Pipeline Input Name	Archive Result File REF	Comment [TCGA Archive Name]	Protocol REF	Data Transformation Name	Derived Data File	Comment [TCGA Data Type]	Comment [TCGA Data Level]	Comment [TCGA File Type]	Comment [TCGA Archive Name]	Comment [TCGA Include for Analysis]
GDAC_Correlate_Genomic_Events:clinical.info.file	MESO-TP.transferedmergedcluster.txt	gdac.broadinstitute.org_MESO-TP.Aggregate_Molecular_Subtype_Clusters.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Arm_2014041600	table.1.txt	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	txt	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Arm.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events:clinical.info.file	MESO-TP.transferedmergedcluster.txt	gdac.broadinstitute.org_MESO-TP.Aggregate_Molecular_Subtype_Clusters.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Arm_2014041600	D13V1.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Arm.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events:clinical.info.file	MESO-TP.transferedmergedcluster.txt	gdac.broadinstitute.org_MESO-TP.Aggregate_Molecular_Subtype_Clusters.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Arm_2014041600	D37V2.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Arm.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events:clinical.info.file	MESO-TP.transferedmergedcluster.txt	gdac.broadinstitute.org_MESO-TP.Aggregate_Molecular_Subtype_Clusters.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Arm_2014041600	D52V4.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Arm.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events:clinical.info.file	MESO-TP.transferedmergedcluster.txt	gdac.broadinstitute.org_MESO-TP.Aggregate_Molecular_Subtype_Clusters.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Arm_2014041600	D48V1.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Arm.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events:clinical.info.file	MESO-TP.transferedmergedcluster.txt	gdac.broadinstitute.org_MESO-TP.Aggregate_Molecular_Subtype_Clusters.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Arm_2014041600	D38V1.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Arm.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events:clinical.info.file	MESO-TP.transferedmergedcluster.txt	gdac.broadinstitute.org_MESO-TP.Aggregate_Molecular_Subtype_Clusters.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Arm_2014041600	D52V1.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Arm.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events:clinical.info.file	MESO-TP.transferedmergedcluster.txt	gdac.broadinstitute.org_MESO-TP.Aggregate_Molecular_Subtype_Clusters.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Arm_2014041600	D52V2.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Arm.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events:clinical.info.file	MESO-TP.transferedmergedcluster.txt	gdac.broadinstitute.org_MESO-TP.Aggregate_Molecular_Subtype_Clusters.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Arm_2014041600	D51V5.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Arm.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events:clinical.info.file	MESO-TP.transferedmergedcluster.txt	gdac.broadinstitute.org_MESO-TP.Aggregate_Molecular_Subtype_Clusters.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Arm_2014041600	D51V6.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Arm.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events:clinical.info.file	MESO-TP.transferedmergedcluster.txt	gdac.broadinstitute.org_MESO-TP.Aggregate_Molecular_Subtype_Clusters.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Arm_2014041600	D19V1.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Arm.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events:clinical.info.file	MESO-TP.transferedmergedcluster.txt	gdac.broadinstitute.org_MESO-TP.Aggregate_Molecular_Subtype_Clusters.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Arm_2014041600	D37V4.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Arm.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events:clinical.info.file	MESO-TP.transferedmergedcluster.txt	gdac.broadinstitute.org_MESO-TP.Aggregate_Molecular_Subtype_Clusters.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Arm_2014041600	D6V4.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Arm.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events:clinical.info.file	MESO-TP.transferedmergedcluster.txt	gdac.broadinstitute.org_MESO-TP.Aggregate_Molecular_Subtype_Clusters.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Arm_2014041600	D37V3.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Arm.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events:clinical.info.file	MESO-TP.transferedmergedcluster.txt	gdac.broadinstitute.org_MESO-TP.Aggregate_Molecular_Subtype_Clusters.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Arm_2014041600	D14V1.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Arm.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events:clinical.info.file	MESO-TP.transferedmergedcluster.txt	gdac.broadinstitute.org_MESO-TP.Aggregate_Molecular_Subtype_Clusters.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Arm_2014041600	D33V1.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Arm.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events:clinical.info.file	MESO-TP.transferedmergedcluster.txt	gdac.broadinstitute.org_MESO-TP.Aggregate_Molecular_Subtype_Clusters.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Arm_2014041600	D39V1.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Arm.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events:clinical.info.file	MESO-TP.transferedmergedcluster.txt	gdac.broadinstitute.org_MESO-TP.Aggregate_Molecular_Subtype_Clusters.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Arm_2014041600	D52V4.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Arm.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events:clinical.info.file	MESO-TP.transferedmergedcluster.txt	gdac.broadinstitute.org_MESO-TP.Aggregate_Molecular_Subtype_Clusters.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Arm_2014041600	D33V1.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Arm.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events:clinical.info.file	MESO-TP.transferedmergedcluster.txt	gdac.broadinstitute.org_MESO-TP.Aggregate_Molecular_Subtype_Clusters.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Arm_2014041600	D14V1.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Arm.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events:clinical.info.file	MESO-TP.transferedmergedcluster.txt	gdac.broadinstitute.org_MESO-TP.Aggregate_Molecular_Subtype_Clusters.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Arm_2014041600	D48V1.