
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/13/Correlate_Genomic_Events.R")
> result <- main("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/13/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-tTRUE", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/MESO-TP/8282833/transformed.cor.cli.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/MESO-TP/8282703/MESO-TP.transferedmergedcluster.txt", "-fF=", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=0.05", "-cQ=0.25", "-MF=ONLYSIG", "-oT=MESO-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=MESO-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/MESO-TP/8282703/MESO-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/MESO-TP/8282833/transformed.cor.cli.txt"

nPatients in clinical file=37, in cluster file=37, common to both=37
[1] 23 37
[1] "AMP PEAK 1(12P11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 1(12P11.21) MUTATED AMP PEAK 1(12P11.21) WILD-TYPE 
                            10                             27 
  AMP PEAK 1(12P11.21) MUTATED AMP PEAK 1(12P11.21) WILD-TYPE 
                            10                             27 
[1] "AMP PEAK 2(17Q24.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 2(17Q24.3) MUTATED AMP PEAK 2(17Q24.3) WILD-TYPE 
                           12                            25 
  AMP PEAK 2(17Q24.3) MUTATED AMP PEAK 2(17Q24.3) WILD-TYPE 
                           12                            25 
[1] "AMP PEAK 3(19Q13.43) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 3(19Q13.43) MUTATED AMP PEAK 3(19Q13.43) WILD-TYPE 
                             4                             33 
  AMP PEAK 3(19Q13.43) MUTATED AMP PEAK 3(19Q13.43) WILD-TYPE 
                             4                             33 
[1] "AMP PEAK 4(20P12.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 4(20P12.1) MUTATED AMP PEAK 4(20P12.1) WILD-TYPE 
                            4                            33 
  AMP PEAK 4(20P12.1) MUTATED AMP PEAK 4(20P12.1) WILD-TYPE 
                            4                            33 
[1] "DEL PEAK  1(1P36.23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE 
                            17                             20 
  DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE 
                            17                             20 
[1] "DEL PEAK  2(1P22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE 
                           17                            20 
  DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE 
                           17                            20 
[1] "DEL PEAK  3(2Q35) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(2Q35) MUTATED DEL PEAK  3(2Q35) WILD-TYPE 
                          8                          29 
  DEL PEAK  3(2Q35) MUTATED DEL PEAK  3(2Q35) WILD-TYPE 
                          8                          29 
[1] "DEL PEAK  4(3P21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(3P21.1) MUTATED DEL PEAK  4(3P21.1) WILD-TYPE 
                           21                            16 
  DEL PEAK  4(3P21.1) MUTATED DEL PEAK  4(3P21.1) WILD-TYPE 
                           21                            16 
[1] "DEL PEAK  5(4Q26) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(4Q26) MUTATED DEL PEAK  5(4Q26) WILD-TYPE 
                         18                          19 
  DEL PEAK  5(4Q26) MUTATED DEL PEAK  5(4Q26) WILD-TYPE 
                         18                          19 
[1] "DEL PEAK  6(5Q23.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(5Q23.2) MUTATED DEL PEAK  6(5Q23.2) WILD-TYPE 
                            7                            30 
  DEL PEAK  6(5Q23.2) MUTATED DEL PEAK  6(5Q23.2) WILD-TYPE 
                            7                            30 
[1] "DEL PEAK  7(6Q22.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(6Q22.31) MUTATED DEL PEAK  7(6Q22.31) WILD-TYPE 
                            20                             17 
  DEL PEAK  7(6Q22.31) MUTATED DEL PEAK  7(6Q22.31) WILD-TYPE 
                            20                             17 
[1] "DEL PEAK  8(9P21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(9P21.3) MUTATED DEL PEAK  8(9P21.3) WILD-TYPE 
                           23                            14 
  DEL PEAK  8(9P21.3) MUTATED DEL PEAK  8(9P21.3) WILD-TYPE 
                           23                            14 
[1] "DEL PEAK  9(10P15.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(10P15.1) MUTATED DEL PEAK  9(10P15.1) WILD-TYPE 
                            13                             24 
  DEL PEAK  9(10P15.1) MUTATED DEL PEAK  9(10P15.1) WILD-TYPE 
                            13                             24 
[1] "DEL PEAK 10(10Q22.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(10Q22.3) MUTATED DEL PEAK 10(10Q22.3) WILD-TYPE 
                             7                             30 
  DEL PEAK 10(10Q22.3) MUTATED DEL PEAK 10(10Q22.3) WILD-TYPE 
                             7                             30 
[1] "DEL PEAK 11(10Q24.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(10Q24.1) MUTATED DEL PEAK 11(10Q24.1) WILD-TYPE 
                            13                             24 
  DEL PEAK 11(10Q24.1) MUTATED DEL PEAK 11(10Q24.1) WILD-TYPE 
                            13                             24 
[1] "DEL PEAK 12(13Q13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(13Q13.3) MUTATED DEL PEAK 12(13Q13.3) WILD-TYPE 
                            21                             16 
  DEL PEAK 12(13Q13.3) MUTATED DEL PEAK 12(13Q13.3) WILD-TYPE 
                            21                             16 
[1] "DEL PEAK 13(14Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(14Q11.2) MUTATED DEL PEAK 13(14Q11.2) WILD-TYPE 
                            16                             21 
  DEL PEAK 13(14Q11.2) MUTATED DEL PEAK 13(14Q11.2) WILD-TYPE 
                            16                             21 
[1] "DEL PEAK 14(14Q32.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(14Q32.31) MUTATED DEL PEAK 14(14Q32.31) WILD-TYPE 
                             19                              18 
  DEL PEAK 14(14Q32.31) MUTATED DEL PEAK 14(14Q32.31) WILD-TYPE 
                             19                              18 
[1] "DEL PEAK 15(15Q15.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(15Q15.1) MUTATED DEL PEAK 15(15Q15.1) WILD-TYPE 
                            14                             23 
  DEL PEAK 15(15Q15.1) MUTATED DEL PEAK 15(15Q15.1) WILD-TYPE 
                            14                             23 
[1] "DEL PEAK 16(16P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(16P13.3) MUTATED DEL PEAK 16(16P13.3) WILD-TYPE 
                             3                             34 
  DEL PEAK 16(16P13.3) MUTATED DEL PEAK 16(16P13.3) WILD-TYPE 
                             3                             34 
[1] "DEL PEAK 17(16Q21) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(16Q21) MUTATED DEL PEAK 17(16Q21) WILD-TYPE 
                           9                           28 
  DEL PEAK 17(16Q21) MUTATED DEL PEAK 17(16Q21) WILD-TYPE 
                           9                           28 
[1] "DEL PEAK 18(16Q24.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(16Q24.1) MUTATED DEL PEAK 18(16Q24.1) WILD-TYPE 
                            11                             26 
  DEL PEAK 18(16Q24.1) MUTATED DEL PEAK 18(16Q24.1) WILD-TYPE 
                            11                             26 
[1] "DEL PEAK 19(22Q12.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(22Q12.2) MUTATED DEL PEAK 19(22Q12.2) WILD-TYPE 
                            29                              8 
  DEL PEAK 19(22Q12.2) MUTATED DEL PEAK 19(22Q12.2) WILD-TYPE 
                            29                              8 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection="
[1] "CN_CNMF"                     "METHLYATION_CNMF"           
[3] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[5] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 6 rows and 37 columns.

