  FEMALE               39                 65
  MALE                138                167
D59V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  10P LOSS MUTATED                                       5
  10P LOSS WILD-TYPE                                     7
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  10P LOSS MUTATED                                        2
  10P LOSS WILD-TYPE                                      4
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  10P LOSS MUTATED                                         0
  10P LOSS WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  10P LOSS MUTATED                                                           170
  10P LOSS WILD-TYPE                                                         220
D59V9, multiclass
                                                             clus
vv                                                            10P LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      5
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     2
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              170
                                                             clus
vv                                                            10P LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                        7
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       4
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                220
D59V10, binary
                    cls
clus                   0   1
  10P LOSS MUTATED     4 173
  10P LOSS WILD-TYPE   9 223
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P LOSS MUTATED      4  173
  10P LOSS WILD-TYPE    9  223
     clus
vv    10P LOSS MUTATED 10P LOSS WILD-TYPE
  NO                 4                  9
  YES              173                223
D59V11, continuous
D59V12, continuous
                    vv
clus                  R0  R1  R2  RX
  10P LOSS MUTATED   150   3   0   8
  10P LOSS WILD-TYPE 182   5   4  10
D59V13, multiclass
    clus
vv   10P LOSS MUTATED 10P LOSS WILD-TYPE
  R0              150                182
  R1                3                  5
  R2                0                  4
  RX                8                 10

Clustering(60) Variable = 10Q LOSS MUTATION ANALYSIS
D60V1, survival
                    sevent
clus2                  0   1
  10Q LOSS MUTATED   114  62
  10Q LOSS WILD-TYPE 130  77
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
               176                207 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                62                 77 
$`10Q LOSS MUTATED`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3411 TCGA-18-3412 TCGA-18-4083 TCGA-18-4721 
       12.16         4.47        46.52        11.34         6.15        90.54 
TCGA-18-5592 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 
        3.02        46.88        99.16        70.16        60.89        34.78 
TCGA-21-1082 TCGA-21-5783 TCGA-21-A5DI TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 
      119.80        88.11        32.19        19.99         7.33        14.93 
TCGA-22-1005 TCGA-22-1011 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4609 
       64.21         1.74        35.08        24.13        38.17         9.57 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5482 TCGA-22-5483 
       14.63        44.25         0.79        54.28        11.74        18.84 
TCGA-22-5491 TCGA-33-4533 TCGA-33-4538 TCGA-33-4583 TCGA-33-4586 TCGA-33-6738 
       56.32       114.05        97.94       141.34        14.07        27.02 
TCGA-34-2596 TCGA-34-2605 TCGA-34-5236 TCGA-34-5927 TCGA-34-5929 TCGA-37-3792 
        2.63        28.96         9.07        30.94         4.96         0.39 
TCGA-37-4135 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5027 
        6.81         3.39        74.07        44.75        68.58        60.79 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5036 TCGA-39-5039 TCGA-43-2576 
       24.33         1.94        27.39        35.64        17.88        40.21 
TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-6770 TCGA-43-7658 TCGA-43-A474 
       22.49        27.02        33.11        10.19        66.51        11.61 
TCGA-43-A56U TCGA-43-A56V TCGA-46-6025 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 
       14.20        12.03        10.65         0.39         0.39        29.95 
TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 TCGA-56-1622 TCGA-56-5898 TCGA-56-7221 
       17.79         5.46        30.35        28.96        18.25         0.99 
TCGA-56-7223 TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 TCGA-56-8503 TCGA-56-8622 
        0.99         1.32         0.85         0.20         1.35         1.81 
TCGA-56-8628 TCGA-56-8629 TCGA-56-A49D TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A4ZK 
        0.53         1.12         1.25         1.51         0.99         0.13 
TCGA-58-8386 TCGA-58-8388 TCGA-58-8391 TCGA-58-8392 TCGA-58-8393 TCGA-58-A46J 
        0.03        12.43        71.24        16.47        34.78        64.87 
TCGA-58-A46K TCGA-58-A46M TCGA-60-2695 TCGA-60-2704 TCGA-60-2708 TCGA-60-2709 
       34.36        23.24        21.11        37.94        80.45        49.48 
TCGA-60-2710 TCGA-60-2712 TCGA-60-2715 TCGA-60-2719 TCGA-60-2722 TCGA-60-2723 
       66.54         9.01        35.34        42.64        29.85        35.90 
TCGA-60-2725 TCGA-66-2727 TCGA-66-2737 TCGA-66-2753 TCGA-66-2754 TCGA-66-2757 
       26.83        16.96         2.01         1.02         2.01         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2770 TCGA-66-2773 TCGA-66-2782 TCGA-66-2785 
       21.01        25.05        23.01         3.02        12.00         1.97 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 
       25.97        40.01        22.98         4.04         5.03        30.02 
TCGA-66-2793 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-8251 
       10.06        49.05         2.73         6.64         6.94         3.16 
TCGA-68-A59J TCGA-77-6842 TCGA-77-7138 TCGA-77-7139 TCGA-77-7463 TCGA-77-7465 
        3.42        29.56        11.18        89.98        46.78        15.75 
TCGA-77-8009 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 
       53.95        53.92        39.09        17.72       104.09        11.54 
TCGA-77-8143 TCGA-77-8144 TCGA-77-8148 TCGA-77-8153 TCGA-77-8156 TCGA-77-A5G3 
       26.40        27.39         9.63        55.36         0.33       117.57 
TCGA-77-A5GB TCGA-85-6560 TCGA-85-6798 TCGA-85-7696 TCGA-85-7698 TCGA-85-7699 
       30.81         0.36         1.12         0.59         1.61         0.03 
TCGA-85-7844 TCGA-85-7950 TCGA-85-8052 TCGA-85-8070 TCGA-85-8277 TCGA-85-8351 
        1.25         1.97         0.53        16.77         0.36         1.81 
TCGA-85-8353 TCGA-85-8354 TCGA-85-8479 TCGA-85-8580 TCGA-85-A4QR TCGA-90-A4EE 
        1.78         2.01         0.72        14.63         0.82        10.88 
TCGA-92-8064 TCGA-94-7033 TCGA-94-7557 TCGA-96-7545 TCGA-96-8170 TCGA-96-A4JK 
        5.26         2.86         0.16        44.19         6.94         8.98 
TCGA-98-8021 TCGA-98-8023 TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-L3-A524 TCGA-LA-A446 
       13.58        10.13         7.30         1.15        14.76         1.18 
TCGA-MF-A522 TCGA-NC-A5HI 
        2.73        37.32 

$`10Q LOSS WILD-TYPE`
TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 
       81.01        79.46         4.80        13.02        59.51        28.34 
TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4086 TCGA-18-5595 TCGA-21-1070 
       24.92         1.64        43.76         2.79        27.19       119.54 
TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 TCGA-21-1083 TCGA-21-5782 
       15.58        31.73       122.43         9.34         8.78        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-1002 TCGA-22-1012 TCGA-22-1016 
       41.69        33.93        10.82         4.31        14.10        27.02 
TCGA-22-1017 TCGA-22-4591 TCGA-22-4594 TCGA-22-4596 TCGA-22-4601 TCGA-22-4604 
       48.82        20.48        48.33         0.56        34.75        13.12 
TCGA-22-4605 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       32.02        19.30        11.77        31.73        64.93        63.55 
TCGA-22-5480 TCGA-22-5481 TCGA-22-5485 TCGA-22-5489 TCGA-22-5492 TCGA-22-A5C4 
       71.34        79.20        30.12        62.86        16.64         0.95 
TCGA-33-4532 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4587 TCGA-33-4589 
        7.63        43.10       173.82       103.53        54.44        10.82 
TCGA-33-6737 TCGA-34-2600 TCGA-34-2604 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 
       19.76        61.61        31.50        32.88        31.27        50.24 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5928 
       67.79        56.38        23.24        12.00        14.07        18.15 
TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 
        1.12         3.95         0.43         6.58         8.12         7.46 
TCGA-37-4133 TCGA-37-4141 TCGA-39-5011 TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 
        7.82         0.39        47.80        55.20        70.03         1.71 
TCGA-39-5034 TCGA-39-5035 TCGA-39-5037 TCGA-39-5040 TCGA-43-2581 TCGA-43-5668 
       36.39        15.58        35.70        17.06        38.66        11.47 
TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 
       18.05        12.36        24.89         5.46         3.81         6.97 
TCGA-43-7657 TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 TCGA-43-A475 TCGA-46-3768 
        7.76        13.38        11.77         2.93         9.73         9.99 
TCGA-46-6026 TCGA-52-7811 TCGA-52-7812 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
       13.91         8.75        27.45         0.10         2.04         0.62 
TCGA-56-7222 TCGA-56-7579 TCGA-56-7822 TCGA-56-8504 TCGA-56-8624 TCGA-56-8625 
        0.43         1.45         0.03         5.85         1.18         2.07 
TCGA-56-8626 TCGA-56-A4BW TCGA-56-A4ZJ TCGA-56-A5DR TCGA-56-A5DS TCGA-58-8387 
        0.56         0.07         0.82         0.13         0.26        13.25 
TCGA-58-8390 TCGA-58-A46L TCGA-58-A46N TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 
       29.95        36.59        17.75         3.58        12.23        10.22 
TCGA-60-2703 TCGA-60-2706 TCGA-60-2707 TCGA-60-2711 TCGA-60-2713 TCGA-60-2714 
       96.82        92.71        21.73        41.42        56.91        50.33 
TCGA-60-2716 TCGA-60-2720 TCGA-60-2721 TCGA-60-2724 TCGA-60-2726 TCGA-66-2734 
       48.49         3.19        32.32        23.57        11.77        43.10 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2755 TCGA-66-2756 TCGA-66-2763 TCGA-66-2765 
       21.07         0.99         0.92         0.99         0.99         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2771 TCGA-66-2777 
        1.02         2.01         2.01         7.07        19.00         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2783 TCGA-66-2790 TCGA-66-2794 
       19.00        12.03         3.98        24.95        22.98        54.08 
TCGA-66-2795 TCGA-68-8250 TCGA-68-A59I TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 
        4.01         8.02         3.98        73.12        75.09        23.28 
TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 
       20.78         0.49        42.28        70.13       106.95         0.16 
TCGA-77-8007 TCGA-77-8008 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8145 
        6.51        86.76        37.81        82.92        12.59         6.97 
TCGA-77-8150 TCGA-77-8154 TCGA-77-A5FZ TCGA-77-A5GH TCGA-85-6175 TCGA-85-6561 
       54.41        35.90       126.18        23.44         9.67        12.99 
TCGA-85-7697 TCGA-85-7843 TCGA-85-8048 TCGA-85-8049 TCGA-85-8071 TCGA-85-8072 
        0.33         1.15         0.85         1.97        14.07        16.87 
TCGA-85-8276 TCGA-85-8287 TCGA-85-8288 TCGA-85-8350 TCGA-85-8352 TCGA-85-8355 
        0.43         1.45         1.78         1.97         2.20         2.01 
TCGA-85-8481 TCGA-85-8582 TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL TCGA-85-A50M 
        0.69        13.94         0.10        15.62         0.49         0.62 
TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 
        0.79         0.43        24.92         9.50         2.93        11.77 
TCGA-90-7964 TCGA-90-A4ED TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8065 
       14.07         8.02         2.70         3.48         4.01         2.30 
TCGA-94-7943 TCGA-96-7544 TCGA-96-8169 TCGA-96-A4JL TCGA-98-7454 TCGA-98-8020 
       11.70        39.88         6.21         6.02         8.42         2.76 
TCGA-98-8022 TCGA-NC-A5HE TCGA-NC-A5HG 
        7.36        56.61        50.89 

  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
              0.03               0.03 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
            141.34             173.82 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
             14.63              12.99 
[1] "0.0 - 141.3 (14.6)" "0.0 - 173.8 (13.0)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
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  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56U 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-43-A56V         TCGA-46-3768         TCGA-46-6025 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-46-6026         TCGA-51-4079         TCGA-51-4080 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-51-4081         TCGA-52-7622         TCGA-52-7809 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-52-7810         TCGA-52-7811         TCGA-52-7812 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-5898 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-56-A49D         TCGA-56-A4BW         TCGA-56-A4BX 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-56-A4BY         TCGA-56-A4ZJ         TCGA-56-A4ZK 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-56-A5DR         TCGA-56-A5DS         TCGA-58-8386 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-68-8250         TCGA-68-8251         TCGA-68-A59I 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-68-A59J         TCGA-77-6842         TCGA-77-6843 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-77-8150         TCGA-77-8153         TCGA-77-8154 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5FZ         TCGA-77-A5G3 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-77-A5GB         TCGA-77-A5GH         TCGA-85-6175 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
[1] "hr=" "1.1"
D60V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  10Q LOSS MUTATED         1       28       73        0        21        28
  10Q LOSS WILD-TYPE       0       41       63        1        29        42
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  10Q LOSS MUTATED           25          8        1
  10Q LOSS WILD-TYPE         29         12        4
D60V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  10Q LOSS MUTATED    42 120  18   6
  10Q LOSS WILD-TYPE  53 130  27  13
D60V4, multiclass
    clus
vv   10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  T1               42                 53
  T2              120                130
  T3               18                 27
  T4                6                 13
                    vv
clus                  N0  N1  N2  N3
  10Q LOSS MUTATED   122  44  16   2
  10Q LOSS WILD-TYPE 133  65  18   3
D60V5, multiclass
    clus
vv   10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  N0              122                133
  N1               44                 65
  N2               16                 18
  N3                2                  3
                    vv
clus                  M0  M1  MX
  10Q LOSS MUTATED   161   1  20
  10Q LOSS WILD-TYPE 188   4  29
D60V6, multiclass
    clus
vv   10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  M0              161                188
  M1                1                  4
  MX               20                 29
D60V7, binary
                    cls
clus                   0   1
  10Q LOSS MUTATED    42 144
  10Q LOSS WILD-TYPE  62 161
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q LOSS MUTATED     42  144
  10Q LOSS WILD-TYPE   62  161
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  FEMALE               42                 62
  MALE                144                161
D60V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  10Q LOSS MUTATED                                       6
  10Q LOSS WILD-TYPE                                     6
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  10Q LOSS MUTATED                                        2
  10Q LOSS WILD-TYPE                                      4
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  10Q LOSS MUTATED                                         0
  10Q LOSS WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  10Q LOSS MUTATED                                                           178
  10Q LOSS WILD-TYPE                                                         212
D60V9, multiclass
                                                             clus
vv                                                            10Q LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      6
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     2
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              178
                                                             clus
vv                                                            10Q LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                        6
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       4
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                212
D60V10, binary
                    cls
clus                   0   1
  10Q LOSS MUTATED     4 182
  10Q LOSS WILD-TYPE   9 214
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q LOSS MUTATED      4  182
  10Q LOSS WILD-TYPE    9  214
     clus
vv    10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  NO                 4                  9
  YES              182                214
D60V11, continuous
D60V12, continuous
                    vv
clus                  R0  R1  R2  RX
  10Q LOSS MUTATED   157   2   0   7
  10Q LOSS WILD-TYPE 175   6   4  11
D60V13, multiclass
    clus
vv   10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  R0              157                175
  R1                2                  6
  R2                0                  4
  RX                7                 11

Clustering(61) Variable = 11P LOSS MUTATION ANALYSIS
D61V1, survival
                    sevent
clus2                  0   1
  11P LOSS MUTATED    87  49
  11P LOSS WILD-TYPE 157  90
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
               136                247 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                49                 90 
$`11P LOSS MUTATED`
TCGA-18-3406 TCGA-18-3409 TCGA-18-3412 TCGA-18-3414 TCGA-18-3417 TCGA-18-3421 
       12.16        79.46        11.34        13.02        24.92        43.76 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1080 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 
       46.88        60.89       122.43       119.80         8.78        31.63 
TCGA-21-5786 TCGA-21-5787 TCGA-22-1002 TCGA-22-1017 TCGA-22-4593 TCGA-22-4596 
       33.93        10.82         4.31        48.82        35.08         0.56 
TCGA-22-4601 TCGA-22-5471 TCGA-22-5473 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 
       34.75        31.73        63.55        44.25         0.79        54.28 
TCGA-22-5481 TCGA-22-5483 TCGA-22-A5C4 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       79.20        18.84         0.95       114.05        97.94        43.10 
TCGA-33-4587 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2605 TCGA-34-5231 
       54.44        19.76         2.63        61.61        28.96        50.24 
TCGA-34-5232 TCGA-34-5236 TCGA-34-5928 TCGA-34-5929 TCGA-37-3789 TCGA-37-4130 
       67.79         9.07        18.15         4.96         0.43         8.12 
TCGA-37-4132 TCGA-37-4135 TCGA-37-4141 TCGA-39-5011 TCGA-39-5019 TCGA-39-5021 
        7.46         6.81         0.39        47.80        44.75        68.58 
TCGA-39-5022 TCGA-39-5031 TCGA-39-5035 TCGA-39-5037 TCGA-43-2581 TCGA-43-3920 
       55.20        27.39        15.58        35.70        38.66        33.11 
TCGA-43-6143 TCGA-43-7657 TCGA-43-7658 TCGA-43-A56V TCGA-46-3768 TCGA-46-6025 
       12.36         7.76        66.51        12.03         9.99        10.65 
TCGA-51-4079 TCGA-56-7221 TCGA-56-7222 TCGA-56-7579 TCGA-56-7580 TCGA-56-7822 
        0.39         0.99         0.43         1.45         1.32         0.03 
TCGA-56-8503 TCGA-56-8504 TCGA-56-8624 TCGA-56-8628 TCGA-56-8629 TCGA-56-A4BW 
        1.35         5.85         1.18         0.53         1.12         0.07 
TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DR TCGA-58-8387 TCGA-58-8390 TCGA-60-2695 
        0.82         0.13         0.13        13.25        29.95        21.11 
TCGA-60-2698 TCGA-60-2708 TCGA-60-2712 TCGA-60-2714 TCGA-60-2720 TCGA-60-2721 
       10.22        80.45         9.01        50.33         3.19        32.32 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2726 TCGA-66-2742 TCGA-66-2758 TCGA-66-2759 
       35.90        23.57        11.77        21.07        21.01        25.05 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2771 TCGA-66-2773 TCGA-66-2780 TCGA-66-2781 
        2.01         2.01        19.00         3.02        12.03         3.98 
TCGA-66-2782 TCGA-66-2793 TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 TCGA-68-A59J 
       12.00        10.06         6.94         8.02         3.16         3.42 
TCGA-77-6844 TCGA-77-7139 TCGA-77-7141 TCGA-77-7338 TCGA-77-7465 TCGA-77-8008 
       75.09        89.98         0.49         0.16        15.75        86.76 
TCGA-77-8009 TCGA-77-8133 TCGA-77-8138 TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 
       53.95        53.92        17.72        11.54        26.40        27.39 
TCGA-77-8148 TCGA-77-8150 TCGA-77-8153 TCGA-85-6561 TCGA-85-7696 TCGA-85-7699 
        9.63        54.41        55.36        12.99         0.59         0.03 
TCGA-85-7843 TCGA-85-7950 TCGA-85-8048 TCGA-85-8277 TCGA-85-8288 TCGA-85-8352 
        1.15         1.97         0.85         0.36         1.78         2.20 
TCGA-85-8353 TCGA-85-8479 TCGA-85-A4QR TCGA-90-7964 TCGA-96-7545 TCGA-98-8020 
        1.78         0.72         0.82        14.07        44.19         2.76 
TCGA-98-8023 TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HG 
       10.13         2.73        56.61        50.89 

$`11P LOSS WILD-TYPE`
TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3415 TCGA-18-3416 
        4.47        81.01         4.80        46.52        59.51        28.34 
TCGA-18-3419 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
        1.64         6.15         2.79        90.54         3.02        27.19 
TCGA-21-1070 TCGA-21-1072 TCGA-21-1075 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 
      119.54        99.16        70.16        34.78        15.58        31.73 
TCGA-21-1081 TCGA-21-5783 TCGA-21-5784 TCGA-21-A5DI TCGA-22-0940 TCGA-22-0944 
        9.34        88.11        41.69        32.19        19.99         7.33 
TCGA-22-1000 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 
       14.93        64.21         1.74        14.10        27.02        20.48 
TCGA-22-4594 TCGA-22-4595 TCGA-22-4599 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 
       48.33        24.13        38.17        13.12        32.02        19.30 
TCGA-22-4609 TCGA-22-4613 TCGA-22-5472 TCGA-22-5474 TCGA-22-5480 TCGA-22-5482 
        9.57        11.77        64.93        14.63        71.34        11.74 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4566 
       30.12        62.86        56.32        16.64         7.63       173.82 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4589 TCGA-33-6738 TCGA-34-2604 
      103.53       141.34        14.07        10.82        27.02        31.50 
TCGA-34-2608 TCGA-34-2609 TCGA-34-5234 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 
       32.88        31.27        56.38        23.24        12.00        14.07 
TCGA-34-5927 TCGA-34-7107 TCGA-37-3783 TCGA-37-3792 TCGA-37-4129 TCGA-37-4133 
       30.94         1.12         3.95         0.39         6.58         7.82 
TCGA-37-5819 TCGA-39-5016 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
        3.39        74.07        70.03        60.79         1.71        24.33 
TCGA-39-5030 TCGA-39-5034 TCGA-39-5036 TCGA-39-5039 TCGA-39-5040 TCGA-43-2576 
        1.94        36.39        35.64        17.88        17.06        40.21 
TCGA-43-2578 TCGA-43-3394 TCGA-43-5668 TCGA-43-5670 TCGA-43-6647 TCGA-43-6770 
       22.49        27.02        11.47        18.05        24.89        10.19 
TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 
        5.46         3.81         6.97        13.38        11.77         2.93 
TCGA-43-A474 TCGA-43-A475 TCGA-43-A56U TCGA-46-6026 TCGA-51-4080 TCGA-51-4081 
       11.61         9.73        14.20        13.91         0.39        29.95 
TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 
       17.79         5.46        30.35         8.75        27.45        28.96 
TCGA-56-5897 TCGA-56-5898 TCGA-56-6545 TCGA-56-6546 TCGA-56-7223 TCGA-56-7582 
        0.10        18.25         2.04         0.62         0.99         0.85 
TCGA-56-7730 TCGA-56-8622 TCGA-56-8625 TCGA-56-8626 TCGA-56-A49D TCGA-56-A4BX 
        0.20         1.81         2.07         0.56         1.25         1.51 
TCGA-56-A4BY TCGA-56-A5DS TCGA-58-8386 TCGA-58-8388 TCGA-58-8391 TCGA-58-8392 
        0.99         0.26         0.03        12.43        71.24        16.47 
TCGA-58-8393 TCGA-58-A46J TCGA-58-A46K TCGA-58-A46L TCGA-58-A46M TCGA-58-A46N 
       34.78        64.87        34.36        36.59        23.24        17.75 
TCGA-60-2696 TCGA-60-2697 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 
        3.58        12.23        96.82        37.94        92.71        21.73 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2713 TCGA-60-2715 TCGA-60-2716 
       49.48        66.54        41.42        56.91        35.34        48.49 
TCGA-60-2719 TCGA-60-2722 TCGA-60-2725 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 
       42.64        29.85        26.83        16.96        43.10         2.01 
TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 
        0.99         1.02         2.01         0.92         0.99         0.99 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2769 TCGA-66-2770 TCGA-66-2777 
        0.99         2.01         1.02         7.07        23.01         2.01 
TCGA-66-2778 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
       19.00        24.95         1.97        25.97        40.01        22.98 
TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2794 TCGA-66-2795 
        4.04        22.98         5.03        30.02        54.08         4.01 
TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-A59I TCGA-77-6842 TCGA-77-6843 
       49.05         2.73         6.64         3.98        29.56        73.12 
TCGA-77-6845 TCGA-77-7138 TCGA-77-7140 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 
       23.28        11.18        20.78        42.28        70.13       106.95 
TCGA-77-7463 TCGA-77-8007 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8136 
       46.78         6.51        37.81        82.92        12.59        39.09 
TCGA-77-8139 TCGA-77-8145 TCGA-77-8154 TCGA-77-8156 TCGA-77-A5FZ TCGA-77-A5G3 
      104.09         6.97        35.90         0.33       126.18       117.57 
TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6175 TCGA-85-6560 TCGA-85-6798 TCGA-85-7697 
       30.81        23.44         9.67         0.36         1.12         0.33 
TCGA-85-7698 TCGA-85-7844 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 
        1.61         1.25         1.97         0.53        16.77        14.07 
TCGA-85-8072 TCGA-85-8276 TCGA-85-8287 TCGA-85-8350 TCGA-85-8351 TCGA-85-8354 
       16.87         0.43         1.45         1.97         1.81         2.01 
TCGA-85-8355 TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 TCGA-85-8666 
        2.01         0.69        14.63        13.94         0.10        15.62 
TCGA-85-A4CL TCGA-85-A50M TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 TCGA-90-7766 
        0.49         0.62         0.79         0.43        24.92         9.50 
TCGA-90-7767 TCGA-90-7769 TCGA-90-A4ED TCGA-90-A4EE TCGA-92-7340 TCGA-92-7341 
        2.93        11.77         8.02        10.88         2.70         3.48 
TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 
        4.01         5.26         2.30         2.86         0.16        11.70 
TCGA-96-7544 TCGA-96-8169 TCGA-96-8170 TCGA-96-A4JK TCGA-96-A4JL TCGA-98-7454 
       39.88         6.21         6.94         8.98         6.02         8.42 
TCGA-98-8021 TCGA-98-8022 TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-L3-A524 TCGA-LA-A446 
       13.58         7.36         7.30         1.15        14.76         1.18 
TCGA-NC-A5HI 
       37.32 

  11P LOSS MUTATED 11P LOSS WILD-TYPE 
              0.03               0.03 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
            122.43             173.82 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
             12.26              14.07 
[1] "0.0 - 122.4 (12.3)" "0.0 - 173.8 (14.1)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
  "11P LOSS MUTATED"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56U 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-43-A56V         TCGA-46-3768         TCGA-46-6025 
  "11P LOSS MUTATED"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-46-6026         TCGA-51-4079         TCGA-51-4080 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-51-4081         TCGA-52-7622         TCGA-52-7809 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-52-7810         TCGA-52-7811         TCGA-52-7812 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-5898 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
  "11P LOSS MUTATED"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-56-A49D         TCGA-56-A4BW         TCGA-56-A4BX 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-56-A4BY         TCGA-56-A4ZJ         TCGA-56-A4ZK 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-56-A5DR         TCGA-56-A5DS         TCGA-58-8386 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-68-8250         TCGA-68-8251         TCGA-68-A59I 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-68-A59J         TCGA-77-6842         TCGA-77-6843 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
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        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
  "11P LOSS MUTATED"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56U 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-43-A56V         TCGA-46-3768         TCGA-46-6025 
  "11P LOSS MUTATED"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-46-6026         TCGA-51-4079         TCGA-51-4080 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-51-4081         TCGA-52-7622         TCGA-52-7809 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-52-7810         TCGA-52-7811         TCGA-52-7812 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-5898 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
  "11P LOSS MUTATED"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-56-A49D         TCGA-56-A4BW         TCGA-56-A4BX 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-56-A4BY         TCGA-56-A4ZJ         TCGA-56-A4ZK 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-56-A5DR         TCGA-56-A5DS         TCGA-58-8386 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-68-8250         TCGA-68-8251         TCGA-68-A59I 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-68-A59J         TCGA-77-6842         TCGA-77-6843 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-77-8150         TCGA-77-8153         TCGA-77-8154 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5FZ         TCGA-77-A5G3 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-77-A5GB         TCGA-77-A5GH         TCGA-85-6175 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
[1] "hr=" "1"  
D61V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  11P LOSS MUTATED         0       21       51        0        16        21
  11P LOSS WILD-TYPE       1       48       85        1        34        49
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  11P LOSS MUTATED           21          4        4
  11P LOSS WILD-TYPE         33         16        1
D61V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  11P LOSS MUTATED    30  90  16   5
  11P LOSS WILD-TYPE  65 160  29  14
D61V4, multiclass
    clus
vv   11P LOSS MUTATED 11P LOSS WILD-TYPE
  T1               30                 65
  T2               90                160
  T3               16                 29
  T4                5                 14
                    vv
clus                  N0  N1  N2  N3
  11P LOSS MUTATED    89  42   8   1
  11P LOSS WILD-TYPE 166  67  26   4
D61V5, multiclass
    clus
vv   11P LOSS MUTATED 11P LOSS WILD-TYPE
  N0               89                166
  N1               42                 67
  N2                8                 26
  N3                1                  4
                    vv
clus                  M0  M1  MX
  11P LOSS MUTATED   120   4  13
  11P LOSS WILD-TYPE 229   1  36
D61V6, multiclass
    clus
vv   11P LOSS MUTATED 11P LOSS WILD-TYPE
  M0              120                229
  M1                4                  1
  MX               13                 36
D61V7, binary
                    cls
clus                   0   1
  11P LOSS MUTATED    35 106
  11P LOSS WILD-TYPE  69 199
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P LOSS MUTATED     35  106
  11P LOSS WILD-TYPE   69  199
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  FEMALE               35                 69
  MALE                106                199
D61V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  11P LOSS MUTATED                                       4
  11P LOSS WILD-TYPE                                     8
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  11P LOSS MUTATED                                        1
  11P LOSS WILD-TYPE                                      5
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  11P LOSS MUTATED                                         1
  11P LOSS WILD-TYPE                                       0
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  11P LOSS MUTATED                                                           135
  11P LOSS WILD-TYPE                                                         255
D61V9, multiclass
                                                             clus
vv                                                            11P LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      4
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              135
                                                             clus
vv                                                            11P LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                        8
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                255
D61V10, binary
                    cls
clus                   0   1
  11P LOSS MUTATED     5 136
  11P LOSS WILD-TYPE   8 260
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P LOSS MUTATED      5  136
  11P LOSS WILD-TYPE    8  260
     clus
vv    11P LOSS MUTATED 11P LOSS WILD-TYPE
  NO                 5                  8
  YES              136                260
D61V11, continuous
D61V12, continuous
                    vv
clus                  R0  R1  R2  RX
  11P LOSS MUTATED   118   2   1   4
  11P LOSS WILD-TYPE 214   6   3  14
D61V13, multiclass
    clus
vv   11P LOSS MUTATED 11P LOSS WILD-TYPE
  R0              118                214
  R1                2                  6
  R2                1                  3
  RX                4                 14

Clustering(62) Variable = 11Q LOSS MUTATION ANALYSIS
D62V1, survival
                    sevent
clus2                  0   1
  11Q LOSS MUTATED    75  39
  11Q LOSS WILD-TYPE 169 100
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
               114                269 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                39                100 
$`11Q LOSS MUTATED`
TCGA-18-3406 TCGA-18-3409 TCGA-18-3412 TCGA-18-3414 TCGA-18-3417 TCGA-18-3421 
       12.16        79.46        11.34        13.02        24.92        43.76 
TCGA-21-1076 TCGA-21-1080 TCGA-21-1083 TCGA-21-5783 TCGA-21-5787 TCGA-22-1002 
       60.89       122.43         8.78        88.11        10.82         4.31 
TCGA-22-1011 TCGA-22-4593 TCGA-22-4601 TCGA-22-5473 TCGA-22-5477 TCGA-22-5478 
        1.74        35.08        34.75        63.55        44.25         0.79 
TCGA-33-4533 TCGA-33-4589 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2605 
      114.05        10.82        19.76         2.63        61.61        28.96 
TCGA-34-5232 TCGA-34-5236 TCGA-34-5928 TCGA-37-3789 TCGA-37-4130 TCGA-39-5016 
       67.79         9.07        18.15         0.43         8.12        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5027 TCGA-39-5031 TCGA-39-5037 
       44.75        68.58        55.20        60.79        27.39        35.70 
TCGA-43-2581 TCGA-43-3920 TCGA-43-7657 TCGA-43-7658 TCGA-43-8116 TCGA-43-A474 
       38.66        33.11         7.76        66.51        11.77        11.61 
TCGA-43-A56V TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-52-7809 
       12.03         9.99        10.65        13.91         0.39         5.46 
TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7580 TCGA-56-7822 TCGA-56-8504 
        0.99         0.43         0.99         1.32         0.03         5.85 
TCGA-56-8624 TCGA-56-8629 TCGA-56-A4BW TCGA-56-A4BX TCGA-56-A4ZK TCGA-58-8387 
        1.18         1.12         0.07         1.51         0.13        13.25 
TCGA-58-8390 TCGA-60-2695 TCGA-60-2698 TCGA-60-2708 TCGA-60-2712 TCGA-60-2714 
       29.95        21.11        10.22        80.45         9.01        50.33 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2725 TCGA-60-2726 TCGA-66-2758 TCGA-66-2767 
       29.85        35.90        26.83        11.77        21.01         2.01 
TCGA-66-2768 TCGA-66-2790 TCGA-66-2793 TCGA-68-8250 TCGA-68-8251 TCGA-68-A59J 
        2.01        22.98        10.06         8.02         3.16         3.42 
TCGA-77-7139 TCGA-77-7338 TCGA-77-7465 TCGA-77-8008 TCGA-77-8009 TCGA-77-8130 
       89.98         0.16        15.75        86.76        53.95        82.92 
TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8143 TCGA-77-8144 TCGA-77-8148 
       53.92        39.09        17.72        26.40        27.39         9.63 
TCGA-77-8150 TCGA-77-8153 TCGA-77-A5G3 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 
       54.41        55.36       117.57        12.99         1.12         0.59 
TCGA-85-7699 TCGA-85-8048 TCGA-85-8072 TCGA-85-8277 TCGA-85-8352 TCGA-85-8479 
        0.03         0.85        16.87         0.36         2.20         0.72 
TCGA-85-8664 TCGA-85-A4QR TCGA-90-7766 TCGA-90-7964 TCGA-92-7341 TCGA-96-7545 
        0.10         0.82         9.50        14.07         3.48        44.19 
TCGA-96-A4JL TCGA-98-8020 TCGA-98-8023 TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HG 
        6.02         2.76        10.13         2.73        56.61        50.89 

