		Clinical Features	MRNA_CNMF		MRNA_CHIERARCHICAL		CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
amp_1q21.2	253 (52%)	237	0.039337	1	0.042084	1	1.2802e-11	1.21e-08	7.1056e-07	0.000627	0.18581	1	0.02022	1	5.5119e-08	5.01e-05	2.1385e-08	1.96e-05	0.0013992	0.991	0.00012187	0.0977	0.013607	1	0.014627	1
amp_2p16.1	271 (55%)	219	0.0013247	0.944	0.00016277	0.129	5.708e-15	5.45e-12	1.6792e-06	0.00146	0.94107	1	0.41001	1	2.0075e-11	1.89e-08	2.2786e-08	2.08e-05	2.2105e-05	0.0184	0.0007138	0.526	0.0019015	1	0.00022569	0.176
amp_2q31.2	168 (34%)	322	0.019503	1	0.027298	1	3.0722e-07	0.000275	3.1317e-06	0.00268	0.70612	1	0.49859	1	1.7744e-06	0.00153	3.317e-05	0.0273	0.01536	1	0.69153	1	0.00016523	0.13	0.00041497	0.312
amp_3p11.1	96 (20%)	394	0.10591	1	0.81848	1	0.57708	1	0.82799	1	0.31188	1	0.0008128	0.596	0.21542	1	0.90756	1	0.1404	1	0.71368	1	0.74447	1	0.11715	1
amp_3q26.33	442 (90%)	48	0.00041317	0.312	2.2666e-05	0.0188	2.2258e-14	2.12e-11	5.4159e-09	4.99e-06	0.2723	1	0.040324	1	2.0893e-10	1.96e-07	5.1977e-09	4.8e-06	3.5721e-08	3.26e-05	3.1119e-06	0.00267	0.0038387	1	0.00016051	0.127
amp_4q12	114 (23%)	376	0.87803	1	0.20752	1	0.00025555	0.197	0.06873	1	0.28324	1	0.075491	1	0.083118	1	0.07857	1	0.0023071	1	0.58622	1	0.044726	1	1	1
amp_5p15.33	378 (77%)	112	0.8428	1	0.96397	1	2.7673e-10	2.59e-07	0.033856	1	0.38991	1	0.5009	1	0.54989	1	0.056853	1	0.64502	1	0.029304	1	0.35938	1	0.43167	1
amp_5p12	346 (71%)	144	0.94901	1	1	1	2.0904e-09	1.94e-06	0.010408	1	0.20615	1	0.98689	1	0.30326	1	0.67486	1	0.94449	1	0.14356	1	0.67169	1	0.90457	1
amp_6p12.1	162 (33%)	328	0.64926	1	0.73067	1	3.1513e-05	0.026	0.052659	1	0.93033	1	0.23139	1	0.0020196	1	0.10742	1	0.55625	1	0.23703	1	0.023339	1	0.0032522	1
amp_6q12	147 (30%)	343	0.82101	1	0.65321	1	0.00023495	0.183	0.0010969	0.79	0.50448	1	0.38248	1	0.0015635	1	0.0024868	1	0.27752	1	0.13084	1	0.24808	1	0.0077669	1
amp_7p11.2	249 (51%)	241	0.1147	1	0.066132	1	1.8503e-06	0.00159	0.0019506	1	0.69231	1	0.86024	1	0.0022318	1	0.00024745	0.191	0.035997	1	0.070899	1	0.011278	1	0.046773	1
amp_7q21.2	258 (53%)	232	0.10102	1	0.10821	1	8.2842e-15	7.89e-12	1.0203e-06	0.000893	0.073076	1	0.333	1	4.4082e-07	0.000391	1.6794e-06	0.00146	0.00072831	0.536	0.0049641	1	0.0042865	1	0.0012722	0.91
amp_8p11.23	232 (47%)	258	0.013795	1	0.46024	1	0.00062381	0.462	0.018978	1	0.18923	1	0.1001	1	0.038442	1	0.94939	1	0.69493	1	0.16281	1	0.78015	1	0.22078	1