Variable 1:'CN_CNMF':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'MIRSEQ_CNMF':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MIRSEQ_MATURE_CNMF':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
[1] "CN_CNMF"                     "METHLYATION_CNMF"           
[3] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[5] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 37 columns, 0 survival variables, and 6 non-survival variables.
CN_CNMF, nv=2, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=2, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=2, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=2, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=2, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK 1(12P11.21) MUTATION ANALYSIS
D1V1, binary
                                cls
clus                              0  1
  AMP PEAK 1(12P11.21) MUTATED    8  2
  AMP PEAK 1(12P11.21) WILD-TYPE  8 19
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 1(12P11.21) MUTATED      8    2
  AMP PEAK 1(12P11.21) WILD-TYPE    8   19
        clus
vv       AMP PEAK 1(12P11.21) MUTATED AMP PEAK 1(12P11.21) WILD-TYPE
  CLUS_1                            8                              8
  CLUS_2                            2                             19
D1V2, binary
                                cls
clus                              0  1
  AMP PEAK 1(12P11.21) MUTATED    4  6
  AMP PEAK 1(12P11.21) WILD-TYPE 16 11
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 1(12P11.21) MUTATED      4    6
  AMP PEAK 1(12P11.21) WILD-TYPE   16   11
        clus
vv       AMP PEAK 1(12P11.21) MUTATED AMP PEAK 1(12P11.21) WILD-TYPE
  CLUS_1                            4                             16
  CLUS_2                            6                             11
D1V3, binary
                                cls
clus                              0  1
  AMP PEAK 1(12P11.21) MUTATED    4  3
  AMP PEAK 1(12P11.21) WILD-TYPE 12  7
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 1(12P11.21) MUTATED      4    3
  AMP PEAK 1(12P11.21) WILD-TYPE   12    7
        clus
vv       AMP PEAK 1(12P11.21) MUTATED AMP PEAK 1(12P11.21) WILD-TYPE
  CLUS_1                            4                             12
  CLUS_2                            3                              7
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 1(12P11.21) MUTATED        4      3      0
  AMP PEAK 1(12P11.21) WILD-TYPE      5      9      5
D1V4, multiclass
        clus
vv       AMP PEAK 1(12P11.21) MUTATED AMP PEAK 1(12P11.21) WILD-TYPE
  CLUS_1                            4                              5
  CLUS_2                            3                              9
  CLUS_3                            0                              5
D1V5, binary
                                cls
clus                              0  1
  AMP PEAK 1(12P11.21) MUTATED    3  4
  AMP PEAK 1(12P11.21) WILD-TYPE 11  8
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 1(12P11.21) MUTATED      3    4
  AMP PEAK 1(12P11.21) WILD-TYPE   11    8
        clus
vv       AMP PEAK 1(12P11.21) MUTATED AMP PEAK 1(12P11.21) WILD-TYPE
  CLUS_1                            3                             11
  CLUS_2                            4                              8
D1V6, binary
                                cls
clus                              0  1
  AMP PEAK 1(12P11.21) MUTATED    3  4
  AMP PEAK 1(12P11.21) WILD-TYPE  8 11
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 1(12P11.21) MUTATED      3    4
  AMP PEAK 1(12P11.21) WILD-TYPE    8   11
        clus
vv       AMP PEAK 1(12P11.21) MUTATED AMP PEAK 1(12P11.21) WILD-TYPE
  CLUS_1                            3                              8
  CLUS_2                            4                             11

Clustering(2) Variable = AMP PEAK 2(17Q24.3) MUTATION ANALYSIS
D2V1, binary
                               cls
clus                             0  1
  AMP PEAK 2(17Q24.3) MUTATED    8  4
  AMP PEAK 2(17Q24.3) WILD-TYPE  8 17
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 2(17Q24.3) MUTATED      8    4
  AMP PEAK 2(17Q24.3) WILD-TYPE    8   17
        clus
vv       AMP PEAK 2(17Q24.3) MUTATED AMP PEAK 2(17Q24.3) WILD-TYPE
  CLUS_1                           8                             8
  CLUS_2                           4                            17
D2V2, binary
                               cls
clus                             0  1
  AMP PEAK 2(17Q24.3) MUTATED    7  5
  AMP PEAK 2(17Q24.3) WILD-TYPE 13 12
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 2(17Q24.3) MUTATED      7    5
  AMP PEAK 2(17Q24.3) WILD-TYPE   13   12
        clus
vv       AMP PEAK 2(17Q24.3) MUTATED AMP PEAK 2(17Q24.3) WILD-TYPE
  CLUS_1                           7                            13
  CLUS_2                           5                            12
D2V3, binary
                               cls
clus                             0  1
  AMP PEAK 2(17Q24.3) MUTATED    4  3
  AMP PEAK 2(17Q24.3) WILD-TYPE 12  7
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 2(17Q24.3) MUTATED      4    3
  AMP PEAK 2(17Q24.3) WILD-TYPE   12    7
        clus
vv       AMP PEAK 2(17Q24.3) MUTATED AMP PEAK 2(17Q24.3) WILD-TYPE
  CLUS_1                           4                            12
  CLUS_2                           3                             7
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 2(17Q24.3) MUTATED        3      4      0
  AMP PEAK 2(17Q24.3) WILD-TYPE      6      8      5
D2V4, multiclass
        clus
vv       AMP PEAK 2(17Q24.3) MUTATED AMP PEAK 2(17Q24.3) WILD-TYPE
  CLUS_1                           3                             6
  CLUS_2                           4                             8
  CLUS_3                           0                             5
D2V5, binary
                               cls
clus                             0  1
  AMP PEAK 2(17Q24.3) MUTATED    3  4
  AMP PEAK 2(17Q24.3) WILD-TYPE 11  8
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 2(17Q24.3) MUTATED      3    4
  AMP PEAK 2(17Q24.3) WILD-TYPE   11    8
        clus
vv       AMP PEAK 2(17Q24.3) MUTATED AMP PEAK 2(17Q24.3) WILD-TYPE
  CLUS_1                           3                            11
  CLUS_2                           4                             8
D2V6, binary
                               cls
clus                             0  1
  AMP PEAK 2(17Q24.3) MUTATED    4  3
  AMP PEAK 2(17Q24.3) WILD-TYPE  7 12
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 2(17Q24.3) MUTATED      4    3
  AMP PEAK 2(17Q24.3) WILD-TYPE    7   12
        clus
vv       AMP PEAK 2(17Q24.3) MUTATED AMP PEAK 2(17Q24.3) WILD-TYPE
  CLUS_1                           4                             7
  CLUS_2                           3                            12