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Arm.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events:clinical.info.file	MESO-TP.transferedmergedcluster.txt	gdac.broadinstitute.org_MESO-TP.Aggregate_Molecular_Subtype_Clusters.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Arm_2014041600	D51V5.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Arm.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events:clinical.info.file	MESO-TP.transferedmergedcluster.txt	gdac.broadinstitute.org_MESO-TP.Aggregate_Molecular_Subtype_Clusters.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Arm_2014041600	D51V6.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Arm.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events:clinical.info.file	MESO-TP.transferedmergedcluster.txt	gdac.broadinstitute.org_MESO-TP.Aggregate_Molecular_Subtype_Clusters.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Arm_2014041600	D19V1.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Arm.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events:clinical.info.file	MESO-TP.transferedmergedcluster.txt	gdac.broadinstitute.org_MESO-TP.Aggregate_Molecular_Subtype_Clusters.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Arm_2014041600	D6V4.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Arm.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events:clinical.info.file	MESO-TP.transferedmergedcluster.txt	gdac.broadinstitute.org_MESO-TP.Aggregate_Molecular_Subtype_Clusters.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Arm_2014041600	D37V2.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Arm.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events:clinical.info.file	MESO-TP.transferedmergedcluster.txt	gdac.broadinstitute.org_MESO-TP.Aggregate_Molecular_Subtype_Clusters.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Arm_2014041600	D39V1.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Arm.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events:clinical.info.file	MESO-TP.transferedmergedcluster.txt	gdac.broadinstitute.org_MESO-TP.Aggregate_Molecular_Subtype_Clusters.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Arm_2014041600	D13V1.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Arm.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events:clinical.info.file	MESO-TP.transferedmergedcluster.txt	gdac.broadinstitute.org_MESO-TP.Aggregate_Molecular_Subtype_Clusters.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Arm_2014041600	D37V3.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Arm.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events:clinical.info.file	MESO-TP.transferedmergedcluster.txt	gdac.broadinstitute.org_MESO-TP.Aggregate_Molecular_Subtype_Clusters.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Arm_2014041600	D38V1.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Arm.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events:clinical.info.file	MESO-TP.transferedmergedcluster.txt	gdac.broadinstitute.org_MESO-TP.Aggregate_Molecular_Subtype_Clusters.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Arm_2014041600	D37V4.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Arm.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events:clinical.info.file	MESO-TP.transferedmergedcluster.txt	gdac.broadinstitute.org_MESO-TP.Aggregate_Molecular_Subtype_Clusters.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Arm_2014041600	D52V2.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Arm.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events:clinical.info.file	MESO-TP.transferedmergedcluster.txt	gdac.broadinstitute.org_MESO-TP.Aggregate_Molecular_Subtype_Clusters.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Arm_2014041600	D52V1.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Arm.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events:clinical.info.file	MESO-TP.transferedmergedcluster.txt	gdac.broadinstitute.org_MESO-TP.Aggregate_Molecular_Subtype_Clusters.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Arm_2014041600	nozzle.html	report	Level_4	html	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Arm.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events:clinical.info.file	MESO-TP.transferedmergedcluster.txt	gdac.broadinstitute.org_MESO-TP.Aggregate_Molecular_Subtype_Clusters.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Arm_2014041600	nozzle.RData	report	Level_4	RData	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Arm.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	broad_values_by_arm.txt	gdac.broadinstitute.org_MESO-TP.CopyNumber_Gistic2.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Arm_2014041600	table.1.txt	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	txt	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Arm.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	broad_values_by_arm.txt	gdac.broadinstitute.org_MESO-TP.CopyNumber_Gistic2.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Arm_2014041600	D13V1.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Arm.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	broad_values_by_arm.txt	gdac.broadinstitute.org_MESO-TP.CopyNumber_Gistic2.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Arm_2014041600	D37V2.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Arm.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	broad_values_by_arm.txt	gdac.broadinstitute.org_MESO-TP.CopyNumber_Gistic2.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Arm_2014041600	D52V4.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Arm.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	broad_values_by_arm.txt	gdac.broadinstitute.org_MESO-TP.CopyNumber_Gistic2.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Arm_2014041600	D48V1.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Arm.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	broad_values_by_arm.txt	gdac.broadinstitute.org_MESO-TP.CopyNumber_Gistic2.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Arm_2014041600	D38V1.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Arm.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	broad_values_by_arm.txt	gdac.broadinstitute.org_MESO-TP.CopyNumber_Gistic2.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Arm_2014041600	D52V1.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Arm.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	broad_values_by_arm.txt	gdac.broadinstitute.org_MESO-TP.CopyNumber_Gistic2.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Arm_2014041600	D52V2.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Arm.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	broad_values_by_arm.txt	gdac.broadinstitute.org_MESO-TP.CopyNumber_Gistic2.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Arm_2014041600	D51V5.