amp_8q24.21	342 (70%)	148	0.91827	1	0.78513	1	0.0063584	1	0.32954	1	0.82552	1	0.75421	1	0.8285	1	0.93626	1	0.51116	1	0.67183	1	0.34771	1	1	1
amp_9p13.3	134 (27%)	356	0.124	1	0.82407	1	0.0025257	1	0.0022079	1	0.071177	1	0.0096005	1	0.00063607	0.47	0.00016024	0.127	0.032905	1	0.32297	1	0.10287	1	0.081063	1
amp_11q13.3	181 (37%)	309	0.048396	1	0.067186	1	9.4885e-07	0.000833	0.00023958	0.186	0.25521	1	0.039019	1	0.014715	1	0.024354	1	0.0016498	1	0.10442	1	0.024972	1	0.42478	1
amp_12p13.33	249 (51%)	241	0.0076593	1	0.044129	1	1.829e-07	0.000164	0.00095019	0.69	0.35622	1	0.79411	1	1.6738e-07	0.000151	5.142e-05	0.042	0.025853	1	0.022655	1	0.20446	1	0.058797	1
amp_12q15	178 (36%)	312	0.13572	1	0.19888	1	7.449e-05	0.0602	0.014356	1	0.75988	1	0.5214	1	0.010916	1	0.0055463	1	0.64539	1	0.36979	1	0.083078	1	0.1681	1
amp_13q34	88 (18%)	402	0.97743	1	0.022866	1	0.34987	1	0.71254	1	0.83546	1	0.08641	1	0.83641	1	0.70324	1	0.38282	1	0.14866	1	0.63848	1	0.56675	1
amp_14q13.3	154 (31%)	336	0.31292	1	0.19369	1	0.14539	1	0.13717	1	0.69791	1	0.0081772	1	0.15551	1	0.032332	1	0.0091929	1	0.17143	1	0.28738	1	0.71873	1
amp_15q26.3	176 (36%)	314	0.35809	1	0.064746	1	8.011e-06	0.00681	0.00040706	0.308	0.43944	1	0.036995	1	1.5673e-05	0.0131	0.00079131	0.581	0.0086515	1	0.0019762	1	0.0076098	1	0.014407	1
amp_17q25.1	233 (48%)	257	0.0087194	1	0.021019	1	9.1916e-14	8.72e-11	4.7654e-08	4.34e-05	0.38271	1	0.31433	1	5.4169e-06	0.00462	9.2676e-08	8.37e-05	0.00014823	0.118	0.022324	1	1.0383e-05	0.00879	3.0891e-06	0.00265
amp_18p11.32	175 (36%)	315	0.042881	1	0.0107	1	7.6192e-08	6.9e-05	2.5712e-05	0.0213	0.49494	1	0.48431	1	0.030998	1	0.00046839	0.351	0.0022262	1	0.045463	1	0.0058766	1	0.020024	1
amp_18q11.2	148 (30%)	342	0.00035999	0.274	0.02841	1	7.7159e-09	7.11e-06	2.3091e-05	0.0192	0.25103	1	0.35889	1	1.675e-06	0.00145	2.2147e-09	2.06e-06	0.00082097	0.6	0.0052954	1	0.00016674	0.131	0.0001881	0.148
amp_19q12	218 (44%)	272	0.36988	1	0.56521	1	1.712e-11	1.61e-08	0.0016895	1	0.22456	1	0.052154	1	0.0019946	1	0.0025906	1	0.1408	1	0.43951	1	0.021991	1	0.034297	1
amp_19q13.2	229 (47%)	261	0.33935	1	0.42102	1	2.3472e-09	2.18e-06	0.0030608	1	0.36844	1	0.27937	1	0.0027647	1	0.0011721	0.843	0.34489	1	0.49803	1	0.061117	1	0.076625	1