$`11Q LOSS WILD-TYPE`
TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3415 TCGA-18-3416 
        4.47        81.01         4.80        46.52        59.51        28.34 
TCGA-18-3419 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
        1.64         6.15         2.79        90.54         3.02        27.19 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1077 TCGA-21-1078 
      119.54        46.88        99.16        70.16        34.78        15.58 
TCGA-21-1079 TCGA-21-1081 TCGA-21-1082 TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 
       31.73         9.34       119.80        31.63        41.69        33.93 
TCGA-21-A5DI TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1005 TCGA-22-1012 
       32.19        19.99         7.33        14.93        64.21        14.10 
TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 
       27.02        48.82        20.48        48.33        24.13         0.56 
TCGA-22-4599 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 
       38.17        13.12        32.02        19.30         9.57        11.77 
TCGA-22-5471 TCGA-22-5472 TCGA-22-5474 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 
       31.73        64.93        14.63        54.28        71.34        79.20 
TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 
       11.74        18.84        30.12        62.86        56.32        16.64 
TCGA-22-A5C4 TCGA-33-4532 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 
        0.95         7.63        97.94        43.10       173.82       103.53 
TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-33-6738 TCGA-34-2604 TCGA-34-2608 
      141.34        14.07        54.44        27.02        31.50        32.88 
TCGA-34-2609 TCGA-34-5231 TCGA-34-5234 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 
       31.27        50.24        56.38        23.24        12.00        14.07 
TCGA-34-5927 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3792 TCGA-37-4129 
       30.94         4.96         1.12         3.95         0.39         6.58 
TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 
        7.46         7.82         6.81         0.39         3.39        47.80 
TCGA-39-5024 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5034 TCGA-39-5035 
       70.03         1.71        24.33         1.94        36.39        15.58 
TCGA-39-5036 TCGA-39-5039 TCGA-39-5040 TCGA-43-2576 TCGA-43-2578 TCGA-43-3394 
       35.64        17.88        17.06        40.21        22.49        27.02 
TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 
       11.47        18.05        12.36        24.89        10.19         5.46 
TCGA-43-6773 TCGA-43-7656 TCGA-43-8115 TCGA-43-8118 TCGA-43-A475 TCGA-43-A56U 
        3.81         6.97        13.38         2.93         9.73        14.20 
TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 
        0.39        29.95        17.79        30.35         8.75        27.45 
TCGA-56-1622 TCGA-56-5897 TCGA-56-5898 TCGA-56-6545 TCGA-56-6546 TCGA-56-7579 
       28.96         0.10        18.25         2.04         0.62         1.45 
TCGA-56-7582 TCGA-56-7730 TCGA-56-8503 TCGA-56-8622 TCGA-56-8625 TCGA-56-8626 
        0.85         0.20         1.35         1.81         2.07         0.56 
TCGA-56-8628 TCGA-56-A49D TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A5DR TCGA-56-A5DS 
        0.53         1.25         0.99         0.82         0.13         0.26 
TCGA-58-8386 TCGA-58-8388 TCGA-58-8391 TCGA-58-8392 TCGA-58-8393 TCGA-58-A46J 
        0.03        12.43        71.24        16.47        34.78        64.87 
TCGA-58-A46K TCGA-58-A46L TCGA-58-A46M TCGA-58-A46N TCGA-60-2696 TCGA-60-2697 
       34.36        36.59        23.24        17.75         3.58        12.23 
TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2709 TCGA-60-2710 
       96.82        37.94        92.71        21.73        49.48        66.54 
TCGA-60-2711 TCGA-60-2713 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 
       41.42        56.91        35.34        48.49        42.64         3.19 
TCGA-60-2721 TCGA-60-2724 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 
       32.32        23.57        16.96        43.10         2.01        21.07 
TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 
        0.99         1.02         2.01         0.92         0.99         0.99 
TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2769 TCGA-66-2770 
       25.05         0.99         2.01         1.02         7.07        23.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       19.00         3.02         2.01        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
       12.00        24.95         1.97        25.97        40.01        22.98 
TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        4.04         5.03        30.02        54.08         4.01        49.05 
TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-A59I TCGA-77-6842 TCGA-77-6843 
        2.73         6.64         6.94         3.98        29.56        73.12 
TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 
       75.09        23.28        11.18        20.78         0.49        42.28 
TCGA-77-7335 TCGA-77-7337 TCGA-77-7463 TCGA-77-8007 TCGA-77-8128 TCGA-77-8131 
       70.13       106.95        46.78         6.51        37.81        12.59 
TCGA-77-8139 TCGA-77-8140 TCGA-77-8145 TCGA-77-8154 TCGA-77-8156 TCGA-77-A5FZ 
      104.09        11.54         6.97        35.90         0.33       126.18 
TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6175 TCGA-85-6560 TCGA-85-7697 TCGA-85-7698 
       30.81        23.44         9.67         0.36         0.33         1.61 
TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 
        1.15         1.25         1.97         1.97         0.53        16.77 
TCGA-85-8071 TCGA-85-8276 TCGA-85-8287 TCGA-85-8288 TCGA-85-8350 TCGA-85-8351 
       14.07         0.43         1.45         1.78         1.97         1.81 
TCGA-85-8353 TCGA-85-8354 TCGA-85-8355 TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 
        1.78         2.01         2.01         0.69        14.63        13.94 
TCGA-85-8666 TCGA-85-A4CL TCGA-85-A50M TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 
       15.62         0.49         0.62         0.79         0.43        24.92 
TCGA-90-7767 TCGA-90-7769 TCGA-90-A4ED TCGA-90-A4EE TCGA-92-7340 TCGA-92-8063 
        2.93        11.77         8.02        10.88         2.70         4.01 
TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 
        5.26         2.30         2.86         0.16        11.70        39.88 
TCGA-96-8169 TCGA-96-8170 TCGA-96-A4JK TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 
        6.21         6.94         8.98         8.42        13.58         7.36 
TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-L3-A524 TCGA-LA-A446 TCGA-NC-A5HI 
        7.30         1.15        14.76         1.18        37.32 

  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
              0.03               0.03 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
            122.43             173.82 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
            12.575             14.070 
[1] "0.0 - 122.4 (12.6)" "0.0 - 173.8 (14.1)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56U 
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"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-68-A59I 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-68-A59J         TCGA-77-6842         TCGA-77-6843 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-77-8150         TCGA-77-8153         TCGA-77-8154 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5FZ         TCGA-77-A5G3 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-77-A5GB         TCGA-77-A5GH         TCGA-85-6175 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D62V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  11Q LOSS MUTATED         0       15       39        0        15        23
  11Q LOSS WILD-TYPE       1       54       97        1        35        47
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  11Q LOSS MUTATED           16          4        2
  11Q LOSS WILD-TYPE         38         16        3
D62V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  11Q LOSS MUTATED    21  79  12   5
  11Q LOSS WILD-TYPE  74 171  33  14
D62V4, multiclass
    clus
vv   11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  T1               21                 74
  T2               79                171
  T3               12                 33
  T4                5                 14
                    vv
clus                  N0  N1  N2  N3
  11Q LOSS MUTATED    67  42   6   1
  11Q LOSS WILD-TYPE 188  67  28   4
D62V5, multiclass
    clus
vv   11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  N0               67                188
  N1               42                 67
  N2                6                 28
  N3                1                  4
                    vv
clus                  M0  M1  MX
  11Q LOSS MUTATED    98   2  13
  11Q LOSS WILD-TYPE 251   3  36
D62V6, multiclass
    clus
vv   11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  M0               98                251
  M1                2                  3
  MX               13                 36
D62V7, binary
                    cls
clus                   0   1
  11Q LOSS MUTATED    24  93
  11Q LOSS WILD-TYPE  80 212
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q LOSS MUTATED     24   93
  11Q LOSS WILD-TYPE   80  212
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  FEMALE               24                 80
  MALE                 93                212
D62V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  11Q LOSS MUTATED                                       5
  11Q LOSS WILD-TYPE                                     7
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  11Q LOSS MUTATED                                        1
  11Q LOSS WILD-TYPE                                      5
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  11Q LOSS MUTATED                                         0
  11Q LOSS WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  11Q LOSS MUTATED                                                           111
  11Q LOSS WILD-TYPE                                                         279
D62V9, multiclass
                                                             clus
vv                                                            11Q LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      5
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              111
                                                             clus
vv                                                            11Q LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                        7
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                279
D62V10, binary
                    cls
clus                   0   1
  11Q LOSS MUTATED     4 113
  11Q LOSS WILD-TYPE   9 283
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q LOSS MUTATED      4  113
  11Q LOSS WILD-TYPE    9  283
     clus
vv    11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  NO                 4                  9
  YES              113                283
D62V11, continuous
D62V12, continuous
                    vv
clus                  R0  R1  R2  RX
  11Q LOSS MUTATED    98   2   1   1
  11Q LOSS WILD-TYPE 234   6   3  17
D62V13, multiclass
    clus
vv   11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  R0               98                234
  R1                2                  6
  R2                1                  3
  RX                1                 17

Clustering(63) Variable = 12P LOSS MUTATION ANALYSIS
D63V1, survival
                    sevent
clus2                  0   1
  12P LOSS MUTATED    19  11
  12P LOSS WILD-TYPE 225 128
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                30                353 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                11                128 
$`12P LOSS MUTATED`
TCGA-18-3407 TCGA-22-1016 TCGA-22-5478 TCGA-33-4533 TCGA-33-4587 TCGA-34-2604 
        4.47        27.02         0.79       114.05        54.44        31.50 
TCGA-37-4129 TCGA-37-4130 TCGA-37-4141 TCGA-39-5011 TCGA-43-2581 TCGA-43-5668 
        6.58         8.12         0.39        47.80        38.66        11.47 
TCGA-43-6143 TCGA-43-8118 TCGA-56-5898 TCGA-56-7579 TCGA-56-8624 TCGA-56-A49D 
       12.36         2.93        18.25         1.45         1.18         1.25 
TCGA-56-A4ZK TCGA-60-2722 TCGA-66-2773 TCGA-77-7138 TCGA-77-8008 TCGA-77-8150 
        0.13        29.85         3.02        11.18        86.76        54.41 
TCGA-77-8153 TCGA-85-6798 TCGA-85-8353 TCGA-85-8479 TCGA-85-A50M TCGA-90-A4ED 
       55.36         1.12         1.78         0.72         0.62         8.02 

$`12P LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16        81.01        79.46         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.64        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.54         3.02        27.19       119.54 
TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 
       46.88        99.16        70.16        60.89        34.78        15.58 
TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 
       31.73       122.43         9.34       119.80         8.78        31.63 
TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-21-A5DI TCGA-22-0940 
       88.11        41.69        33.93        10.82        32.19        19.99 
TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 
        7.33        14.93         4.31        64.21         1.74        14.10 
TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 
       48.82        20.48        35.08        48.33        24.13         0.56 
TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 
       38.17        34.75        13.12        32.02        19.30         9.57 
TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 
       11.77        31.73        64.93        63.55        14.63        44.25 
TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 
       54.28        71.34        79.20        11.74        18.84        30.12 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-22-A5C4 TCGA-33-4532 TCGA-33-4538 
       62.86        56.32        16.64         0.95         7.63        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4589 
       43.10       173.82       103.53       141.34        14.07        10.82 
TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2605 TCGA-34-2608 
       19.76        27.02         2.63        61.61        28.96        32.88 
TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       31.27        50.24        67.79        56.38         9.07        23.24 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 
       12.00        14.07        30.94        18.15         4.96         1.12 
TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 
        3.95         0.43         0.39         7.46         7.82         6.81 
TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
        3.39        74.07        44.75        68.58        55.20        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 
       60.79         1.71        24.33         1.94        27.39        36.39 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-39-5040 TCGA-43-2576 
       15.58        35.64        35.70        17.88        17.06        40.21 
TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5670 TCGA-43-6647 TCGA-43-6770 
       22.49        27.02        33.11        18.05        24.89        10.19 
TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 
        5.46         3.81         6.97         7.76        66.51        13.38 
TCGA-43-8116 TCGA-43-A474 TCGA-43-A475 TCGA-43-A56U TCGA-43-A56V TCGA-46-3768 
       11.77        11.61         9.73        14.20        12.03         9.99 
TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 
       10.65        13.91         0.39         0.39        29.95        17.79 
TCGA-52-7809 TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 
        5.46        30.35         8.75        27.45        28.96         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7580 
        2.04         0.62         0.99         0.43         0.99         1.32 
TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 TCGA-56-8503 TCGA-56-8504 TCGA-56-8622 
        0.85         0.20         0.03         1.35         5.85         1.81 
TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 TCGA-56-A4BW TCGA-56-A4BX 
        2.07         0.56         0.53         1.12         0.07         1.51 
TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A5DR TCGA-56-A5DS TCGA-58-8386 TCGA-58-8387 
        0.99         0.82         0.13         0.26         0.03        13.25 
TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 TCGA-58-8393 TCGA-58-A46J 
       12.43        29.95        71.24        16.47        34.78        64.87 
TCGA-58-A46K TCGA-58-A46L TCGA-58-A46M TCGA-58-A46N TCGA-60-2695 TCGA-60-2696 
       34.36        36.59        23.24        17.75        21.11         3.58 
TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 
       12.23        10.22        96.82        37.94        92.71        21.73 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 
       80.45        49.48        66.54        41.42         9.01        56.91 
TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
       50.33        35.34        48.49        42.64         3.19        32.32 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 
       35.90        23.57        26.83        11.77        16.96        43.10 
TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 
        2.01        21.07         0.99         1.02         2.01         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        0.99         0.99        21.01        25.05         0.99         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 
        1.02         2.01         2.01         7.07        23.01        19.00 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        2.01        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 
        1.97        25.97        40.01        22.98         4.04        22.98 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        5.03        30.02        10.06        54.08         4.01        49.05 
TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 TCGA-68-A59I 
        2.73         6.64         6.94         8.02         3.16         3.98 
TCGA-68-A59J TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7139 
        3.42        29.56        73.12        75.09        23.28        89.98 
TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 
       20.78         0.49        42.28        70.13       106.95         0.16 
TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 TCGA-77-8009 TCGA-77-8128 TCGA-77-8130 
       46.78        15.75         6.51        53.95        37.81        82.92 
TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 
       12.59        53.92        39.09        17.72       104.09        11.54 
TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8154 TCGA-77-8156 
       26.40        27.39         6.97         9.63        35.90         0.33 
TCGA-77-A5FZ TCGA-77-A5G3 TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6175 TCGA-85-6560 
      126.18       117.57        30.81        23.44         9.67         0.36 
TCGA-85-6561 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 
       12.99         0.59         0.33         1.61         0.03         1.15 
TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 
        1.25         1.97         0.85         1.97         0.53        16.77 
TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 TCGA-85-8288 
       14.07        16.87         0.43         0.36         1.45         1.78 
TCGA-85-8350 TCGA-85-8351 TCGA-85-8352 TCGA-85-8354 TCGA-85-8355 TCGA-85-8481 
        1.97         1.81         2.20         2.01         2.01         0.69 
TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL TCGA-85-A4QR 
       14.63        13.94         0.10        15.62         0.49         0.82 
TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 
        0.79         0.43        24.92         9.50         2.93        11.77 
TCGA-90-7964 TCGA-90-A4EE TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 
       14.07        10.88         2.70         3.48         4.01         5.26 
TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 TCGA-96-7545 
        2.30         2.86         0.16        11.70        39.88        44.19 
TCGA-96-8169 TCGA-96-8170 TCGA-96-A4JK TCGA-96-A4JL TCGA-98-7454 TCGA-98-8020 
        6.21         6.94         8.98         6.02         8.42         2.76 
TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-L3-A524 
       13.58         7.36        10.13         7.30         1.15        14.76 
TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HG TCGA-NC-A5HI 
        1.18         2.73        56.61        50.89        37.32 

  12P LOSS MUTATED 12P LOSS WILD-TYPE 
              0.13               0.03 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
            114.05             173.82 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
              8.07              14.07 
[1] "0.1 - 114.0 (8.1)"  "0.0 - 173.8 (14.1)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
  "12P LOSS MUTATED"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56U 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-43-A56V         TCGA-46-3768         TCGA-46-6025 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-46-6026         TCGA-51-4079         TCGA-51-4080 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-51-4081         TCGA-52-7622         TCGA-52-7809 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-52-7810         TCGA-52-7811         TCGA-52-7812 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-5898 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-56-A49D         TCGA-56-A4BW         TCGA-56-A4BX 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-56-A4BY         TCGA-56-A4ZJ         TCGA-56-A4ZK 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-56-A5DR         TCGA-56-A5DS         TCGA-58-8386 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-68-A59I 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-68-A59J         TCGA-77-6842         TCGA-77-6843 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8153         TCGA-77-8154 
  "12P LOSS MUTATED"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5FZ         TCGA-77-A5G3 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-77-A5GB         TCGA-77-A5GH         TCGA-85-6175 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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  "12P LOSS MUTATED"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
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"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
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"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
  "12P LOSS MUTATED"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56U 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-43-A56V         TCGA-46-3768         TCGA-46-6025 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-46-6026         TCGA-51-4079         TCGA-51-4080 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-51-4081         TCGA-52-7622         TCGA-52-7809 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-52-7810         TCGA-52-7811         TCGA-52-7812 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-5898 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-56-A49D         TCGA-56-A4BW         TCGA-56-A4BX 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-56-A4BY         TCGA-56-A4ZJ         TCGA-56-A4ZK 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-56-A5DR         TCGA-56-A5DS         TCGA-58-8386 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-68-A59I 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-68-A59J         TCGA-77-6842         TCGA-77-6843 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8153         TCGA-77-8154 
  "12P LOSS MUTATED"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5FZ         TCGA-77-A5G3 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-77-A5GB         TCGA-77-A5GH         TCGA-85-6175 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D63V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  12P LOSS MUTATED         0        5       15        0         2         3
  12P LOSS WILD-TYPE       1       64      121        1        48        67
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  12P LOSS MUTATED            5          1        0
  12P LOSS WILD-TYPE         49         19        5
D63V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  12P LOSS MUTATED     8  16   7   0
  12P LOSS WILD-TYPE  87 234  38  19
D63V4, multiclass
    clus
vv   12P LOSS MUTATED 12P LOSS WILD-TYPE
  T1                8                 87
  T2               16                234
  T3                7                 38
  T4                0                 19
                    vv
clus                  N0  N1  N2  N3
  12P LOSS MUTATED    23   7   1   0
  12P LOSS WILD-TYPE 232 102  33   5
D63V5, multiclass
    clus
vv   12P LOSS MUTATED 12P LOSS WILD-TYPE
  N0               23                232
  N1                7                102
  N2                1                 33
  N3                0                  5
                    vv
clus                  M0  M1  MX
  12P LOSS MUTATED    27   0   4
  12P LOSS WILD-TYPE 322   5  45
D63V6, multiclass
    clus
vv   12P LOSS MUTATED 12P LOSS WILD-TYPE
  M0               27                322
  M1                0                  5
  MX                4                 45
D63V7, binary
                    cls
clus                   0   1
  12P LOSS MUTATED    10  21
  12P LOSS WILD-TYPE  94 284
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P LOSS MUTATED     10   21
  12P LOSS WILD-TYPE   94  284
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  FEMALE               10                 94
  MALE                 21                284
D63V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  12P LOSS MUTATED                                       1
  12P LOSS WILD-TYPE                                    11
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  12P LOSS MUTATED                                        1
  12P LOSS WILD-TYPE                                      5
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  12P LOSS MUTATED                                         1
  12P LOSS WILD-TYPE                                       0
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  12P LOSS MUTATED                                                            28
  12P LOSS WILD-TYPE                                                         362
D63V9, multiclass
                                                             clus
vv                                                            12P LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      1
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               28
                                                             clus
vv                                                            12P LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       11
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                362
D63V10, binary
                    cls
clus                   0   1
  12P LOSS MUTATED     0  31
  12P LOSS WILD-TYPE  13 365
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P LOSS MUTATED      0   31
  12P LOSS WILD-TYPE   13  365
     clus
vv    12P LOSS MUTATED 12P LOSS WILD-TYPE
  NO                 0                 13
  YES               31                365
D63V11, continuous
D63V12, continuous
                    vv
clus                  R0  R1  R2  RX
  12P LOSS MUTATED    26   1   0   1
  12P LOSS WILD-TYPE 306   7   4  17
D63V13, multiclass
    clus
vv   12P LOSS MUTATED 12P LOSS WILD-TYPE
  R0               26                306
  R1                1                  7
  R2                0                  4
  RX                1                 17

Clustering(64) Variable = 12Q LOSS MUTATION ANALYSIS
D64V1, survival
                    sevent
clus2                  0   1
  12Q LOSS MUTATED    24  13
  12Q LOSS WILD-TYPE 220 126
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                37                346 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                13                126 
$`12Q LOSS MUTATED`
TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-22-4595 TCGA-22-5478 TCGA-33-4533 
        4.47        81.01        79.46        24.13         0.79       114.05 
TCGA-33-4587 TCGA-34-2604 TCGA-37-4129 TCGA-37-4141 TCGA-43-2581 TCGA-43-5668 
       54.44        31.50         6.58         0.39        38.66        11.47 
TCGA-43-6143 TCGA-43-8118 TCGA-43-A56V TCGA-51-4081 TCGA-52-7810 TCGA-56-5898 
       12.36         2.93        12.03        29.95        30.35        18.25 
TCGA-56-8624 TCGA-56-A49D TCGA-60-2703 TCGA-60-2722 TCGA-60-2723 TCGA-66-2773 
        1.18         1.25        96.82        29.85        35.90         3.02 
TCGA-68-8250 TCGA-77-7138 TCGA-77-8007 TCGA-77-8008 TCGA-77-8131 TCGA-77-8153 
        8.02        11.18         6.51        86.76        12.59        55.36 
TCGA-85-6560 TCGA-85-6798 TCGA-85-7696 TCGA-85-8479 TCGA-85-A50M TCGA-90-A4ED 
        0.36         1.12         0.59         0.72         0.62         8.02 
TCGA-MF-A522 
        2.73 

$`12Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 
       12.16         4.80        46.52        11.34        13.02        59.51 
TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 
       28.34        24.92         1.64        43.76         6.15         2.79 
TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 
       90.54         3.02        27.19       119.54        46.88        99.16 
TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 
       70.16        60.89        34.78        15.58        31.73       122.43 
TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 
        9.34       119.80         8.78        31.63        88.11        41.69 
TCGA-21-5786 TCGA-21-5787 TCGA-21-A5DI TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 
       33.93        10.82        32.19        19.99         7.33        14.93 
TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 
        4.31        64.21         1.74        14.10        27.02        48.82 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 
       20.48        35.08        48.33         0.56        38.17        34.75 
TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 
       13.12        32.02        19.30         9.57        11.77        31.73 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5479 TCGA-22-5480 
       64.93        63.55        14.63        44.25        54.28        71.34 
TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 
       79.20        11.74        18.84        30.12        62.86        56.32 
TCGA-22-5492 TCGA-22-A5C4 TCGA-33-4532 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 
       16.64         0.95         7.63        97.94        43.10       173.82 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 
      103.53       141.34        14.07        10.82        19.76        27.02 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 
        2.63        61.61        28.96        32.88        31.27        50.24 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 
       67.79        56.38         9.07        23.24        12.00        14.07 
TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 
       30.94        18.15         4.96         1.12         3.95         0.43 
TCGA-37-3792 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-5819 
        0.39         8.12         7.46         7.82         6.81         3.39 
TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
       47.80        74.07        44.75        68.58        55.20        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 
       60.79         1.71        24.33         1.94        27.39        36.39 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-39-5040 TCGA-43-2576 
       15.58        35.64        35.70        17.88        17.06        40.21 
TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5670 TCGA-43-6647 TCGA-43-6770 
       22.49        27.02        33.11        18.05        24.89        10.19 
TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 
        5.46         3.81         6.97         7.76        66.51        13.38 
TCGA-43-8116 TCGA-43-A474 TCGA-43-A475 TCGA-43-A56U TCGA-46-3768 TCGA-46-6025 
       11.77        11.61         9.73        14.20         9.99        10.65 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-52-7622 TCGA-52-7809 TCGA-52-7811 
       13.91         0.39         0.39        17.79         5.46         8.75 
TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 
       27.45        28.96         0.10         2.04         0.62         0.99 
TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 
        0.43         0.99         1.45         1.32         0.85         0.20 
TCGA-56-7822 TCGA-56-8503 TCGA-56-8504 TCGA-56-8622 TCGA-56-8625 TCGA-56-8626 
        0.03         1.35         5.85         1.81         2.07         0.56 
TCGA-56-8628 TCGA-56-8629 TCGA-56-A4BW TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A4ZJ 
        0.53         1.12         0.07         1.51         0.99         0.82 
TCGA-56-A4ZK TCGA-56-A5DR TCGA-56-A5DS TCGA-58-8386 TCGA-58-8387 TCGA-58-8388 
        0.13         0.13         0.26         0.03        13.25        12.43 
TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 TCGA-58-8393 TCGA-58-A46J TCGA-58-A46K 
       29.95        71.24        16.47        34.78        64.87        34.36 
TCGA-58-A46L TCGA-58-A46M TCGA-58-A46N TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 
       36.59        23.24        17.75        21.11         3.58        12.23 
TCGA-60-2698 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
       10.22        37.94        92.71        21.73        80.45        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 
       66.54        41.42         9.01        56.91        50.33        35.34 
TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2724 TCGA-60-2725 
       48.49        42.64         3.19        32.32        23.57        26.83 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 
       11.77        16.96        43.10         2.01        21.07         0.99 
TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 
        1.02         2.01         0.92         0.99         0.99        21.01 
TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
       25.05         0.99         2.01         1.02         2.01         2.01 
TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
        7.07        23.01        19.00         2.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 
        3.98        12.00        24.95         1.97        25.97        40.01 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 
       22.98         4.04        22.98         5.03        30.02        10.06 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 
       54.08         4.01        49.05         2.73         6.64         6.94 
TCGA-68-8251 TCGA-68-A59I TCGA-68-A59J TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 
        3.16         3.98         3.42        29.56        73.12        75.09 
TCGA-77-6845 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 
       23.28        89.98        20.78         0.49        42.28        70.13 
TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8009 TCGA-77-8128 
      106.95         0.16        46.78        15.75        53.95        37.81 
TCGA-77-8130 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 
       82.92        53.92        39.09        17.72       104.09        11.54 
TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-77-8154 
       26.40        27.39         6.97         9.63        54.41        35.90 
TCGA-77-8156 TCGA-77-A5FZ TCGA-77-A5G3 TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6175 
        0.33       126.18       117.57        30.81        23.44         9.67 
TCGA-85-6561 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 
       12.99         0.33         1.61         0.03         1.15         1.25 
TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 
        1.97         0.85         1.97         0.53        16.77        14.07 
TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 TCGA-85-8288 TCGA-85-8350 
       16.87         0.43         0.36         1.45         1.78         1.97 
TCGA-85-8351 TCGA-85-8352 TCGA-85-8353 TCGA-85-8354 TCGA-85-8355 TCGA-85-8481 
        1.81         2.20         1.78         2.01         2.01         0.69 
TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL TCGA-85-A4QR 
       14.63        13.94         0.10        15.62         0.49         0.82 
TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 
        0.79         0.43        24.92         9.50         2.93        11.77 
TCGA-90-7964 TCGA-90-A4EE TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 
       14.07        10.88         2.70         3.48         4.01         5.26 
TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 TCGA-96-7545 
        2.30         2.86         0.16        11.70        39.88        44.19 
TCGA-96-8169 TCGA-96-8170 TCGA-96-A4JK TCGA-96-A4JL TCGA-98-7454 TCGA-98-8020 
        6.21         6.94         8.98         6.02         8.42         2.76 
TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-L3-A524 
       13.58         7.36        10.13         7.30         1.15        14.76 
TCGA-LA-A446 TCGA-NC-A5HE TCGA-NC-A5HG TCGA-NC-A5HI 
        1.18        56.61        50.89        37.32 

  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
              0.36               0.03 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
            114.05             173.82 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
            11.470             14.005 
[1] "0.4 - 114.0 (11.5)" "0.0 - 173.8 (14.0)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED"   "12Q LOSS MUTATED" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56U 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-43-A56V         TCGA-46-3768         TCGA-46-6025 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-46-6026         TCGA-51-4079         TCGA-51-4080 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-51-4081         TCGA-52-7622         TCGA-52-7809 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-52-7810         TCGA-52-7811         TCGA-52-7812 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-5898 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-56-A49D         TCGA-56-A4BW         TCGA-56-A4BX 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-56-A4BY         TCGA-56-A4ZJ         TCGA-56-A4ZK 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-56-A5DR         TCGA-56-A5DS         TCGA-58-8386 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED"   "12Q LOSS MUTATED" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
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        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED"   "12Q LOSS MUTATED" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56U 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-43-A56V         TCGA-46-3768         TCGA-46-6025 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-46-6026         TCGA-51-4079         TCGA-51-4080 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-51-4081         TCGA-52-7622         TCGA-52-7809 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-52-7810         TCGA-52-7811         TCGA-52-7812 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-5898 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-56-A49D         TCGA-56-A4BW         TCGA-56-A4BX 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-56-A4BY         TCGA-56-A4ZJ         TCGA-56-A4ZK 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-56-A5DR         TCGA-56-A5DS         TCGA-58-8386 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED"   "12Q LOSS MUTATED" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-68-A59I 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-68-A59J         TCGA-77-6842         TCGA-77-6843 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
  "12Q LOSS MUTATED"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8153         TCGA-77-8154 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5FZ         TCGA-77-A5G3 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-77-A5GB         TCGA-77-A5GH         TCGA-85-6175 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
[1] "hr=" "1"  
D64V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  12Q LOSS MUTATED         0        5       17        0         3         7
  12Q LOSS WILD-TYPE       1       64      119        1        47        63
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  12Q LOSS MUTATED            4          1        0
  12Q LOSS WILD-TYPE         50         19        5
D64V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  12Q LOSS MUTATED    10  22   6   0
  12Q LOSS WILD-TYPE  85 228  39  19
D64V4, multiclass
    clus
vv   12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  T1               10                 85
  T2               22                228
  T3                6                 39
  T4                0                 19
                    vv
clus                  N0  N1  N2  N3
  12Q LOSS MUTATED    26   8   3   0
  12Q LOSS WILD-TYPE 229 101  31   5
D64V5, multiclass
    clus
vv   12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  N0               26                229
  N1                8                101
  N2                3                 31
  N3                0                  5
                    vv
clus                  M0  M1  MX
  12Q LOSS MUTATED    31   0   6
  12Q LOSS WILD-TYPE 318   5  43
D64V6, multiclass
    clus
vv   12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  M0               31                318
  M1                0                  5
  MX                6                 43
D64V7, binary
                    cls
clus                   0   1
  12Q LOSS MUTATED    11  27
  12Q LOSS WILD-TYPE  93 278
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q LOSS MUTATED     11   27
  12Q LOSS WILD-TYPE   93  278
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  FEMALE               11                 93
  MALE                 27                278
D64V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  12Q LOSS MUTATED                                       2
  12Q LOSS WILD-TYPE                                    10
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  12Q LOSS MUTATED                                        1
  12Q LOSS WILD-TYPE                                      5
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  12Q LOSS MUTATED                                         1
  12Q LOSS WILD-TYPE                                       0
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  12Q LOSS MUTATED                                                            34
  12Q LOSS WILD-TYPE                                                         356
D64V9, multiclass
                                                             clus
vv                                                            12Q LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      2
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               34
                                                             clus
vv                                                            12Q LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       10
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                356
D64V10, binary
                    cls
clus                   0   1
  12Q LOSS MUTATED     1  37
  12Q LOSS WILD-TYPE  12 359
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q LOSS MUTATED      1   37
  12Q LOSS WILD-TYPE   12  359
     clus
vv    12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  NO                 1                 12
  YES               37                359
D64V11, continuous
D64V12, continuous
                    vv
clus                  R0  R1  R2  RX
  12Q LOSS MUTATED    30   0   0   1
  12Q LOSS WILD-TYPE 302   8   4  17
D64V13, multiclass
    clus
vv   12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  R0               30                302
  R1                0                  8
  R2                0                  4
  RX                1                 17

Clustering(65) Variable = 13Q LOSS MUTATION ANALYSIS
D65V1, survival
                    sevent
clus2                  0   1
  13Q LOSS MUTATED   150  82
  13Q LOSS WILD-TYPE  94  57
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
               232                151 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                82                 57 
$`13Q LOSS MUTATED`
TCGA-18-3409 TCGA-18-3410 TCGA-18-3415 TCGA-18-3416 TCGA-18-3419 TCGA-18-3421 
       79.46         4.80        59.51        28.34         1.64        43.76 
TCGA-18-4083 TCGA-18-4721 TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 
        6.15        90.54       119.54        46.88        99.16        70.16 
TCGA-21-1076 TCGA-21-1080 TCGA-21-1083 TCGA-21-5786 TCGA-21-5787 TCGA-21-A5DI 
       60.89       122.43         8.78        33.93        10.82        32.19 
TCGA-22-0940 TCGA-22-1002 TCGA-22-1011 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 
       19.99         4.31         1.74        27.02        48.82        20.48 
TCGA-22-4593 TCGA-22-4596 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 
       35.08         0.56        34.75        13.12        32.02        19.30 
TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5477 TCGA-22-5478 
       11.77        31.73        64.93        63.55        44.25         0.79 
TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5491 TCGA-22-5492 
       79.20        11.74        18.84        30.12        56.32        16.64 
TCGA-22-A5C4 TCGA-33-4538 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 
        0.95        97.94       103.53       141.34        14.07        54.44 
TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 
       10.82        19.76        27.02         2.63        61.61        31.50 
TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5928 
       28.96        32.88        31.27        50.24        67.79        18.15 
TCGA-34-5929 TCGA-34-7107 TCGA-37-3792 TCGA-37-4129 TCGA-37-4132 TCGA-37-4133 
        4.96         1.12         0.39         6.58         7.46         7.82 
TCGA-37-4135 TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5022 TCGA-39-5028 
        6.81         3.39        47.80        74.07        55.20         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5036 TCGA-43-2578 TCGA-43-2581 
       24.33         1.94        27.39        35.64        22.49        38.66 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       27.02        33.11        11.47        12.36        24.89        10.19 
TCGA-43-7656 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-43-A474 TCGA-46-6025 
        6.97        66.51        13.38        11.77        11.61        10.65 
TCGA-51-4079 TCGA-52-7622 TCGA-52-7809 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 
        0.39        17.79         5.46         8.75        27.45        28.96 
TCGA-56-6546 TCGA-56-7222 TCGA-56-7579 TCGA-56-7582 TCGA-56-7730 TCGA-56-8624 
        0.62         0.43         1.45         0.85         0.20         1.18 
TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 TCGA-56-A49D TCGA-56-A4BY 
        2.07         0.56         0.53         1.12         1.25         0.99 
TCGA-58-8386 TCGA-58-8387 TCGA-58-8390 TCGA-58-8391 TCGA-58-8393 TCGA-58-A46J 
        0.03        13.25        29.95        71.24        34.78        64.87 
TCGA-58-A46K TCGA-58-A46M TCGA-60-2696 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 
       34.36        23.24         3.58        96.82        37.94        92.71 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 
       21.73        80.45        66.54        41.42         9.01        56.91 
TCGA-60-2714 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
       50.33        42.64         3.19        32.32        29.85        35.90 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2753 
       23.57        26.83        11.77        16.96        43.10         1.02 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        2.01         0.92         0.99        21.01        25.05         0.99 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2771 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
        2.01         2.01        19.00         2.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 
        3.98        12.00        24.95         1.97        25.97        40.01 
TCGA-66-2788 TCGA-66-2790 TCGA-66-2792 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 
       22.98        22.98        30.02        49.05         2.73         6.64 
TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 TCGA-68-A59I TCGA-77-6842 TCGA-77-6844 
        6.94         8.02         3.16         3.98        29.56        75.09 
TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 
       89.98        20.78         0.49        70.13       106.95         0.16 
TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 TCGA-77-8009 TCGA-77-8130 TCGA-77-8131 
       46.78        15.75         6.51        53.95        82.92        12.59 
TCGA-77-8138 TCGA-77-8139 TCGA-77-8143 TCGA-77-8144 TCGA-77-8148 TCGA-77-8150 
       17.72       104.09        26.40        27.39         9.63        54.41 
TCGA-77-8153 TCGA-77-8154 TCGA-77-A5G3 TCGA-85-6175 TCGA-85-6561 TCGA-85-7697 
       55.36        35.90       117.57         9.67        12.99         0.33 
TCGA-85-7698 TCGA-85-7844 TCGA-85-7950 TCGA-85-8049 TCGA-85-8070 TCGA-85-8071 
        1.61         1.25         1.97         1.97        16.77        14.07 
TCGA-85-8277 TCGA-85-8287 TCGA-85-8288 TCGA-85-8351 TCGA-85-8352 TCGA-85-8353 
        0.36         1.45         1.78         1.81         2.20         1.78 
TCGA-85-8580 TCGA-85-8664 TCGA-85-A4QR TCGA-85-A53L TCGA-90-7766 TCGA-90-7767 
       14.63         0.10         0.82         0.43         9.50         2.93 
TCGA-90-7769 TCGA-90-7964 TCGA-90-A4EE TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 
       11.77        14.07        10.88         2.70         3.48         4.01 
TCGA-92-8064 TCGA-94-7557 TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 TCGA-96-A4JK 
        5.26         0.16        39.88        44.19         6.21         8.98 
TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 TCGA-J1-A4AH TCGA-L3-A4E7 
        8.42        13.58         7.36        10.13         7.30         1.15 
TCGA-L3-A524 TCGA-NC-A5HE TCGA-NC-A5HG TCGA-NC-A5HI 
       14.76        56.61        50.89        37.32 