Clustering(3) Variable = AMP PEAK 3(19Q13.43) MUTATION ANALYSIS
D3V1, binary
                                cls
clus                              0  1
  AMP PEAK 3(19Q13.43) MUTATED    3  1
  AMP PEAK 3(19Q13.43) WILD-TYPE 13 20
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 3(19Q13.43) MUTATED      3    1
  AMP PEAK 3(19Q13.43) WILD-TYPE   13   20
        clus
vv       AMP PEAK 3(19Q13.43) MUTATED AMP PEAK 3(19Q13.43) WILD-TYPE
  CLUS_1                            3                             13
  CLUS_2                            1                             20
D3V2, binary
                                cls
clus                              0  1
  AMP PEAK 3(19Q13.43) MUTATED    2  2
  AMP PEAK 3(19Q13.43) WILD-TYPE 18 15
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 3(19Q13.43) MUTATED      2    2
  AMP PEAK 3(19Q13.43) WILD-TYPE   18   15
        clus
vv       AMP PEAK 3(19Q13.43) MUTATED AMP PEAK 3(19Q13.43) WILD-TYPE
  CLUS_1                            2                             18
  CLUS_2                            2                             15
D3V3, binary
                                cls
clus                              0  1
  AMP PEAK 3(19Q13.43) MUTATED    2  1
  AMP PEAK 3(19Q13.43) WILD-TYPE 14  9
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 3(19Q13.43) MUTATED      2    1
  AMP PEAK 3(19Q13.43) WILD-TYPE   14    9
        clus
vv       AMP PEAK 3(19Q13.43) MUTATED AMP PEAK 3(19Q13.43) WILD-TYPE
  CLUS_1                            2                             14
  CLUS_2                            1                              9
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 3(19Q13.43) MUTATED        0      2      1
  AMP PEAK 3(19Q13.43) WILD-TYPE      9     10      4
D3V4, multiclass
        clus
vv       AMP PEAK 3(19Q13.43) MUTATED AMP PEAK 3(19Q13.43) WILD-TYPE
  CLUS_1                            0                              9
  CLUS_2                            2                             10
  CLUS_3                            1                              4
D3V5, binary
                                cls
clus                              0  1
  AMP PEAK 3(19Q13.43) MUTATED    2  1
  AMP PEAK 3(19Q13.43) WILD-TYPE 12 11
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 3(19Q13.43) MUTATED      2    1
  AMP PEAK 3(19Q13.43) WILD-TYPE   12   11
        clus
vv       AMP PEAK 3(19Q13.43) MUTATED AMP PEAK 3(19Q13.43) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            1                             11
D3V6, binary
                                cls
clus                              0  1
  AMP PEAK 3(19Q13.43) MUTATED    1  2
  AMP PEAK 3(19Q13.43) WILD-TYPE 10 13
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 3(19Q13.43) MUTATED      1    2
  AMP PEAK 3(19Q13.43) WILD-TYPE   10   13
        clus
vv       AMP PEAK 3(19Q13.43) MUTATED AMP PEAK 3(19Q13.43) WILD-TYPE
  CLUS_1                            1                             10
  CLUS_2                            2                             13

Clustering(4) Variable = AMP PEAK 4(20P12.1) MUTATION ANALYSIS
D4V1, binary
                               cls
clus                             0  1
  AMP PEAK 4(20P12.1) MUTATED    1  3
  AMP PEAK 4(20P12.1) WILD-TYPE 15 18
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 4(20P12.1) MUTATED      1    3
  AMP PEAK 4(20P12.1) WILD-TYPE   15   18
        clus
vv       AMP PEAK 4(20P12.1) MUTATED AMP PEAK 4(20P12.1) WILD-TYPE
  CLUS_1                           1                            15
  CLUS_2                           3                            18
D4V2, binary
                               cls
clus                             0  1
  AMP PEAK 4(20P12.1) MUTATED    2  2
  AMP PEAK 4(20P12.1) WILD-TYPE 18 15
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 4(20P12.1) MUTATED      2    2
  AMP PEAK 4(20P12.1) WILD-TYPE   18   15
        clus
vv       AMP PEAK 4(20P12.1) MUTATED AMP PEAK 4(20P12.1) WILD-TYPE
  CLUS_1                           2                            18
  CLUS_2                           2                            15
D4V3, binary
                               cls
clus                             0  1
  AMP PEAK 4(20P12.1) MUTATED    1  1
  AMP PEAK 4(20P12.1) WILD-TYPE 15  9
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 4(20P12.1) MUTATED      1    1
  AMP PEAK 4(20P12.1) WILD-TYPE   15    9
        clus
vv       AMP PEAK 4(20P12.1) MUTATED AMP PEAK 4(20P12.1) WILD-TYPE
  CLUS_1                           1                            15
  CLUS_2                           1                             9
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 4(20P12.1) MUTATED        2      0      0
  AMP PEAK 4(20P12.1) WILD-TYPE      7     12      5
D4V4, multiclass
[1] "Remove cluster labels:"      "AMP PEAK 4(20P12.1) MUTATED"
clus
  AMP PEAK 4(20P12.1) MUTATED AMP PEAK 4(20P12.1) WILD-TYPE 
                            2                            24 
                   TCGA-LK-A4NW                    TCGA-LK-A4O2 
"AMP PEAK 4(20P12.1) WILD-TYPE" "AMP PEAK 4(20P12.1) WILD-TYPE" 
                   TCGA-LK-A4O4                    TCGA-LK-A4O5 
"AMP PEAK 4(20P12.1) WILD-TYPE" "AMP PEAK 4(20P12.1) WILD-TYPE" 
                   TCGA-LK-A4O6                    TCGA-LK-A4O7 
"AMP PEAK 4(20P12.1) WILD-TYPE" "AMP PEAK 4(20P12.1) WILD-TYPE" 
                   TCGA-MQ-A4LI                    TCGA-MQ-A4LJ 
"AMP PEAK 4(20P12.1) WILD-TYPE" "AMP PEAK 4(20P12.1) WILD-TYPE" 
                   TCGA-MQ-A4LM                    TCGA-MQ-A4LP 
"AMP PEAK 4(20P12.1) WILD-TYPE" "AMP PEAK 4(20P12.1) WILD-TYPE" 
                   TCGA-MQ-A4LV                    TCGA-MQ-A6BR 
"AMP PEAK 4(20P12.1) WILD-TYPE" "AMP PEAK 4(20P12.1) WILD-TYPE" 
                   TCGA-MQ-A6BS                    TCGA-NQ-A638 
"AMP PEAK 4(20P12.1) WILD-TYPE" "AMP PEAK 4(20P12.1) WILD-TYPE" 
                   TCGA-SC-A6LM                    TCGA-SC-A6LN 
"AMP PEAK 4(20P12.1) WILD-TYPE" "AMP PEAK 4(20P12.1) WILD-TYPE" 
                   TCGA-SC-A6LR                    TCGA-SH-A7BC 
"AMP PEAK 4(20P12.1) WILD-TYPE" "AMP PEAK 4(20P12.1) WILD-TYPE" 
                   TCGA-SH-A7BD                    TCGA-SH-A7BH 
"AMP PEAK 4(20P12.1) WILD-TYPE" "AMP PEAK 4(20P12.1) WILD-TYPE" 
                   TCGA-TS-A7OY                    TCGA-TS-A7P0 
"AMP PEAK 4(20P12.1) WILD-TYPE" "AMP PEAK 4(20P12.1) WILD-TYPE" 
                   TCGA-TS-A7P8                    TCGA-TS-A7PB 
"AMP PEAK 4(20P12.1) WILD-TYPE" "AMP PEAK 4(20P12.1) WILD-TYPE" 
D4V5, binary
                               cls
clus                             0  1
  AMP PEAK 4(20P12.1) MUTATED    1  1
  AMP PEAK 4(20P12.1) WILD-TYPE 13 11
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 4(20P12.1) MUTATED      1    1
  AMP PEAK 4(20P12.1) WILD-TYPE   13   11
        clus
vv       AMP PEAK 4(20P12.1) MUTATED AMP PEAK 4(20P12.1) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           1                            11
D4V6, binary
                               cls
clus                             0  1
  AMP PEAK 4(20P12.1) MUTATED    1  1
  AMP PEAK 4(20P12.1) WILD-TYPE 10 14
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 4(20P12.1) MUTATED      1    1
  AMP PEAK 4(20P12.1) WILD-TYPE   10   14
        clus
vv       AMP PEAK 4(20P12.1) MUTATED AMP PEAK 4(20P12.1) WILD-TYPE
  CLUS_1                           1                            10
  CLUS_2                           1                            14