amp_20p12.2	273 (56%)	217	0.0010449	0.755	0.0096931	1	5.8086e-10	5.41e-07	0.0002485	0.192	0.91413	1	0.37818	1	0.0039421	1	5.1831e-05	0.0423	0.0096035	1	0.34436	1	0.03821	1	0.43471	1
amp_20q11.21	298 (61%)	192	0.81086	1	0.87166	1	3.5779e-07	0.000319	0.0052227	1	0.78766	1	0.71539	1	0.57034	1	0.34618	1	0.12619	1	0.061014	1	0.050744	1	0.73357	1
amp_22q11.21	253 (52%)	237	0.11363	1	0.30827	1	0.00013483	0.108	0.0010533	0.76	0.83001	1	0.58907	1	8.839e-05	0.0712	0.028524	1	0.041312	1	0.26455	1	0.0048037	1	0.37566	1
amp_xq28	122 (25%)	368	0.87318	1	0.76733	1	0.020081	1	0.047983	1	0.037745	1	0.086268	1	0.085748	1	0.21566	1	0.0060414	1	0.031395	1	0.079957	1	0.014329	1
del_1p36.32	213 (43%)	277	4.9516e-07	0.000439	4.0835e-08	3.72e-05	1.7241e-35	1.66e-32	1.977e-19	1.89e-16	0.36739	1	0.012804	1	6.3127e-21	6.05e-18	1.0455e-25	1e-22	1.1761e-06	0.00102	2.9395e-06	0.00253	0.0019922	1	3.6784e-07	0.000328
del_1p13.1	212 (43%)	278	0.00016432	0.13	1.2161e-05	0.0103	1.2319e-20	1.18e-17	5.4928e-12	5.2e-09	0.039934	1	0.068581	1	5.28e-12	5e-09	3.454e-14	3.28e-11	3.1254e-08	2.86e-05	9.5278e-07	0.000836	0.0098716	1	1.0595e-05	0.00896
del_2p25.3	50 (10%)	440	0.12345	1	0.02934	1	0.13322	1	0.39154	1	0.27399	1	0.81118	1	0.44292	1	0.079033	1	0.022749	1	0.42819	1	0.06845	1	0.17293	1
del_2q22.1	124 (25%)	366	0.313	1	0.36315	1	2.5945e-07	0.000232	0.00028791	0.22	0.39113	1	0.084343	1	0.0021077	1	0.0014447	1	0.00012617	0.101	0.030759	1	0.00020936	0.164	0.019883	1
del_2q37.1	155 (32%)	335	0.0032884	1	0.0020625	1	5.6464e-10	5.27e-07	6.3148e-07	0.000558	0.38046	1	0.3685	1	1.2826e-06	0.00112	1.9597e-05	0.0163	1.3281e-05	0.0112	0.64957	1	1.093e-05	0.00924	0.00050712	0.379
del_3p25.3	389 (79%)	101	0.384	1	0.25312	1	0.0093349	1	0.00093698	0.681	0.86759	1	0.18115	1	0.0089776	1	0.000554	0.413	0.00085708	0.626	0.014193	1	0.10186	1	0.021228	1
del_3p13	424 (87%)	66	0.26122	1	0.79957	1	1.3293e-07	0.00012	0.00027295	0.209	0.76382	1	0.02164	1	0.0024459	1	8.9941e-05	0.0724	4.8265e-05	0.0395	0.01685	1	0.0013574	0.964	0.0002839	0.217
del_3p12.3	413 (84%)	77	0.1595	1	0.88966	1	1.1688e-06	0.00102	0.00022577	0.176	1	1	0.037749	1	0.0049695	1	0.00018759	0.147	0.00025901	0.199	0.065031	1	0.012099	1	0.0095199	1
del_3q11.1	77 (16%)	413	0.76001	1	0.62576	1	0.2123	1	0.93704	1	0.76356	1	0.29066	1	0.70309	1	0.055077	1	0.76397	1	0.48945	1	0.42886	1	0.22606	1