$`13Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3411 TCGA-18-3412 TCGA-18-3414 
       12.16         4.47        81.01        46.52        11.34        13.02 
TCGA-18-3417 TCGA-18-4086 TCGA-18-5592 TCGA-18-5595 TCGA-21-1077 TCGA-21-1078 
       24.92         2.79         3.02        27.19        34.78        15.58 
TCGA-21-1079 TCGA-21-1081 TCGA-21-1082 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 
       31.73         9.34       119.80        31.63        88.11        41.69 
TCGA-22-0944 TCGA-22-1000 TCGA-22-1005 TCGA-22-1012 TCGA-22-4594 TCGA-22-4595 
        7.33        14.93        64.21        14.10        48.33        24.13 
TCGA-22-4599 TCGA-22-4609 TCGA-22-5474 TCGA-22-5479 TCGA-22-5480 TCGA-22-5489 
       38.17         9.57        14.63        54.28        71.34        62.86 
TCGA-33-4532 TCGA-33-4533 TCGA-33-4547 TCGA-33-4566 TCGA-34-5234 TCGA-34-5236 
        7.63       114.05        43.10       173.82        56.38         9.07 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-37-3783 TCGA-37-3789 
       23.24        12.00        14.07        30.94         3.95         0.43 
TCGA-37-4130 TCGA-37-4141 TCGA-39-5019 TCGA-39-5021 TCGA-39-5024 TCGA-39-5027 
        8.12         0.39        44.75        68.58        70.03        60.79 
TCGA-39-5034 TCGA-39-5035 TCGA-39-5037 TCGA-39-5039 TCGA-39-5040 TCGA-43-2576 
       36.39        15.58        35.70        17.88        17.06        40.21 
TCGA-43-5670 TCGA-43-6771 TCGA-43-6773 TCGA-43-7657 TCGA-43-8118 TCGA-43-A475 
       18.05         5.46         3.81         7.76         2.93         9.73 
TCGA-43-A56U TCGA-43-A56V TCGA-46-3768 TCGA-46-6026 TCGA-51-4080 TCGA-51-4081 
       14.20        12.03         9.99        13.91         0.39        29.95 
TCGA-52-7810 TCGA-56-5897 TCGA-56-5898 TCGA-56-6545 TCGA-56-7221 TCGA-56-7223 
       30.35         0.10        18.25         2.04         0.99         0.99 
TCGA-56-7580 TCGA-56-7822 TCGA-56-8503 TCGA-56-8504 TCGA-56-8622 TCGA-56-A4BW 
        1.32         0.03         1.35         5.85         1.81         0.07 
TCGA-56-A4BX TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DR TCGA-56-A5DS TCGA-58-8388 
        1.51         0.82         0.13         0.13         0.26        12.43 
TCGA-58-8392 TCGA-58-A46L TCGA-58-A46N TCGA-60-2695 TCGA-60-2697 TCGA-60-2698 
       16.47        36.59        17.75        21.11        12.23        10.22 
TCGA-60-2709 TCGA-60-2715 TCGA-60-2716 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 
       49.48        35.34        48.49         2.01        21.07         0.99 
TCGA-66-2757 TCGA-66-2765 TCGA-66-2766 TCGA-66-2769 TCGA-66-2770 TCGA-66-2773 
        0.99         2.01         1.02         7.07        23.01         3.02 
TCGA-66-2789 TCGA-66-2791 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-68-A59J 
        4.04         5.03        10.06        54.08         4.01         3.42 
TCGA-77-6843 TCGA-77-6845 TCGA-77-7138 TCGA-77-7142 TCGA-77-8008 TCGA-77-8128 
       73.12        23.28        11.18        42.28        86.76        37.81 
TCGA-77-8133 TCGA-77-8136 TCGA-77-8140 TCGA-77-8145 TCGA-77-8156 TCGA-77-A5FZ 
       53.92        39.09        11.54         6.97         0.33       126.18 
TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6560 TCGA-85-6798 TCGA-85-7696 TCGA-85-7699 
       30.81        23.44         0.36         1.12         0.59         0.03 
TCGA-85-7843 TCGA-85-8048 TCGA-85-8052 TCGA-85-8072 TCGA-85-8276 TCGA-85-8350 
        1.15         0.85         0.53        16.87         0.43         1.97 
TCGA-85-8354 TCGA-85-8355 TCGA-85-8479 TCGA-85-8481 TCGA-85-8582 TCGA-85-8666 
        2.01         2.01         0.72         0.69        13.94        15.62 
TCGA-85-A4CL TCGA-85-A50M TCGA-85-A513 TCGA-90-6837 TCGA-90-A4ED TCGA-92-8065 
        0.49         0.62         0.79        24.92         8.02         2.30 
TCGA-94-7033 TCGA-94-7943 TCGA-96-8170 TCGA-96-A4JL TCGA-98-8020 TCGA-LA-A446 
        2.86        11.70         6.94         6.02         2.76         1.18 
TCGA-MF-A522 
        2.73 

  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
              0.03               0.03 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
            141.34             173.82 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
            16.195             11.540 
[1] "0.0 - 141.3 (16.2)" "0.0 - 173.8 (11.5)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
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        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-68-8250         TCGA-68-8251         TCGA-68-A59I 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-68-A59J         TCGA-77-6842         TCGA-77-6843 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-77-8150         TCGA-77-8153         TCGA-77-8154 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-77-8156         TCGA-77-A5FZ         TCGA-77-A5G3 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-77-A5GB         TCGA-77-A5GH         TCGA-85-6175 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
[1] "hr=" "1.3"
D65V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  13Q LOSS MUTATED         1       40       79        1        32        45
  13Q LOSS WILD-TYPE       0       29       57        0        18        25
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  13Q LOSS MUTATED           35          9        2
  13Q LOSS WILD-TYPE         19         11        3
D65V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  13Q LOSS MUTATED    56 157  24   9
  13Q LOSS WILD-TYPE  39  93  21  10
D65V4, multiclass
    clus
vv   13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  T1               56                 39
  T2              157                 93
  T3               24                 21
  T4                9                 10
                    vv
clus                  N0  N1  N2  N3
  13Q LOSS MUTATED   149  71  20   3
  13Q LOSS WILD-TYPE 106  38  14   2
D65V5, multiclass
    clus
vv   13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  N0              149                106
  N1               71                 38
  N2               20                 14
  N3                3                  2
                    vv
clus                  M0  M1  MX
  13Q LOSS MUTATED   213   2  29
  13Q LOSS WILD-TYPE 136   3  20
D65V6, multiclass
    clus
vv   13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  M0              213                136
  M1                2                  3
  MX               29                 20
D65V7, binary
                    cls
clus                   0   1
  13Q LOSS MUTATED    64 182
  13Q LOSS WILD-TYPE  40 123
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q LOSS MUTATED     64  182
  13Q LOSS WILD-TYPE   40  123
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  FEMALE               64                 40
  MALE                182                123
D65V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  13Q LOSS MUTATED                                       6
  13Q LOSS WILD-TYPE                                     6
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  13Q LOSS MUTATED                                        0
  13Q LOSS WILD-TYPE                                      6
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  13Q LOSS MUTATED                                         1
  13Q LOSS WILD-TYPE                                       0
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  13Q LOSS MUTATED                                                           239
  13Q LOSS WILD-TYPE                                                         151
D65V9, multiclass
                                                             clus
vv                                                            13Q LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      6
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     0
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              239
                                                             clus
vv                                                            13Q LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                        6
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       6
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                151
D65V10, binary
                    cls
clus                   0   1
  13Q LOSS MUTATED     8 238
  13Q LOSS WILD-TYPE   5 158
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q LOSS MUTATED      8  238
  13Q LOSS WILD-TYPE    5  158
     clus
vv    13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  NO                 8                  5
  YES              238                158
D65V11, continuous
D65V12, continuous
                    vv
clus                  R0  R1  R2  RX
  13Q LOSS MUTATED   200   3   3  11
  13Q LOSS WILD-TYPE 132   5   1   7
D65V13, multiclass
    clus
vv   13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  R0              200                132
  R1                3                  5
  R2                3                  1
  RX               11                  7

Clustering(66) Variable = 14Q LOSS MUTATION ANALYSIS
D66V1, survival
                    sevent
clus2                  0   1
  14Q LOSS MUTATED    81  48
  14Q LOSS WILD-TYPE 163  91
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
               129                254 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                48                 91 
$`14Q LOSS MUTATED`
TCGA-18-3410 TCGA-18-4083 TCGA-18-4086 TCGA-21-1071 TCGA-21-1083 TCGA-21-5784 
        4.80         6.15         2.79        46.88         8.78        41.69 
TCGA-22-0940 TCGA-22-1012 TCGA-22-1016 TCGA-22-4596 TCGA-22-4601 TCGA-22-4613 
       19.99        14.10        27.02         0.56        34.75        11.77 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5480 TCGA-22-5481 TCGA-22-5483 
       63.55        14.63        44.25        71.34        79.20        18.84 
TCGA-22-5491 TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-34-2596 TCGA-34-2600 
       56.32       141.34        14.07        54.44         2.63        61.61 
TCGA-34-2604 TCGA-34-2605 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-4130 
       31.50        28.96        30.94        18.15         4.96         8.12 
TCGA-37-4133 TCGA-37-4135 TCGA-39-5016 TCGA-39-5021 TCGA-39-5024 TCGA-39-5030 
        7.82         6.81        74.07        68.58        70.03         1.94 
TCGA-39-5035 TCGA-39-5040 TCGA-43-3394 TCGA-43-6770 TCGA-43-7656 TCGA-43-7657 
       15.58        17.06        27.02        10.19         6.97         7.76 
TCGA-43-7658 TCGA-43-8116 TCGA-43-A475 TCGA-46-3768 TCGA-46-6026 TCGA-51-4079 
       66.51        11.77         9.73         9.99        13.91         0.39 
TCGA-52-7809 TCGA-56-5897 TCGA-56-7582 TCGA-56-8503 TCGA-56-A4BY TCGA-58-8387 
        5.46         0.10         0.85         1.35         0.99        13.25 
TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 TCGA-58-A46J TCGA-58-A46K TCGA-60-2695 
       12.43        29.95        71.24        64.87        34.36        21.11 
TCGA-60-2704 TCGA-60-2709 TCGA-60-2710 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 
       37.94        49.48        66.54         9.01        56.91        50.33 
TCGA-60-2723 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2753 TCGA-66-2754 
       35.90        26.83        11.77        16.96         1.02         2.01 
TCGA-66-2755 TCGA-66-2757 TCGA-66-2758 TCGA-66-2769 TCGA-66-2770 TCGA-66-2773 
        0.92         0.99        21.01         7.07        23.01         3.02 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2795 TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 
       25.97        40.01         4.01         6.94         8.02         3.16 
TCGA-68-A59J TCGA-77-6842 TCGA-77-6843 TCGA-77-7139 TCGA-77-7141 TCGA-77-7338 
        3.42        29.56        73.12        89.98         0.49         0.16 
TCGA-77-7465 TCGA-77-8008 TCGA-77-8009 TCGA-77-8140 TCGA-77-8156 TCGA-77-A5GH 
       15.75        86.76        53.95        11.54         0.33        23.44 
TCGA-85-6560 TCGA-85-6798 TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 
        0.36         1.12         1.15         1.25         1.97         0.85 
TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8072 TCGA-85-8277 TCGA-85-8287 
        1.97         0.53        16.77        16.87         0.36         1.45 
TCGA-85-8288 TCGA-85-8352 TCGA-85-8580 TCGA-85-8664 TCGA-85-A4CL TCGA-85-A513 
        1.78         2.20        14.63         0.10         0.49         0.79 
TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 TCGA-90-A4ED TCGA-90-A4EE TCGA-94-7557 
        9.50         2.93        11.77         8.02        10.88         0.16 
TCGA-94-7943 TCGA-96-7545 TCGA-96-A4JL TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 
       11.70        44.19         6.02         8.42        13.58         7.36 
TCGA-98-8023 TCGA-LA-A446 TCGA-NC-A5HE 
       10.13         1.18        56.61 

$`14Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.01        79.46        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.64        43.76 
TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1072 TCGA-21-1075 
       90.54         3.02        27.19       119.54        99.16        70.16 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 
       60.89        34.78        15.58        31.73       122.43         9.34 
TCGA-21-1082 TCGA-21-5782 TCGA-21-5783 TCGA-21-5786 TCGA-21-5787 TCGA-21-A5DI 
      119.80        31.63        88.11        33.93        10.82        32.19 
TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1017 
        7.33        14.93         4.31        64.21         1.74        48.82 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 TCGA-22-4599 TCGA-22-4604 
       20.48        35.08        48.33        24.13        38.17        13.12 
TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-5471 TCGA-22-5472 TCGA-22-5478 
       32.02        19.30         9.57        31.73        64.93         0.79 
TCGA-22-5479 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5492 TCGA-22-A5C4 
       54.28        11.74        30.12        62.86        16.64         0.95 
TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 
        7.63       114.05        97.94        43.10       173.82       103.53 
TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 
       10.82        19.76        27.02        32.88        31.27        50.24 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 
       67.79        56.38         9.07        23.24        12.00        14.07 
TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4132 
        1.12         3.95         0.43         0.39         6.58         7.46 
TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 TCGA-39-5019 TCGA-39-5022 TCGA-39-5027 
        0.39         3.39        47.80        44.75        55.20        60.79 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5031 TCGA-39-5034 TCGA-39-5036 TCGA-39-5037 
        1.71        24.33        27.39        36.39        35.64        35.70 
TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-3920 TCGA-43-5668 
       17.88        40.21        22.49        38.66        33.11        11.47 
TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 TCGA-43-6771 TCGA-43-6773 TCGA-43-8115 
       18.05        12.36        24.89         5.46         3.81        13.38 
TCGA-43-8118 TCGA-43-A474 TCGA-43-A56U TCGA-43-A56V TCGA-46-6025 TCGA-51-4080 
        2.93        11.61        14.20        12.03        10.65         0.39 
TCGA-51-4081 TCGA-52-7622 TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 
       29.95        17.79        30.35         8.75        27.45        28.96 
TCGA-56-5898 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 
       18.25         2.04         0.62         0.99         0.43         0.99 
TCGA-56-7579 TCGA-56-7580 TCGA-56-7730 TCGA-56-7822 TCGA-56-8504 TCGA-56-8622 
        1.45         1.32         0.20         0.03         5.85         1.81 
TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 TCGA-56-A49D 
        1.18         2.07         0.56         0.53         1.12         1.25 
TCGA-56-A4BW TCGA-56-A4BX TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DR TCGA-56-A5DS 
        0.07         1.51         0.82         0.13         0.13         0.26 
TCGA-58-8386 TCGA-58-8392 TCGA-58-8393 TCGA-58-A46L TCGA-58-A46M TCGA-58-A46N 
        0.03        16.47        34.78        36.59        23.24        17.75 
TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2706 TCGA-60-2707 
        3.58        12.23        10.22        96.82        92.71        21.73 
TCGA-60-2708 TCGA-60-2711 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 
       80.45        41.42        35.34        48.49        42.64         3.19 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2724 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 
       32.32        29.85        23.57        43.10         2.01        21.07 
TCGA-66-2744 TCGA-66-2756 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99         0.99        25.05         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2771 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
        2.01         2.01        19.00         2.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2788 TCGA-66-2789 
        3.98        12.00        24.95         1.97        22.98         4.04 
TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2800 
       22.98         5.03        30.02        10.06        54.08        49.05 
TCGA-68-7755 TCGA-68-7756 TCGA-68-A59I TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 
        2.73         6.64         3.98        75.09        23.28        11.18 
TCGA-77-7140 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7463 TCGA-77-8007 
       20.78        42.28        70.13       106.95        46.78         6.51 
TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 
       37.81        82.92        12.59        53.92        39.09        17.72 
TCGA-77-8139 TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 
      104.09        26.40        27.39         6.97         9.63        54.41 
TCGA-77-8153 TCGA-77-8154 TCGA-77-A5FZ TCGA-77-A5G3 TCGA-77-A5GB TCGA-85-6175 
       55.36        35.90       126.18       117.57        30.81         9.67 
TCGA-85-6561 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-8071 
       12.99         0.59         0.33         1.61         0.03        14.07 
TCGA-85-8276 TCGA-85-8350 TCGA-85-8351 TCGA-85-8353 TCGA-85-8354 TCGA-85-8355 
        0.43         1.97         1.81         1.78         2.01         2.01 
TCGA-85-8479 TCGA-85-8481 TCGA-85-8582 TCGA-85-8666 TCGA-85-A4QR TCGA-85-A50M 
        0.72         0.69        13.94        15.62         0.82         0.62 
TCGA-85-A53L TCGA-90-6837 TCGA-90-7964 TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 
        0.43        24.92        14.07         2.70         3.48         4.01 
TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-96-7544 TCGA-96-8169 TCGA-96-8170 
        5.26         2.30         2.86        39.88         6.21         6.94 
TCGA-96-A4JK TCGA-98-8020 TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-L3-A524 TCGA-MF-A522 
        8.98         2.76         7.30         1.15        14.76         2.73 
TCGA-NC-A5HG TCGA-NC-A5HI 
       50.89        37.32 

  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
              0.10               0.03 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
            141.34             173.82 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
             11.77              14.48 
[1] "0.1 - 141.3 (11.8)" "0.0 - 173.8 (14.5)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56U 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-43-A56V         TCGA-46-3768         TCGA-46-6025 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-46-6026         TCGA-51-4079         TCGA-51-4080 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-51-4081         TCGA-52-7622         TCGA-52-7809 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-52-7810         TCGA-52-7811         TCGA-52-7812 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-5898 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-56-A49D         TCGA-56-A4BW         TCGA-56-A4BX 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-56-A4BY         TCGA-56-A4ZJ         TCGA-56-A4ZK 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-56-A5DR         TCGA-56-A5DS         TCGA-58-8386 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-68-8250         TCGA-68-8251         TCGA-68-A59I 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-68-A59J         TCGA-77-6842         TCGA-77-6843 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8153         TCGA-77-8154 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5FZ         TCGA-77-A5G3 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-77-A5GB         TCGA-77-A5GH         TCGA-85-6175 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
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        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56U 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-43-A56V         TCGA-46-3768         TCGA-46-6025 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-46-6026         TCGA-51-4079         TCGA-51-4080 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-51-4081         TCGA-52-7622         TCGA-52-7809 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-52-7810         TCGA-52-7811         TCGA-52-7812 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-5898 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-56-A49D         TCGA-56-A4BW         TCGA-56-A4BX 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-56-A4BY         TCGA-56-A4ZJ         TCGA-56-A4ZK 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-56-A5DR         TCGA-56-A5DS         TCGA-58-8386 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-68-8250         TCGA-68-8251         TCGA-68-A59I 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-68-A59J         TCGA-77-6842         TCGA-77-6843 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8153         TCGA-77-8154 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5FZ         TCGA-77-A5G3 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-77-A5GB         TCGA-77-A5GH         TCGA-85-6175 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D66V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  14Q LOSS MUTATED         0       30       47        0        18        23
  14Q LOSS WILD-TYPE       1       39       89        1        32        47
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  14Q LOSS MUTATED           14          6        0
  14Q LOSS WILD-TYPE         40         14        5
D66V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  14Q LOSS MUTATED    40  83  10   5
  14Q LOSS WILD-TYPE  55 167  35  14
D66V4, multiclass
    clus
vv   14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  T1               40                 55
  T2               83                167
  T3               10                 35
  T4                5                 14
                    vv
clus                  N0  N1  N2  N3
  14Q LOSS MUTATED    87  42   7   0
  14Q LOSS WILD-TYPE 168  67  27   5
D66V5, multiclass
    clus
vv   14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  N0               87                168
  N1               42                 67
  N2                7                 27
  N3                0                  5
                    vv
clus                  M0  M1  MX
  14Q LOSS MUTATED   119   0  18
  14Q LOSS WILD-TYPE 230   5  31
D66V6, multiclass
    clus
vv   14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  M0              119                230
  M1                0                  5
  MX               18                 31
D66V7, binary
                    cls
clus                   0   1
  14Q LOSS MUTATED    40  98
  14Q LOSS WILD-TYPE  64 207
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q LOSS MUTATED     40   98
  14Q LOSS WILD-TYPE   64  207
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  FEMALE               40                 64
  MALE                 98                207
D66V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  14Q LOSS MUTATED                                       5
  14Q LOSS WILD-TYPE                                     7
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  14Q LOSS MUTATED                                        0
  14Q LOSS WILD-TYPE                                      6
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  14Q LOSS MUTATED                                         1
  14Q LOSS WILD-TYPE                                       0
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  14Q LOSS MUTATED                                                           132
  14Q LOSS WILD-TYPE                                                         258
D66V9, multiclass
                                                             clus
vv                                                            14Q LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      5
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     0
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              132
                                                             clus
vv                                                            14Q LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                        7
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       6
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                258
D66V10, binary
                    cls
clus                   0   1
  14Q LOSS MUTATED     4 134
  14Q LOSS WILD-TYPE   9 262
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q LOSS MUTATED      4  134
  14Q LOSS WILD-TYPE    9  262
     clus
vv    14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  NO                 4                  9
  YES              134                262
D66V11, continuous
D66V12, continuous
                    vv
clus                  R0  R1  R2  RX
  14Q LOSS MUTATED   114   3   1   3
  14Q LOSS WILD-TYPE 218   5   3  15
D66V13, multiclass
    clus
vv   14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  R0              114                218
  R1                3                  5
  R2                1                  3
  RX                3                 15

Clustering(67) Variable = 15Q LOSS MUTATION ANALYSIS
D67V1, survival
                    sevent
clus2                  0   1
  15Q LOSS MUTATED    63  41
  15Q LOSS WILD-TYPE 181  98
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
               104                279 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                41                 98 
$`15Q LOSS MUTATED`
TCGA-18-3406 TCGA-18-3412 TCGA-18-3416 TCGA-18-5592 TCGA-21-1070 TCGA-21-1071 
       12.16        11.34        28.34         3.02       119.54        46.88 
TCGA-21-1072 TCGA-21-1080 TCGA-21-5787 TCGA-22-0944 TCGA-22-1000 TCGA-22-1012 
       99.16       122.43        10.82         7.33        14.93        14.10 
TCGA-22-1016 TCGA-22-1017 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 
       27.02        48.82        48.33        24.13         0.56        38.17 
TCGA-22-5471 TCGA-22-5480 TCGA-33-4533 TCGA-33-4582 TCGA-33-4587 TCGA-33-4589 
       31.73        71.34       114.05       103.53        54.44        10.82 
TCGA-34-2600 TCGA-34-5929 TCGA-37-3783 TCGA-37-4130 TCGA-37-4133 TCGA-37-4141 
       61.61         4.96         3.95         8.12         7.82         0.39 
TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5021 TCGA-39-5028 TCGA-39-5029 
        3.39        47.80        74.07        68.58         1.71        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5040 TCGA-43-2578 TCGA-43-2581 
        1.94        27.39        36.39        17.06        22.49        38.66 
TCGA-43-5668 TCGA-43-5670 TCGA-43-A56V TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
       11.47        18.05        12.03         9.99        10.65        13.91 
TCGA-52-7810 TCGA-56-7223 TCGA-56-7580 TCGA-56-7822 TCGA-56-8503 TCGA-56-A49D 
       30.35         0.99         1.32         0.03         1.35         1.25 
TCGA-56-A4BW TCGA-58-8386 TCGA-60-2698 TCGA-60-2703 TCGA-60-2708 TCGA-60-2712 
        0.07         0.03        10.22        96.82        80.45         9.01 
TCGA-60-2714 TCGA-60-2720 TCGA-60-2723 TCGA-60-2726 TCGA-66-2737 TCGA-66-2742 
       50.33         3.19        35.90        11.77         2.01        21.07 
TCGA-66-2756 TCGA-66-2791 TCGA-66-2793 TCGA-66-2794 TCGA-66-2800 TCGA-68-8250 
        0.99         5.03        10.06        54.08        49.05         8.02 
TCGA-68-A59I TCGA-68-A59J TCGA-77-6842 TCGA-77-7139 TCGA-77-7337 TCGA-77-8007 
        3.98         3.42        29.56        89.98       106.95         6.51 
TCGA-77-8009 TCGA-77-8128 TCGA-77-8130 TCGA-77-8145 TCGA-77-8153 TCGA-77-8156 
       53.95        37.81        82.92         6.97        55.36         0.33 
TCGA-77-A5GH TCGA-85-6175 TCGA-85-6560 TCGA-85-7696 TCGA-85-7843 TCGA-85-8072 
       23.44         9.67         0.36         0.59         1.15        16.87 
TCGA-85-8288 TCGA-85-8479 TCGA-85-8666 TCGA-85-A50M TCGA-85-A53L TCGA-90-7767 
        1.78         0.72        15.62         0.62         0.43         2.93 
TCGA-90-A4ED TCGA-90-A4EE TCGA-92-8064 TCGA-92-8065 TCGA-96-A4JK TCGA-MF-A522 
        8.02        10.88         5.26         2.30         8.98         2.73 
TCGA-NC-A5HG TCGA-NC-A5HI 
       50.89        37.32 

$`15Q LOSS WILD-TYPE`
TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 TCGA-18-3414 
        4.47        81.01        79.46         4.80        46.52        13.02 
TCGA-18-3415 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 
       59.51        24.92         1.64        43.76         6.15         2.79 
TCGA-18-4721 TCGA-18-5595 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 
       90.54        27.19        70.16        60.89        34.78        15.58 
TCGA-21-1079 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 
       31.73         9.34       119.80         8.78        31.63        88.11 
TCGA-21-5784 TCGA-21-5786 TCGA-21-A5DI TCGA-22-0940 TCGA-22-1002 TCGA-22-1005 
       41.69        33.93        32.19        19.99         4.31        64.21 
TCGA-22-1011 TCGA-22-4591 TCGA-22-4593 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 
        1.74        20.48        35.08        34.75        13.12        32.02 
TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
       19.30         9.57        11.77        64.93        63.55        14.63 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 
       44.25         0.79        54.28        79.20        11.74        18.84 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-22-A5C4 TCGA-33-4532 
       30.12        62.86        56.32        16.64         0.95         7.63 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
       97.94        43.10       173.82       141.34        14.07        19.76 
TCGA-33-6738 TCGA-34-2596 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 
       27.02         2.63        31.50        28.96        32.88        31.27 
TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 
       50.24        67.79        56.38         9.07        23.24        12.00 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-7107 TCGA-37-3789 TCGA-37-3792 
       14.07        30.94        18.15         1.12         0.43         0.39 
TCGA-37-4129 TCGA-37-4132 TCGA-37-4135 TCGA-39-5019 TCGA-39-5022 TCGA-39-5024 
        6.58         7.46         6.81        44.75        55.20        70.03 
TCGA-39-5027 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 
       60.79        15.58        35.64        35.70        17.88        40.21 
TCGA-43-3394 TCGA-43-3920 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 
       27.02        33.11        12.36        24.89        10.19         5.46 
TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 
        3.81         6.97         7.76        66.51        13.38        11.77 
TCGA-43-8118 TCGA-43-A474 TCGA-43-A475 TCGA-43-A56U TCGA-51-4079 TCGA-51-4080 
        2.93        11.61         9.73        14.20         0.39         0.39 
TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 
       29.95        17.79         5.46         8.75        27.45        28.96 
TCGA-56-5897 TCGA-56-5898 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 
        0.10        18.25         2.04         0.62         0.99         0.43 
TCGA-56-7579 TCGA-56-7582 TCGA-56-7730 TCGA-56-8504 TCGA-56-8622 TCGA-56-8624 
        1.45         0.85         0.20         5.85         1.81         1.18 
TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 TCGA-56-A4BX TCGA-56-A4BY 
        2.07         0.56         0.53         1.12         1.51         0.99 
TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DR TCGA-56-A5DS TCGA-58-8387 TCGA-58-8388 
        0.82         0.13         0.13         0.26        13.25        12.43 
TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 TCGA-58-8393 TCGA-58-A46J TCGA-58-A46K 
       29.95        71.24        16.47        34.78        64.87        34.36 
TCGA-58-A46L TCGA-58-A46M TCGA-58-A46N TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 
       36.59        23.24        17.75        21.11         3.58        12.23 
TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       37.94        92.71        21.73        49.48        66.54        41.42 
TCGA-60-2713 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2721 TCGA-60-2722 
       56.91        35.34        48.49        42.64        32.32        29.85 
TCGA-60-2724 TCGA-60-2725 TCGA-66-2727 TCGA-66-2734 TCGA-66-2744 TCGA-66-2753 
       23.57        26.83        16.96        43.10         0.99         1.02 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        2.01         0.92         0.99        21.01        25.05         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 
        2.01         1.02         2.01         2.01         7.07        23.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       19.00         3.02         2.01        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
       12.00        24.95         1.97        25.97        40.01        22.98 
TCGA-66-2789 TCGA-66-2790 TCGA-66-2792 TCGA-66-2795 TCGA-68-7755 TCGA-68-7756 
        4.04        22.98        30.02         4.01         2.73         6.64 
TCGA-68-7757 TCGA-68-8251 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 
        6.94         3.16        73.12        75.09        23.28        11.18 
TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7338 TCGA-77-7463 
       20.78         0.49        42.28        70.13         0.16        46.78 
TCGA-77-7465 TCGA-77-8008 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 
       15.75        86.76        12.59        53.92        39.09        17.72 
TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 TCGA-77-8148 TCGA-77-8150 
      104.09        11.54        26.40        27.39         9.63        54.41 
TCGA-77-8154 TCGA-77-A5FZ TCGA-77-A5G3 TCGA-77-A5GB TCGA-85-6561 TCGA-85-6798 
       35.90       126.18       117.57        30.81        12.99         1.12 
TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 
        0.33         1.61         0.03         1.25         1.97         0.85 
TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8276 TCGA-85-8277 
        1.97         0.53        16.77        14.07         0.43         0.36 
TCGA-85-8287 TCGA-85-8350 TCGA-85-8351 TCGA-85-8352 TCGA-85-8353 TCGA-85-8354 
        1.45         1.97         1.81         2.20         1.78         2.01 
TCGA-85-8355 TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 TCGA-85-A4CL 
        2.01         0.69        14.63        13.94         0.10         0.49 
TCGA-85-A4QR TCGA-85-A513 TCGA-90-6837 TCGA-90-7766 TCGA-90-7769 TCGA-90-7964 
        0.82         0.79        24.92         9.50        11.77        14.07 
TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 
        2.70         3.48         4.01         2.86         0.16        11.70 
TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 TCGA-96-A4JL TCGA-98-7454 
       39.88        44.19         6.21         6.94         6.02         8.42 
TCGA-98-8020 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 TCGA-J1-A4AH TCGA-L3-A4E7 
        2.76        13.58         7.36        10.13         7.30         1.15 
TCGA-L3-A524 TCGA-LA-A446 TCGA-NC-A5HE 
       14.76         1.18        56.61 

  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
              0.03               0.03 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
            122.43             173.82 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
             11.62              14.07 
[1] "0.0 - 122.4 (11.6)" "0.0 - 173.8 (14.1)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56U 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-43-A56V         TCGA-46-3768         TCGA-46-6025 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-46-6026         TCGA-51-4079         TCGA-51-4080 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-51-4081         TCGA-52-7622         TCGA-52-7809 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-52-7810         TCGA-52-7811         TCGA-52-7812 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-5898 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-56-A49D         TCGA-56-A4BW         TCGA-56-A4BX 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-56-A4BY         TCGA-56-A4ZJ         TCGA-56-A4ZK 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-56-A5DR         TCGA-56-A5DS         TCGA-58-8386 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
[1] "hr=" "1"  
D67V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  15Q LOSS MUTATED         0       13       30        0        12        26
  15Q LOSS WILD-TYPE       1       56      106        1        38        44
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  15Q LOSS MUTATED           19          7        2
  15Q LOSS WILD-TYPE         35         13        3
D67V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  15Q LOSS MUTATED    20  66  16   7
  15Q LOSS WILD-TYPE  75 184  29  12
D67V4, multiclass
    clus
vv   15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  T1               20                 75
  T2               66                184
  T3               16                 29
  T4                7                 12
                    vv
clus                  N0  N1  N2  N3
  15Q LOSS MUTATED    56  38  13   1
  15Q LOSS WILD-TYPE 199  71  21   4
D67V5, multiclass
    clus
vv   15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  N0               56                199
  N1               38                 71
  N2               13                 21
  N3                1                  4
                    vv
clus                  M0  M1  MX
  15Q LOSS MUTATED    95   2  11
  15Q LOSS WILD-TYPE 254   3  38
D67V6, multiclass
    clus
vv   15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  M0               95                254
  M1                2                  3
  MX               11                 38
D67V7, binary
                    cls
clus                   0   1
  15Q LOSS MUTATED    32  77
  15Q LOSS WILD-TYPE  72 228
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q LOSS MUTATED     32   77
  15Q LOSS WILD-TYPE   72  228
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  FEMALE               32                 72
  MALE                 77                228
D67V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  15Q LOSS MUTATED                                       2
  15Q LOSS WILD-TYPE                                    10
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  15Q LOSS MUTATED                                        1
  15Q LOSS WILD-TYPE                                      5
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  15Q LOSS MUTATED                                         1
  15Q LOSS WILD-TYPE                                       0
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  15Q LOSS MUTATED                                                           105
  15Q LOSS WILD-TYPE                                                         285
D67V9, multiclass
                                                             clus
vv                                                            15Q LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      2
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              105
                                                             clus
vv                                                            15Q LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       10
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                285
D67V10, binary
                    cls
clus                   0   1
  15Q LOSS MUTATED     6 103
  15Q LOSS WILD-TYPE   7 293
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q LOSS MUTATED      6  103
  15Q LOSS WILD-TYPE    7  293
     clus
vv    15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  NO                 6                  7
  YES              103                293
D67V11, continuous
D67V12, continuous
                    vv
clus                  R0  R1  R2  RX
  15Q LOSS MUTATED    90   2   2   4
  15Q LOSS WILD-TYPE 242   6   2  14
D67V13, multiclass
    clus
vv   15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  R0               90                242
  R1                2                  6
  R2                2                  2
  RX                4                 14