Clustering(5) Variable = DEL PEAK  1(1P36.23) MUTATION ANALYSIS
D5V1, binary
                                cls
clus                              0  1
  DEL PEAK  1(1P36.23) MUTATED   12  5
  DEL PEAK  1(1P36.23) WILD-TYPE  4 16
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.23) MUTATED     12    5
  DEL PEAK  1(1P36.23) WILD-TYPE    4   16
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                           12                              4
  CLUS_2                            5                             16
D5V2, binary
                                cls
clus                              0  1
  DEL PEAK  1(1P36.23) MUTATED    9  8
  DEL PEAK  1(1P36.23) WILD-TYPE 11  9
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.23) MUTATED      9    8
  DEL PEAK  1(1P36.23) WILD-TYPE   11    9
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                            9                             11
  CLUS_2                            8                              9
D5V3, binary
                                cls
clus                             0 1
  DEL PEAK  1(1P36.23) MUTATED   9 4
  DEL PEAK  1(1P36.23) WILD-TYPE 7 6
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.23) MUTATED      9    4
  DEL PEAK  1(1P36.23) WILD-TYPE    7    6
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                            9                              7
  CLUS_2                            4                              6
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.23) MUTATED        7      5      1
  DEL PEAK  1(1P36.23) WILD-TYPE      2      7      4
D5V4, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                            7                              2
  CLUS_2                            5                              7
  CLUS_3                            1                              4
D5V5, binary
                                cls
clus                             0 1
  DEL PEAK  1(1P36.23) MUTATED   8 5
  DEL PEAK  1(1P36.23) WILD-TYPE 6 7
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.23) MUTATED      8    5
  DEL PEAK  1(1P36.23) WILD-TYPE    6    7
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                            8                              6
  CLUS_2                            5                              7
D5V6, binary
                                cls
clus                             0 1
  DEL PEAK  1(1P36.23) MUTATED   4 9
  DEL PEAK  1(1P36.23) WILD-TYPE 7 6
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.23) MUTATED      4    9
  DEL PEAK  1(1P36.23) WILD-TYPE    7    6
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                            4                              7
  CLUS_2                            9                              6

Clustering(6) Variable = DEL PEAK  2(1P22.1) MUTATION ANALYSIS
D6V1, binary
                               cls
clus                             0  1
  DEL PEAK  2(1P22.1) MUTATED   10  7
  DEL PEAK  2(1P22.1) WILD-TYPE  6 14
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  2(1P22.1) MUTATED     10    7
  DEL PEAK  2(1P22.1) WILD-TYPE    6   14
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                          10                             6
  CLUS_2                           7                            14
D6V2, binary
                               cls
clus                             0  1
  DEL PEAK  2(1P22.1) MUTATED   12  5
  DEL PEAK  2(1P22.1) WILD-TYPE  8 12
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  2(1P22.1) MUTATED     12    5
  DEL PEAK  2(1P22.1) WILD-TYPE    8   12
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                          12                             8
  CLUS_2                           5                            12
D6V3, binary
                               cls
clus                            0 1
  DEL PEAK  2(1P22.1) MUTATED   7 5
  DEL PEAK  2(1P22.1) WILD-TYPE 9 5
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  2(1P22.1) MUTATED      7    5
  DEL PEAK  2(1P22.1) WILD-TYPE    9    5
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                           7                             9
  CLUS_2                           5                             5
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P22.1) MUTATED        3      4      5
  DEL PEAK  2(1P22.1) WILD-TYPE      6      8      0
D6V4, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                           3                             6
  CLUS_2                           4                             8
  CLUS_3                           5                             0
D6V5, binary
                               cls
clus                            0 1
  DEL PEAK  2(1P22.1) MUTATED   6 6
  DEL PEAK  2(1P22.1) WILD-TYPE 8 6
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  2(1P22.1) MUTATED      6    6
  DEL PEAK  2(1P22.1) WILD-TYPE    8    6
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                           6                             8
  CLUS_2                           6                             6
D6V6, binary
                               cls
clus                            0 1
  DEL PEAK  2(1P22.1) MUTATED   6 6
  DEL PEAK  2(1P22.1) WILD-TYPE 5 9
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  2(1P22.1) MUTATED      6    6
  DEL PEAK  2(1P22.1) WILD-TYPE    5    9
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                           6                             5
  CLUS_2                           6                             9