del_4p15.2	307 (63%)	183	0.00019585	0.153	0.004116	1	8.0628e-10	7.51e-07	1.7483e-06	0.00151	0.76455	1	0.026773	1	0.0002105	0.164	7.3027e-07	0.000644	0.0015278	1	0.7774	1	0.0010287	0.745	0.00085702	0.626
del_4q22.1	278 (57%)	212	0.0032628	1	0.04659	1	1.6777e-07	0.000151	0.0014959	1	0.10963	1	0.40722	1	0.00018182	0.143	0.0040982	1	0.02756	1	0.054165	1	0.10407	1	0.12023	1
del_4q32.3	322 (66%)	168	0.0065768	1	0.021619	1	7.3656e-11	6.92e-08	7.9557e-05	0.0642	0.065861	1	0.57154	1	7.4332e-06	0.00633	0.00024506	0.19	0.0006377	0.471	0.0088631	1	0.0015115	1	0.00012364	0.099
del_4q35.2	323 (66%)	167	0.068421	1	0.38354	1	1.0585e-09	9.84e-07	3.5252e-05	0.029	0.36112	1	0.58431	1	9.4465e-06	0.00802	0.0049451	1	0.0030544	1	0.016558	1	0.040341	1	0.00050999	0.38
del_5q11.2	360 (73%)	130	0.48187	1	0.41639	1	3.6373e-13	3.45e-10	1.9483e-05	0.0162	1	1	0.2986	1	0.0016434	1	0.01273	1	0.020377	1	2.7588e-05	0.0228	0.0013868	0.983	0.0017825	1
del_6p25.3	128 (26%)	362	0.32137	1	0.047239	1	1.3337e-05	0.0112	3.2361e-05	0.0267	0.37398	1	0.013491	1	3.3896e-07	0.000303	1.0182e-08	9.36e-06	0.064355	1	0.0056616	1	0.070518	1	0.0085613	1
del_6q22.31	118 (24%)	372	0.040522	1	0.022554	1	5.7231e-05	0.0465	0.0017109	1	0.46571	1	0.24548	1	0.00058802	0.437	0.0014927	1	0.082745	1	0.049615	1	0.071994	1	0.049794	1
del_6q26	130 (27%)	360	0.042415	1	0.016133	1	1.756e-05	0.0147	0.00014708	0.117	0.90534	1	0.68409	1	0.00038527	0.292	0.00061022	0.453	0.031924	1	0.031597	1	0.028	1	0.016795	1
del_7q11.22	47 (10%)	443	0.80152	1	0.10838	1	0.00042867	0.322	0.77637	1	0.83978	1	0.6133	1	0.0018286	1	0.041767	1	0.64722	1	0.69447	1	0.73102	1	0.72386	1
del_7q36.3	103 (21%)	387	0.17586	1	0.13393	1	0.0011762	0.844	0.28863	1	0.96756	1	0.21802	1	0.00029497	0.225	0.0019769	1	0.3464	1	0.50371	1	0.06436	1	0.89249	1
del_8p23.2	335 (68%)	155	0.5849	1	0.78883	1	3.8881e-05	0.0319	0.013594	1	0.23252	1	0.089962	1	0.11212	1	0.053846	1	0.14486	1	0.17547	1	0.41374	1	0.057711	1
del_9p23	323 (66%)	167	0.010406	1	0.0070636	1	3.5834e-08	3.27e-05	0.020944	1	0.19683	1	0.2528	1	6.4626e-05	0.0523	0.020149	1	0.0011942	0.856	0.0042184	1	0.010591	1	1	1
del_9p21.3	378 (77%)	112	0.19571	1	0.26054	1	1.7644e-06	0.00152	0.29789	1	0.82392	1	0.4272	1	0.00061463	0.456	0.37584	1	0.16463	1	0.26098	1	0.041983	1	1	1
del_9q21.11	248 (51%)	242	0.00024438	0.189	5.9555e-05	0.0483	4.4799e-11	4.22e-08	2.7403e-09	2.54e-06	0.55013	1	0.1548	1	1.1002e-14	1.05e-11	1.0226e-17	9.77e-15	4.0144e-05	0.0329	6.5721e-08	5.95e-05	0.0019679	1	0.046149	1