Clustering(68) Variable = 16P LOSS MUTATION ANALYSIS
D68V1, survival
                    sevent
clus2                  0   1
  16P LOSS MUTATED    86  34
  16P LOSS WILD-TYPE 158 105
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
               120                263 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                34                105 
$`16P LOSS MUTATED`
TCGA-18-3410 TCGA-18-3415 TCGA-18-4083 TCGA-18-5592 TCGA-21-1070 TCGA-21-1076 
        4.80        59.51         6.15         3.02       119.54        60.89 
TCGA-21-1080 TCGA-21-5786 TCGA-22-0940 TCGA-22-1002 TCGA-22-1012 TCGA-22-4594 
      122.43        33.93        19.99         4.31        14.10        48.33 
TCGA-22-4595 TCGA-22-4599 TCGA-22-4604 TCGA-22-4613 TCGA-22-5478 TCGA-22-5480 
       24.13        38.17        13.12        11.77         0.79        71.34 
TCGA-22-5482 TCGA-33-4533 TCGA-33-6737 TCGA-34-2596 TCGA-34-2609 TCGA-34-5236 
       11.74       114.05        19.76         2.63        31.27         9.07 
TCGA-34-5239 TCGA-34-5927 TCGA-34-5928 TCGA-39-5011 TCGA-39-5016 TCGA-39-5021 
       23.24        30.94        18.15        47.80        74.07        68.58 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5040 TCGA-43-3394 TCGA-43-5670 TCGA-43-6143 
       60.79         1.71        17.06        27.02        18.05        12.36 
TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8116 TCGA-43-A56U TCGA-46-6025 
        6.97         7.76        66.51        11.77        14.20        10.65 
TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 TCGA-56-7580 TCGA-56-7822 TCGA-56-8503 
       17.79         5.46        30.35         1.32         0.03         1.35 
TCGA-56-8629 TCGA-56-A49D TCGA-56-A4BX TCGA-56-A4BY TCGA-58-8386 TCGA-58-8391 
        1.12         1.25         1.51         0.99         0.03        71.24 
TCGA-58-8392 TCGA-58-8393 TCGA-58-A46J TCGA-58-A46K TCGA-58-A46L TCGA-60-2695 
       16.47        34.78        64.87        34.36        36.59        21.11 
TCGA-60-2708 TCGA-60-2714 TCGA-60-2719 TCGA-60-2720 TCGA-60-2723 TCGA-60-2724 
       80.45        50.33        42.64         3.19        35.90        23.57 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2753 TCGA-66-2757 TCGA-66-2758 TCGA-66-2763 
       16.96        43.10         1.02         0.99        21.01         0.99 
TCGA-66-2769 TCGA-66-2781 TCGA-66-2782 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 
        7.07         3.98        12.00         1.97        25.97        40.01 
TCGA-66-2790 TCGA-66-2792 TCGA-66-2800 TCGA-68-7756 TCGA-68-8251 TCGA-77-6842 
       22.98        30.02        49.05         6.64         3.16        29.56 
TCGA-77-7139 TCGA-77-7142 TCGA-77-7463 TCGA-77-8130 TCGA-77-8136 TCGA-77-8140 
       89.98        42.28        46.78        82.92        39.09        11.54 
TCGA-77-8143 TCGA-77-8154 TCGA-77-8156 TCGA-77-A5GH TCGA-85-6798 TCGA-85-7698 
       26.40        35.90         0.33        23.44         1.12         1.61 
TCGA-85-7699 TCGA-85-7950 TCGA-85-8052 TCGA-85-8070 TCGA-85-8277 TCGA-85-8351 
        0.03         1.97         0.53        16.77         0.36         1.81 
TCGA-85-8352 TCGA-85-8353 TCGA-85-8355 TCGA-85-8580 TCGA-85-8664 TCGA-85-8666 
        2.20         1.78         2.01        14.63         0.10        15.62 
TCGA-85-A4QR TCGA-85-A53L TCGA-90-7767 TCGA-90-A4EE TCGA-92-8064 TCGA-94-7557 
        0.82         0.43         2.93        10.88         5.26         0.16 
TCGA-96-7544 TCGA-96-8169 TCGA-96-A4JK TCGA-L3-A4E7 TCGA-L3-A524 TCGA-NC-A5HG 
       39.88         6.21         8.98         1.15        14.76        50.89 

$`16P LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.01        79.46        46.52        11.34 
TCGA-18-3414 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4086 
       13.02        28.34        24.92         1.64        43.76         2.79 
TCGA-18-4721 TCGA-18-5595 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1077 
       90.54        27.19        46.88        99.16        70.16        34.78 
TCGA-21-1078 TCGA-21-1079 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 
       15.58        31.73         9.34       119.80         8.78        31.63 
TCGA-21-5783 TCGA-21-5784 TCGA-21-5787 TCGA-21-A5DI TCGA-22-0944 TCGA-22-1000 
       88.11        41.69        10.82        32.19         7.33        14.93 
TCGA-22-1005 TCGA-22-1011 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 
       64.21         1.74        27.02        48.82        20.48        35.08 
TCGA-22-4596 TCGA-22-4601 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-5471 
        0.56        34.75        32.02        19.30         9.57        31.73 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5479 TCGA-22-5481 
       64.93        63.55        14.63        44.25        54.28        79.20 
TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-22-A5C4 
       18.84        30.12        62.86        56.32        16.64         0.95 
TCGA-33-4532 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 
        7.63        97.94        43.10       173.82       103.53       141.34 
TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-33-6738 TCGA-34-2600 TCGA-34-2604 
       14.07        54.44        10.82        27.02        61.61        31.50 
TCGA-34-2605 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5240 
       28.96        32.88        50.24        67.79        56.38        12.00 
TCGA-34-5241 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 
       14.07         4.96         1.12         3.95         0.43         0.39 
TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        6.58         8.12         7.46         7.82         6.81         0.39 
TCGA-37-5819 TCGA-39-5019 TCGA-39-5022 TCGA-39-5024 TCGA-39-5029 TCGA-39-5030 
        3.39        44.75        55.20        70.03        24.33         1.94 
TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
       27.39        36.39        15.58        35.64        35.70        17.88 
TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-3920 TCGA-43-5668 TCGA-43-6647 
       40.21        22.49        38.66        33.11        11.47        24.89 
TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-8115 TCGA-43-8118 TCGA-43-A474 
       10.19         5.46         3.81        13.38         2.93        11.61 
TCGA-43-A475 TCGA-43-A56V TCGA-46-3768 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
        9.73        12.03         9.99        13.91         0.39         0.39 
TCGA-51-4081 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-5898 
       29.95         8.75        27.45        28.96         0.10        18.25 
TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 
        2.04         0.62         0.99         0.43         0.99         1.45 
TCGA-56-7582 TCGA-56-7730 TCGA-56-8504 TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 
        0.85         0.20         5.85         1.81         1.18         2.07 
TCGA-56-8626 TCGA-56-8628 TCGA-56-A4BW TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DR 
        0.56         0.53         0.07         0.82         0.13         0.13 
TCGA-56-A5DS TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 TCGA-58-A46M TCGA-58-A46N 
        0.26        13.25        12.43        29.95        23.24        17.75 
TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 
        3.58        12.23        10.22        96.82        37.94        92.71 
TCGA-60-2707 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 
       21.73        49.48        66.54        41.42         9.01        56.91 
TCGA-60-2715 TCGA-60-2716 TCGA-60-2721 TCGA-60-2722 TCGA-60-2725 TCGA-60-2726 
       35.34        48.49        32.32        29.85        26.83        11.77 
TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
        2.01        21.07         0.99         2.01         0.92         0.99 
TCGA-66-2759 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 
       25.05         2.01         1.02         2.01         2.01        23.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2783 
       19.00         3.02         2.01        19.00        12.03        24.95 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
       22.98         4.04         5.03        10.06        54.08         4.01 
TCGA-68-7755 TCGA-68-7757 TCGA-68-8250 TCGA-68-A59I TCGA-68-A59J TCGA-77-6843 
        2.73         6.94         8.02         3.98         3.42        73.12 
TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7140 TCGA-77-7141 TCGA-77-7335 
       75.09        23.28        11.18        20.78         0.49        70.13 
TCGA-77-7337 TCGA-77-7338 TCGA-77-7465 TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 
      106.95         0.16        15.75         6.51        86.76        53.95 
TCGA-77-8128 TCGA-77-8131 TCGA-77-8133 TCGA-77-8138 TCGA-77-8139 TCGA-77-8144 
       37.81        12.59        53.92        17.72       104.09        27.39 
TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-77-8153 TCGA-77-A5FZ TCGA-77-A5G3 
        6.97         9.63        54.41        55.36       126.18       117.57 
TCGA-77-A5GB TCGA-85-6175 TCGA-85-6560 TCGA-85-6561 TCGA-85-7696 TCGA-85-7697 
       30.81         9.67         0.36        12.99         0.59         0.33 
TCGA-85-7843 TCGA-85-7844 TCGA-85-8048 TCGA-85-8049 TCGA-85-8071 TCGA-85-8072 
        1.15         1.25         0.85         1.97        14.07        16.87 
TCGA-85-8276 TCGA-85-8287 TCGA-85-8288 TCGA-85-8350 TCGA-85-8354 TCGA-85-8479 
        0.43         1.45         1.78         1.97         2.01         0.72 
TCGA-85-8481 TCGA-85-8582 TCGA-85-A4CL TCGA-85-A50M TCGA-85-A513 TCGA-90-6837 
        0.69        13.94         0.49         0.62         0.79        24.92 
TCGA-90-7766 TCGA-90-7769 TCGA-90-7964 TCGA-90-A4ED TCGA-92-7340 TCGA-92-7341 
        9.50        11.77        14.07         8.02         2.70         3.48 
TCGA-92-8063 TCGA-92-8065 TCGA-94-7033 TCGA-94-7943 TCGA-96-7545 TCGA-96-8170 
        4.01         2.30         2.86        11.70        44.19         6.94 
TCGA-96-A4JL TCGA-98-7454 TCGA-98-8020 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
        6.02         8.42         2.76        13.58         7.36        10.13 
TCGA-J1-A4AH TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HI 
        7.30         1.18         2.73        56.61        37.32 

  16P LOSS MUTATED 16P LOSS WILD-TYPE 
              0.03               0.07 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
            122.43             173.82 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
            14.695             12.990 
[1] "0.0 - 122.4 (14.7)" "0.1 - 173.8 (13.0)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
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        TCGA-56-A4BY         TCGA-56-A4ZJ         TCGA-56-A4ZK 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-56-A5DR         TCGA-56-A5DS         TCGA-58-8386 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
  "16P LOSS MUTATED"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
  "16P LOSS MUTATED"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
  "16P LOSS MUTATED"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-68-A59I 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-68-A59J         TCGA-77-6842         TCGA-77-6843 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8153         TCGA-77-8154 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-77-8156         TCGA-77-A5FZ         TCGA-77-A5G3 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-77-A5GB         TCGA-77-A5GH         TCGA-85-6175 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
  "16P LOSS MUTATED"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
[1] "hr=" "1.4"
D68V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  16P LOSS MUTATED         0       18       44        0        12        27
  16P LOSS WILD-TYPE       1       51       92        1        38        43
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  16P LOSS MUTATED           20          4        1
  16P LOSS WILD-TYPE         34         16        4
D68V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  16P LOSS MUTATED    21  82  17   6
  16P LOSS WILD-TYPE  74 168  28  13
D68V4, multiclass
    clus
vv   16P LOSS MUTATED 16P LOSS WILD-TYPE
  T1               21                 74
  T2               82                168
  T3               17                 28
  T4                6                 13
                    vv
clus                  N0  N1  N2  N3
  16P LOSS MUTATED    81  34  10   0
  16P LOSS WILD-TYPE 174  75  24   5
D68V5, multiclass
    clus
vv   16P LOSS MUTATED 16P LOSS WILD-TYPE
  N0               81                174
  N1               34                 75
  N2               10                 24
  N3                0                  5
                    vv
clus                  M0  M1  MX
  16P LOSS MUTATED   112   1  12
  16P LOSS WILD-TYPE 237   4  37
D68V6, multiclass
    clus
vv   16P LOSS MUTATED 16P LOSS WILD-TYPE
  M0              112                237
  M1                1                  4
  MX               12                 37
D68V7, binary
                    cls
clus                   0   1
  16P LOSS MUTATED    38  88
  16P LOSS WILD-TYPE  66 217
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P LOSS MUTATED     38   88
  16P LOSS WILD-TYPE   66  217
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  FEMALE               38                 66
  MALE                 88                217
D68V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  16P LOSS MUTATED                                       7
  16P LOSS WILD-TYPE                                     5
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  16P LOSS MUTATED                                        0
  16P LOSS WILD-TYPE                                      6
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  16P LOSS MUTATED                                         0
  16P LOSS WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  16P LOSS MUTATED                                                           119
  16P LOSS WILD-TYPE                                                         271
D68V9, multiclass
                                                             clus
vv                                                            16P LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      7
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     0
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              119
                                                             clus
vv                                                            16P LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                        5
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       6
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                271
D68V10, binary
                    cls
clus                   0   1
  16P LOSS MUTATED     4 122
  16P LOSS WILD-TYPE   9 274
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P LOSS MUTATED      4  122
  16P LOSS WILD-TYPE    9  274
     clus
vv    16P LOSS MUTATED 16P LOSS WILD-TYPE
  NO                 4                  9
  YES              122                274
D68V11, continuous
D68V12, continuous
                    vv
clus                  R0  R1  R2  RX
  16P LOSS MUTATED   104   1   0   4
  16P LOSS WILD-TYPE 228   7   4  14
D68V13, multiclass
    clus
vv   16P LOSS MUTATED 16P LOSS WILD-TYPE
  R0              104                228
  R1                1                  7
  R2                0                  4
  RX                4                 14

Clustering(69) Variable = 16Q LOSS MUTATION ANALYSIS
D69V1, survival
                    sevent
clus2                  0   1
  16Q LOSS MUTATED    92  44
  16Q LOSS WILD-TYPE 152  95
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
               136                247 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                44                 95 
$`16Q LOSS MUTATED`
TCGA-18-3410 TCGA-18-3415 TCGA-18-3419 TCGA-18-4083 TCGA-18-5592 TCGA-21-1070 
        4.80        59.51         1.64         6.15         3.02       119.54 
TCGA-21-1076 TCGA-21-1080 TCGA-21-1083 TCGA-22-0940 TCGA-22-1002 TCGA-22-1012 
       60.89       122.43         8.78        19.99         4.31        14.10 
TCGA-22-4594 TCGA-22-4595 TCGA-22-4599 TCGA-22-4604 TCGA-22-5473 TCGA-22-5478 
       48.33        24.13        38.17        13.12        63.55         0.79 
TCGA-22-5480 TCGA-22-5481 TCGA-22-5489 TCGA-33-4533 TCGA-33-4586 TCGA-33-6737 
       71.34        79.20        62.86       114.05        14.07        19.76 
TCGA-34-2596 TCGA-34-2604 TCGA-34-2609 TCGA-34-5231 TCGA-34-5236 TCGA-34-5239 
        2.63        31.50        31.27        50.24         9.07        23.24 
TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 
       30.94        18.15         4.96        47.80        74.07        44.75 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5030 TCGA-39-5040 TCGA-43-2578 TCGA-43-3394 
       60.79         1.71         1.94        17.06        22.49        27.02 
TCGA-43-3920 TCGA-43-5670 TCGA-43-7657 TCGA-43-7658 TCGA-43-8116 TCGA-43-A56U 
       33.11        18.05         7.76        66.51        11.77        14.20 
TCGA-46-6025 TCGA-46-6026 TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 TCGA-56-7221 
       10.65        13.91        17.79         5.46        30.35         0.99 
TCGA-56-7222 TCGA-56-7580 TCGA-56-7730 TCGA-56-7822 TCGA-56-8503 TCGA-56-8626 
        0.43         1.32         0.20         0.03         1.35         0.56 
TCGA-56-A49D TCGA-56-A4BX TCGA-56-A4BY TCGA-58-8386 TCGA-58-8387 TCGA-58-8388 
        1.25         1.51         0.99         0.03        13.25        12.43 
TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 TCGA-58-8393 TCGA-58-A46J TCGA-58-A46L 
       29.95        71.24        16.47        34.78        64.87        36.59 
TCGA-58-A46M TCGA-60-2695 TCGA-60-2710 TCGA-60-2711 TCGA-60-2713 TCGA-60-2714 
       23.24        21.11        66.54        41.42        56.91        50.33 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2723 TCGA-66-2727 TCGA-66-2734 TCGA-66-2753 
       42.64         3.19        35.90        16.96        43.10         1.02 
TCGA-66-2755 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2767 
        0.92         0.99        21.01        25.05         0.99         2.01 
TCGA-66-2769 TCGA-66-2770 TCGA-66-2778 TCGA-66-2782 TCGA-66-2787 TCGA-66-2789 
        7.07        23.01        19.00        12.00        40.01         4.04 
TCGA-66-2790 TCGA-66-2792 TCGA-66-2793 TCGA-66-2800 TCGA-68-7756 TCGA-68-8251 
       22.98        30.02        10.06        49.05         6.64         3.16 
TCGA-68-A59J TCGA-77-6842 TCGA-77-7139 TCGA-77-7142 TCGA-77-7463 TCGA-77-8136 
        3.42        29.56        89.98        42.28        46.78        39.09 
TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 TCGA-77-8150 TCGA-77-8153 TCGA-77-8156 
      104.09        11.54        26.40        54.41        55.36         0.33 
TCGA-77-A5GH TCGA-85-6561 TCGA-85-6798 TCGA-85-7698 TCGA-85-7699 TCGA-85-7950 
       23.44        12.99         1.12         1.61         0.03         1.97 
TCGA-85-8071 TCGA-85-8353 TCGA-85-8355 TCGA-85-8580 TCGA-85-8664 TCGA-85-8666 
       14.07         1.78         2.01        14.63         0.10        15.62 
TCGA-85-A4QR TCGA-90-7767 TCGA-90-A4ED TCGA-90-A4EE TCGA-92-8064 TCGA-92-8065 
        0.82         2.93         8.02        10.88         5.26         2.30 
TCGA-94-7557 TCGA-96-8169 TCGA-96-A4JK TCGA-NC-A5HG 
        0.16         6.21         8.98        50.89 

$`16Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.01        79.46        46.52        11.34 
TCGA-18-3414 TCGA-18-3416 TCGA-18-3417 TCGA-18-3421 TCGA-18-4086 TCGA-18-4721 
       13.02        28.34        24.92        43.76         2.79        90.54 
TCGA-18-5595 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1077 TCGA-21-1078 
       27.19        46.88        99.16        70.16        34.78        15.58 
TCGA-21-1079 TCGA-21-1081 TCGA-21-1082 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 
       31.73         9.34       119.80        31.63        88.11        41.69 
TCGA-21-5786 TCGA-21-5787 TCGA-21-A5DI TCGA-22-0944 TCGA-22-1000 TCGA-22-1005 
       33.93        10.82        32.19         7.33        14.93        64.21 
TCGA-22-1011 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 TCGA-22-4596 
        1.74        27.02        48.82        20.48        35.08         0.56 
TCGA-22-4601 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 
       34.75        32.02        19.30         9.57        11.77        31.73 
TCGA-22-5472 TCGA-22-5474 TCGA-22-5477 TCGA-22-5479 TCGA-22-5482 TCGA-22-5483 
       64.93        14.63        44.25        54.28        11.74        18.84 
TCGA-22-5485 TCGA-22-5491 TCGA-22-5492 TCGA-22-A5C4 TCGA-33-4532 TCGA-33-4538 
       30.12        56.32        16.64         0.95         7.63        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4587 TCGA-33-4589 
       43.10       173.82       103.53       141.34        54.44        10.82 
TCGA-33-6738 TCGA-34-2600 TCGA-34-2605 TCGA-34-2608 TCGA-34-5232 TCGA-34-5234 
       27.02        61.61        28.96        32.88        67.79        56.38 
TCGA-34-5240 TCGA-34-5241 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 
       12.00        14.07         1.12         3.95         0.43         0.39 
TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        6.58         8.12         7.46         7.82         6.81         0.39 
TCGA-37-5819 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5029 TCGA-39-5031 
        3.39        68.58        55.20        70.03        24.33        27.39 
TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 
       36.39        15.58        35.64        35.70        17.88        40.21 
TCGA-43-2581 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 
       38.66        11.47        12.36        24.89        10.19         5.46 
TCGA-43-6773 TCGA-43-7656 TCGA-43-8115 TCGA-43-8118 TCGA-43-A474 TCGA-43-A475 
        3.81         6.97        13.38         2.93        11.61         9.73 
TCGA-43-A56V TCGA-46-3768 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7811 
       12.03         9.99         0.39         0.39        29.95         8.75 
TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-5898 TCGA-56-6545 TCGA-56-6546 
       27.45        28.96         0.10        18.25         2.04         0.62 
TCGA-56-7223 TCGA-56-7579 TCGA-56-7582 TCGA-56-8504 TCGA-56-8622 TCGA-56-8624 
        0.99         1.45         0.85         5.85         1.81         1.18 
TCGA-56-8625 TCGA-56-8628 TCGA-56-8629 TCGA-56-A4BW TCGA-56-A4ZJ TCGA-56-A4ZK 
        2.07         0.53         1.12         0.07         0.82         0.13 
TCGA-56-A5DR TCGA-56-A5DS TCGA-58-A46K TCGA-58-A46N TCGA-60-2696 TCGA-60-2697 
        0.13         0.26        34.36        17.75         3.58        12.23 
TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 
       10.22        96.82        37.94        92.71        21.73        80.45 
TCGA-60-2709 TCGA-60-2712 TCGA-60-2715 TCGA-60-2716 TCGA-60-2721 TCGA-60-2722 
       49.48         9.01        35.34        48.49        32.32        29.85 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 
       23.57        26.83        11.77         2.01        21.07         0.99 
TCGA-66-2754 TCGA-66-2756 TCGA-66-2765 TCGA-66-2766 TCGA-66-2768 TCGA-66-2771 
        2.01         0.99         2.01         1.02         2.01        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2780 TCGA-66-2781 TCGA-66-2783 TCGA-66-2785 
        3.02         2.01        12.03         3.98        24.95         1.97 
TCGA-66-2786 TCGA-66-2788 TCGA-66-2791 TCGA-66-2794 TCGA-66-2795 TCGA-68-7755 
       25.97        22.98         5.03        54.08         4.01         2.73 
TCGA-68-7757 TCGA-68-8250 TCGA-68-A59I TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 
        6.94         8.02         3.98        73.12        75.09        23.28 
TCGA-77-7138 TCGA-77-7140 TCGA-77-7141 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 
       11.18        20.78         0.49        70.13       106.95         0.16 
TCGA-77-7465 TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 TCGA-77-8128 TCGA-77-8130 
       15.75         6.51        86.76        53.95        37.81        82.92 
TCGA-77-8131 TCGA-77-8133 TCGA-77-8138 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 
       12.59        53.92        17.72        27.39         6.97         9.63 
TCGA-77-8154 TCGA-77-A5FZ TCGA-77-A5G3 TCGA-77-A5GB TCGA-85-6175 TCGA-85-6560 
       35.90       126.18       117.57        30.81         9.67         0.36 
TCGA-85-7696 TCGA-85-7697 TCGA-85-7843 TCGA-85-7844 TCGA-85-8048 TCGA-85-8049 
        0.59         0.33         1.15         1.25         0.85         1.97 
TCGA-85-8052 TCGA-85-8070 TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 
        0.53        16.77        16.87         0.43         0.36         1.45 
TCGA-85-8288 TCGA-85-8350 TCGA-85-8351 TCGA-85-8352 TCGA-85-8354 TCGA-85-8479 
        1.78         1.97         1.81         2.20         2.01         0.72 
TCGA-85-8481 TCGA-85-8582 TCGA-85-A4CL TCGA-85-A50M TCGA-85-A513 TCGA-85-A53L 
        0.69        13.94         0.49         0.62         0.79         0.43 
TCGA-90-6837 TCGA-90-7766 TCGA-90-7769 TCGA-90-7964 TCGA-92-7340 TCGA-92-7341 
       24.92         9.50        11.77        14.07         2.70         3.48 
TCGA-92-8063 TCGA-94-7033 TCGA-94-7943 TCGA-96-7544 TCGA-96-7545 TCGA-96-8170 
        4.01         2.86        11.70        39.88        44.19         6.94 
TCGA-96-A4JL TCGA-98-7454 TCGA-98-8020 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
        6.02         8.42         2.76        13.58         7.36        10.13 
TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-L3-A524 TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE 
        7.30         1.15        14.76         1.18         2.73        56.61 
TCGA-NC-A5HI 
       37.32 

  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
              0.03               0.07 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
            122.43             173.82 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
            15.125             12.030 
[1] "0.0 - 122.4 (15.1)" "0.1 - 173.8 (12.0)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56U 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-43-A56V         TCGA-46-3768         TCGA-46-6025 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-46-6026         TCGA-51-4079         TCGA-51-4080 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-51-4081         TCGA-52-7622         TCGA-52-7809 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-52-7810         TCGA-52-7811         TCGA-52-7812 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-5898 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-56-A49D         TCGA-56-A4BW         TCGA-56-A4BX 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-56-A4BY         TCGA-56-A4ZJ         TCGA-56-A4ZK 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-56-A5DR         TCGA-56-A5DS         TCGA-58-8386 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-68-A59I 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-68-A59J         TCGA-77-6842         TCGA-77-6843 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8153         TCGA-77-8154 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5FZ         TCGA-77-A5G3 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-77-A5GB         TCGA-77-A5GH         TCGA-85-6175 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
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"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56U 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-43-A56V         TCGA-46-3768         TCGA-46-6025 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-46-6026         TCGA-51-4079         TCGA-51-4080 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-51-4081         TCGA-52-7622         TCGA-52-7809 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-52-7810         TCGA-52-7811         TCGA-52-7812 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-5898 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-56-A49D         TCGA-56-A4BW         TCGA-56-A4BX 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-56-A4BY         TCGA-56-A4ZJ         TCGA-56-A4ZK 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-56-A5DR         TCGA-56-A5DS         TCGA-58-8386 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-68-A59I 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-68-A59J         TCGA-77-6842         TCGA-77-6843 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8153         TCGA-77-8154 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5FZ         TCGA-77-A5G3 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-77-A5GB         TCGA-77-A5GH         TCGA-85-6175 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D69V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  16Q LOSS MUTATED         0       20       50        0        15        29
  16Q LOSS WILD-TYPE       1       49       86        1        35        41
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  16Q LOSS MUTATED           20          8        1
  16Q LOSS WILD-TYPE         34         12        4
D69V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  16Q LOSS MUTATED    27  93  18   7
  16Q LOSS WILD-TYPE  68 157  27  12
D69V4, multiclass
    clus
vv   16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  T1               27                 68
  T2               93                157
  T3               18                 27
  T4                7                 12
                    vv
clus                  N0  N1  N2  N3
  16Q LOSS MUTATED    91  37  12   3
  16Q LOSS WILD-TYPE 164  72  22   2
D69V5, multiclass
    clus
vv   16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  N0               91                164
  N1               37                 72
  N2               12                 22
  N3                3                  2
                    vv
clus                  M0  M1  MX
  16Q LOSS MUTATED   128   1  13
  16Q LOSS WILD-TYPE 221   4  36
D69V6, multiclass
    clus
vv   16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  M0              128                221
  M1                1                  4
  MX               13                 36
D69V7, binary
                    cls
clus                   0   1
  16Q LOSS MUTATED    45 100
  16Q LOSS WILD-TYPE  59 205
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q LOSS MUTATED     45  100
  16Q LOSS WILD-TYPE   59  205
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  FEMALE               45                 59
  MALE                100                205
D69V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  16Q LOSS MUTATED                                       6
  16Q LOSS WILD-TYPE                                     6
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  16Q LOSS MUTATED                                        0
  16Q LOSS WILD-TYPE                                      6
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  16Q LOSS MUTATED                                         0
  16Q LOSS WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  16Q LOSS MUTATED                                                           139
  16Q LOSS WILD-TYPE                                                         251
D69V9, multiclass
                                                             clus
vv                                                            16Q LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      6
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     0
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              139
                                                             clus
vv                                                            16Q LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                        6
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       6
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                251
D69V10, binary
                    cls
clus                   0   1
  16Q LOSS MUTATED     7 138
  16Q LOSS WILD-TYPE   6 258
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q LOSS MUTATED      7  138
  16Q LOSS WILD-TYPE    6  258
     clus
vv    16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  NO                 7                  6
  YES              138                258
D69V11, continuous
D69V12, continuous
                    vv
clus                  R0  R1  R2  RX
  16Q LOSS MUTATED   115   1   2   4
  16Q LOSS WILD-TYPE 217   7   2  14
D69V13, multiclass
    clus
vv   16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  R0              115                217
  R1                1                  7
  R2                2                  2
  RX                4                 14

Clustering(70) Variable = 17P LOSS MUTATION ANALYSIS
D70V1, survival
                    sevent
clus2                  0   1
  17P LOSS MUTATED   140  80
  17P LOSS WILD-TYPE 104  59
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
               220                163 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                80                 59 
$`17P LOSS MUTATED`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3410 TCGA-18-3411 TCGA-18-3414 TCGA-18-3415 
       12.16         4.47         4.80        46.52        13.02        59.51 
TCGA-18-3416 TCGA-18-3419 TCGA-18-3421 TCGA-18-4721 TCGA-21-1070 TCGA-21-1075 
       28.34         1.64        43.76        90.54       119.54        70.16 
TCGA-21-1077 TCGA-21-1080 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 
       34.78       122.43       119.80         8.78        31.63        88.11 
TCGA-21-5786 TCGA-21-5787 TCGA-21-A5DI TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 
       33.93        10.82        32.19         7.33        14.93         4.31 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4594 TCGA-22-4595 
        1.74        14.10        27.02        20.48        48.33        24.13 
TCGA-22-4596 TCGA-22-4599 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 
        0.56        38.17        13.12        32.02        19.30         9.57 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5481 
       64.93        63.55        44.25         0.79        71.34        79.20 
TCGA-22-5483 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-22-A5C4 TCGA-33-4547 
       18.84        62.86        56.32        16.64         0.95        43.10 
TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-33-6738 TCGA-34-2600 TCGA-34-2604 
      141.34        14.07        54.44        27.02        61.61        31.50 
TCGA-34-2608 TCGA-34-5231 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4133 
       32.88        50.24         3.95         0.43         0.39         7.82 
TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5024 TCGA-39-5027 
        6.81         0.39         3.39        74.07        70.03        60.79 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5034 TCGA-39-5035 TCGA-39-5040 TCGA-43-2576 
       24.33         1.94        36.39        15.58        17.06        40.21 
TCGA-43-2581 TCGA-43-3394 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 TCGA-43-7656 
       38.66        27.02        11.47        18.05        12.36         6.97 
TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-43-A474 TCGA-43-A475 TCGA-43-A56U 
       66.51        13.38        11.77        11.61         9.73        14.20 
TCGA-43-A56V TCGA-46-6026 TCGA-51-4080 TCGA-52-7622 TCGA-52-7810 TCGA-52-7812 
       12.03        13.91         0.39        17.79        30.35        27.45 
TCGA-56-1622 TCGA-56-5897 TCGA-56-5898 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 
       28.96         0.10        18.25         0.99         1.45         1.32 
TCGA-56-7822 TCGA-56-8503 TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 
        0.03         1.35         1.81         1.18         2.07         0.56 
TCGA-56-8628 TCGA-56-8629 TCGA-56-A49D TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A4ZJ 
        0.53         1.12         1.25         1.51         0.99         0.82 
TCGA-56-A5DR TCGA-58-8386 TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 TCGA-58-8393 
        0.13         0.03        13.25        12.43        29.95        34.78 
TCGA-58-A46L TCGA-58-A46M TCGA-60-2695 TCGA-60-2696 TCGA-60-2698 TCGA-60-2703 
       36.59        23.24        21.11         3.58        10.22        96.82 
TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       92.71        21.73        80.45        66.54        41.42         9.01 
TCGA-60-2713 TCGA-60-2714 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
       56.91        50.33        42.64         3.19        32.32        29.85 
TCGA-60-2723 TCGA-60-2725 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2753 
       35.90        26.83        16.96        43.10        21.07         1.02 
TCGA-66-2754 TCGA-66-2757 TCGA-66-2759 TCGA-66-2763 TCGA-66-2766 TCGA-66-2767 
        2.01         0.99        25.05         0.99         1.02         2.01 
TCGA-66-2768 TCGA-66-2769 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2780 
        2.01         7.07        19.00         3.02         2.01        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2788 
        3.98        12.00        24.95         1.97        25.97        22.98 
TCGA-66-2789 TCGA-66-2791 TCGA-66-2793 TCGA-66-2795 TCGA-68-7757 TCGA-77-6842 
        4.04         5.03        10.06         4.01         6.94        29.56 
TCGA-77-6844 TCGA-77-6845 TCGA-77-7139 TCGA-77-7141 TCGA-77-7335 TCGA-77-7337 
       75.09        23.28        89.98         0.49        70.13       106.95 
TCGA-77-7338 TCGA-77-7465 TCGA-77-8008 TCGA-77-8009 TCGA-77-8128 TCGA-77-8130 
        0.16        15.75        86.76        53.95        37.81        82.92 
TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 
       12.59        53.92        39.09        17.72       104.09        11.54 
TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-77-8154 TCGA-77-A5G3 
       27.39         6.97         9.63        54.41        35.90       117.57 
TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6560 TCGA-85-7696 TCGA-85-7697 TCGA-85-7844 
       30.81        23.44         0.36         0.59         0.33         1.25 
TCGA-85-8052 TCGA-85-8070 TCGA-85-8276 TCGA-85-8287 TCGA-85-8288 TCGA-85-8479 
        0.53        16.77         0.43         1.45         1.78         0.72 
TCGA-85-8666 TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A513 TCGA-85-A53L TCGA-90-7766 
       15.62         0.49         0.82         0.79         0.43         9.50 
TCGA-90-7767 TCGA-90-7964 TCGA-90-A4ED TCGA-92-7341 TCGA-92-8063 TCGA-92-8065 
        2.93        14.07         8.02         3.48         4.01         2.30 
TCGA-94-7033 TCGA-96-7544 TCGA-96-7545 TCGA-96-8170 TCGA-96-A4JL TCGA-98-8021 
        2.86        39.88        44.19         6.94         6.02        13.58 
TCGA-98-8022 TCGA-L3-A4E7 TCGA-NC-A5HG TCGA-NC-A5HI 
        7.36         1.15        50.89        37.32 