Clustering(7) Variable = DEL PEAK  3(2Q35) MUTATION ANALYSIS
D7V1, binary
                             cls
clus                           0  1
  DEL PEAK  3(2Q35) MUTATED    6  2
  DEL PEAK  3(2Q35) WILD-TYPE 10 19
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  3(2Q35) MUTATED      6    2
  DEL PEAK  3(2Q35) WILD-TYPE   10   19
        clus
vv       DEL PEAK  3(2Q35) MUTATED DEL PEAK  3(2Q35) WILD-TYPE
  CLUS_1                         6                          10
  CLUS_2                         2                          19
D7V2, binary
                             cls
clus                           0  1
  DEL PEAK  3(2Q35) MUTATED    3  5
  DEL PEAK  3(2Q35) WILD-TYPE 17 12
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  3(2Q35) MUTATED      3    5
  DEL PEAK  3(2Q35) WILD-TYPE   17   12
        clus
vv       DEL PEAK  3(2Q35) MUTATED DEL PEAK  3(2Q35) WILD-TYPE
  CLUS_1                         3                          17
  CLUS_2                         5                          12
D7V3, binary
                             cls
clus                           0  1
  DEL PEAK  3(2Q35) MUTATED    3  1
  DEL PEAK  3(2Q35) WILD-TYPE 13  9
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  3(2Q35) MUTATED      3    1
  DEL PEAK  3(2Q35) WILD-TYPE   13    9
        clus
vv       DEL PEAK  3(2Q35) MUTATED DEL PEAK  3(2Q35) WILD-TYPE
  CLUS_1                         3                          13
  CLUS_2                         1                           9
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q35) MUTATED        2      2      0
  DEL PEAK  3(2Q35) WILD-TYPE      7     10      5
D7V4, multiclass
        clus
vv       DEL PEAK  3(2Q35) MUTATED DEL PEAK  3(2Q35) WILD-TYPE
  CLUS_1                         2                           7
  CLUS_2                         2                          10
  CLUS_3                         0                           5
D7V5, binary
                             cls
clus                           0  1
  DEL PEAK  3(2Q35) MUTATED    3  1
  DEL PEAK  3(2Q35) WILD-TYPE 11 11
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  3(2Q35) MUTATED      3    1
  DEL PEAK  3(2Q35) WILD-TYPE   11   11
        clus
vv       DEL PEAK  3(2Q35) MUTATED DEL PEAK  3(2Q35) WILD-TYPE
  CLUS_1                         3                          11
  CLUS_2                         1                          11
D7V6, binary
                             cls
clus                           0  1
  DEL PEAK  3(2Q35) MUTATED    0  4
  DEL PEAK  3(2Q35) WILD-TYPE 11 11
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  3(2Q35) MUTATED      0    4
  DEL PEAK  3(2Q35) WILD-TYPE   11   11
        clus
vv       DEL PEAK  3(2Q35) MUTATED DEL PEAK  3(2Q35) WILD-TYPE
  CLUS_1                         0                          11
  CLUS_2                         4                          11

Clustering(8) Variable = DEL PEAK  4(3P21.1) MUTATION ANALYSIS
D8V1, binary
                               cls
clus                             0  1
  DEL PEAK  4(3P21.1) MUTATED    8 13
  DEL PEAK  4(3P21.1) WILD-TYPE  8  8
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  4(3P21.1) MUTATED      8   13
  DEL PEAK  4(3P21.1) WILD-TYPE    8    8
        clus
vv       DEL PEAK  4(3P21.1) MUTATED DEL PEAK  4(3P21.1) WILD-TYPE
  CLUS_1                           8                             8
  CLUS_2                          13                             8
D8V2, binary
                               cls
clus                             0  1
  DEL PEAK  4(3P21.1) MUTATED   12  9
  DEL PEAK  4(3P21.1) WILD-TYPE  8  8
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  4(3P21.1) MUTATED     12    9
  DEL PEAK  4(3P21.1) WILD-TYPE    8    8
        clus
vv       DEL PEAK  4(3P21.1) MUTATED DEL PEAK  4(3P21.1) WILD-TYPE
  CLUS_1                          12                             8
  CLUS_2                           9                             8
D8V3, binary
                               cls
clus                             0  1
  DEL PEAK  4(3P21.1) MUTATED    5 10
  DEL PEAK  4(3P21.1) WILD-TYPE 11  0
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  4(3P21.1) MUTATED      5   10
  DEL PEAK  4(3P21.1) WILD-TYPE   11    0
        clus
vv       DEL PEAK  4(3P21.1) MUTATED DEL PEAK  4(3P21.1) WILD-TYPE
  CLUS_1                           5                            11
  CLUS_2                          10                             0
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(3P21.1) MUTATED        8      3      4
  DEL PEAK  4(3P21.1) WILD-TYPE      1      9      1
D8V4, multiclass
        clus
vv       DEL PEAK  4(3P21.1) MUTATED DEL PEAK  4(3P21.1) WILD-TYPE
  CLUS_1                           8                             1
  CLUS_2                           3                             9
  CLUS_3                           4                             1
D8V5, binary
                               cls
clus                             0  1
  DEL PEAK  4(3P21.1) MUTATED    4 11
  DEL PEAK  4(3P21.1) WILD-TYPE 10  1
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  4(3P21.1) MUTATED      4   11
  DEL PEAK  4(3P21.1) WILD-TYPE   10    1
        clus
vv       DEL PEAK  4(3P21.1) MUTATED DEL PEAK  4(3P21.1) WILD-TYPE
  CLUS_1                           4                            10
  CLUS_2                          11                             1
D8V6, binary
                               cls
clus                             0  1
  DEL PEAK  4(3P21.1) MUTATED   10  5
  DEL PEAK  4(3P21.1) WILD-TYPE  1 10
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  4(3P21.1) MUTATED     10    5
  DEL PEAK  4(3P21.1) WILD-TYPE    1   10
        clus
vv       DEL PEAK  4(3P21.1) MUTATED DEL PEAK  4(3P21.1) WILD-TYPE
  CLUS_1                          10                             1
  CLUS_2                           5                            10