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Arm.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	broad_values_by_arm.txt	gdac.broadinstitute.org_MESO-TP.CopyNumber_Gistic2.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Arm_2014041600	D51V6.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Arm.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	broad_values_by_arm.txt	gdac.broadinstitute.org_MESO-TP.CopyNumber_Gistic2.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Arm_2014041600	D19V1.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Arm.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	broad_values_by_arm.txt	gdac.broadinstitute.org_MESO-TP.CopyNumber_Gistic2.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Arm_2014041600	D37V4.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Arm.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	broad_values_by_arm.txt	gdac.broadinstitute.org_MESO-TP.CopyNumber_Gistic2.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Arm_2014041600	D6V4.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Arm.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	broad_values_by_arm.txt	gdac.broadinstitute.org_MESO-TP.CopyNumber_Gistic2.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Arm_2014041600	D37V3.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Arm.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	broad_values_by_arm.txt	gdac.broadinstitute.org_MESO-TP.CopyNumber_Gistic2.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Arm_2014041600	D14V1.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Arm.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	broad_values_by_arm.txt	gdac.broadinstitute.org_MESO-TP.CopyNumber_Gistic2.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Arm_2014041600	D33V1.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Arm.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	broad_values_by_arm.txt	gdac.broadinstitute.org_MESO-TP.CopyNumber_Gistic2.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Arm_2014041600	D39V1.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Arm.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	broad_values_by_arm.txt	gdac.broadinstitute.org_MESO-TP.CopyNumber_Gistic2.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Arm_2014041600	D52V4.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Arm.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	broad_values_by_arm.txt	gdac.broadinstitute.org_MESO-TP.CopyNumber_Gistic2.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Arm_2014041600	D33V1.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Arm.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	broad_values_by_arm.txt	gdac.broadinstitute.org_MESO-TP.CopyNumber_Gistic2.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Arm_2014041600	D14V1.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Arm.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	broad_values_by_arm.txt	gdac.broadinstitute.org_MESO-TP.CopyNumber_Gistic2.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Arm_2014041600	D48V1.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Arm.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	broad_values_by_arm.txt	gdac.broadinstitute.org_MESO-TP.CopyNumber_Gistic2.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Arm_2014041600	D51V5.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Arm.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	broad_values_by_arm.txt	gdac.broadinstitute.org_MESO-TP.CopyNumber_Gistic2.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Arm_2014041600	D51V6.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Arm.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	broad_values_by_arm.txt	gdac.broadinstitute.org_MESO-TP.CopyNumber_Gistic2.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Arm_2014041600	D19V1.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Arm.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	broad_values_by_arm.txt	gdac.broadinstitute.org_MESO-TP.CopyNumber_Gistic2.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Arm_2014041600	D6V4.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Arm.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	broad_values_by_arm.txt	gdac.broadinstitute.org_MESO-TP.CopyNumber_Gistic2.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Arm_2014041600	D37V2.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Arm.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	broad_values_by_arm.txt	gdac.broadinstitute.org_MESO-TP.CopyNumber_Gistic2.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Arm_2014041600	D39V1.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Arm.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	broad_values_by_arm.txt	gdac.broadinstitute.org_MESO-TP.CopyNumber_Gistic2.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Arm_2014041600	D13V1.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Arm.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	broad_values_by_arm.txt	gdac.broadinstitute.org_MESO-TP.CopyNumber_Gistic2.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Arm_2014041600	D37V3.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Arm.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	broad_values_by_arm.txt	gdac.broadinstitute.org_MESO-TP.CopyNumber_Gistic2.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Arm_2014041600	D38V1.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Arm.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	broad_values_by_arm.txt	gdac.broadinstitute.org_MESO-TP.CopyNumber_Gistic2.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Arm_2014041600	D37V4.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Arm.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	broad_values_by_arm.txt	gdac.broadinstitute.org_MESO-TP.CopyNumber_Gistic2.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Arm_2014041600	D52V2.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Arm.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	broad_values_by_arm.txt	gdac.broadinstitute.org_MESO-TP.CopyNumber_Gistic2.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Arm_2014041600	D52V1.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Arm.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	broad_values_by_arm.txt	gdac.broadinstitute.org_MESO-TP.CopyNumber_Gistic2.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Arm_2014041600	nozzle.html	report	Level_4	html	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Arm.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	broad_values_by_arm.txt	gdac.broadinstitute.org_MESO-TP.CopyNumber_Gistic2.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Arm_2014041600	nozzle.RData	report	Level_4	RData	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Arm.Level_4.2014041600.0.0	yes