$`17P LOSS WILD-TYPE`
TCGA-18-3408 TCGA-18-3409 TCGA-18-3412 TCGA-18-3417 TCGA-18-4083 TCGA-18-4086 
       81.01        79.46        11.34        24.92         6.15         2.79 
TCGA-18-5592 TCGA-18-5595 TCGA-21-1071 TCGA-21-1072 TCGA-21-1076 TCGA-21-1078 
        3.02        27.19        46.88        99.16        60.89        15.58 
TCGA-21-1079 TCGA-21-1081 TCGA-21-5784 TCGA-22-0940 TCGA-22-1005 TCGA-22-1017 
       31.73         9.34        41.69        19.99        64.21        48.82 
TCGA-22-4593 TCGA-22-4601 TCGA-22-4613 TCGA-22-5471 TCGA-22-5474 TCGA-22-5479 
       35.08        34.75        11.77        31.73        14.63        54.28 
TCGA-22-5482 TCGA-22-5485 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4566 
       11.74        30.12         7.63       114.05        97.94       173.82 
TCGA-33-4582 TCGA-33-4589 TCGA-33-6737 TCGA-34-2596 TCGA-34-2605 TCGA-34-2609 
      103.53        10.82        19.76         2.63        28.96        31.27 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 
       67.79        56.38         9.07        23.24        12.00        14.07 
TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-4129 TCGA-37-4130 
       30.94        18.15         4.96         1.12         6.58         8.12 
TCGA-37-4132 TCGA-39-5011 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5028 
        7.46        47.80        44.75        68.58        55.20         1.71 
TCGA-39-5031 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3920 
       27.39        35.64        35.70        17.88        22.49        33.11 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7657 TCGA-43-8118 
       24.89        10.19         5.46         3.81         7.76         2.93 
TCGA-46-3768 TCGA-46-6025 TCGA-51-4079 TCGA-51-4081 TCGA-52-7809 TCGA-52-7811 
        9.99        10.65         0.39        29.95         5.46         8.75 
TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7582 TCGA-56-7730 
        2.04         0.62         0.99         0.43         0.85         0.20 
TCGA-56-8504 TCGA-56-A4BW TCGA-56-A4ZK TCGA-56-A5DS TCGA-58-8391 TCGA-58-8392 
        5.85         0.07         0.13         0.26        71.24        16.47 
TCGA-58-A46J TCGA-58-A46K TCGA-58-A46N TCGA-60-2697 TCGA-60-2704 TCGA-60-2709 
       64.87        34.36        17.75        12.23        37.94        49.48 
TCGA-60-2715 TCGA-60-2716 TCGA-60-2724 TCGA-60-2726 TCGA-66-2737 TCGA-66-2744 
       35.34        48.49        23.57        11.77         2.01         0.99 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2758 TCGA-66-2765 TCGA-66-2770 TCGA-66-2778 
        0.92         0.99        21.01         2.01        23.01        19.00 
TCGA-66-2787 TCGA-66-2790 TCGA-66-2792 TCGA-66-2794 TCGA-66-2800 TCGA-68-7755 
       40.01        22.98        30.02        54.08        49.05         2.73 
TCGA-68-7756 TCGA-68-8250 TCGA-68-8251 TCGA-68-A59I TCGA-68-A59J TCGA-77-6843 
        6.64         8.02         3.16         3.98         3.42        73.12 
TCGA-77-7138 TCGA-77-7140 TCGA-77-7142 TCGA-77-7463 TCGA-77-8007 TCGA-77-8143 
       11.18        20.78        42.28        46.78         6.51        26.40 
TCGA-77-8153 TCGA-77-8156 TCGA-77-A5FZ TCGA-85-6175 TCGA-85-6561 TCGA-85-6798 
       55.36         0.33       126.18         9.67        12.99         1.12 
TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 
        1.61         0.03         1.15         1.97         0.85         1.97 
TCGA-85-8071 TCGA-85-8072 TCGA-85-8277 TCGA-85-8350 TCGA-85-8351 TCGA-85-8352 
       14.07        16.87         0.36         1.97         1.81         2.20 
TCGA-85-8353 TCGA-85-8354 TCGA-85-8355 TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 
        1.78         2.01         2.01         0.69        14.63        13.94 
TCGA-85-8664 TCGA-85-A50M TCGA-90-6837 TCGA-90-7769 TCGA-90-A4EE TCGA-92-7340 
        0.10         0.62        24.92        11.77        10.88         2.70 
TCGA-92-8064 TCGA-94-7557 TCGA-94-7943 TCGA-96-8169 TCGA-96-A4JK TCGA-98-7454 
        5.26         0.16        11.70         6.21         8.98         8.42 
TCGA-98-8020 TCGA-98-8023 TCGA-J1-A4AH TCGA-L3-A524 TCGA-LA-A446 TCGA-MF-A522 
        2.76        10.13         7.30        14.76         1.18         2.73 
TCGA-NC-A5HE 
       56.61 

  17P LOSS MUTATED 17P LOSS WILD-TYPE 
              0.03               0.03 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
            141.34             173.82 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
             14.15              11.77 
[1] "0.0 - 141.3 (14.1)" "0.0 - 173.8 (11.8)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56U 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-43-A56V         TCGA-46-3768         TCGA-46-6025 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-46-6026         TCGA-51-4079         TCGA-51-4080 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-51-4081         TCGA-52-7622         TCGA-52-7809 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-52-7810         TCGA-52-7811         TCGA-52-7812 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-5898 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-56-A49D         TCGA-56-A4BW         TCGA-56-A4BX 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-56-A4BY         TCGA-56-A4ZJ         TCGA-56-A4ZK 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-56-A5DR         TCGA-56-A5DS         TCGA-58-8386 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
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        TCGA-77-8156         TCGA-77-A5FZ         TCGA-77-A5G3 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-77-A5GB         TCGA-77-A5GH         TCGA-85-6175 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" 
[1] "hr=" "1.1"
D70V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  17P LOSS MUTATED         1       42       74        0        30        38
  17P LOSS WILD-TYPE       0       27       62        1        20        32
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  17P LOSS MUTATED           34         12        3
  17P LOSS WILD-TYPE         20          8        2
D70V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  17P LOSS MUTATED    59 140  27   8
  17P LOSS WILD-TYPE  36 110  18  11
D70V4, multiclass
    clus
vv   17P LOSS MUTATED 17P LOSS WILD-TYPE
  T1               59                 36
  T2              140                110
  T3               27                 18
  T4                8                 11
                    vv
clus                  N0  N1  N2  N3
  17P LOSS MUTATED   143  57  26   4
  17P LOSS WILD-TYPE 112  52   8   1
D70V5, multiclass
    clus
vv   17P LOSS MUTATED 17P LOSS WILD-TYPE
  N0              143                112
  N1               57                 52
  N2               26                  8
  N3                4                  1
                    vv
clus                  M0  M1  MX
  17P LOSS MUTATED   201   3  27
  17P LOSS WILD-TYPE 148   2  22
D70V6, multiclass
    clus
vv   17P LOSS MUTATED 17P LOSS WILD-TYPE
  M0              201                148
  M1                3                  2
  MX               27                 22
D70V7, binary
                    cls
clus                   0   1
  17P LOSS MUTATED    59 175
  17P LOSS WILD-TYPE  45 130
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P LOSS MUTATED     59  175
  17P LOSS WILD-TYPE   45  130
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  FEMALE               59                 45
  MALE                175                130
D70V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  17P LOSS MUTATED                                       7
  17P LOSS WILD-TYPE                                     5
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  17P LOSS MUTATED                                        2
  17P LOSS WILD-TYPE                                      4
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  17P LOSS MUTATED                                         1
  17P LOSS WILD-TYPE                                       0
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  17P LOSS MUTATED                                                           224
  17P LOSS WILD-TYPE                                                         166
D70V9, multiclass
                                                             clus
vv                                                            17P LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      7
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     2
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              224
                                                             clus
vv                                                            17P LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                        5
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       4
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                166
D70V10, binary
                    cls
clus                   0   1
  17P LOSS MUTATED    10 224
  17P LOSS WILD-TYPE   3 172
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P LOSS MUTATED     10  224
  17P LOSS WILD-TYPE    3  172
     clus
vv    17P LOSS MUTATED 17P LOSS WILD-TYPE
  NO                10                  3
  YES              224                172
D70V11, continuous
D70V12, continuous
                    vv
clus                  R0  R1  R2  RX
  17P LOSS MUTATED   200   5   2   8
  17P LOSS WILD-TYPE 132   3   2  10
D70V13, multiclass
    clus
vv   17P LOSS MUTATED 17P LOSS WILD-TYPE
  R0              200                132
  R1                5                  3
  R2                2                  2
  RX                8                 10

Clustering(71) Variable = 17Q LOSS MUTATION ANALYSIS
D71V1, survival
                    sevent
clus2                  0   1
  17Q LOSS MUTATED    46  24
  17Q LOSS WILD-TYPE 198 115
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                70                313 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                24                115 
$`17Q LOSS MUTATED`
TCGA-18-3414 TCGA-21-1070 TCGA-21-A5DI TCGA-22-1011 TCGA-22-1016 TCGA-22-4595 
       13.02       119.54        32.19         1.74        27.02        24.13 
TCGA-22-4596 TCGA-22-4605 TCGA-22-5472 TCGA-22-5478 TCGA-33-4583 TCGA-33-4587 
        0.56        32.02        64.93         0.79       141.34        54.44 
TCGA-34-2600 TCGA-34-5241 TCGA-37-4141 TCGA-39-5029 TCGA-39-5035 TCGA-39-5040 
       61.61        14.07         0.39        24.33        15.58        17.06 
TCGA-43-2581 TCGA-43-3394 TCGA-43-5670 TCGA-43-7656 TCGA-43-A56U TCGA-43-A56V 
       38.66        27.02        18.05         6.97        14.20        12.03 
TCGA-52-7622 TCGA-52-7810 TCGA-56-5897 TCGA-56-5898 TCGA-56-7580 TCGA-56-7822 
       17.79        30.35         0.10        18.25         1.32         0.03 
TCGA-56-8503 TCGA-56-8624 TCGA-56-8628 TCGA-56-A4ZJ TCGA-58-8393 TCGA-60-2695 
        1.35         1.18         0.53         0.82        34.78        21.11 
TCGA-60-2696 TCGA-60-2706 TCGA-60-2708 TCGA-60-2711 TCGA-60-2714 TCGA-60-2719 
        3.58        92.71        80.45        41.42        50.33        42.64 
TCGA-60-2720 TCGA-60-2723 TCGA-66-2769 TCGA-66-2771 TCGA-66-2780 TCGA-66-2782 
        3.19        35.90         7.07        19.00        12.03        12.00 
TCGA-66-2786 TCGA-77-8008 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8138 
       25.97        86.76        82.92        12.59        53.92        17.72 
TCGA-77-8144 TCGA-77-8150 TCGA-77-A5GB TCGA-77-A5GH TCGA-85-7696 TCGA-85-7697 
       27.39        54.41        30.81        23.44         0.59         0.33 
TCGA-85-7950 TCGA-85-8479 TCGA-85-A513 TCGA-85-A53L TCGA-92-8063 TCGA-92-8065 
        1.97         0.72         0.79         0.43         4.01         2.30 
TCGA-94-7557 TCGA-96-A4JL TCGA-98-8021 TCGA-L3-A4E7 
        0.16         6.02        13.58         1.15 

$`17Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.01        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       11.34        59.51        28.34        24.92         1.64        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1071 
        6.15         2.79        90.54         3.02        27.19        46.88 
TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 
       99.16        70.16        60.89        34.78        15.58        31.73 
TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 
      122.43         9.34       119.80         8.78        31.63        88.11 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 
       41.69        33.93        10.82        19.99         7.33        14.93 
TCGA-22-1002 TCGA-22-1005 TCGA-22-1012 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 
        4.31        64.21        14.10        48.82        20.48        35.08 
TCGA-22-4594 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4609 
       48.33        38.17        34.75        13.12        19.30         9.57 
TCGA-22-4613 TCGA-22-5471 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5479 
       11.77        31.73        63.55        14.63        44.25        54.28 
TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 
       71.34        79.20        11.74        18.84        30.12        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-22-A5C4 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       56.32        16.64         0.95         7.63       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4586 TCGA-33-4589 TCGA-33-6737 
       43.10       173.82       103.53        14.07        10.82        19.76 
TCGA-33-6738 TCGA-34-2596 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 
       27.02         2.63        31.50        28.96        32.88        31.27 
TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 
       50.24        67.79        56.38         9.07        23.24        12.00 
TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 
       30.94        18.15         4.96         1.12         3.95         0.43 
TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 
        0.39         6.58         8.12         7.46         7.82         6.81 
TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 
        3.39        47.80        74.07        44.75        68.58        55.20 
TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 
       70.03        60.79         1.71         1.94        27.39        36.39 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 TCGA-43-3920 
       35.64        35.70        17.88        40.21        22.49        33.11 
TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 
       11.47        12.36        24.89        10.19         5.46         3.81 
TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 TCGA-43-A474 
        7.76        66.51        13.38        11.77         2.93        11.61 
TCGA-43-A475 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
        9.73         9.99        10.65        13.91         0.39         0.39 
TCGA-51-4081 TCGA-52-7809 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-6545 
       29.95         5.46         8.75        27.45        28.96         2.04 
TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7582 
        0.62         0.99         0.43         0.99         1.45         0.85 
TCGA-56-7730 TCGA-56-8504 TCGA-56-8622 TCGA-56-8625 TCGA-56-8626 TCGA-56-8629 
        0.20         5.85         1.81         2.07         0.56         1.12 
TCGA-56-A49D TCGA-56-A4BW TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A4ZK TCGA-56-A5DR 
        1.25         0.07         1.51         0.99         0.13         0.13 
TCGA-56-A5DS TCGA-58-8386 TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 
        0.26         0.03        13.25        12.43        29.95        71.24 
TCGA-58-8392 TCGA-58-A46J TCGA-58-A46K TCGA-58-A46L TCGA-58-A46M TCGA-58-A46N 
       16.47        64.87        34.36        36.59        23.24        17.75 
TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2707 TCGA-60-2709 
       12.23        10.22        96.82        37.94        21.73        49.48 
TCGA-60-2710 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2716 TCGA-60-2721 
       66.54         9.01        56.91        35.34        48.49        32.32 
TCGA-60-2722 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 
       29.85        23.57        26.83        11.77        16.96        43.10 
TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 
        2.01        21.07         0.99         1.02         2.01         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        0.99         0.99        21.01        25.05         0.99         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2773 TCGA-66-2777 
        1.02         2.01         2.01        23.01         3.02         2.01 
TCGA-66-2778 TCGA-66-2781 TCGA-66-2783 TCGA-66-2785 TCGA-66-2787 TCGA-66-2788 
       19.00         3.98        24.95         1.97        40.01        22.98 
TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
        4.04        22.98         5.03        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 
        4.01        49.05         2.73         6.64         6.94         8.02 
TCGA-68-8251 TCGA-68-A59I TCGA-68-A59J TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 
        3.16         3.98         3.42        29.56        73.12        75.09 
TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 
       23.28        11.18        89.98        20.78         0.49        42.28 
TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 
       70.13       106.95         0.16        46.78        15.75         6.51 
TCGA-77-8009 TCGA-77-8128 TCGA-77-8136 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 
       53.95        37.81        39.09       104.09        11.54        26.40 
TCGA-77-8145 TCGA-77-8148 TCGA-77-8153 TCGA-77-8154 TCGA-77-8156 TCGA-77-A5FZ 
        6.97         9.63        55.36        35.90         0.33       126.18 
TCGA-77-A5G3 TCGA-85-6175 TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 TCGA-85-7698 
      117.57         9.67         0.36        12.99         1.12         1.61 
TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 
        0.03         1.15         1.25         0.85         1.97         0.53 
TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 
       16.77        14.07        16.87         0.43         0.36         1.45 
TCGA-85-8288 TCGA-85-8350 TCGA-85-8351 TCGA-85-8352 TCGA-85-8353 TCGA-85-8354 
        1.78         1.97         1.81         2.20         1.78         2.01 
TCGA-85-8355 TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 TCGA-85-8666 
        2.01         0.69        14.63        13.94         0.10        15.62 
TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A50M TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 
        0.49         0.82         0.62        24.92         9.50         2.93 
TCGA-90-7769 TCGA-90-7964 TCGA-90-A4ED TCGA-90-A4EE TCGA-92-7340 TCGA-92-7341 
       11.77        14.07         8.02        10.88         2.70         3.48 
TCGA-92-8064 TCGA-94-7033 TCGA-94-7943 TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 
        5.26         2.86        11.70        39.88        44.19         6.21 
TCGA-96-8170 TCGA-96-A4JK TCGA-98-7454 TCGA-98-8020 TCGA-98-8022 TCGA-98-8023 
        6.94         8.98         8.42         2.76         7.36        10.13 
TCGA-J1-A4AH TCGA-L3-A524 TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HG 
        7.30        14.76         1.18         2.73        56.61        50.89 
TCGA-NC-A5HI 
       37.32 

  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
              0.03               0.03 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
            141.34             173.82 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
             16.32              12.43 
[1] "0.0 - 141.3 (16.3)" "0.0 - 173.8 (12.4)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
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"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56U 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-43-A56V         TCGA-46-3768         TCGA-46-6025 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-46-6026         TCGA-51-4079         TCGA-51-4080 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-51-4081         TCGA-52-7622         TCGA-52-7809 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-52-7810         TCGA-52-7811         TCGA-52-7812 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-5898 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-56-A49D         TCGA-56-A4BW         TCGA-56-A4BX 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-56-A4BY         TCGA-56-A4ZJ         TCGA-56-A4ZK 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-56-A5DR         TCGA-56-A5DS         TCGA-58-8386 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-68-A59I 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-68-A59J         TCGA-77-6842         TCGA-77-6843 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8153         TCGA-77-8154 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5FZ         TCGA-77-A5G3 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-77-A5GB         TCGA-77-A5GH         TCGA-85-6175 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D71V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  17Q LOSS MUTATED         1       17       28        0         8        12
  17Q LOSS WILD-TYPE       0       52      108        1        42        58
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  17Q LOSS MUTATED            8          1        1
  17Q LOSS WILD-TYPE         46         19        4
D71V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  17Q LOSS MUTATED    23  40  11   2
  17Q LOSS WILD-TYPE  72 210  34  17
D71V4, multiclass
    clus
vv   17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  T1               23                 72
  T2               40                210
  T3               11                 34
  T4                2                 17
                    vv
clus                  N0  N1  N2  N3
  17Q LOSS MUTATED    57  11   5   0
  17Q LOSS WILD-TYPE 198  98  29   5
D71V5, multiclass
    clus
vv   17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  N0               57                198
  N1               11                 98
  N2                5                 29
  N3                0                  5
                    vv
clus                  M0  M1  MX
  17Q LOSS MUTATED    66   1   8
  17Q LOSS WILD-TYPE 283   4  41
D71V6, multiclass
    clus
vv   17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  M0               66                283
  M1                1                  4
  MX                8                 41
D71V7, binary
                    cls
clus                   0   1
  17Q LOSS MUTATED    28  48
  17Q LOSS WILD-TYPE  76 257
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q LOSS MUTATED     28   48
  17Q LOSS WILD-TYPE   76  257
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  FEMALE               28                 76
  MALE                 48                257
D71V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  17Q LOSS MUTATED                                       1
  17Q LOSS WILD-TYPE                                    11
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  17Q LOSS MUTATED                                        1
  17Q LOSS WILD-TYPE                                      5
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  17Q LOSS MUTATED                                         1
  17Q LOSS WILD-TYPE                                       0
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  17Q LOSS MUTATED                                                            73
  17Q LOSS WILD-TYPE                                                         317
D71V9, multiclass
                                                             clus
vv                                                            17Q LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      1
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               73
                                                             clus
vv                                                            17Q LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       11
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                317
D71V10, binary
                    cls
clus                   0   1
  17Q LOSS MUTATED     4  72
  17Q LOSS WILD-TYPE   9 324
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q LOSS MUTATED      4   72
  17Q LOSS WILD-TYPE    9  324
     clus
vv    17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  NO                 4                  9
  YES               72                324
D71V11, continuous
D71V12, continuous
                    vv
clus                  R0  R1  R2  RX
  17Q LOSS MUTATED    63   1   0   4
  17Q LOSS WILD-TYPE 269   7   4  14
D71V13, multiclass
    clus
vv   17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  R0               63                269
  R1                1                  7
  R2                0                  4
  RX                4                 14

Clustering(72) Variable = 18P LOSS MUTATION ANALYSIS
D72V1, survival
                    sevent
clus2                  0   1
  18P LOSS MUTATED    69  36
  18P LOSS WILD-TYPE 175 103
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
               105                278 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                36                103 
$`18P LOSS MUTATED`
TCGA-18-3414 TCGA-18-3415 TCGA-18-3417 TCGA-18-3421 TCGA-21-1070 TCGA-21-1071 
       13.02        59.51        24.92        43.76       119.54        46.88 
TCGA-21-1080 TCGA-21-5787 TCGA-21-A5DI TCGA-22-1000 TCGA-22-1012 TCGA-22-1016 
      122.43        10.82        32.19        14.93        14.10        27.02 
TCGA-22-1017 TCGA-22-4593 TCGA-22-4594 TCGA-22-4601 TCGA-22-5478 TCGA-22-5482 
       48.82        35.08        48.33        34.75         0.79        11.74 
TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4582 TCGA-33-4589 TCGA-33-6737 
      114.05        97.94        43.10       103.53        10.82        19.76 
TCGA-33-6738 TCGA-34-2608 TCGA-34-2609 TCGA-34-5241 TCGA-34-7107 TCGA-37-4130 
       27.02        32.88        31.27        14.07         1.12         8.12 
TCGA-37-4132 TCGA-37-4133 TCGA-39-5011 TCGA-39-5028 TCGA-39-5036 TCGA-43-3394 
        7.46         7.82        47.80         1.71        35.64        27.02 
TCGA-43-6647 TCGA-43-7656 TCGA-43-8115 TCGA-46-3768 TCGA-46-6025 TCGA-51-4079 
       24.89         6.97        13.38         9.99        10.65         0.39 
TCGA-52-7810 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-7221 TCGA-56-7222 
       30.35        28.96         0.10         2.04         0.99         0.43 
TCGA-56-8503 TCGA-56-8624 TCGA-56-8626 TCGA-56-8629 TCGA-56-A4BW TCGA-56-A4ZK 
        1.35         1.18         0.56         1.12         0.07         0.13 
TCGA-58-A46K TCGA-58-A46M TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2720 
       34.36        23.24        92.71        21.73        80.45         3.19 
TCGA-66-2744 TCGA-66-2753 TCGA-66-2755 TCGA-66-2766 TCGA-66-2773 TCGA-66-2780 
        0.99         1.02         0.92         1.02         3.02        12.03 
TCGA-66-2781 TCGA-66-2785 TCGA-66-2786 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 
        3.98         1.97        25.97        22.98         5.03        30.02 
TCGA-66-2795 TCGA-68-7757 TCGA-68-8250 TCGA-77-6842 TCGA-77-8007 TCGA-77-8131 
        4.01         6.94         8.02        29.56         6.51        12.59 
TCGA-77-8136 TCGA-77-8139 TCGA-77-8140 TCGA-77-8144 TCGA-77-A5GH TCGA-85-6175 
       39.09       104.09        11.54        27.39        23.44         9.67 
TCGA-85-6560 TCGA-85-7697 TCGA-85-7950 TCGA-85-8287 TCGA-85-8355 TCGA-85-8481 
        0.36         0.33         1.97         1.45         2.01         0.69 
TCGA-85-A4QR TCGA-85-A53L TCGA-90-7766 TCGA-90-7767 TCGA-90-A4ED TCGA-92-7341 
        0.82         0.43         9.50         2.93         8.02         3.48 
TCGA-94-7557 TCGA-94-7943 TCGA-96-8170 TCGA-96-A4JK TCGA-98-8020 TCGA-98-8023 
        0.16        11.70         6.94         8.98         2.76        10.13 
TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HG 
        2.73        56.61        50.89 

$`18P LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.01        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3416 TCGA-18-3419 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 
       11.34        28.34         1.64         6.15         2.79        90.54 
TCGA-18-5592 TCGA-18-5595 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 
        3.02        27.19        99.16        70.16        60.89        34.78 
TCGA-21-1078 TCGA-21-1079 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 
       15.58        31.73         9.34       119.80         8.78        31.63 
TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 TCGA-22-0940 TCGA-22-0944 TCGA-22-1002 
       88.11        41.69        33.93        19.99         7.33         4.31 
TCGA-22-1005 TCGA-22-1011 TCGA-22-4591 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 
       64.21         1.74        20.48        24.13         0.56        38.17 
TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 
       13.12        32.02        19.30         9.57        11.77        31.73 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5479 TCGA-22-5480 
       64.93        63.55        14.63        44.25        54.28        71.34 
TCGA-22-5481 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 
       79.20        18.84        30.12        62.86        56.32        16.64 
TCGA-22-A5C4 TCGA-33-4532 TCGA-33-4566 TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 
        0.95         7.63       173.82       141.34        14.07        54.44 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-5231 TCGA-34-5232 
        2.63        61.61        31.50        28.96        50.24        67.79 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5927 TCGA-34-5928 
       56.38         9.07        23.24        12.00        30.94        18.15 
TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4135 
        4.96         3.95         0.43         0.39         6.58         6.81 
TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 
        0.39         3.39        74.07        44.75        68.58        55.20 
TCGA-39-5024 TCGA-39-5027 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 
       70.03        60.79        24.33         1.94        27.39        36.39 
TCGA-39-5035 TCGA-39-5037 TCGA-39-5039 TCGA-39-5040 TCGA-43-2576 TCGA-43-2578 
       15.58        35.70        17.88        17.06        40.21        22.49 
TCGA-43-2581 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 TCGA-43-6770 
       38.66        33.11        11.47        18.05        12.36        10.19 
TCGA-43-6771 TCGA-43-6773 TCGA-43-7657 TCGA-43-7658 TCGA-43-8116 TCGA-43-8118 
        5.46         3.81         7.76        66.51        11.77         2.93 
TCGA-43-A474 TCGA-43-A475 TCGA-43-A56U TCGA-43-A56V TCGA-46-6026 TCGA-51-4080 
       11.61         9.73        14.20        12.03        13.91         0.39 
TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7811 TCGA-52-7812 TCGA-56-5898 
       29.95        17.79         5.46         8.75        27.45        18.25 
TCGA-56-6546 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 
        0.62         0.99         1.45         1.32         0.85         0.20 
TCGA-56-7822 TCGA-56-8504 TCGA-56-8622 TCGA-56-8625 TCGA-56-8628 TCGA-56-A49D 
        0.03         5.85         1.81         2.07         0.53         1.25 
TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A5DR TCGA-56-A5DS TCGA-58-8386 
        1.51         0.99         0.82         0.13         0.26         0.03 
TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 TCGA-58-8393 
       13.25        12.43        29.95        71.24        16.47        34.78 
TCGA-58-A46J TCGA-58-A46L TCGA-58-A46N TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 
       64.87        36.59        17.75        21.11         3.58        12.23 
TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       10.22        96.82        37.94        49.48        66.54        41.42 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 
        9.01        56.91        50.33        35.34        48.49        42.64 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 
       32.32        29.85        35.90        23.57        26.83        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2754 TCGA-66-2756 
       16.96        43.10         2.01        21.07         2.01         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2767 
        0.99        21.01        25.05         0.99         2.01         2.01 
TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2777 TCGA-66-2778 
        2.01         7.07        23.01        19.00         2.01        19.00 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2793 
       12.00        24.95        40.01        22.98         4.04        10.06 
TCGA-66-2794 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-8251 TCGA-68-A59I 
       54.08        49.05         2.73         6.64         3.16         3.98 
TCGA-68-A59J TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 
        3.42        73.12        75.09        23.28        11.18        89.98 
TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 
       20.78         0.49        42.28        70.13       106.95         0.16 
TCGA-77-7463 TCGA-77-7465 TCGA-77-8008 TCGA-77-8009 TCGA-77-8128 TCGA-77-8130 
       46.78        15.75        86.76        53.95        37.81        82.92 
TCGA-77-8133 TCGA-77-8138 TCGA-77-8143 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 
       53.92        17.72        26.40         6.97         9.63        54.41 
TCGA-77-8153 TCGA-77-8154 TCGA-77-8156 TCGA-77-A5FZ TCGA-77-A5G3 TCGA-77-A5GB 
       55.36        35.90         0.33       126.18       117.57        30.81 
TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 
       12.99         1.12         0.59         1.61         0.03         1.15 
TCGA-85-7844 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 
        1.25         0.85         1.97         0.53        16.77        14.07 
TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 TCGA-85-8288 TCGA-85-8350 TCGA-85-8351 
       16.87         0.43         0.36         1.78         1.97         1.81 
TCGA-85-8352 TCGA-85-8353 TCGA-85-8354 TCGA-85-8479 TCGA-85-8580 TCGA-85-8582 
        2.20         1.78         2.01         0.72        14.63        13.94 
TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL TCGA-85-A50M TCGA-85-A513 TCGA-90-6837 
        0.10        15.62         0.49         0.62         0.79        24.92 
TCGA-90-7769 TCGA-90-7964 TCGA-90-A4EE TCGA-92-7340 TCGA-92-8063 TCGA-92-8064 
       11.77        14.07        10.88         2.70         4.01         5.26 
TCGA-92-8065 TCGA-94-7033 TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 TCGA-96-A4JL 
        2.30         2.86        39.88        44.19         6.21         6.02 
TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-L3-A524 
        8.42        13.58         7.36         7.30         1.15        14.76 
TCGA-LA-A446 TCGA-NC-A5HI 
        1.18        37.32 

  18P LOSS MUTATED 18P LOSS WILD-TYPE 
              0.07               0.03 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
            122.43             173.82 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
             10.82              14.63 
[1] "0.1 - 122.4 (10.8)" "0.0 - 173.8 (14.6)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
  "18P LOSS MUTATED"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56U 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-43-A56V         TCGA-46-3768         TCGA-46-6025 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-46-6026         TCGA-51-4079         TCGA-51-4080 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-51-4081         TCGA-52-7622         TCGA-52-7809 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-52-7810         TCGA-52-7811         TCGA-52-7812 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-5898 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-56-A49D         TCGA-56-A4BW         TCGA-56-A4BX 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-56-A4BY         TCGA-56-A4ZJ         TCGA-56-A4ZK 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-56-A5DR         TCGA-56-A5DS         TCGA-58-8386 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-68-8250         TCGA-68-8251         TCGA-68-A59I 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-68-A59J         TCGA-77-6842         TCGA-77-6843 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8153         TCGA-77-8154 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5FZ         TCGA-77-A5G3 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-77-A5GB         TCGA-77-A5GH         TCGA-85-6175 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
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  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
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  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
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  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
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"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
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  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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  "18P LOSS MUTATED"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
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"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
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  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
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  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
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"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
  "18P LOSS MUTATED"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56U 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-43-A56V         TCGA-46-3768         TCGA-46-6025 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-46-6026         TCGA-51-4079         TCGA-51-4080 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-51-4081         TCGA-52-7622         TCGA-52-7809 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-52-7810         TCGA-52-7811         TCGA-52-7812 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-5898 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-56-A49D         TCGA-56-A4BW         TCGA-56-A4BX 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-56-A4BY         TCGA-56-A4ZJ         TCGA-56-A4ZK 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-56-A5DR         TCGA-56-A5DS         TCGA-58-8386 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-68-8250         TCGA-68-8251         TCGA-68-A59I 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-68-A59J         TCGA-77-6842         TCGA-77-6843 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8153         TCGA-77-8154 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5FZ         TCGA-77-A5G3 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-77-A5GB         TCGA-77-A5GH         TCGA-85-6175 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D72V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  18P LOSS MUTATED         1       14       37        1        11        22
  18P LOSS WILD-TYPE       0       55       99        0        39        48
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  18P LOSS MUTATED           14          3        3
  18P LOSS WILD-TYPE         40         17        2
D72V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  18P LOSS MUTATED    19  73  11   5
  18P LOSS WILD-TYPE  76 177  34  14
D72V4, multiclass
    clus
vv   18P LOSS MUTATED 18P LOSS WILD-TYPE
  T1               19                 76
  T2               73                177
  T3               11                 34
  T4                5                 14
                    vv
clus                  N0  N1  N2  N3
  18P LOSS MUTATED    68  28   9   1
  18P LOSS WILD-TYPE 187  81  25   4
D72V5, multiclass
    clus
vv   18P LOSS MUTATED 18P LOSS WILD-TYPE
  N0               68                187
  N1               28                 81
  N2                9                 25
  N3                1                  4
                    vv
clus                  M0  M1  MX
  18P LOSS MUTATED    86   3  16
  18P LOSS WILD-TYPE 263   2  33
D72V6, multiclass
    clus
vv   18P LOSS MUTATED 18P LOSS WILD-TYPE
  M0               86                263
  M1                3                  2
  MX               16                 33
D72V7, binary
                    cls
clus                   0   1
  18P LOSS MUTATED    24  84
  18P LOSS WILD-TYPE  80 221
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P LOSS MUTATED     24   84
  18P LOSS WILD-TYPE   80  221
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  FEMALE               24                 80
  MALE                 84                221
D72V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  18P LOSS MUTATED                                       2
  18P LOSS WILD-TYPE                                    10
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  18P LOSS MUTATED                                        2
  18P LOSS WILD-TYPE                                      4
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  18P LOSS MUTATED                                         0
  18P LOSS WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  18P LOSS MUTATED                                                           104
  18P LOSS WILD-TYPE                                                         286
D72V9, multiclass
                                                             clus
vv                                                            18P LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      2
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     2
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              104
                                                             clus
vv                                                            18P LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       10
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       4
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                286
D72V10, binary
                    cls
clus                   0   1
  18P LOSS MUTATED     1 107
  18P LOSS WILD-TYPE  12 289
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P LOSS MUTATED      1  107
  18P LOSS WILD-TYPE   12  289
     clus
vv    18P LOSS MUTATED 18P LOSS WILD-TYPE
  NO                 1                 12
  YES              107                289
D72V11, continuous
D72V12, continuous
                    vv
clus                  R0  R1  R2  RX
  18P LOSS MUTATED    85   2   0   4
  18P LOSS WILD-TYPE 247   6   4  14
D72V13, multiclass
    clus
vv   18P LOSS MUTATED 18P LOSS WILD-TYPE
  R0               85                247
  R1                2                  6
  R2                0                  4
  RX                4                 14