Clustering(9) Variable = DEL PEAK  5(4Q26) MUTATION ANALYSIS
D9V1, binary
                             cls
clus                           0  1
  DEL PEAK  5(4Q26) MUTATED   12  6
  DEL PEAK  5(4Q26) WILD-TYPE  4 15
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  5(4Q26) MUTATED     12    6
  DEL PEAK  5(4Q26) WILD-TYPE    4   15
        clus
vv       DEL PEAK  5(4Q26) MUTATED DEL PEAK  5(4Q26) WILD-TYPE
  CLUS_1                        12                           4
  CLUS_2                         6                          15
D9V2, binary
                             cls
clus                           0  1
  DEL PEAK  5(4Q26) MUTATED    7 11
  DEL PEAK  5(4Q26) WILD-TYPE 13  6
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  5(4Q26) MUTATED      7   11
  DEL PEAK  5(4Q26) WILD-TYPE   13    6
        clus
vv       DEL PEAK  5(4Q26) MUTATED DEL PEAK  5(4Q26) WILD-TYPE
  CLUS_1                         7                          13
  CLUS_2                        11                           6
D9V3, binary
                             cls
clus                           0  1
  DEL PEAK  5(4Q26) MUTATED   10  6
  DEL PEAK  5(4Q26) WILD-TYPE  6  4
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  5(4Q26) MUTATED     10    6
  DEL PEAK  5(4Q26) WILD-TYPE    6    4
        clus
vv       DEL PEAK  5(4Q26) MUTATED DEL PEAK  5(4Q26) WILD-TYPE
  CLUS_1                        10                           6
  CLUS_2                         6                           4
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(4Q26) MUTATED        8      6      2
  DEL PEAK  5(4Q26) WILD-TYPE      1      6      3
D9V4, multiclass
        clus
vv       DEL PEAK  5(4Q26) MUTATED DEL PEAK  5(4Q26) WILD-TYPE
  CLUS_1                         8                           1
  CLUS_2                         6                           6
  CLUS_3                         2                           3
D9V5, binary
                             cls
clus                          0 1
  DEL PEAK  5(4Q26) MUTATED   9 7
  DEL PEAK  5(4Q26) WILD-TYPE 5 5
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  5(4Q26) MUTATED      9    7
  DEL PEAK  5(4Q26) WILD-TYPE    5    5
        clus
vv       DEL PEAK  5(4Q26) MUTATED DEL PEAK  5(4Q26) WILD-TYPE
  CLUS_1                         9                           5
  CLUS_2                         7                           5
D9V6, binary
                             cls
clus                           0  1
  DEL PEAK  5(4Q26) MUTATED    6 10
  DEL PEAK  5(4Q26) WILD-TYPE  5  5
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  5(4Q26) MUTATED      6   10
  DEL PEAK  5(4Q26) WILD-TYPE    5    5
        clus
vv       DEL PEAK  5(4Q26) MUTATED DEL PEAK  5(4Q26) WILD-TYPE
  CLUS_1                         6                           5
  CLUS_2                        10                           5

Clustering(10) Variable = DEL PEAK  6(5Q23.2) MUTATION ANALYSIS
D10V1, binary
                               cls
clus                             0  1
  DEL PEAK  6(5Q23.2) MUTATED    5  2
  DEL PEAK  6(5Q23.2) WILD-TYPE 11 19
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  6(5Q23.2) MUTATED      5    2
  DEL PEAK  6(5Q23.2) WILD-TYPE   11   19
        clus
vv       DEL PEAK  6(5Q23.2) MUTATED DEL PEAK  6(5Q23.2) WILD-TYPE
  CLUS_1                           5                            11
  CLUS_2                           2                            19
D10V2, binary
                               cls
clus                             0  1
  DEL PEAK  6(5Q23.2) MUTATED    5  2
  DEL PEAK  6(5Q23.2) WILD-TYPE 15 15
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  6(5Q23.2) MUTATED      5    2
  DEL PEAK  6(5Q23.2) WILD-TYPE   15   15
        clus
vv       DEL PEAK  6(5Q23.2) MUTATED DEL PEAK  6(5Q23.2) WILD-TYPE
  CLUS_1                           5                            15
  CLUS_2                           2                            15
D10V3, binary
                               cls
clus                             0  1
  DEL PEAK  6(5Q23.2) MUTATED    4  2
  DEL PEAK  6(5Q23.2) WILD-TYPE 12  8
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  6(5Q23.2) MUTATED      4    2
  DEL PEAK  6(5Q23.2) WILD-TYPE   12    8
        clus
vv       DEL PEAK  6(5Q23.2) MUTATED DEL PEAK  6(5Q23.2) WILD-TYPE
  CLUS_1                           4                            12
  CLUS_2                           2                             8
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(5Q23.2) MUTATED        1      3      2
  DEL PEAK  6(5Q23.2) WILD-TYPE      8      9      3
D10V4, multiclass
        clus
vv       DEL PEAK  6(5Q23.2) MUTATED DEL PEAK  6(5Q23.2) WILD-TYPE
  CLUS_1                           1                             8
  CLUS_2                           3                             9
  CLUS_3                           2                             3
D10V5, binary
                               cls
clus                             0  1
  DEL PEAK  6(5Q23.2) MUTATED    3  3
  DEL PEAK  6(5Q23.2) WILD-TYPE 11  9
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  6(5Q23.2) MUTATED      3    3
  DEL PEAK  6(5Q23.2) WILD-TYPE   11    9
        clus
vv       DEL PEAK  6(5Q23.2) MUTATED DEL PEAK  6(5Q23.2) WILD-TYPE
  CLUS_1                           3                            11
  CLUS_2                           3                             9
D10V6, binary
                               cls
clus                             0  1
  DEL PEAK  6(5Q23.2) MUTATED    3  3
  DEL PEAK  6(5Q23.2) WILD-TYPE  8 12
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  6(5Q23.2) MUTATED      3    3
  DEL PEAK  6(5Q23.2) WILD-TYPE    8   12
        clus
vv       DEL PEAK  6(5Q23.2) MUTATED DEL PEAK  6(5Q23.2) WILD-TYPE
  CLUS_1                           3                             8
  CLUS_2                           3                            12