del_10p15.3	222 (45%)	268	0.32279	1	0.48716	1	8.4677e-08	7.65e-05	1.5896e-10	1.49e-07	0.16773	1	0.37288	1	4.0793e-06	0.00349	1.1556e-05	0.00975	8.1878e-07	0.000721	5.5068e-06	0.00469	0.0045589	1	0.0053334	1
del_10p15.1	210 (43%)	280	0.13289	1	0.51542	1	3.622e-06	0.0031	4.4824e-11	4.22e-08	0.21046	1	0.41371	1	2.2219e-07	0.000199	1.8373e-05	0.0153	1.3862e-07	0.000125	1.0967e-06	0.000959	0.04501	1	0.0034335	1
del_10q23.31	259 (53%)	231	0.0033464	1	0.0033511	1	1.8616e-08	1.71e-05	1.8283e-08	1.68e-05	0.15151	1	0.22857	1	3.7875e-09	3.5e-06	2.25e-10	2.11e-07	0.0003054	0.233	5.8516e-05	0.0475	2.5354e-06	0.00218	0.0026773	1
del_11p15.5	239 (49%)	251	0.00041334	0.312	0.053768	1	6.1355e-08	5.56e-05	0.0048589	1	0.00034771	0.265	1.4764e-06	0.00128	0.010429	1	0.23702	1	0.040194	1	0.40002	1	0.0016834	1	0.04592	1
del_11q22.1	158 (32%)	332	0.55178	1	0.30704	1	0.00021964	0.171	0.00043381	0.326	0.15045	1	0.9345	1	0.024345	1	0.0013512	0.961	0.0014025	0.992	0.5732	1	0.017243	1	0.0050631	1
del_11q25	182 (37%)	308	0.7875	1	0.59625	1	0.0014326	1	0.049746	1	0.17182	1	0.84182	1	0.015438	1	0.0012318	0.882	0.010091	1	0.50425	1	0.052628	1	0.016481	1
del_12q24.31	85 (17%)	405	0.87985	1	0.59385	1	0.36938	1	0.25735	1	0.19685	1	0.26731	1	0.72133	1	0.53607	1	0.44738	1	0.045045	1	0.43643	1	1	1
del_13q12.11	326 (67%)	164	0.10647	1	0.46278	1	0.0022185	1	0.11924	1	0.87549	1	0.17967	1	0.77764	1	0.62028	1	0.76514	1	0.28103	1	0.041615	1	0.098638	1
del_13q14.2	337 (69%)	153	0.11797	1	0.34557	1	0.00081573	0.597	0.020532	1	0.69508	1	0.6766	1	0.52546	1	0.17224	1	0.17375	1	0.23245	1	0.0049414	1	0.012011	1
del_14q11.2	171 (35%)	319	0.038068	1	0.15876	1	0.57651	1	0.99323	1	0.25684	1	0.26329	1	1.58e-05	0.0132	3.9327e-07	0.00035	0.0065088	1	0.066375	1	0.44406	1	0.30097	1
del_15q12	169 (34%)	321	0.69299	1	0.69759	1	0.10025	1	0.16139	1	0.038706	1	0.012325	1	0.1643	1	0.0032129	1	0.0098719	1	0.92198	1	0.28202	1	0.63394	1
del_15q21.1	162 (33%)	328	0.44743	1	0.52426	1	0.023125	1	0.20494	1	0.093159	1	0.0088646	1	0.20239	1	0.0010932	0.788	0.0032544	1	0.63526	1	0.11194	1	0.40343	1
del_16p13.3	181 (37%)	309	0.25336	1	0.33897	1	0.0012798	0.914	0.049615	1	0.21012	1	0.4744	1	0.61526	1	0.096741	1	0.01595	1	0.91792	1	0.10713	1	0.20766	1
del_16q23.1	204 (42%)	286	0.91102	1	0.3109	1	0.0047198	1	0.20973	1	0.36199	1	0.74562	1	0.061389	1	0.10025	1	0.024987	1	0.25789	1	0.00045488	0.341	0.00239	1