Clustering(73) Variable = 18Q LOSS MUTATION ANALYSIS
D73V1, survival
                    sevent
clus2                  0   1
  18Q LOSS MUTATED    94  42
  18Q LOSS WILD-TYPE 150  97
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
               136                247 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                42                 97 
$`18Q LOSS MUTATED`
TCGA-18-3412 TCGA-18-3414 TCGA-18-3416 TCGA-18-3417 TCGA-18-3421 TCGA-21-1070 
       11.34        13.02        28.34        24.92        43.76       119.54 
TCGA-21-1071 TCGA-21-1079 TCGA-21-1080 TCGA-21-5782 TCGA-21-5786 TCGA-21-5787 
       46.88        31.73       122.43        31.63        33.93        10.82 
TCGA-21-A5DI TCGA-22-1000 TCGA-22-1016 TCGA-22-1017 TCGA-22-4593 TCGA-22-4599 
       32.19        14.93        27.02        48.82        35.08        38.17 
TCGA-22-4601 TCGA-22-5473 TCGA-22-A5C4 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       34.75        63.55         0.95       114.05        97.94        43.10 
TCGA-33-4583 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2608 TCGA-34-5231 
      141.34        10.82        19.76        27.02        32.88        50.24 
TCGA-34-5241 TCGA-37-3789 TCGA-37-3792 TCGA-37-4130 TCGA-37-4133 TCGA-39-5011 
       14.07         0.43         0.39         8.12         7.82        47.80 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5036 TCGA-43-2576 TCGA-43-3394 TCGA-43-5668 
       60.79         1.71        35.64        40.21        27.02        11.47 
TCGA-43-6647 TCGA-43-7656 TCGA-46-3768 TCGA-46-6025 TCGA-51-4079 TCGA-52-7810 
       24.89         6.97         9.99        10.65         0.39        30.35 
TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-7221 TCGA-56-7222 
       27.45        28.96         0.10         2.04         0.99         0.43 
TCGA-56-7223 TCGA-56-8503 TCGA-56-8624 TCGA-56-8626 TCGA-56-8629 TCGA-56-A4BW 
        0.99         1.35         1.18         0.56         1.12         0.07 
TCGA-56-A4BY TCGA-56-A4ZK TCGA-56-A5DR TCGA-58-8386 TCGA-58-A46K TCGA-58-A46M 
        0.99         0.13         0.13         0.03        34.36        23.24 
TCGA-60-2696 TCGA-60-2698 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2714 
        3.58        10.22        92.71        21.73        80.45        50.33 
TCGA-60-2720 TCGA-60-2726 TCGA-66-2734 TCGA-66-2744 TCGA-66-2753 TCGA-66-2763 
        3.19        11.77        43.10         0.99         1.02         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2768 TCGA-66-2773 TCGA-66-2780 TCGA-66-2781 
        2.01         1.02         2.01         3.02        12.03         3.98 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2795 
        1.97        25.97        22.98         5.03        30.02         4.01 
TCGA-68-7757 TCGA-68-8250 TCGA-68-A59J TCGA-77-6842 TCGA-77-7337 TCGA-77-8130 
        6.94         8.02         3.42        29.56       106.95        82.92 
TCGA-77-8131 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8144 
       12.59        39.09        17.72       104.09        11.54        27.39 
TCGA-77-8148 TCGA-77-A5GH TCGA-85-6175 TCGA-85-6560 TCGA-85-7697 TCGA-85-7698 
        9.63        23.44         9.67         0.36         0.33         1.61 
TCGA-85-7844 TCGA-85-8049 TCGA-85-8072 TCGA-85-8276 TCGA-85-8287 TCGA-85-8352 
        1.25         1.97        16.87         0.43         1.45         2.20 
TCGA-85-8353 TCGA-85-8355 TCGA-85-8481 TCGA-85-A53L TCGA-90-7766 TCGA-90-7767 
        1.78         2.01         0.69         0.43         9.50         2.93 
TCGA-90-7769 TCGA-90-A4ED TCGA-92-7341 TCGA-92-8063 TCGA-94-7033 TCGA-94-7557 
       11.77         8.02         3.48         4.01         2.86         0.16 
TCGA-94-7943 TCGA-96-8169 TCGA-96-8170 TCGA-96-A4JK TCGA-98-8020 TCGA-98-8023 
       11.70         6.21         6.94         8.98         2.76        10.13 
TCGA-L3-A524 TCGA-NC-A5HE TCGA-NC-A5HG TCGA-NC-A5HI 
       14.76        56.61        50.89        37.32 

$`18Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.01        79.46         4.80        46.52 
TCGA-18-3415 TCGA-18-3419 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 
       59.51         1.64         6.15         2.79        90.54         3.02 
TCGA-18-5595 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 
       27.19        99.16        70.16        60.89        34.78        15.58 
TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5783 TCGA-21-5784 TCGA-22-0940 
        9.34       119.80         8.78        88.11        41.69        19.99 
TCGA-22-0944 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-4591 
        7.33         4.31        64.21         1.74        14.10        20.48 
TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 
       48.33        24.13         0.56        13.12        32.02        19.30 
TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5474 TCGA-22-5477 
        9.57        11.77        31.73        64.93        14.63        44.25 
TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 
        0.79        54.28        71.34        79.20        11.74        18.84 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4566 
       30.12        62.86        56.32        16.64         7.63       173.82 
TCGA-33-4582 TCGA-33-4586 TCGA-33-4587 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 
      103.53        14.07        54.44         2.63        61.61        31.50 
TCGA-34-2605 TCGA-34-2609 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       28.96        31.27        67.79        56.38         9.07        23.24 
TCGA-34-5240 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 
       12.00        30.94        18.15         4.96         1.12         3.95 
TCGA-37-4129 TCGA-37-4132 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 
        6.58         7.46         6.81         0.39         3.39        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5029 TCGA-39-5030 
       44.75        68.58        55.20        70.03        24.33         1.94 
TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5037 TCGA-39-5039 TCGA-39-5040 
       27.39        36.39        15.58        35.70        17.88        17.06 
TCGA-43-2578 TCGA-43-2581 TCGA-43-3920 TCGA-43-5670 TCGA-43-6143 TCGA-43-6770 
       22.49        38.66        33.11        18.05        12.36        10.19 
TCGA-43-6771 TCGA-43-6773 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 
        5.46         3.81         7.76        66.51        13.38        11.77 
TCGA-43-8118 TCGA-43-A474 TCGA-43-A475 TCGA-43-A56U TCGA-43-A56V TCGA-46-6026 
        2.93        11.61         9.73        14.20        12.03        13.91 
TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7811 TCGA-56-5898 
        0.39        29.95        17.79         5.46         8.75        18.25 
TCGA-56-6546 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 
        0.62         1.45         1.32         0.85         0.20         0.03 
TCGA-56-8504 TCGA-56-8622 TCGA-56-8625 TCGA-56-8628 TCGA-56-A49D TCGA-56-A4BX 
        5.85         1.81         2.07         0.53         1.25         1.51 
TCGA-56-A4ZJ TCGA-56-A5DS TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 
        0.82         0.26        13.25        12.43        29.95        71.24 
TCGA-58-8392 TCGA-58-8393 TCGA-58-A46J TCGA-58-A46L TCGA-58-A46N TCGA-60-2695 
       16.47        34.78        64.87        36.59        17.75        21.11 
TCGA-60-2697 TCGA-60-2703 TCGA-60-2704 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       12.23        96.82        37.94        49.48        66.54        41.42 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2721 
        9.01        56.91        35.34        48.49        42.64        32.32 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-66-2727 TCGA-66-2737 
       29.85        35.90        23.57        26.83        16.96         2.01 
TCGA-66-2742 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 
       21.07         2.01         0.92         0.99         0.99        21.01 
TCGA-66-2759 TCGA-66-2767 TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2777 
       25.05         2.01         7.07        23.01        19.00         2.01 
TCGA-66-2778 TCGA-66-2782 TCGA-66-2783 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       19.00        12.00        24.95        40.01        22.98         4.04 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-8251 
       10.06        54.08        49.05         2.73         6.64         3.16 
TCGA-68-A59I TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 
        3.98        73.12        75.09        23.28        11.18        89.98 
TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7338 TCGA-77-7463 
       20.78         0.49        42.28        70.13         0.16        46.78 
TCGA-77-7465 TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 TCGA-77-8128 TCGA-77-8133 
       15.75         6.51        86.76        53.95        37.81        53.92 
TCGA-77-8143 TCGA-77-8145 TCGA-77-8150 TCGA-77-8153 TCGA-77-8154 TCGA-77-8156 
       26.40         6.97        54.41        55.36        35.90         0.33 
TCGA-77-A5FZ TCGA-77-A5G3 TCGA-77-A5GB TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 
      126.18       117.57        30.81        12.99         1.12         0.59 
TCGA-85-7699 TCGA-85-7843 TCGA-85-7950 TCGA-85-8048 TCGA-85-8052 TCGA-85-8070 
        0.03         1.15         1.97         0.85         0.53        16.77 
TCGA-85-8071 TCGA-85-8277 TCGA-85-8288 TCGA-85-8350 TCGA-85-8351 TCGA-85-8354 
       14.07         0.36         1.78         1.97         1.81         2.01 
TCGA-85-8479 TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL 
        0.72        14.63        13.94         0.10        15.62         0.49 
TCGA-85-A4QR TCGA-85-A50M TCGA-85-A513 TCGA-90-6837 TCGA-90-7964 TCGA-90-A4EE 
        0.82         0.62         0.79        24.92        14.07        10.88 
TCGA-92-7340 TCGA-92-8064 TCGA-92-8065 TCGA-96-7544 TCGA-96-7545 TCGA-96-A4JL 
        2.70         5.26         2.30        39.88        44.19         6.02 
TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-LA-A446 
        8.42        13.58         7.36         7.30         1.15         1.18 
TCGA-MF-A522 
        2.73 

  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
              0.03               0.03 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
            141.34             173.82 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
             10.82              14.63 
[1] "0.0 - 141.3 (10.8)" "0.0 - 173.8 (14.6)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56U 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-43-A56V         TCGA-46-3768         TCGA-46-6025 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-46-6026         TCGA-51-4079         TCGA-51-4080 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
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"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-68-8250         TCGA-68-8251         TCGA-68-A59I 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-68-A59J         TCGA-77-6842         TCGA-77-6843 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-77-8150         TCGA-77-8153         TCGA-77-8154 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5FZ         TCGA-77-A5G3 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-77-A5GB         TCGA-77-A5GH         TCGA-85-6175 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
[1] "hr=" "1.1"
D73V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  18Q LOSS MUTATED         1       18       49        0        19        29
  18Q LOSS WILD-TYPE       0       51       87        1        31        41
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  18Q LOSS MUTATED           20          3        3
  18Q LOSS WILD-TYPE         34         17        2
D73V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  18Q LOSS MUTATED    27  93  19   5
  18Q LOSS WILD-TYPE  68 157  26  14
D73V4, multiclass
    clus
vv   18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  T1               27                 68
  T2               93                157
  T3               19                 26
  T4                5                 14
                    vv
clus                  N0  N1  N2  N3
  18Q LOSS MUTATED    88  41  11   1
  18Q LOSS WILD-TYPE 167  68  23   4
D73V5, multiclass
    clus
vv   18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  N0               88                167
  N1               41                 68
  N2               11                 23
  N3                1                  4
                    vv
clus                  M0  M1  MX
  18Q LOSS MUTATED   116   3  21
  18Q LOSS WILD-TYPE 233   2  28
D73V6, multiclass
    clus
vv   18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  M0              116                233
  M1                3                  2
  MX               21                 28
D73V7, binary
                    cls
clus                   0   1
  18Q LOSS MUTATED    32 112
  18Q LOSS WILD-TYPE  72 193
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q LOSS MUTATED     32  112
  18Q LOSS WILD-TYPE   72  193
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  FEMALE               32                 72
  MALE                112                193
D73V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  18Q LOSS MUTATED                                       2
  18Q LOSS WILD-TYPE                                    10
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  18Q LOSS MUTATED                                        3
  18Q LOSS WILD-TYPE                                      3
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  18Q LOSS MUTATED                                         0
  18Q LOSS WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  18Q LOSS MUTATED                                                           139
  18Q LOSS WILD-TYPE                                                         251
D73V9, multiclass
                                                             clus
vv                                                            18Q LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      2
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     3
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              139
                                                             clus
vv                                                            18Q LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       10
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       3
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                251
D73V10, binary
                    cls
clus                   0   1
  18Q LOSS MUTATED     3 141
  18Q LOSS WILD-TYPE  10 255
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q LOSS MUTATED      3  141
  18Q LOSS WILD-TYPE   10  255
     clus
vv    18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  NO                 3                 10
  YES              141                255
D73V11, continuous
D73V12, continuous
                    vv
clus                  R0  R1  R2  RX
  18Q LOSS MUTATED   116   2   0   8
  18Q LOSS WILD-TYPE 216   6   4  10
D73V13, multiclass
    clus
vv   18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  R0              116                216
  R1                2                  6
  R2                0                  4
  RX                8                 10

Clustering(74) Variable = 19P LOSS MUTATION ANALYSIS
D74V1, survival
                    sevent
clus2                  0   1
  19P LOSS MUTATED    82  45
  19P LOSS WILD-TYPE 162  94
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
               127                256 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                45                 94 
$`19P LOSS MUTATED`
TCGA-18-3409 TCGA-18-3412 TCGA-18-3417 TCGA-18-5592 TCGA-21-1070 TCGA-21-1071 
       79.46        11.34        24.92         3.02       119.54        46.88 
TCGA-21-1077 TCGA-21-1081 TCGA-21-1083 TCGA-21-5783 TCGA-21-5786 TCGA-21-A5DI 
       34.78         9.34         8.78        88.11        33.93        32.19 
TCGA-22-0940 TCGA-22-1002 TCGA-22-1005 TCGA-22-4594 TCGA-22-4601 TCGA-22-4605 
       19.99         4.31        64.21        48.33        34.75        32.02 
TCGA-22-4607 TCGA-22-5478 TCGA-22-5485 TCGA-22-5492 TCGA-22-A5C4 TCGA-33-4532 
       19.30         0.79        30.12        16.64         0.95         7.63 
TCGA-33-4582 TCGA-33-4587 TCGA-33-6738 TCGA-34-2604 TCGA-34-2608 TCGA-34-5241 
      103.53        54.44        27.02        31.50        32.88        14.07 
TCGA-34-5928 TCGA-34-5929 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 
       18.15         4.96         0.39         6.58         8.12         7.46 
TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 TCGA-39-5029 
        7.82         6.81         0.39         3.39        47.80        24.33 
TCGA-39-5036 TCGA-43-2576 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 
       35.64        40.21        22.49        27.02        33.11        11.47 
TCGA-43-5670 TCGA-43-6771 TCGA-43-7656 TCGA-43-A474 TCGA-43-A56V TCGA-46-6025 
       18.05         5.46         6.97        11.61        12.03        10.65 
TCGA-46-6026 TCGA-51-4081 TCGA-52-7810 TCGA-52-7811 TCGA-56-1622 TCGA-56-5897 
       13.91        29.95        30.35         8.75        28.96         0.10 
TCGA-56-5898 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7730 
       18.25         0.99         0.43         0.99         1.45         0.20 
TCGA-56-7822 TCGA-56-8624 TCGA-56-8629 TCGA-56-A49D TCGA-56-A4BX TCGA-56-A4ZJ 
        0.03         1.18         1.12         1.25         1.51         0.82 
TCGA-56-A5DR TCGA-58-8386 TCGA-58-8388 TCGA-58-8390 TCGA-58-A46L TCGA-60-2696 
        0.13         0.03        12.43        29.95        36.59         3.58 
TCGA-60-2706 TCGA-60-2707 TCGA-60-2711 TCGA-60-2714 TCGA-60-2722 TCGA-60-2723 
       92.71        21.73        41.42        50.33        29.85        35.90 
TCGA-66-2727 TCGA-66-2753 TCGA-66-2756 TCGA-66-2759 TCGA-66-2769 TCGA-66-2780 
       16.96         1.02         0.99        25.05         7.07        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2786 TCGA-66-2788 TCGA-66-2793 TCGA-68-7755 
        3.98        12.00        25.97        22.98        10.06         2.73 
TCGA-68-7756 TCGA-68-8250 TCGA-77-6845 TCGA-77-7138 TCGA-77-7338 TCGA-77-7463 
        6.64         8.02        23.28        11.18         0.16        46.78 
TCGA-77-8136 TCGA-77-8138 TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 TCGA-77-8156 
       39.09        17.72        26.40        27.39         6.97         0.33 
TCGA-85-6560 TCGA-85-7697 TCGA-85-8070 TCGA-85-8072 TCGA-85-8276 TCGA-85-8287 
        0.36         0.33        16.77        16.87         0.43         1.45 
TCGA-85-8351 TCGA-85-A4CL TCGA-85-A53L TCGA-90-7964 TCGA-90-A4ED TCGA-92-7341 
        1.81         0.49         0.43        14.07         8.02         3.48 
TCGA-92-8063 TCGA-94-7557 TCGA-94-7943 TCGA-96-8169 TCGA-L3-A524 TCGA-NC-A5HG 
        4.01         0.16        11.70         6.21        14.76        50.89 
TCGA-NC-A5HI 
       37.32 

$`19P LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3414 
       12.16         4.47        81.01         4.80        46.52        13.02 
TCGA-18-3415 TCGA-18-3416 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 
       59.51        28.34         1.64        43.76         6.15         2.79 
TCGA-18-4721 TCGA-18-5595 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1078 
       90.54        27.19        99.16        70.16        60.89        15.58 
TCGA-21-1079 TCGA-21-1080 TCGA-21-1082 TCGA-21-5782 TCGA-21-5784 TCGA-21-5787 
       31.73       122.43       119.80        31.63        41.69        10.82 
TCGA-22-0944 TCGA-22-1000 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 
        7.33        14.93         1.74        14.10        27.02        48.82 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4604 
       20.48        35.08        24.13         0.56        38.17        13.12 
TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
        9.57        11.77        31.73        64.93        63.55        14.63 
TCGA-22-5477 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 
       44.25        54.28        71.34        79.20        11.74        18.84 
TCGA-22-5489 TCGA-22-5491 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 
       62.86        56.32       114.05        97.94        43.10       173.82 
TCGA-33-4583 TCGA-33-4586 TCGA-33-4589 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 
      141.34        14.07        10.82        19.76         2.63        61.61 
TCGA-34-2605 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       28.96        31.27        50.24        67.79        56.38         9.07 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5927 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 
       23.24        12.00        30.94         1.12         3.95         0.43 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.75        68.58        55.20        70.03        60.79 
TCGA-39-5028 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5037 
        1.71         1.94        27.39        36.39        15.58        35.70 
TCGA-39-5039 TCGA-39-5040 TCGA-43-2581 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       17.88        17.06        38.66        12.36        24.89        10.19 
TCGA-43-6773 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 
        3.81         7.76        66.51        13.38        11.77         2.93 
TCGA-43-A475 TCGA-43-A56U TCGA-46-3768 TCGA-51-4079 TCGA-51-4080 TCGA-52-7622 
        9.73        14.20         9.99         0.39         0.39        17.79 
TCGA-52-7809 TCGA-52-7812 TCGA-56-6545 TCGA-56-6546 TCGA-56-7580 TCGA-56-7582 
        5.46        27.45         2.04         0.62         1.32         0.85 
TCGA-56-8503 TCGA-56-8504 TCGA-56-8622 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 
        1.35         5.85         1.81         2.07         0.56         0.53 
TCGA-56-A4BW TCGA-56-A4BY TCGA-56-A4ZK TCGA-56-A5DS TCGA-58-8387 TCGA-58-8391 
        0.07         0.99         0.13         0.26        13.25        71.24 
TCGA-58-8392 TCGA-58-8393 TCGA-58-A46J TCGA-58-A46K TCGA-58-A46M TCGA-58-A46N 
       16.47        34.78        64.87        34.36        23.24        17.75 
TCGA-60-2695 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2708 
       21.11        12.23        10.22        96.82        37.94        80.45 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2716 
       49.48        66.54         9.01        56.91        35.34        48.49 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 
       42.64         3.19        32.32        23.57        26.83        11.77 
TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 
       43.10         2.01        21.07         0.99         2.01         0.92 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 
        0.99        21.01         0.99         2.01         1.02         2.01 
TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        2.01        23.01        19.00         3.02         2.01        19.00 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2787 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 
       24.95         1.97        40.01         4.04        22.98         5.03 
TCGA-66-2792 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7757 TCGA-68-8251 
       30.02        54.08         4.01        49.05         6.94         3.16 
TCGA-68-A59I TCGA-68-A59J TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-7139 
        3.98         3.42        29.56        73.12        75.09        89.98 
TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7465 
       20.78         0.49        42.28        70.13       106.95        15.75 
TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 
        6.51        86.76        53.95        37.81        82.92        12.59 
TCGA-77-8133 TCGA-77-8139 TCGA-77-8140 TCGA-77-8148 TCGA-77-8150 TCGA-77-8153 
       53.92       104.09        11.54         9.63        54.41        55.36 
TCGA-77-8154 TCGA-77-A5FZ TCGA-77-A5G3 TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6175 
       35.90       126.18       117.57        30.81        23.44         9.67 
TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 
       12.99         1.12         0.59         1.61         0.03         1.15 
TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8071 
        1.25         1.97         0.85         1.97         0.53        14.07 
TCGA-85-8277 TCGA-85-8288 TCGA-85-8350 TCGA-85-8352 TCGA-85-8353 TCGA-85-8354 
        0.36         1.78         1.97         2.20         1.78         2.01 
TCGA-85-8355 TCGA-85-8479 TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 
        2.01         0.72         0.69        14.63        13.94         0.10 
TCGA-85-8666 TCGA-85-A4QR TCGA-85-A50M TCGA-85-A513 TCGA-90-6837 TCGA-90-7766 
       15.62         0.82         0.62         0.79        24.92         9.50 
TCGA-90-7767 TCGA-90-7769 TCGA-90-A4EE TCGA-92-7340 TCGA-92-8064 TCGA-92-8065 
        2.93        11.77        10.88         2.70         5.26         2.30 
TCGA-94-7033 TCGA-96-7544 TCGA-96-7545 TCGA-96-8170 TCGA-96-A4JK TCGA-96-A4JL 
        2.86        39.88        44.19         6.94         8.98         6.02 
TCGA-98-7454 TCGA-98-8020 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 TCGA-J1-A4AH 
        8.42         2.76        13.58         7.36        10.13         7.30 
TCGA-L3-A4E7 TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE 
        1.15         1.18         2.73        56.61 

  19P LOSS MUTATED 19P LOSS WILD-TYPE 
              0.03               0.03 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
            119.54             173.82 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
             12.00              14.07 
[1] "0.0 - 119.5 (12.0)" "0.0 - 173.8 (14.1)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56U 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-43-A56V         TCGA-46-3768         TCGA-46-6025 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-46-6026         TCGA-51-4079         TCGA-51-4080 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-51-4081         TCGA-52-7622         TCGA-52-7809 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-52-7810         TCGA-52-7811         TCGA-52-7812 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-5898 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-56-A49D         TCGA-56-A4BW         TCGA-56-A4BX 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-56-A4BY         TCGA-56-A4ZJ         TCGA-56-A4ZK 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-56-A5DR         TCGA-56-A5DS         TCGA-58-8386 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-68-A59I 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-68-A59J         TCGA-77-6842         TCGA-77-6843 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8153         TCGA-77-8154 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5FZ         TCGA-77-A5G3 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-A5GB         TCGA-77-A5GH         TCGA-85-6175 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56U 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-43-A56V         TCGA-46-3768         TCGA-46-6025 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-46-6026         TCGA-51-4079         TCGA-51-4080 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-51-4081         TCGA-52-7622         TCGA-52-7809 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-52-7810         TCGA-52-7811         TCGA-52-7812 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-5898 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-56-A49D         TCGA-56-A4BW         TCGA-56-A4BX 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-56-A4BY         TCGA-56-A4ZJ         TCGA-56-A4ZK 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-56-A5DR         TCGA-56-A5DS         TCGA-58-8386 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-68-A59I 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-68-A59J         TCGA-77-6842         TCGA-77-6843 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8153         TCGA-77-8154 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5FZ         TCGA-77-A5G3 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-A5GB         TCGA-77-A5GH         TCGA-85-6175 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56U 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-43-A56V         TCGA-46-3768         TCGA-46-6025 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-46-6026         TCGA-51-4079         TCGA-51-4080 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-51-4081         TCGA-52-7622         TCGA-52-7809 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-52-7810         TCGA-52-7811         TCGA-52-7812 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-5898 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-56-A49D         TCGA-56-A4BW         TCGA-56-A4BX 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-56-A4BY         TCGA-56-A4ZJ         TCGA-56-A4ZK 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-56-A5DR         TCGA-56-A5DS         TCGA-58-8386 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-68-A59I 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-68-A59J         TCGA-77-6842         TCGA-77-6843 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8153         TCGA-77-8154 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5FZ         TCGA-77-A5G3 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-A5GB         TCGA-77-A5GH         TCGA-85-6175 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" 
[1] "hr=" "1.3"
D74V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  19P LOSS MUTATED         1       22       43        0        21        19
  19P LOSS WILD-TYPE       0       47       93        1        29        51
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  19P LOSS MUTATED           18          6        3
  19P LOSS WILD-TYPE         36         14        2
D74V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  19P LOSS MUTATED    34  80  14   8
  19P LOSS WILD-TYPE  61 170  31  11
D74V4, multiclass
    clus
vv   19P LOSS MUTATED 19P LOSS WILD-TYPE
  T1               34                 61
  T2               80                170
  T3               14                 31
  T4                8                 11
                    vv
clus                  N0  N1  N2  N3
  19P LOSS MUTATED    96  25  13   0
  19P LOSS WILD-TYPE 159  84  21   5
D74V5, multiclass
    clus
vv   19P LOSS MUTATED 19P LOSS WILD-TYPE
  N0               96                159
  N1               25                 84
  N2               13                 21
  N3                0                  5
                    vv
clus                  M0  M1  MX
  19P LOSS MUTATED   113   3  18
  19P LOSS WILD-TYPE 236   2  31
D74V6, multiclass
    clus
vv   19P LOSS MUTATED 19P LOSS WILD-TYPE
  M0              113                236
  M1                3                  2
  MX               18                 31
D74V7, binary
                    cls
clus                   0   1
  19P LOSS MUTATED    30 106
  19P LOSS WILD-TYPE  74 199
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P LOSS MUTATED     30  106
  19P LOSS WILD-TYPE   74  199
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  FEMALE               30                 74
  MALE                106                199
D74V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  19P LOSS MUTATED                                       4
  19P LOSS WILD-TYPE                                     8
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  19P LOSS MUTATED                                        2
  19P LOSS WILD-TYPE                                      4
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  19P LOSS MUTATED                                         1
  19P LOSS WILD-TYPE                                       0
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  19P LOSS MUTATED                                                           129
  19P LOSS WILD-TYPE                                                         261
D74V9, multiclass
                                                             clus
vv                                                            19P LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      4
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     2
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              129
                                                             clus
vv                                                            19P LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                        8
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       4
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                261
D74V10, binary
                    cls
clus                   0   1
  19P LOSS MUTATED     6 130
  19P LOSS WILD-TYPE   7 266
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P LOSS MUTATED      6  130
  19P LOSS WILD-TYPE    7  266
     clus
vv    19P LOSS MUTATED 19P LOSS WILD-TYPE
  NO                 6                  7
  YES              130                266
D74V11, continuous
D74V12, continuous
                    vv
clus                  R0  R1  R2  RX
  19P LOSS MUTATED   106   4   1   5
  19P LOSS WILD-TYPE 226   4   3  13
D74V13, multiclass
    clus
vv   19P LOSS MUTATED 19P LOSS WILD-TYPE
  R0              106                226
  R1                4                  4
  R2                1                  3
  RX                5                 13

Clustering(75) Variable = 19Q LOSS MUTATION ANALYSIS
D75V1, survival
                    sevent
clus2                  0   1
  19Q LOSS MUTATED    59  23
  19Q LOSS WILD-TYPE 185 116
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                82                301 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                23                116 
$`19Q LOSS MUTATED`
TCGA-18-3409 TCGA-18-3412 TCGA-18-3416 TCGA-18-5592 TCGA-21-1077 TCGA-21-A5DI 
       79.46        11.34        28.34         3.02        34.78        32.19 
TCGA-22-0940 TCGA-22-0944 TCGA-22-1005 TCGA-22-4594 TCGA-22-4607 TCGA-22-4613 
       19.99         7.33        64.21        48.33        19.30        11.77 
TCGA-22-A5C4 TCGA-33-4532 TCGA-33-4586 TCGA-33-4587 TCGA-34-5929 TCGA-37-4129 
        0.95         7.63        14.07        54.44         4.96         6.58 
TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-39-5036 TCGA-43-3394 TCGA-43-6771 
        7.82         6.81         0.39        35.64        27.02         5.46 
TCGA-43-7656 TCGA-43-A474 TCGA-46-6025 TCGA-46-6026 TCGA-51-4081 TCGA-52-7810 
        6.97        11.61        10.65        13.91        29.95        30.35 
TCGA-52-7811 TCGA-56-1622 TCGA-56-5897 TCGA-56-5898 TCGA-56-7221 TCGA-56-7222 
        8.75        28.96         0.10        18.25         0.99         0.43 
TCGA-56-7579 TCGA-56-7822 TCGA-56-A4BX TCGA-58-8386 TCGA-58-A46L TCGA-60-2696 
        1.45         0.03         1.51         0.03        36.59         3.58 
TCGA-60-2706 TCGA-60-2707 TCGA-60-2711 TCGA-60-2714 TCGA-66-2727 TCGA-66-2753 
       92.71        21.73        41.42        50.33        16.96         1.02 
TCGA-66-2756 TCGA-66-2759 TCGA-66-2781 TCGA-66-2782 TCGA-66-2794 TCGA-68-7755 
        0.99        25.05         3.98        12.00        54.08         2.73 
TCGA-68-7756 TCGA-68-8250 TCGA-77-6845 TCGA-77-7338 TCGA-77-7463 TCGA-77-8136 
        6.64         8.02        23.28         0.16        46.78        39.09 
TCGA-77-8143 TCGA-77-8144 TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 TCGA-85-7697 
       26.40        27.39         0.33         0.36        12.99         0.33 
TCGA-85-7843 TCGA-85-7950 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 
        1.15         1.97        16.77        14.07        16.87         0.43 
TCGA-85-8287 TCGA-85-8351 TCGA-85-A4CL TCGA-90-A4ED TCGA-92-8063 TCGA-94-7943 
        1.45         1.81         0.49         8.02         4.01        11.70 
TCGA-L3-A524 TCGA-MF-A522 TCGA-NC-A5HG TCGA-NC-A5HI 
       14.76         2.73        50.89        37.32 