Clustering(11) Variable = DEL PEAK  7(6Q22.31) MUTATION ANALYSIS
D11V1, binary
                                cls
clus                              0  1
  DEL PEAK  7(6Q22.31) MUTATED   10 10
  DEL PEAK  7(6Q22.31) WILD-TYPE  6 11
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  7(6Q22.31) MUTATED     10   10
  DEL PEAK  7(6Q22.31) WILD-TYPE    6   11
        clus
vv       DEL PEAK  7(6Q22.31) MUTATED DEL PEAK  7(6Q22.31) WILD-TYPE
  CLUS_1                           10                              6
  CLUS_2                           10                             11
D11V2, binary
                                cls
clus                              0  1
  DEL PEAK  7(6Q22.31) MUTATED   12  8
  DEL PEAK  7(6Q22.31) WILD-TYPE  8  9
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  7(6Q22.31) MUTATED     12    8
  DEL PEAK  7(6Q22.31) WILD-TYPE    8    9
        clus
vv       DEL PEAK  7(6Q22.31) MUTATED DEL PEAK  7(6Q22.31) WILD-TYPE
  CLUS_1                           12                              8
  CLUS_2                            8                              9
D11V3, binary
                                cls
clus                             0 1
  DEL PEAK  7(6Q22.31) MUTATED   7 5
  DEL PEAK  7(6Q22.31) WILD-TYPE 9 5
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  7(6Q22.31) MUTATED      7    5
  DEL PEAK  7(6Q22.31) WILD-TYPE    9    5
        clus
vv       DEL PEAK  7(6Q22.31) MUTATED DEL PEAK  7(6Q22.31) WILD-TYPE
  CLUS_1                            7                              9
  CLUS_2                            5                              5
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(6Q22.31) MUTATED        5      5      2
  DEL PEAK  7(6Q22.31) WILD-TYPE      4      7      3
D11V4, multiclass
        clus
vv       DEL PEAK  7(6Q22.31) MUTATED DEL PEAK  7(6Q22.31) WILD-TYPE
  CLUS_1                            5                              4
  CLUS_2                            5                              7
  CLUS_3                            2                              3
D11V5, binary
                                cls
clus                             0 1
  DEL PEAK  7(6Q22.31) MUTATED   6 6
  DEL PEAK  7(6Q22.31) WILD-TYPE 8 6
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  7(6Q22.31) MUTATED      6    6
  DEL PEAK  7(6Q22.31) WILD-TYPE    8    6
        clus
vv       DEL PEAK  7(6Q22.31) MUTATED DEL PEAK  7(6Q22.31) WILD-TYPE
  CLUS_1                            6                              8
  CLUS_2                            6                              6
D11V6, binary
                                cls
clus                             0 1
  DEL PEAK  7(6Q22.31) MUTATED   6 6
  DEL PEAK  7(6Q22.31) WILD-TYPE 5 9
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  7(6Q22.31) MUTATED      6    6
  DEL PEAK  7(6Q22.31) WILD-TYPE    5    9
        clus
vv       DEL PEAK  7(6Q22.31) MUTATED DEL PEAK  7(6Q22.31) WILD-TYPE
  CLUS_1                            6                              5
  CLUS_2                            6                              9

Clustering(12) Variable = DEL PEAK  8(9P21.3) MUTATION ANALYSIS
D12V1, binary
                               cls
clus                             0  1
  DEL PEAK  8(9P21.3) MUTATED   16  7
  DEL PEAK  8(9P21.3) WILD-TYPE  0 14
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  8(9P21.3) MUTATED     16    7
  DEL PEAK  8(9P21.3) WILD-TYPE    0   14
        clus
vv       DEL PEAK  8(9P21.3) MUTATED DEL PEAK  8(9P21.3) WILD-TYPE
  CLUS_1                          16                             0
  CLUS_2                           7                            14
D12V2, binary
                               cls
clus                             0  1
  DEL PEAK  8(9P21.3) MUTATED   12 11
  DEL PEAK  8(9P21.3) WILD-TYPE  8  6
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  8(9P21.3) MUTATED     12   11
  DEL PEAK  8(9P21.3) WILD-TYPE    8    6
        clus
vv       DEL PEAK  8(9P21.3) MUTATED DEL PEAK  8(9P21.3) WILD-TYPE
  CLUS_1                          12                             8
  CLUS_2                          11                             6
D12V3, binary
                               cls
clus                             0  1
  DEL PEAK  8(9P21.3) MUTATED   11  7
  DEL PEAK  8(9P21.3) WILD-TYPE  5  3
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  8(9P21.3) MUTATED     11    7
  DEL PEAK  8(9P21.3) WILD-TYPE    5    3
        clus
vv       DEL PEAK  8(9P21.3) MUTATED DEL PEAK  8(9P21.3) WILD-TYPE
  CLUS_1                          11                             5
  CLUS_2                           7                             3
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(9P21.3) MUTATED        8      7      3
  DEL PEAK  8(9P21.3) WILD-TYPE      1      5      2
D12V4, multiclass
        clus
vv       DEL PEAK  8(9P21.3) MUTATED DEL PEAK  8(9P21.3) WILD-TYPE
  CLUS_1                           8                             1
  CLUS_2                           7                             5
  CLUS_3                           3                             2
D12V5, binary
                               cls
clus                             0  1
  DEL PEAK  8(9P21.3) MUTATED   10  8
  DEL PEAK  8(9P21.3) WILD-TYPE  4  4
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  8(9P21.3) MUTATED     10    8
  DEL PEAK  8(9P21.3) WILD-TYPE    4    4
        clus
vv       DEL PEAK  8(9P21.3) MUTATED DEL PEAK  8(9P21.3) WILD-TYPE
  CLUS_1                          10                             4
  CLUS_2                           8                             4
D12V6, binary
                               cls
clus                             0  1
  DEL PEAK  8(9P21.3) MUTATED    7 11
  DEL PEAK  8(9P21.3) WILD-TYPE  4  4
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  8(9P21.3) MUTATED      7   11
  DEL PEAK  8(9P21.3) WILD-TYPE    4    4
        clus
vv       DEL PEAK  8(9P21.3) MUTATED DEL PEAK  8(9P21.3) WILD-TYPE
  CLUS_1                           7                             4
  CLUS_2                          11                             4