del_17q11.2	128 (26%)	362	0.00012966	0.104	0.00048624	0.364	1.0121e-06	0.000887	1.0307e-05	0.00874	0.37009	1	0.29938	1	9.6299e-09	8.86e-06	1.6108e-11	1.52e-08	0.17546	1	0.0027303	1	0.015301	1	0.00089787	0.654
del_17q25.3	100 (20%)	390	0.0050423	1	0.015991	1	0.0020186	1	0.029397	1	0.61116	1	0.98807	1	0.0050666	1	0.00026357	0.202	0.89115	1	0.033129	1	0.38262	1	0.013987	1
del_18q23	227 (46%)	263	0.5874	1	0.32104	1	0.015778	1	0.20106	1	0.89421	1	0.25827	1	0.89945	1	0.2617	1	0.17987	1	0.63258	1	0.06142	1	0.26918	1
del_19p13.3	229 (47%)	261	0.43899	1	0.0089684	1	0.00010334	0.083	0.77726	1	0.090998	1	0.12411	1	0.14678	1	0.0051263	1	0.04746	1	0.0025009	1	0.32583	1	0.82392	1
del_19q13.32	143 (29%)	347	0.82014	1	0.22659	1	5.887e-08	5.35e-05	1.2288e-05	0.0103	0.16478	1	0.72088	1	0.0063981	1	0.0016126	1	0.004835	1	0.82741	1	0.20929	1	0.019608	1
del_21q11.2	241 (49%)	249	0.5578	1	0.47329	1	4.8575e-05	0.0397	0.14651	1	0.98024	1	0.97214	1	0.10367	1	0.020896	1	9.1698e-05	0.0737	0.055844	1	0.015189	1	0.18343	1
del_21q22.3	276 (56%)	214	0.76444	1	0.14202	1	1.8355e-07	0.000165	0.041778	1	0.51356	1	0.12742	1	0.15265	1	0.0031918	1	0.00015895	0.126	0.082626	1	0.21516	1	0.035621	1
del_22q11.21	92 (19%)	398	0.031147	1	0.16383	1	0.31279	1	0.067275	1	0.13078	1	0.12813	1	0.15282	1	0.045827	1	0.40582	1	0.81622	1	0.54738	1	0.88385	1
del_22q13.32	125 (26%)	365	0.00024821	0.192	0.0023727	1	0.11392	1	0.015179	1	0.4041	1	0.076322	1	0.00019119	0.15	3.418e-05	0.0281	0.053923	1	0.00061543	0.456	0.91337	1	0.61251	1
del_xp22.2	151 (31%)	339	0.71959	1	0.77766	1	5.9756e-05	0.0484	0.00015403	0.122	0.42455	1	0.77154	1	0.021011	1	0.076779	1	0.0016784	1	0.040778	1	0.00097277	0.705	4.4124e-07	0.000391
del_xp21.1	149 (30%)	341	0.45787	1	0.6454	1	1.1594e-06	0.00101	8.7745e-07	0.000772	0.26354	1	0.75352	1	0.00039746	0.301	0.0024023	1	2.443e-05	0.0203	0.019866	1	0.00028043	0.215	5.6381e-10	5.27e-07
del_xp11.3	145 (30%)	345	0.098243	1	0.6454	1	3.7853e-07	0.000337	5.9956e-07	0.000531	0.10533	1	0.085973	1	0.00078803	0.579	0.0014387	1	4.9649e-06	0.00424	0.016159	1	5.4844e-05	0.0446	3.0921e-09	2.86e-06
del_xq22.3	110 (22%)	380	0.022429	1	0.0042216	1	1.7605e-05	0.0147	9.305e-07	0.000818	0.87451	1	0.93475	1	0.0013402	0.954	0.060586	1	5.4549e-05	0.0445	0.20551	1	0.00038674	0.293	0.0075935	1