$`19Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3414 
       12.16         4.47        81.01         4.80        46.52        13.02 
TCGA-18-3415 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 
       59.51        24.92         1.64        43.76         6.15         2.79 
TCGA-18-4721 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 
       90.54        27.19       119.54        46.88        99.16        70.16 
TCGA-21-1076 TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 
       60.89        15.58        31.73       122.43         9.34       119.80 
TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 
        8.78        31.63        88.11        41.69        33.93        10.82 
TCGA-22-1000 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 
       14.93         4.31         1.74        14.10        27.02        48.82 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 
       20.48        35.08        24.13         0.56        38.17        34.75 
TCGA-22-4604 TCGA-22-4605 TCGA-22-4609 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        32.02         9.57        31.73        64.93        63.55 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 
       14.63        44.25         0.79        54.28        71.34        79.20 
TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 
       11.74        18.84        30.12        62.86        56.32        16.64 
TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 
      114.05        97.94        43.10       173.82       103.53       141.34 
TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 
       10.82        19.76        27.02         2.63        61.61        31.50 
TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
       28.96        32.88        31.27        50.24        67.79        56.38 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.07        23.24        12.00        14.07        30.94        18.15 
TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4130 TCGA-37-4132 
        1.12         3.95         0.43         0.39         8.12         7.46 
TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 
        3.39        47.80        74.07        44.75        68.58        55.20 
TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 
       70.03        60.79         1.71        24.33         1.94        27.39 
TCGA-39-5034 TCGA-39-5035 TCGA-39-5037 TCGA-39-5039 TCGA-39-5040 TCGA-43-2576 
       36.39        15.58        35.70        17.88        17.06        40.21 
TCGA-43-2578 TCGA-43-2581 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 
       22.49        38.66        33.11        11.47        18.05        12.36 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6773 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 
       24.89        10.19         3.81         7.76        66.51        13.38 
TCGA-43-8116 TCGA-43-8118 TCGA-43-A475 TCGA-43-A56U TCGA-43-A56V TCGA-46-3768 
       11.77         2.93         9.73        14.20        12.03         9.99 
TCGA-51-4079 TCGA-51-4080 TCGA-52-7622 TCGA-52-7809 TCGA-52-7812 TCGA-56-6545 
        0.39         0.39        17.79         5.46        27.45         2.04 
TCGA-56-6546 TCGA-56-7223 TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 TCGA-56-8503 
        0.62         0.99         1.32         0.85         0.20         1.35 
TCGA-56-8504 TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 
        5.85         1.81         1.18         2.07         0.56         0.53 
TCGA-56-8629 TCGA-56-A49D TCGA-56-A4BW TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A4ZK 
        1.12         1.25         0.07         0.99         0.82         0.13 
TCGA-56-A5DR TCGA-56-A5DS TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 
        0.13         0.26        13.25        12.43        29.95        71.24 
TCGA-58-8392 TCGA-58-8393 TCGA-58-A46J TCGA-58-A46K TCGA-58-A46M TCGA-58-A46N 
       16.47        34.78        64.87        34.36        23.24        17.75 
TCGA-60-2695 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2708 
       21.11        12.23        10.22        96.82        37.94        80.45 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2716 
       49.48        66.54         9.01        56.91        35.34        48.49 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 
       42.64         3.19        32.32        29.85        35.90        23.57 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 
       26.83        11.77        43.10         2.01        21.07         0.99 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2757 TCGA-66-2758 TCGA-66-2763 TCGA-66-2765 
        2.01         0.92         0.99        21.01         0.99         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 
        1.02         2.01         2.01         7.07        23.01        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2783 TCGA-66-2785 
        3.02         2.01        19.00        12.03        24.95         1.97 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 
       25.97        40.01        22.98         4.04        22.98         5.03 
TCGA-66-2792 TCGA-66-2793 TCGA-66-2795 TCGA-66-2800 TCGA-68-7757 TCGA-68-8251 
       30.02        10.06         4.01        49.05         6.94         3.16 
TCGA-68-A59I TCGA-68-A59J TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-7138 
        3.98         3.42        29.56        73.12        75.09        11.18 
TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 
       89.98        20.78         0.49        42.28        70.13       106.95 
TCGA-77-7465 TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 TCGA-77-8128 TCGA-77-8130 
       15.75         6.51        86.76        53.95        37.81        82.92 
TCGA-77-8131 TCGA-77-8133 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8145 
       12.59        53.92        17.72       104.09        11.54         6.97 
TCGA-77-8148 TCGA-77-8150 TCGA-77-8153 TCGA-77-8154 TCGA-77-A5FZ TCGA-77-A5G3 
        9.63        54.41        55.36        35.90       126.18       117.57 
TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6175 TCGA-85-6798 TCGA-85-7696 TCGA-85-7698 
       30.81        23.44         9.67         1.12         0.59         1.61 
TCGA-85-7699 TCGA-85-7844 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8277 
        0.03         1.25         0.85         1.97         0.53         0.36 
TCGA-85-8288 TCGA-85-8350 TCGA-85-8352 TCGA-85-8353 TCGA-85-8354 TCGA-85-8355 
        1.78         1.97         2.20         1.78         2.01         2.01 
TCGA-85-8479 TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 TCGA-85-8666 
        0.72         0.69        14.63        13.94         0.10        15.62 
TCGA-85-A4QR TCGA-85-A50M TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 TCGA-90-7766 
        0.82         0.62         0.79         0.43        24.92         9.50 
TCGA-90-7767 TCGA-90-7769 TCGA-90-7964 TCGA-90-A4EE TCGA-92-7340 TCGA-92-7341 
        2.93        11.77        14.07        10.88         2.70         3.48 
TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-96-7544 TCGA-96-7545 
        5.26         2.30         2.86         0.16        39.88        44.19 
TCGA-96-8169 TCGA-96-8170 TCGA-96-A4JK TCGA-96-A4JL TCGA-98-7454 TCGA-98-8020 
        6.21         6.94         8.98         6.02         8.42         2.76 
TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-LA-A446 
       13.58         7.36        10.13         7.30         1.15         1.18 
TCGA-NC-A5HE 
       56.61 

  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
              0.03               0.03 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
             92.71             173.82 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
            11.475             14.100 
[1] "0.0 - 92.7 (11.5)"  "0.0 - 173.8 (14.1)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56U 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-43-A56V         TCGA-46-3768         TCGA-46-6025 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-46-6026         TCGA-51-4079         TCGA-51-4080 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-51-4081         TCGA-52-7622         TCGA-52-7809 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-52-7810         TCGA-52-7811         TCGA-52-7812 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-5898 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-56-A49D         TCGA-56-A4BW         TCGA-56-A4BX 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-56-A4BY         TCGA-56-A4ZJ         TCGA-56-A4ZK 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-56-A5DR         TCGA-56-A5DS         TCGA-58-8386 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-68-A59I 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-68-A59J         TCGA-77-6842         TCGA-77-6843 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
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  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56U 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-43-A56V         TCGA-46-3768         TCGA-46-6025 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-46-6026         TCGA-51-4079         TCGA-51-4080 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-51-4081         TCGA-52-7622         TCGA-52-7809 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-52-7810         TCGA-52-7811         TCGA-52-7812 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-5898 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-56-A49D         TCGA-56-A4BW         TCGA-56-A4BX 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-56-A4BY         TCGA-56-A4ZJ         TCGA-56-A4ZK 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-56-A5DR         TCGA-56-A5DS         TCGA-58-8386 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-68-A59I 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-68-A59J         TCGA-77-6842         TCGA-77-6843 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8153         TCGA-77-8154 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5FZ         TCGA-77-A5G3 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-77-A5GB         TCGA-77-A5GH         TCGA-85-6175 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
[1] "hr=" "1.1"
D75V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  19Q LOSS MUTATED         1       13       27        0        17        14
  19Q LOSS WILD-TYPE       0       56      109        1        33        56
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  19Q LOSS MUTATED            9          4        1
  19Q LOSS WILD-TYPE         45         16        4
D75V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  19Q LOSS MUTATED    22  52  10   5
  19Q LOSS WILD-TYPE  73 198  35  14
D75V4, multiclass
    clus
vv   19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  T1               22                 73
  T2               52                198
  T3               10                 35
  T4                5                 14
                    vv
clus                  N0  N1  N2  N3
  19Q LOSS MUTATED    58  20   8   0
  19Q LOSS WILD-TYPE 197  89  26   5
D75V5, multiclass
    clus
vv   19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  N0               58                197
  N1               20                 89
  N2                8                 26
  N3                0                  5
                    vv
clus                  M0  M1  MX
  19Q LOSS MUTATED    75   1  11
  19Q LOSS WILD-TYPE 274   4  38
D75V6, multiclass
    clus
vv   19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  M0               75                274
  M1                1                  4
  MX               11                 38
D75V7, binary
                    cls
clus                   0   1
  19Q LOSS MUTATED    15  74
  19Q LOSS WILD-TYPE  89 231
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q LOSS MUTATED     15   74
  19Q LOSS WILD-TYPE   89  231
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  FEMALE               15                 89
  MALE                 74                231
D75V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  19Q LOSS MUTATED                                       3
  19Q LOSS WILD-TYPE                                     9
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  19Q LOSS MUTATED                                        2
  19Q LOSS WILD-TYPE                                      4
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  19Q LOSS MUTATED                                         1
  19Q LOSS WILD-TYPE                                       0
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  19Q LOSS MUTATED                                                            83
  19Q LOSS WILD-TYPE                                                         307
D75V9, multiclass
                                                             clus
vv                                                            19Q LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      3
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     2
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               83
                                                             clus
vv                                                            19Q LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                        9
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       4
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                307
D75V10, binary
                    cls
clus                   0   1
  19Q LOSS MUTATED     5  84
  19Q LOSS WILD-TYPE   8 312
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q LOSS MUTATED      5   84
  19Q LOSS WILD-TYPE    8  312
     clus
vv    19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  NO                 5                  8
  YES               84                312
D75V11, continuous
D75V12, continuous
                    vv
clus                  R0  R1  R2  RX
  19Q LOSS MUTATED    67   2   1   6
  19Q LOSS WILD-TYPE 265   6   3  12
D75V13, multiclass
    clus
vv   19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  R0               67                265
  R1                2                  6
  R2                1                  3
  RX                6                 12

Clustering(76) Variable = 20P LOSS MUTATION ANALYSIS
D76V1, survival
                    sevent
clus2                  0   1
  20P LOSS MUTATED    25  11
  20P LOSS WILD-TYPE 219 128
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                36                347 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                11                128 
$`20P LOSS MUTATED`
TCGA-18-3416 TCGA-18-4721 TCGA-21-1078 TCGA-21-5787 TCGA-22-4593 TCGA-22-5478 
       28.34        90.54        15.58        10.82        35.08         0.79 
TCGA-33-4583 TCGA-33-4586 TCGA-37-3792 TCGA-37-4135 TCGA-39-5034 TCGA-43-3394 
      141.34        14.07         0.39         6.81        36.39        27.02 
TCGA-43-6771 TCGA-52-7810 TCGA-60-2706 TCGA-60-2712 TCGA-60-2714 TCGA-66-2755 
        5.46        30.35        92.71         9.01        50.33         0.92 
TCGA-66-2766 TCGA-66-2768 TCGA-66-2790 TCGA-66-2791 TCGA-68-A59J TCGA-77-7337 
        1.02         2.01        22.98         5.03         3.42       106.95 
TCGA-77-7463 TCGA-77-7465 TCGA-77-8144 TCGA-85-6560 TCGA-85-7950 TCGA-85-8071 
       46.78        15.75        27.39         0.36         1.97        14.07 
TCGA-85-8352 TCGA-85-A4QR TCGA-92-8065 TCGA-96-7544 TCGA-96-8169 TCGA-NC-A5HG 
        2.20         0.82         2.30        39.88         6.21        50.89 

$`20P LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.01        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       11.34        13.02        59.51        24.92         1.64        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        6.15         2.79         3.02        27.19       119.54        46.88 
TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1079 TCGA-21-1080 
       99.16        70.16        60.89        34.78        31.73       122.43 
TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 
        9.34       119.80         8.78        31.63        88.11        41.69 
TCGA-21-5786 TCGA-21-A5DI TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 
       33.93        32.19        19.99         7.33        14.93         4.31 
TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 
       64.21         1.74        14.10        27.02        48.82        20.48 
TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 
       48.33        24.13         0.56        38.17        34.75        13.12 
TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       32.02        19.30         9.57        11.77        31.73        64.93 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 
       63.55        14.63        44.25        54.28        71.34        79.20 
TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 
       11.74        18.84        30.12        62.86        56.32        16.64 
TCGA-22-A5C4 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 
        0.95         7.63       114.05        97.94        43.10       173.82 
TCGA-33-4582 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 
      103.53        54.44        10.82        19.76        27.02         2.63 
TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 
       61.61        31.50        28.96        32.88        31.27        50.24 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 
       67.79        56.38         9.07        23.24        12.00        14.07 
TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 
       30.94        18.15         4.96         1.12         3.95         0.43 
TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4141 TCGA-37-5819 
        6.58         8.12         7.46         7.82         0.39         3.39 
TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
       47.80        74.07        44.75        68.58        55.20        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 
       60.79         1.71        24.33         1.94        27.39        15.58 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-39-5040 TCGA-43-2576 TCGA-43-2578 
       35.64        35.70        17.88        17.06        40.21        22.49 
TCGA-43-2581 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 
       38.66        33.11        11.47        18.05        12.36        24.89 
TCGA-43-6770 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 
       10.19         3.81         6.97         7.76        66.51        13.38 
TCGA-43-8116 TCGA-43-8118 TCGA-43-A474 TCGA-43-A475 TCGA-43-A56U TCGA-43-A56V 
       11.77         2.93        11.61         9.73        14.20        12.03 
TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 
        9.99        10.65        13.91         0.39         0.39        29.95 
TCGA-52-7622 TCGA-52-7809 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 
       17.79         5.46         8.75        27.45        28.96         0.10 
TCGA-56-5898 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 
       18.25         2.04         0.62         0.99         0.43         0.99 
TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 TCGA-56-8503 
        1.45         1.32         0.85         0.20         0.03         1.35 
TCGA-56-8504 TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 
        5.85         1.81         1.18         2.07         0.56         0.53 
TCGA-56-8629 TCGA-56-A49D TCGA-56-A4BW TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A4ZJ 
        1.12         1.25         0.07         1.51         0.99         0.82 
TCGA-56-A4ZK TCGA-56-A5DR TCGA-56-A5DS TCGA-58-8386 TCGA-58-8387 TCGA-58-8388 
        0.13         0.13         0.26         0.03        13.25        12.43 
TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 TCGA-58-8393 TCGA-58-A46J TCGA-58-A46K 
       29.95        71.24        16.47        34.78        64.87        34.36 
TCGA-58-A46L TCGA-58-A46M TCGA-58-A46N TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 
       36.59        23.24        17.75        21.11         3.58        12.23 
TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
       10.22        96.82        37.94        21.73        80.45        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2713 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 
       66.54        41.42        56.91        35.34        48.49        42.64 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
        3.19        32.32        29.85        35.90        23.57        26.83 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 
       11.77        16.96        43.10         2.01        21.07         0.99 
TCGA-66-2753 TCGA-66-2754 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 
        1.02         2.01         0.99         0.99        21.01        25.05 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2767 TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 
        0.99         2.01         2.01         7.07        23.01        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
        3.02         2.01        19.00        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       24.95         1.97        25.97        40.01        22.98         4.04 
TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 
       30.02        10.06        54.08         4.01        49.05         2.73 
TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 TCGA-68-A59I TCGA-77-6842 
        6.64         6.94         8.02         3.16         3.98        29.56 
TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 
       73.12        75.09        23.28        11.18        89.98        20.78 
TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7338 TCGA-77-8007 TCGA-77-8008 
        0.49        42.28        70.13         0.16         6.51        86.76 
TCGA-77-8009 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 
       53.95        37.81        82.92        12.59        53.92        39.09 
TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 TCGA-77-8145 TCGA-77-8148 
       17.72       104.09        11.54        26.40         6.97         9.63 
TCGA-77-8150 TCGA-77-8153 TCGA-77-8154 TCGA-77-8156 TCGA-77-A5FZ TCGA-77-A5G3 
       54.41        55.36        35.90         0.33       126.18       117.57 
TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6175 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 
       30.81        23.44         9.67        12.99         1.12         0.59 
TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 TCGA-85-8048 
        0.33         1.61         0.03         1.15         1.25         0.85 
TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 
        1.97         0.53        16.77        16.87         0.43         0.36 
TCGA-85-8287 TCGA-85-8288 TCGA-85-8350 TCGA-85-8351 TCGA-85-8353 TCGA-85-8354 
        1.45         1.78         1.97         1.81         1.78         2.01 
TCGA-85-8355 TCGA-85-8479 TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 
        2.01         0.72         0.69        14.63        13.94         0.10 
TCGA-85-8666 TCGA-85-A4CL TCGA-85-A50M TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 
       15.62         0.49         0.62         0.79         0.43        24.92 
TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 TCGA-90-7964 TCGA-90-A4ED TCGA-90-A4EE 
        9.50         2.93        11.77        14.07         8.02        10.88 
TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-94-7033 TCGA-94-7557 
        2.70         3.48         4.01         5.26         2.86         0.16 
TCGA-94-7943 TCGA-96-7545 TCGA-96-8170 TCGA-96-A4JK TCGA-96-A4JL TCGA-98-7454 
       11.70        44.19         6.94         8.98         6.02         8.42 
TCGA-98-8020 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 TCGA-J1-A4AH TCGA-L3-A4E7 
        2.76        13.58         7.36        10.13         7.30         1.15 
TCGA-L3-A524 TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HI 
       14.76         1.18         2.73        56.61        37.32 

  20P LOSS MUTATED 20P LOSS WILD-TYPE 
              0.36               0.03 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
            141.34             173.82 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
             14.07              13.25 
[1] "0.4 - 141.3 (14.1)" "0.0 - 173.8 (13.2)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED"   "20P LOSS MUTATED" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
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"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-68-A59I 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-68-A59J         TCGA-77-6842         TCGA-77-6843 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED"   "20P LOSS MUTATED" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8153         TCGA-77-8154 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5FZ         TCGA-77-A5G3 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-77-A5GB         TCGA-77-A5GH         TCGA-85-6175 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D76V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  20P LOSS MUTATED         0        5       11        0         4        10
  20P LOSS WILD-TYPE       1       64      125        1        46        60
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  20P LOSS MUTATED            5          2        0
  20P LOSS WILD-TYPE         49         18        5
D76V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  20P LOSS MUTATED     6  27   4   0
  20P LOSS WILD-TYPE  89 223  41  19
D76V4, multiclass
    clus
vv   20P LOSS MUTATED 20P LOSS WILD-TYPE
  T1                6                 89
  T2               27                223
  T3                4                 41
  T4                0                 19
                    vv
clus                  N0  N1  N2  N3
  20P LOSS MUTATED    21  11   4   1
  20P LOSS WILD-TYPE 234  98  30   4
D76V5, multiclass
    clus
vv   20P LOSS MUTATED 20P LOSS WILD-TYPE
  N0               21                234
  N1               11                 98
  N2                4                 30
  N3                1                  4
                    vv
clus                  M0  M1  MX
  20P LOSS MUTATED    33   0   4
  20P LOSS WILD-TYPE 316   5  45
D76V6, multiclass
    clus
vv   20P LOSS MUTATED 20P LOSS WILD-TYPE
  M0               33                316
  M1                0                  5
  MX                4                 45
D76V7, binary
                    cls
clus                   0   1
  20P LOSS MUTATED     7  30
  20P LOSS WILD-TYPE  97 275
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P LOSS MUTATED      7   30
  20P LOSS WILD-TYPE   97  275
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  FEMALE                7                 97
  MALE                 30                275
D76V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  20P LOSS MUTATED                                       1
  20P LOSS WILD-TYPE                                    11
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  20P LOSS MUTATED                                        0
  20P LOSS WILD-TYPE                                      6
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  20P LOSS MUTATED                                         0
  20P LOSS WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  20P LOSS MUTATED                                                            36
  20P LOSS WILD-TYPE                                                         354
D76V9, multiclass
                                                             clus
vv                                                            20P LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      1
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     0
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               36
                                                             clus
vv                                                            20P LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       11
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       6
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                354
D76V10, binary
                    cls
clus                   0   1
  20P LOSS MUTATED     1  36
  20P LOSS WILD-TYPE  12 360
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P LOSS MUTATED      1   36
  20P LOSS WILD-TYPE   12  360
     clus
vv    20P LOSS MUTATED 20P LOSS WILD-TYPE
  NO                 1                 12
  YES               36                360
D76V11, continuous
D76V12, continuous
                    vv
clus                  R0  R1  R2  RX
  20P LOSS MUTATED    28   1   0   3
  20P LOSS WILD-TYPE 304   7   4  15
D76V13, multiclass
    clus
vv   20P LOSS MUTATED 20P LOSS WILD-TYPE
  R0               28                304
  R1                1                  7
  R2                0                  4
  RX                3                 15

Clustering(77) Variable = 20Q LOSS MUTATION ANALYSIS
D77V1, survival
                    sevent
clus2                  0   1
  20Q LOSS MUTATED    25  14
  20Q LOSS WILD-TYPE 219 125
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                39                344 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                14                125 
$`20Q LOSS MUTATED`
TCGA-18-3411 TCGA-18-3415 TCGA-18-3416 TCGA-18-4721 TCGA-21-1078 TCGA-22-4604 
       46.52        59.51        28.34        90.54        15.58        13.12 
TCGA-22-5478 TCGA-33-4583 TCGA-33-4586 TCGA-34-2600 TCGA-34-7107 TCGA-39-5021 
        0.79       141.34        14.07        61.61         1.12        68.58 
TCGA-39-5034 TCGA-43-3394 TCGA-43-6771 TCGA-46-6025 TCGA-52-7622 TCGA-56-7580 
       36.39        27.02         5.46        10.65        17.79         1.32 
TCGA-56-A49D TCGA-58-8392 TCGA-60-2698 TCGA-60-2704 TCGA-60-2712 TCGA-60-2723 
        1.25        16.47        10.22        37.94         9.01        35.90 
TCGA-66-2755 TCGA-66-2766 TCGA-66-2791 TCGA-68-A59J TCGA-77-7142 TCGA-77-8144 
        0.92         1.02         5.03         3.42        42.28        27.39 
TCGA-77-8153 TCGA-77-8156 TCGA-85-7698 TCGA-85-7950 TCGA-85-8071 TCGA-85-8352 
       55.36         0.33         1.61         1.97        14.07         2.20 
TCGA-92-8065 TCGA-96-A4JK TCGA-L3-A524 
        2.30         8.98        14.76 

$`20Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3412 
       12.16         4.47        81.01        79.46         4.80        11.34 
TCGA-18-3414 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 
       13.02        24.92         1.64        43.76         6.15         2.79 
TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 
        3.02        27.19       119.54        46.88        99.16        70.16 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 
       60.89        34.78        31.73       122.43         9.34       119.80 
TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 
        8.78        31.63        88.11        41.69        33.93        10.82 
TCGA-21-A5DI TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 
       32.19        19.99         7.33        14.93         4.31        64.21 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 
        1.74        14.10        27.02        48.82        20.48        35.08 
TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4605 
       48.33        24.13         0.56        38.17        34.75        32.02 
TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       19.30         9.57        11.77        31.73        64.93        63.55 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 
       14.63        44.25        54.28        71.34        79.20        11.74 
TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-22-A5C4 
       18.84        30.12        62.86        56.32        16.64         0.95 
TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 
        7.63       114.05        97.94        43.10       173.82       103.53 
TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 TCGA-34-2604 
       54.44        10.82        19.76        27.02         2.63        31.50 
TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
       28.96        32.88        31.27        50.24        67.79        56.38 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.07        23.24        12.00        14.07        30.94        18.15 
TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 
        4.96         3.95         0.43         0.39         6.58         8.12 
TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 
        7.46         7.82         6.81         0.39         3.39        47.80 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       74.07        44.75        55.20        70.03        60.79         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.39        15.58        35.64        35.70 
TCGA-39-5039 TCGA-39-5040 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-3920 
       17.88        17.06        40.21        22.49        38.66        33.11 
TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6773 
       11.47        18.05        12.36        24.89        10.19         3.81 
TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 
        6.97         7.76        66.51        13.38        11.77         2.93 
TCGA-43-A474 TCGA-43-A475 TCGA-43-A56U TCGA-43-A56V TCGA-46-3768 TCGA-46-6026 
       11.61         9.73        14.20        12.03         9.99        13.91 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7809 TCGA-52-7810 TCGA-52-7811 
        0.39         0.39        29.95         5.46        30.35         8.75 
TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-5898 TCGA-56-6545 TCGA-56-6546 
       27.45        28.96         0.10        18.25         2.04         0.62 
TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7582 TCGA-56-7730 
        0.99         0.43         0.99         1.45         0.85         0.20 
TCGA-56-7822 TCGA-56-8503 TCGA-56-8504 TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 
        0.03         1.35         5.85         1.81         1.18         2.07 
TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 TCGA-56-A4BW TCGA-56-A4BX TCGA-56-A4BY 
        0.56         0.53         1.12         0.07         1.51         0.99 
TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DR TCGA-56-A5DS TCGA-58-8386 TCGA-58-8387 
        0.82         0.13         0.13         0.26         0.03        13.25 
TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 TCGA-58-8393 TCGA-58-A46J TCGA-58-A46K 
       12.43        29.95        71.24        34.78        64.87        34.36 
TCGA-58-A46L TCGA-58-A46M TCGA-58-A46N TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 
       36.59        23.24        17.75        21.11         3.58        12.23 
TCGA-60-2703 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
       96.82        92.71        21.73        80.45        49.48        66.54 
TCGA-60-2711 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 
       41.42        56.91        50.33        35.34        48.49        42.64 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 
        3.19        32.32        29.85        23.57        26.83        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 
       16.96        43.10         2.01        21.07         0.99         1.02 
TCGA-66-2754 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        2.01         0.99         0.99        21.01        25.05         0.99 
TCGA-66-2765 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 
        2.01         2.01         2.01         7.07        23.01        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
        3.02         2.01        19.00        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       24.95         1.97        25.97        40.01        22.98         4.04 
TCGA-66-2790 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
       22.98        30.02        10.06        54.08         4.01        49.05 
TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 TCGA-68-A59I 
        2.73         6.64         6.94         8.02         3.16         3.98 
TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 
       29.56        73.12        75.09        23.28        11.18        89.98 
TCGA-77-7140 TCGA-77-7141 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 
       20.78         0.49        70.13       106.95         0.16        46.78 
TCGA-77-7465 TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 TCGA-77-8128 TCGA-77-8130 
       15.75         6.51        86.76        53.95        37.81        82.92 
TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 
       12.59        53.92        39.09        17.72       104.09        11.54 
TCGA-77-8143 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-77-8154 TCGA-77-A5FZ 
       26.40         6.97         9.63        54.41        35.90       126.18 
TCGA-77-A5G3 TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6175 TCGA-85-6560 TCGA-85-6561 
      117.57        30.81        23.44         9.67         0.36        12.99 
TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 
        1.12         0.59         0.33         0.03         1.15         1.25 
TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8072 TCGA-85-8276 
        0.85         1.97         0.53        16.77        16.87         0.43 
TCGA-85-8277 TCGA-85-8287 TCGA-85-8288 TCGA-85-8350 TCGA-85-8351 TCGA-85-8353 
        0.36         1.45         1.78         1.97         1.81         1.78 
TCGA-85-8354 TCGA-85-8355 TCGA-85-8479 TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 
        2.01         2.01         0.72         0.69        14.63        13.94 
TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A50M TCGA-85-A513 
        0.10        15.62         0.49         0.82         0.62         0.79 
TCGA-85-A53L TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 TCGA-90-7964 
        0.43        24.92         9.50         2.93        11.77        14.07 
TCGA-90-A4ED TCGA-90-A4EE TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 
        8.02        10.88         2.70         3.48         4.01         5.26 
TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 
        2.86         0.16        11.70        39.88        44.19         6.21 
TCGA-96-8170 TCGA-96-A4JL TCGA-98-7454 TCGA-98-8020 TCGA-98-8021 TCGA-98-8022 
        6.94         6.02         8.42         2.76        13.58         7.36 
TCGA-98-8023 TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE 
       10.13         7.30         1.15         1.18         2.73        56.61 
TCGA-NC-A5HG TCGA-NC-A5HI 
       50.89        37.32 

  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
              0.33               0.03 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
            141.34             173.82 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
            14.070             13.315 
[1] "0.3 - 141.3 (14.1)" "0.0 - 173.8 (13.3)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED"   "20Q LOSS MUTATED" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56U 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-43-A56V         TCGA-46-3768         TCGA-46-6025 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-46-6026         TCGA-51-4079         TCGA-51-4080 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-51-4081         TCGA-52-7622         TCGA-52-7809 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-52-7810         TCGA-52-7811         TCGA-52-7812 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-5898 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-56-A49D         TCGA-56-A4BW         TCGA-56-A4BX 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-56-A4BY         TCGA-56-A4ZJ         TCGA-56-A4ZK 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-56-A5DR         TCGA-56-A5DS         TCGA-58-8386 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-68-A59I 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-68-A59J         TCGA-77-6842         TCGA-77-6843 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8153         TCGA-77-8154 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5FZ         TCGA-77-A5G3 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-77-A5GB         TCGA-77-A5GH         TCGA-85-6175 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
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"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED"   "20Q LOSS MUTATED" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56U 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-43-A56V         TCGA-46-3768         TCGA-46-6025 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-46-6026         TCGA-51-4079         TCGA-51-4080 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-51-4081         TCGA-52-7622         TCGA-52-7809 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-52-7810         TCGA-52-7811         TCGA-52-7812 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-5898 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-56-A49D         TCGA-56-A4BW         TCGA-56-A4BX 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-56-A4BY         TCGA-56-A4ZJ         TCGA-56-A4ZK 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-56-A5DR         TCGA-56-A5DS         TCGA-58-8386 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-68-A59I 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-68-A59J         TCGA-77-6842         TCGA-77-6843 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8153         TCGA-77-8154 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5FZ         TCGA-77-A5G3 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-77-A5GB         TCGA-77-A5GH         TCGA-85-6175 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
[1] "hr=" "1"  
D77V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  20Q LOSS MUTATED         0        5       18        1         2         9
  20Q LOSS WILD-TYPE       1       64      118        0        48        61
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  20Q LOSS MUTATED            5          1        0
  20Q LOSS WILD-TYPE         49         19        5
D77V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  20Q LOSS MUTATED     6  31   4   0
  20Q LOSS WILD-TYPE  89 219  41  19
D77V4, multiclass
    clus
vv   20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  T1                6                 89
  T2               31                219
  T3                4                 41
  T4                0                 19
                    vv
clus                  N0  N1  N2  N3
  20Q LOSS MUTATED    26  10   4   1
  20Q LOSS WILD-TYPE 229  99  30   4
D77V5, multiclass
    clus
vv   20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  N0               26                229
  N1               10                 99
  N2                4                 30
  N3                1                  4
                    vv
clus                  M0  M1  MX
  20Q LOSS MUTATED    37   0   4
  20Q LOSS WILD-TYPE 312   5  45
D77V6, multiclass
    clus
vv   20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  M0               37                312
  M1                0                  5
  MX                4                 45
D77V7, binary
                    cls
clus                   0   1
  20Q LOSS MUTATED    12  29
  20Q LOSS WILD-TYPE  92 276
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q LOSS MUTATED     12   29
  20Q LOSS WILD-TYPE   92  276
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  FEMALE               12                 92
  MALE                 29                276
D77V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  20Q LOSS MUTATED                                       0
  20Q LOSS WILD-TYPE                                    12
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  20Q LOSS MUTATED                                        0
  20Q LOSS WILD-TYPE                                      6
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  20Q LOSS MUTATED                                         0
  20Q LOSS WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  20Q LOSS MUTATED                                                            41
  20Q LOSS WILD-TYPE                                                         349
D77V9, multiclass
                                                             clus
vv                                                            20Q LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      0
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     0
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               41
                                                             clus
vv                                                            20Q LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       12
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       6
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                349
D77V10, binary
                    cls
clus                   0   1
  20Q LOSS MUTATED     0  41
  20Q LOSS WILD-TYPE  13 355
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q LOSS MUTATED      0   41
  20Q LOSS WILD-TYPE   13  355
     clus
vv    20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  NO                 0                 13
  YES               41                355
D77V11, continuous
D77V12, continuous
                    vv
clus                  R0  R1  R2  RX
  20Q LOSS MUTATED    34   1   0   4
  20Q LOSS WILD-TYPE 298   7   4  14
D77V13, multiclass
    clus
vv   20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  R0               34                298
  R1                1                  7
  R2                0                  4
  RX                4                 14

Clustering(78) Variable = 21Q LOSS MUTATION ANALYSIS
D78V1, survival
                    sevent
clus2                  0   1
  21Q LOSS MUTATED   133  70
  21Q LOSS WILD-TYPE 111  69
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
               203                180 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                70                 69 
$`21Q LOSS MUTATED`
TCGA-18-3408 TCGA-18-3411 TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 
       81.01        46.52        11.34        13.02        59.51        28.34 
TCGA-18-3417 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-21-1070 TCGA-21-1072 
       24.92         6.15         2.79        90.54       119.54        99.16 
TCGA-21-1075 TCGA-21-1076 TCGA-21-1079 TCGA-21-1083 TCGA-21-5786 TCGA-21-5787 
       70.16        60.89        31.73         8.78        33.93        10.82 
TCGA-22-0944 TCGA-22-1002 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 
        7.33         4.31        14.10        27.02        48.82        20.48 
TCGA-22-4593 TCGA-22-4594 TCGA-22-4599 TCGA-22-4604 TCGA-22-4613 TCGA-22-5471 
       35.08        48.33        38.17        13.12        11.77        31.73 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 
       63.55        14.63        44.25         0.79        54.28        71.34 
TCGA-22-5482 TCGA-22-5483 TCGA-22-5491 TCGA-33-4532 TCGA-33-4538 TCGA-33-4547 
       11.74        18.84        56.32         7.63        97.94        43.10 
TCGA-33-4582 TCGA-33-4586 TCGA-33-4589 TCGA-34-2604 TCGA-34-2608 TCGA-34-5231 
      103.53        14.07        10.82        31.50        32.88        50.24 
TCGA-34-5236 TCGA-34-5241 TCGA-34-5927 TCGA-34-7107 TCGA-37-3789 TCGA-37-3792 
        9.07        14.07        30.94         1.12         0.43         0.39 
TCGA-37-4130 TCGA-37-4133 TCGA-37-4135 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 
        8.12         7.82         6.81         3.39        74.07        44.75 
TCGA-39-5027 TCGA-39-5029 TCGA-39-5031 TCGA-39-5034 TCGA-39-5036 TCGA-39-5037 
       60.79        24.33        27.39        36.39        35.64        35.70 
TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 TCGA-43-3920 TCGA-43-5668 TCGA-43-6771 
       17.88        40.21        22.49        33.11        11.47         5.46 
TCGA-43-7656 TCGA-43-8116 TCGA-43-8118 TCGA-43-A56V TCGA-46-3768 TCGA-46-6025 
        6.97        11.77         2.93        12.03         9.99        10.65 
TCGA-46-6026 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 
       13.91         0.39        29.95        17.79         5.46        30.35 
TCGA-56-1622 TCGA-56-5897 TCGA-56-5898 TCGA-56-6545 TCGA-56-6546 TCGA-56-7222 
       28.96         0.10        18.25         2.04         0.62         0.43 
TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 
        0.99         1.45         1.32         0.85         0.20         0.03 
TCGA-56-8503 TCGA-56-8629 TCGA-56-A49D TCGA-56-A4BW TCGA-56-A4BX TCGA-56-A4ZJ 
        1.35         1.12         1.25         0.07         1.51         0.82 
TCGA-58-8386 TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 TCGA-58-8392 TCGA-58-A46K 
        0.03        13.25        12.43        29.95        16.47        34.36 
TCGA-60-2698 TCGA-60-2703 TCGA-60-2707 TCGA-60-2708 TCGA-60-2711 TCGA-60-2712 
       10.22        96.82        21.73        80.45        41.42         9.01 
TCGA-60-2715 TCGA-60-2719 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2725 
       35.34        42.64        32.32        29.85        35.90        26.83 
TCGA-60-2726 TCGA-66-2734 TCGA-66-2742 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 
       11.77        43.10        21.07         1.02         2.01         0.92 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2765 TCGA-66-2766 TCGA-66-2771 
        0.99        21.01        25.05         2.01         1.02        19.00 
TCGA-66-2777 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2785 TCGA-66-2786 
        2.01        12.03         3.98        12.00         1.97        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2795 
       40.01        22.98         5.03        30.02        10.06         4.01 
TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-8250 TCGA-68-8251 TCGA-77-6842 
       49.05         2.73         6.64         8.02         3.16        29.56 
TCGA-77-7141 TCGA-77-7335 TCGA-77-7463 TCGA-77-7465 TCGA-77-8008 TCGA-77-8009 
        0.49        70.13        46.78        15.75        86.76        53.95 
TCGA-77-8136 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-77-8153 TCGA-77-8154 
       39.09         6.97         9.63        54.41        55.36        35.90 
TCGA-77-8156 TCGA-77-A5G3 TCGA-77-A5GH TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 
        0.33       117.57        23.44        12.99         1.12         0.59 
TCGA-85-7698 TCGA-85-7843 TCGA-85-8048 TCGA-85-8049 TCGA-85-8070 TCGA-85-8071 
        1.61         1.15         0.85         1.97        16.77        14.07 
TCGA-85-8276 TCGA-85-8287 TCGA-85-8350 TCGA-85-8351 TCGA-85-8352 TCGA-85-8354 
        0.43         1.45         1.97         1.81         2.20         2.01 
TCGA-85-8355 TCGA-85-8481 TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL TCGA-85-A4QR 
        2.01         0.69         0.10        15.62         0.49         0.82 
TCGA-85-A53L TCGA-90-7766 TCGA-90-7769 TCGA-90-A4ED TCGA-90-A4EE TCGA-92-7341 
        0.43         9.50        11.77         8.02        10.88         3.48 
TCGA-92-8064 TCGA-94-7557 TCGA-94-7943 TCGA-96-A4JK TCGA-98-8021 TCGA-98-8022 
        5.26         0.16        11.70         8.98        13.58         7.36 
TCGA-98-8023 TCGA-L3-A4E7 TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE 
       10.13         1.15         1.18         2.73        56.61 

$`21Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3409 TCGA-18-3410 TCGA-18-3419 TCGA-18-3421 
       12.16         4.47        79.46         4.80         1.64        43.76 
TCGA-18-5592 TCGA-18-5595 TCGA-21-1071 TCGA-21-1077 TCGA-21-1078 TCGA-21-1080 
        3.02        27.19        46.88        34.78        15.58       122.43 
TCGA-21-1081 TCGA-21-1082 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-A5DI 
        9.34       119.80        31.63        88.11        41.69        32.19 
TCGA-22-0940 TCGA-22-1000 TCGA-22-1005 TCGA-22-1011 TCGA-22-4595 TCGA-22-4596 
       19.99        14.93        64.21         1.74        24.13         0.56 
TCGA-22-4601 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-5472 TCGA-22-5481 
       34.75        32.02        19.30         9.57        64.93        79.20 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5492 TCGA-22-A5C4 TCGA-33-4533 TCGA-33-4566 
       30.12        62.86        16.64         0.95       114.05       173.82 
TCGA-33-4583 TCGA-33-4587 TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 
      141.34        54.44        19.76        27.02         2.63        61.61 
TCGA-34-2605 TCGA-34-2609 TCGA-34-5232 TCGA-34-5234 TCGA-34-5239 TCGA-34-5240 
       28.96        31.27        67.79        56.38        23.24        12.00 
TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-4129 TCGA-37-4132 TCGA-37-4141 
       18.15         4.96         3.95         6.58         7.46         0.39 
TCGA-39-5011 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 TCGA-39-5030 
       47.80        68.58        55.20        70.03         1.71         1.94 
TCGA-39-5035 TCGA-39-5040 TCGA-43-2581 TCGA-43-3394 TCGA-43-5670 TCGA-43-6143 
       15.58        17.06        38.66        27.02        18.05        12.36 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6773 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 
       24.89        10.19         3.81         7.76        66.51        13.38 
TCGA-43-A474 TCGA-43-A475 TCGA-43-A56U TCGA-51-4079 TCGA-52-7811 TCGA-52-7812 
       11.61         9.73        14.20         0.39         8.75        27.45 
TCGA-56-7221 TCGA-56-8504 TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 
        0.99         5.85         1.81         1.18         2.07         0.56 
TCGA-56-8628 TCGA-56-A4BY TCGA-56-A4ZK TCGA-56-A5DR TCGA-56-A5DS TCGA-58-8391 
        0.53         0.99         0.13         0.13         0.26        71.24 
TCGA-58-8393 TCGA-58-A46J TCGA-58-A46L TCGA-58-A46M TCGA-58-A46N TCGA-60-2695 
       34.78        64.87        36.59        23.24        17.75        21.11 
TCGA-60-2696 TCGA-60-2697 TCGA-60-2704 TCGA-60-2706 TCGA-60-2709 TCGA-60-2710 
        3.58        12.23        37.94        92.71        49.48        66.54 
TCGA-60-2713 TCGA-60-2714 TCGA-60-2716 TCGA-60-2720 TCGA-60-2724 TCGA-66-2727 
       56.91        50.33        48.49         3.19        23.57        16.96 
TCGA-66-2737 TCGA-66-2744 TCGA-66-2756 TCGA-66-2763 TCGA-66-2767 TCGA-66-2768 
        2.01         0.99         0.99         0.99         2.01         2.01 
TCGA-66-2769 TCGA-66-2770 TCGA-66-2773 TCGA-66-2778 TCGA-66-2783 TCGA-66-2789 
        7.07        23.01         3.02        19.00        24.95         4.04 
TCGA-66-2790 TCGA-66-2794 TCGA-68-7757 TCGA-68-A59I TCGA-68-A59J TCGA-77-6843 
       22.98        54.08         6.94         3.98         3.42        73.12 
TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7142 
       75.09        23.28        11.18        89.98        20.78        42.28 
TCGA-77-7337 TCGA-77-7338 TCGA-77-8007 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 
      106.95         0.16         6.51        37.81        82.92        12.59 
TCGA-77-8133 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 
       53.92        17.72       104.09        11.54        26.40        27.39 
TCGA-77-A5FZ TCGA-77-A5GB TCGA-85-6175 TCGA-85-6560 TCGA-85-7697 TCGA-85-7699 
      126.18        30.81         9.67         0.36         0.33         0.03 
TCGA-85-7844 TCGA-85-7950 TCGA-85-8052 TCGA-85-8072 TCGA-85-8277 TCGA-85-8288 
        1.25         1.97         0.53        16.87         0.36         1.78 
TCGA-85-8353 TCGA-85-8479 TCGA-85-8580 TCGA-85-8582 TCGA-85-A50M TCGA-85-A513 
        1.78         0.72        14.63        13.94         0.62         0.79 
TCGA-90-6837 TCGA-90-7767 TCGA-90-7964 TCGA-92-7340 TCGA-92-8063 TCGA-92-8065 
       24.92         2.93        14.07         2.70         4.01         2.30 
TCGA-94-7033 TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 TCGA-96-A4JL 
        2.86        39.88        44.19         6.21         6.94         6.02 
TCGA-98-7454 TCGA-98-8020 TCGA-J1-A4AH TCGA-L3-A524 TCGA-NC-A5HG TCGA-NC-A5HI 
        8.42         2.76         7.30        14.76        50.89        37.32 

  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
              0.03               0.03 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
            119.54             173.82 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
             12.00              15.58 
[1] "0.0 - 119.5 (12.0)" "0.0 - 173.8 (15.6)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56U 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-43-A56V         TCGA-46-3768         TCGA-46-6025 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-46-6026         TCGA-51-4079         TCGA-51-4080 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-51-4081         TCGA-52-7622         TCGA-52-7809 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-52-7810         TCGA-52-7811         TCGA-52-7812 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-56-1622         TCGA-56-5897         TCGA-56-5898 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-56-A49D         TCGA-56-A4BW         TCGA-56-A4BX 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-56-A4BY         TCGA-56-A4ZJ         TCGA-56-A4ZK 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-56-A5DR         TCGA-56-A5DS         TCGA-58-8386 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
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        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D78V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  21Q LOSS MUTATED         0       40       74        1        28        33
  21Q LOSS WILD-TYPE       1       29       62        0        22        37
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  21Q LOSS MUTATED           26         10        4
  21Q LOSS WILD-TYPE         28         10        1
D78V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  21Q LOSS MUTATED    51 134  22  10
  21Q LOSS WILD-TYPE  44 116  23   9
D78V4, multiclass
    clus
vv   21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  T1               51                 44
  T2              134                116
  T3               22                 23
  T4               10                  9
                    vv
clus                  N0  N1  N2  N3
  21Q LOSS MUTATED   138  59  16   1
  21Q LOSS WILD-TYPE 117  50  18   4
D78V5, multiclass
    clus
vv   21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  N0              138                117
  N1               59                 50
  N2               16                 18
  N3                1                  4
                    vv
clus                  M0  M1  MX
  21Q LOSS MUTATED   191   4  19
  21Q LOSS WILD-TYPE 158   1  30
D78V6, multiclass
    clus
vv   21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  M0              191                158
  M1                4                  1
  MX               19                 30
D78V7, binary
                    cls
clus                   0   1
  21Q LOSS MUTATED    39 178
  21Q LOSS WILD-TYPE  65 127
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q LOSS MUTATED     39  178
  21Q LOSS WILD-TYPE   65  127
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  FEMALE               39                 65
  MALE                178                127
D78V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  21Q LOSS MUTATED                                       5
  21Q LOSS WILD-TYPE                                     7
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  21Q LOSS MUTATED                                        2
  21Q LOSS WILD-TYPE                                      4
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  21Q LOSS MUTATED                                         0
  21Q LOSS WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  21Q LOSS MUTATED                                                           210
  21Q LOSS WILD-TYPE                                                         180
D78V9, multiclass
                                                             clus
vv                                                            21Q LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      5
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     2
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              210
                                                             clus
vv                                                            21Q LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                        7
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       4
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                180
D78V10, binary
                    cls
clus                   0   1
  21Q LOSS MUTATED     7 210
  21Q LOSS WILD-TYPE   6 186
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q LOSS MUTATED      7  210
  21Q LOSS WILD-TYPE    6  186
     clus
vv    21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  NO                 7                  6
  YES              210                186
D78V11, continuous
D78V12, continuous
                    vv
clus                  R0  R1  R2  RX
  21Q LOSS MUTATED   180   3   2   7
  21Q LOSS WILD-TYPE 152   5   2  11
D78V13, multiclass
    clus
vv   21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  R0              180                152
  R1                3                  5
  R2                2                  2
  RX                7                 11

Clustering(79) Variable = 22Q LOSS MUTATION ANALYSIS
D79V1, survival
                    sevent
clus2                  0   1
  22Q LOSS MUTATED    43  27
  22Q LOSS WILD-TYPE 201 112
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                70                313 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                27                112 
$`22Q LOSS MUTATED`
TCGA-18-3407 TCGA-18-3417 TCGA-18-4083 TCGA-21-1070 TCGA-21-1071 TCGA-21-1080 
        4.47        24.92         6.15       119.54        46.88       122.43 
TCGA-21-5783 TCGA-21-5787 TCGA-21-A5DI TCGA-22-0940 TCGA-22-1016 TCGA-22-4594 
       88.11        10.82        32.19        19.99        27.02        48.33 
TCGA-22-5480 TCGA-22-5483 TCGA-33-4582 TCGA-33-4583 TCGA-33-4587 TCGA-33-6737 
       71.34        18.84       103.53       141.34        54.44        19.76 
TCGA-34-5928 TCGA-37-3792 TCGA-37-4129 TCGA-37-4132 TCGA-37-5819 TCGA-39-5011 
       18.15         0.39         6.58         7.46         3.39        47.80 
TCGA-39-5016 TCGA-39-5029 TCGA-39-5040 TCGA-43-2578 TCGA-43-2581 TCGA-43-6771 
       74.07        24.33        17.06        22.49        38.66         5.46 
TCGA-43-7658 TCGA-52-7812 TCGA-56-6546 TCGA-56-7222 TCGA-60-2695 TCGA-66-2727 
       66.51        27.45         0.62         0.43        21.11        16.96 
TCGA-66-2753 TCGA-66-2754 TCGA-66-2757 TCGA-66-2759 TCGA-66-2766 TCGA-66-2771 
        1.02         2.01         0.99        25.05         1.02        19.00 
TCGA-66-2778 TCGA-66-2782 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2793 
       19.00        12.00         4.04        22.98         5.03        10.06 
TCGA-68-8250 TCGA-68-A59I TCGA-77-7138 TCGA-77-7337 TCGA-77-7465 TCGA-77-8139 
        8.02         3.98        11.18       106.95        15.75       104.09 
TCGA-77-8150 TCGA-85-6560 TCGA-85-7697 TCGA-85-8048 TCGA-85-8049 TCGA-85-8072 
       54.41         0.36         0.33         0.85         1.97        16.87 
TCGA-85-8664 TCGA-85-8666 TCGA-85-A53L TCGA-90-A4ED TCGA-90-A4EE TCGA-92-8063 
        0.10        15.62         0.43         8.02        10.88         4.01 
TCGA-92-8065 TCGA-98-7454 TCGA-MF-A522 TCGA-NC-A5HE 
        2.30         8.42         2.73        56.61 

$`22Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16        81.01        79.46         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3419 TCGA-18-3421 TCGA-18-4086 
       13.02        59.51        28.34         1.64        43.76         2.79 
TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 
       90.54         3.02        27.19        99.16        70.16        60.89 
TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 
       34.78        15.58        31.73         9.34       119.80         8.78 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 
       31.63        41.69        33.93         7.33        14.93         4.31 
TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 
       64.21         1.74        14.10        48.82        20.48        35.08 
TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 
       24.13         0.56        38.17        34.75        13.12        32.02 
TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       19.30         9.57        11.77        31.73        64.93        63.55 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5481 TCGA-22-5482 
       14.63        44.25         0.79        54.28        79.20        11.74 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-22-A5C4 TCGA-33-4532 
       30.12        62.86        56.32        16.64         0.95         7.63 
TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4586 TCGA-33-4589 
      114.05        97.94        43.10       173.82        14.07        10.82 
TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 
       27.02         2.63        61.61        31.50        28.96        32.88 
TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       31.27        50.24        67.79        56.38         9.07        23.24 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 
       12.00        14.07        30.94         4.96         1.12         3.95 
TCGA-37-3789 TCGA-37-4130 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-39-5019 
        0.43         8.12         7.82         6.81         0.39        44.75 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5030 
       68.58        55.20        70.03        60.79         1.71         1.94 
TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
       27.39        36.39        15.58        35.64        35.70        17.88 
TCGA-43-2576 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 
       40.21        27.02        33.11        11.47        18.05        12.36 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-8115 
       24.89        10.19         3.81         6.97         7.76        13.38 
TCGA-43-8116 TCGA-43-8118 TCGA-43-A474 TCGA-43-A475 TCGA-43-A56U TCGA-43-A56V 
       11.77         2.93        11.61         9.73        14.20        12.03 
TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 
        9.99        10.65        13.91         0.39         0.39        29.95 
TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 TCGA-52-7811 TCGA-56-1622 TCGA-56-5897 
       17.79         5.46        30.35         8.75        28.96         0.10 
TCGA-56-5898 TCGA-56-6545 TCGA-56-7221 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 
       18.25         2.04         0.99         0.99         1.45         1.32 
TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 TCGA-56-8503 TCGA-56-8504 TCGA-56-8622 
        0.85         0.20         0.03         1.35         5.85         1.81 
TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 TCGA-56-A49D 
        1.18         2.07         0.56         0.53         1.12         1.25 
TCGA-56-A4BW TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DR 
        0.07         1.51         0.99         0.82         0.13         0.13 
TCGA-56-A5DS TCGA-58-8386 TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 
        0.26         0.03        13.25        12.43        29.95        71.24 
TCGA-58-8392 TCGA-58-8393 TCGA-58-A46J TCGA-58-A46K TCGA-58-A46L TCGA-58-A46M 
       16.47        34.78        64.87        34.36        36.59        23.24 
TCGA-58-A46N TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 
       17.75         3.58        12.23        10.22        96.82        37.94 
TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       92.71        21.73        80.45        49.48        66.54        41.42 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 
        9.01        56.91        50.33        35.34        48.49        42.64 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
        3.19        32.32        29.85        35.90        23.57        26.83 
TCGA-60-2726 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2755 
       11.77        43.10         2.01        21.07         0.99         0.92 
TCGA-66-2756 TCGA-66-2758 TCGA-66-2763 TCGA-66-2765 TCGA-66-2767 TCGA-66-2768 
        0.99        21.01         0.99         2.01         2.01         2.01 
TCGA-66-2769 TCGA-66-2770 TCGA-66-2773 TCGA-66-2777 TCGA-66-2780 TCGA-66-2781 
        7.07        23.01         3.02         2.01        12.03         3.98 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2792 
       24.95         1.97        25.97        40.01        22.98        30.02 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 
       54.08         4.01        49.05         2.73         6.64         6.94 
TCGA-68-8251 TCGA-68-A59J TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 
        3.16         3.42        29.56        73.12        75.09        23.28 
TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7338 
       89.98        20.78         0.49        42.28        70.13         0.16 
TCGA-77-7463 TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 TCGA-77-8128 TCGA-77-8130 
       46.78         6.51        86.76        53.95        37.81        82.92 
TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8140 TCGA-77-8143 
       12.59        53.92        39.09        17.72        11.54        26.40 
TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8153 TCGA-77-8154 TCGA-77-8156 
       27.39         6.97         9.63        55.36        35.90         0.33 
TCGA-77-A5FZ TCGA-77-A5G3 TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6175 TCGA-85-6561 
      126.18       117.57        30.81        23.44         9.67        12.99 
TCGA-85-6798 TCGA-85-7696 TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 
        1.12         0.59         1.61         0.03         1.15         1.25 
TCGA-85-7950 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8276 TCGA-85-8277 
        1.97         0.53        16.77        14.07         0.43         0.36 
TCGA-85-8287 TCGA-85-8288 TCGA-85-8350 TCGA-85-8351 TCGA-85-8352 TCGA-85-8353 
        1.45         1.78         1.97         1.81         2.20         1.78 
TCGA-85-8354 TCGA-85-8355 TCGA-85-8479 TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 
        2.01         2.01         0.72         0.69        14.63        13.94 
TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A50M TCGA-85-A513 TCGA-90-6837 TCGA-90-7766 
        0.49         0.82         0.62         0.79        24.92         9.50 
TCGA-90-7767 TCGA-90-7769 TCGA-90-7964 TCGA-92-7340 TCGA-92-7341 TCGA-92-8064 
        2.93        11.77        14.07         2.70         3.48         5.26 
TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 
        2.86         0.16        11.70        39.88        44.19         6.21 
TCGA-96-8170 TCGA-96-A4JK TCGA-96-A4JL TCGA-98-8020 TCGA-98-8021 TCGA-98-8022 
        6.94         8.98         6.02         2.76        13.58         7.36 
TCGA-98-8023 TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-L3-A524 TCGA-LA-A446 TCGA-NC-A5HG 
       10.13         7.30         1.15        14.76         1.18        50.89 
TCGA-NC-A5HI 
       37.32 

  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
              0.10               0.03 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
            141.34             173.82 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
             16.31              13.12 
[1] "0.1 - 141.3 (16.3)" "0.0 - 173.8 (13.1)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
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"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-68-A59I 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-68-A59J         TCGA-77-6842         TCGA-77-6843 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-77-8128         TCGA-77-8130         TCGA-77-8131 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-77-8133         TCGA-77-8136         TCGA-77-8138 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-77-8139         TCGA-77-8140         TCGA-77-8143 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-77-8144         TCGA-77-8145         TCGA-77-8148 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-77-8150         TCGA-77-8153         TCGA-77-8154 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5FZ         TCGA-77-A5G3 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-77-A5GB         TCGA-77-A5GH         TCGA-85-6175 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D79V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  22Q LOSS MUTATED         1       10       18        0        13        12
  22Q LOSS WILD-TYPE       0       59      118        1        37        58
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  22Q LOSS MUTATED           14          4        2
  22Q LOSS WILD-TYPE         40         16        3
D79V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  22Q LOSS MUTATED    17  46  10   2
  22Q LOSS WILD-TYPE  78 204  35  17
D79V4, multiclass
    clus
vv   22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  T1               17                 78
  T2               46                204
  T3               10                 35
  T4                2                 17
                    vv
clus                  N0  N1  N2  N3
  22Q LOSS MUTATED    41  20  11   3
  22Q LOSS WILD-TYPE 214  89  23   2
D79V5, multiclass
    clus
vv   22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  N0               41                214
  N1               20                 89
  N2               11                 23
  N3                3                  2
                    vv
clus                  M0  M1  MX
  22Q LOSS MUTATED    63   2   9
  22Q LOSS WILD-TYPE 286   3  40
D79V6, multiclass
    clus
vv   22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  M0               63                286
  M1                2                  3
  MX                9                 40
D79V7, binary
                    cls
clus                   0   1
  22Q LOSS MUTATED    18  57
  22Q LOSS WILD-TYPE  86 248
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q LOSS MUTATED     18   57
  22Q LOSS WILD-TYPE   86  248
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  FEMALE               18                 86
  MALE                 57                248
D79V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  22Q LOSS MUTATED                                       2
  22Q LOSS WILD-TYPE                                    10
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  22Q LOSS MUTATED                                        2
  22Q LOSS WILD-TYPE                                      4
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  22Q LOSS MUTATED                                         1
  22Q LOSS WILD-TYPE                                       0
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  22Q LOSS MUTATED                                                            70
  22Q LOSS WILD-TYPE                                                         320
D79V9, multiclass
                                                             clus
vv                                                            22Q LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      2
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     2
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               70
                                                             clus
vv                                                            22Q LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       10
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       4
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                320
D79V10, binary
                    cls
clus                   0   1
  22Q LOSS MUTATED     3  72
  22Q LOSS WILD-TYPE  10 324
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q LOSS MUTATED      3   72
  22Q LOSS WILD-TYPE   10  324
     clus
vv    22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  NO                 3                 10
  YES               72                324
D79V11, continuous
D79V12, continuous
                    vv
clus                  R0  R1  R2  RX
  22Q LOSS MUTATED    58   2   1   4
  22Q LOSS WILD-TYPE 274   6   3  14
D79V13, multiclass
    clus
vv   22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  R0               58                274
  R1                2                  6
  R2                1                  3
  RX                4                 14

Clustering(80) Variable = XQ LOSS MUTATION ANALYSIS
D80V1, survival
                   sevent
clus2                 0   1
  XQ LOSS MUTATED    49  34
  XQ LOSS WILD-TYPE 195 105
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
               83               300 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
               34               105 
$`XQ LOSS MUTATED`
TCGA-18-3408 TCGA-18-3416 TCGA-18-4086 TCGA-18-5592 TCGA-18-5595 TCGA-21-1072 
       81.01        28.34         2.79         3.02        27.19        99.16 
TCGA-21-1080 TCGA-21-1082 TCGA-21-1083 TCGA-22-0940 TCGA-22-4591 TCGA-22-4607 
      122.43       119.80         8.78        19.99        20.48        19.30 
TCGA-22-4613 TCGA-22-5473 TCGA-22-5477 TCGA-22-5481 TCGA-22-5485 TCGA-22-5491 
       11.77        63.55        44.25        79.20        30.12        56.32 
TCGA-22-A5C4 TCGA-33-4582 TCGA-33-4587 TCGA-34-2600 TCGA-34-2605 TCGA-34-5929 
        0.95       103.53        54.44        61.61        28.96         4.96 
TCGA-37-4135 TCGA-37-4141 TCGA-39-5027 TCGA-39-5028 TCGA-39-5037 TCGA-43-5668 
        6.81         0.39        60.79         1.71        35.70        11.47 
TCGA-43-7656 TCGA-43-8116 TCGA-46-6025 TCGA-51-4080 TCGA-52-7810 TCGA-56-7221 
        6.97        11.77        10.65         0.39        30.35         0.99 
TCGA-56-7222 TCGA-56-8625 TCGA-56-A5DR TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 
        0.43         2.07         0.13        12.43        29.95        71.24 
TCGA-58-8392 TCGA-60-2696 TCGA-60-2712 TCGA-60-2713 TCGA-60-2721 TCGA-60-2726 
       16.47         3.58         9.01        56.91        32.32        11.77 
TCGA-66-2727 TCGA-66-2757 TCGA-66-2763 TCGA-66-2773 TCGA-66-2780 TCGA-66-2782 
       16.96         0.99         0.99         3.02        12.03        12.00 
TCGA-66-2786 TCGA-66-2789 TCGA-66-2790 TCGA-66-2795 TCGA-68-7755 TCGA-68-7756 
       25.97         4.04        22.98         4.01         2.73         6.64 
TCGA-77-6845 TCGA-77-7142 TCGA-77-8136 TCGA-77-8140 TCGA-77-8144 TCGA-77-8153 
       23.28        42.28        39.09        11.54        27.39        55.36 
TCGA-77-8154 TCGA-77-A5G3 TCGA-85-6175 TCGA-85-7699 TCGA-85-8071 TCGA-85-8288 
       35.90       117.57         9.67         0.03        14.07         1.78 
TCGA-85-8352 TCGA-85-8479 TCGA-85-8580 TCGA-85-A4QR TCGA-90-7766 TCGA-92-8063 
        2.20         0.72        14.63         0.82         9.50         4.01 
TCGA-96-7544 TCGA-98-8022 TCGA-LA-A446 TCGA-NC-A5HG TCGA-NC-A5HI 
       39.88         7.36         1.18        50.89        37.32 

$`XQ LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        79.46         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 
       13.02        59.51        24.92         1.64        43.76         6.15 
TCGA-18-4721 TCGA-21-1070 TCGA-21-1071 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 
       90.54       119.54        46.88        70.16        60.89        34.78 
TCGA-21-1078 TCGA-21-1079 TCGA-21-1081 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 
       15.58        31.73         9.34        31.63        88.11        41.69 
TCGA-21-5786 TCGA-21-5787 TCGA-21-A5DI TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 
       33.93        10.82        32.19         7.33        14.93         4.31 
TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4593 
       64.21         1.74        14.10        27.02        48.82        35.08 
TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 
       48.33        24.13         0.56        38.17        34.75        13.12 
TCGA-22-4605 TCGA-22-4609 TCGA-22-5471 TCGA-22-5472 TCGA-22-5474 TCGA-22-5478 
       32.02         9.57        31.73        64.93        14.63         0.79 
TCGA-22-5479 TCGA-22-5480 TCGA-22-5482 TCGA-22-5483 TCGA-22-5489 TCGA-22-5492 
       54.28        71.34        11.74        18.84        62.86        16.64 
TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4583 
        7.63       114.05        97.94        43.10       173.82       141.34 
TCGA-33-4586 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 TCGA-34-2604 
       14.07        10.82        19.76        27.02         2.63        31.50 
TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       32.88        31.27        50.24        67.79        56.38         9.07 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-7107 
       23.24        12.00        14.07        30.94        18.15         1.12 
TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 
        3.95         0.43         0.39         6.58         8.12         7.46 
TCGA-37-4133 TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 
        7.82         3.39        47.80        74.07        44.75        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 
       55.20        70.03        24.33         1.94        27.39        36.39 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5039 TCGA-39-5040 TCGA-43-2576 TCGA-43-2578 
       15.58        35.64        17.88        17.06        40.21        22.49 
TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 
       38.66        27.02        33.11        18.05        12.36        24.89 
TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 
       10.19         5.46         3.81         7.76        66.51        13.38 
TCGA-43-8118 TCGA-43-A474 TCGA-43-A475 TCGA-43-A56U TCGA-43-A56V TCGA-46-3768 
        2.93        11.61         9.73        14.20        12.03         9.99 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7811 
       13.91         0.39        29.95        17.79         5.46         8.75 
TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-5898 TCGA-56-6545 TCGA-56-6546 
       27.45        28.96         0.10        18.25         2.04         0.62 
TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 
        0.99         1.45         1.32         0.85         0.20         0.03 
TCGA-56-8503 TCGA-56-8504 TCGA-56-8622 TCGA-56-8624 TCGA-56-8626 TCGA-56-8628 
        1.35         5.85         1.81         1.18         0.56         0.53 
TCGA-56-8629 TCGA-56-A49D TCGA-56-A4BW TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A4ZJ 
        1.12         1.25         0.07         1.51         0.99         0.82 
TCGA-56-A4ZK TCGA-56-A5DS TCGA-58-8386 TCGA-58-8387 TCGA-58-8393 TCGA-58-A46J 
        0.13         0.26         0.03        13.25        34.78        64.87 
TCGA-58-A46K TCGA-58-A46L TCGA-58-A46M TCGA-58-A46N TCGA-60-2695 TCGA-60-2697 
       34.36        36.59        23.24        17.75        21.11        12.23 
TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 
       10.22        96.82        37.94        92.71        21.73        80.45 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 
       49.48        66.54        41.42        50.33        35.34        48.49 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
       42.64         3.19        29.85        35.90        23.57        26.83 
TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 
       43.10         2.01        21.07         0.99         1.02         2.01 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2758 TCGA-66-2759 TCGA-66-2765 TCGA-66-2766 
        0.92         0.99        21.01        25.05         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2777 
        2.01         2.01         7.07        23.01        19.00         2.01 
TCGA-66-2778 TCGA-66-2781 TCGA-66-2783 TCGA-66-2785 TCGA-66-2787 TCGA-66-2788 
       19.00         3.98        24.95         1.97        40.01        22.98 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2800 TCGA-68-7757 
        5.03        30.02        10.06        54.08        49.05         6.94 
TCGA-68-8250 TCGA-68-8251 TCGA-68-A59I TCGA-68-A59J TCGA-77-6842 TCGA-77-6843 
        8.02         3.16         3.98         3.42        29.56        73.12 
TCGA-77-6844 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7335 
       75.09        11.18        89.98        20.78         0.49        70.13 
TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 TCGA-77-8008 
      106.95         0.16        46.78        15.75         6.51        86.76 
TCGA-77-8009 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8138 
       53.95        37.81        82.92        12.59        53.92        17.72 
TCGA-77-8139 TCGA-77-8143 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-77-8156 
      104.09        26.40         6.97         9.63        54.41         0.33 
TCGA-77-A5FZ TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 
      126.18        30.81        23.44         0.36        12.99         1.12 
TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 
        0.59         0.33         1.61         1.15         1.25         1.97 
TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8072 TCGA-85-8276 
        0.85         1.97         0.53        16.77        16.87         0.43 
TCGA-85-8277 TCGA-85-8287 TCGA-85-8350 TCGA-85-8351 TCGA-85-8353 TCGA-85-8354 
        0.36         1.45         1.97         1.81         1.78         2.01 
TCGA-85-8355 TCGA-85-8481 TCGA-85-8582 TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL 
        2.01         0.69        13.94         0.10        15.62         0.49 
TCGA-85-A50M TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 TCGA-90-7767 TCGA-90-7769 
        0.62         0.79         0.43        24.92         2.93        11.77 
TCGA-90-7964 TCGA-90-A4ED TCGA-90-A4EE TCGA-92-7340 TCGA-92-7341 TCGA-92-8064 
       14.07         8.02        10.88         2.70         3.48         5.26 
TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 TCGA-96-7545 TCGA-96-8169 
        2.30         2.86         0.16        11.70        44.19         6.21 
TCGA-96-8170 TCGA-96-A4JK TCGA-96-A4JL TCGA-98-7454 TCGA-98-8020 TCGA-98-8021 
        6.94         8.98         6.02         8.42         2.76        13.58 
TCGA-98-8023 TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-L3-A524 TCGA-MF-A522 TCGA-NC-A5HE 
       10.13         7.30         1.15        14.76         2.73        56.61 

  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
             0.03              0.03 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
           122.43            173.82 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
            12.43             13.48 
[1] "0.0 - 122.4 (12.4)" "0.0 - 173.8 (13.5)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V        TCGA-46-3768 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-51-4081        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-1622        TCGA-56-5897 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7579        TCGA-56-7580 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7822        TCGA-56-8503 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8624        TCGA-56-8625 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-56-A4BW        TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-56-A4ZK        TCGA-56-A5DR        TCGA-56-A5DS        TCGA-58-8386 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J        TCGA-58-A46K 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N        TCGA-60-2695 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2697        TCGA-60-2698        TCGA-60-2703 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2737        TCGA-66-2742 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2753        TCGA-66-2754        TCGA-66-2755 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2769        TCGA-66-2770        TCGA-66-2771 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2785 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-66-2790        TCGA-66-2791        TCGA-66-2792        TCGA-66-2793 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7755 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-68-7756        TCGA-68-7757        TCGA-68-8250        TCGA-68-8251 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-68-A59I        TCGA-68-A59J        TCGA-77-6842        TCGA-77-6843 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-77-A5G3        TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6175 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-96-A4JK        TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-98-8021        TCGA-98-8022        TCGA-98-8023        TCGA-J1-A4AH 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-L3-A4E7        TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-NC-A5HE        TCGA-NC-A5HG        TCGA-NC-A5HI 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" 
[1] "hr=" "1.1"
D80V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  XQ LOSS MUTATED         0       19       25        0        11        15
  XQ LOSS WILD-TYPE       1       50      111        1        39        55
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  XQ LOSS MUTATED           10          5        0
  XQ LOSS WILD-TYPE         44         15        5
D80V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  XQ LOSS MUTATED    27  43  10   7
  XQ LOSS WILD-TYPE  68 207  35  12
D80V4, multiclass
    clus
vv   XQ LOSS MUTATED XQ LOSS WILD-TYPE
  T1              27                68
  T2              43               207
  T3              10                35
  T4               7                12
                   vv
clus                 N0  N1  N2  N3
  XQ LOSS MUTATED    56  26   4   1
  XQ LOSS WILD-TYPE 199  83  30   4
D80V5, multiclass
    clus
vv   XQ LOSS MUTATED XQ LOSS WILD-TYPE
  N0              56               199
  N1              26                83
  N2               4                30
  N3               1                 4
                   vv
clus                 M0  M1  MX
  XQ LOSS MUTATED    75   0   9
  XQ LOSS WILD-TYPE 274   5  40
D80V6, multiclass
    clus
vv   XQ LOSS MUTATED XQ LOSS WILD-TYPE
  M0              75               274
  M1               0                 5
  MX               9                40
D80V7, binary
                   cls
clus                  0   1
  XQ LOSS MUTATED    26  61
  XQ LOSS WILD-TYPE  78 244
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ LOSS MUTATED     26   61
  XQ LOSS WILD-TYPE   78  244
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  FEMALE              26                78
  MALE                61               244
D80V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  XQ LOSS MUTATED                                       3
  XQ LOSS WILD-TYPE                                     9
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  XQ LOSS MUTATED                                        1
  XQ LOSS WILD-TYPE                                      5
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  XQ LOSS MUTATED                                         1
  XQ LOSS WILD-TYPE                                       0
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  XQ LOSS MUTATED                                                            82
  XQ LOSS WILD-TYPE                                                         308
D80V9, multiclass
                                                             clus
vv                                                            XQ LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     3
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              82
                                                             clus
vv                                                            XQ LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       9
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               308
D80V10, binary
                   cls
clus                  0   1
  XQ LOSS MUTATED     3  84
  XQ LOSS WILD-TYPE  10 312
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ LOSS MUTATED      3   84
  XQ LOSS WILD-TYPE   10  312
     clus
vv    XQ LOSS MUTATED XQ LOSS WILD-TYPE
  NO                3                10
  YES              84               312
D80V11, continuous
D80V12, continuous
                   vv
clus                 R0  R1  R2  RX
  XQ LOSS MUTATED    73   1   0   3
  XQ LOSS WILD-TYPE 259   7   4  15
D80V13, multiclass
    clus
vv   XQ LOSS MUTATED XQ LOSS WILD-TYPE
  R0              73               259
  R1               1                 7
  R2               0                 4
  RX               3                15
> q(save="no")