Clustering(13) Variable = DEL PEAK  9(10P15.1) MUTATION ANALYSIS
D13V1, binary
                                cls
clus                              0  1
  DEL PEAK  9(10P15.1) MUTATED    9  4
  DEL PEAK  9(10P15.1) WILD-TYPE  7 17
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  9(10P15.1) MUTATED      9    4
  DEL PEAK  9(10P15.1) WILD-TYPE    7   17
        clus
vv       DEL PEAK  9(10P15.1) MUTATED DEL PEAK  9(10P15.1) WILD-TYPE
  CLUS_1                            9                              7
  CLUS_2                            4                             17
D13V2, binary
                                cls
clus                              0  1
  DEL PEAK  9(10P15.1) MUTATED    6  7
  DEL PEAK  9(10P15.1) WILD-TYPE 14 10
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  9(10P15.1) MUTATED      6    7
  DEL PEAK  9(10P15.1) WILD-TYPE   14   10
        clus
vv       DEL PEAK  9(10P15.1) MUTATED DEL PEAK  9(10P15.1) WILD-TYPE
  CLUS_1                            6                             14
  CLUS_2                            7                             10
D13V3, binary
                                cls
clus                             0 1
  DEL PEAK  9(10P15.1) MUTATED   7 4
  DEL PEAK  9(10P15.1) WILD-TYPE 9 6
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  9(10P15.1) MUTATED      7    4
  DEL PEAK  9(10P15.1) WILD-TYPE    9    6
        clus
vv       DEL PEAK  9(10P15.1) MUTATED DEL PEAK  9(10P15.1) WILD-TYPE
  CLUS_1                            7                              9
  CLUS_2                            4                              6
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(10P15.1) MUTATED        4      6      1
  DEL PEAK  9(10P15.1) WILD-TYPE      5      6      4
D13V4, multiclass
        clus
vv       DEL PEAK  9(10P15.1) MUTATED DEL PEAK  9(10P15.1) WILD-TYPE
  CLUS_1                            4                              5
  CLUS_2                            6                              6
  CLUS_3                            1                              4
D13V5, binary
                                cls
clus                             0 1
  DEL PEAK  9(10P15.1) MUTATED   5 6
  DEL PEAK  9(10P15.1) WILD-TYPE 9 6
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  9(10P15.1) MUTATED      5    6
  DEL PEAK  9(10P15.1) WILD-TYPE    9    6
        clus
vv       DEL PEAK  9(10P15.1) MUTATED DEL PEAK  9(10P15.1) WILD-TYPE
  CLUS_1                            5                              9
  CLUS_2                            6                              6
D13V6, binary
                                cls
clus                              0  1
  DEL PEAK  9(10P15.1) MUTATED    6  5
  DEL PEAK  9(10P15.1) WILD-TYPE  5 10
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  9(10P15.1) MUTATED      6    5
  DEL PEAK  9(10P15.1) WILD-TYPE    5   10
        clus
vv       DEL PEAK  9(10P15.1) MUTATED DEL PEAK  9(10P15.1) WILD-TYPE
  CLUS_1                            6                              5
  CLUS_2                            5                             10

Clustering(14) Variable = DEL PEAK 10(10Q22.3) MUTATION ANALYSIS
D14V1, binary
                                cls
clus                              0  1
  DEL PEAK 10(10Q22.3) MUTATED    4  3
  DEL PEAK 10(10Q22.3) WILD-TYPE 12 18
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 10(10Q22.3) MUTATED      4    3
  DEL PEAK 10(10Q22.3) WILD-TYPE   12   18
        clus
vv       DEL PEAK 10(10Q22.3) MUTATED DEL PEAK 10(10Q22.3) WILD-TYPE
  CLUS_1                            4                             12
  CLUS_2                            3                             18
D14V2, binary
                                cls
clus                              0  1
  DEL PEAK 10(10Q22.3) MUTATED    3  4
  DEL PEAK 10(10Q22.3) WILD-TYPE 17 13
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 10(10Q22.3) MUTATED      3    4
  DEL PEAK 10(10Q22.3) WILD-TYPE   17   13
        clus
vv       DEL PEAK 10(10Q22.3) MUTATED DEL PEAK 10(10Q22.3) WILD-TYPE
  CLUS_1                            3                             17
  CLUS_2                            4                             13
D14V3, binary
                                cls
clus                              0  1
  DEL PEAK 10(10Q22.3) MUTATED    4  2
  DEL PEAK 10(10Q22.3) WILD-TYPE 12  8
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 10(10Q22.3) MUTATED      4    2
  DEL PEAK 10(10Q22.3) WILD-TYPE   12    8
        clus
vv       DEL PEAK 10(10Q22.3) MUTATED DEL PEAK 10(10Q22.3) WILD-TYPE
  CLUS_1                            4                             12
  CLUS_2                            2                              8
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(10Q22.3) MUTATED        1      4      1
  DEL PEAK 10(10Q22.3) WILD-TYPE      8      8      4
D14V4, multiclass
        clus
vv       DEL PEAK 10(10Q22.3) MUTATED DEL PEAK 10(10Q22.3) WILD-TYPE
  CLUS_1                            1                              8
  CLUS_2                            4                              8
  CLUS_3                            1                              4
D14V5, binary
                                cls
clus                              0  1
  DEL PEAK 10(10Q22.3) MUTATED    2  4
  DEL PEAK 10(10Q22.3) WILD-TYPE 12  8
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 10(10Q22.3) MUTATED      2    4
  DEL PEAK 10(10Q22.3) WILD-TYPE   12    8
        clus
vv       DEL PEAK 10(10Q22.3) MUTATED DEL PEAK 10(10Q22.3) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            4                              8
D14V6, binary
                                cls
clus                              0  1
  DEL PEAK 10(10Q22.3) MUTATED    4  2
  DEL PEAK 10(10Q22.3) WILD-TYPE  7 13
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 10(10Q22.3) MUTATED      4    2
  DEL PEAK 10(10Q22.3) WILD-TYPE    7   13
        clus
vv       DEL PEAK 10(10Q22.3) MUTATED DEL PEAK 10(10Q22.3) WILD-TYPE
  CLUS_1                            4                              7
  CLUS_2                            2                             13

Clustering(15) Variable = DEL PEAK 11(10Q24.1) MUTATION ANALYSIS
D15V1, binary
                                cls
clus                              0  1
  DEL PEAK 11(10Q24.1) MUTATED    7  6
  DEL PEAK 11(10Q24.1) WILD-TYPE  9 15
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 11(10Q24.1) MUTATED      7    6
  DEL PEAK 11(10Q24.1) WILD-TYPE    9   15
        clus
vv       DEL PEAK 11(10Q24.1) MUTATED DEL PEAK 11(10Q24.1) WILD-TYPE
  CLUS_1                            7                              9
  CLUS_2                            6                             15
D15V2, binary
                                cls
clus                              0  1
  DEL PEAK 11(10Q24.1) MUTATED    8  5
  DEL PEAK 11(10Q24.1) WILD-TYPE 12 12
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 11(10Q24.1) MUTATED      8    5
  DEL PEAK 11(10Q24.1) WILD-TYPE   12   12
        clus
vv       DEL PEAK 11(10Q24.1) MUTATED DEL PEAK 11(10Q24.1) WILD-TYPE
  CLUS_1                            8                             12
  CLUS_2                            5                             12
D15V3, binary
                                cls
clus                              0  1
  DEL PEAK 11(10Q24.1) MUTATED    5  6
  DEL PEAK 11(10Q24.1) WILD-TYPE 11  4
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 11(10Q24.1) MUTATED      5    6
  DEL PEAK 11(10Q24.1) WILD-TYPE   11    4
        clus
vv       DEL PEAK 11(10Q24.1) MUTATED DEL PEAK 11(10Q24.1) WILD-TYPE
  CLUS_1                            5                             11
  CLUS_2                            6                              4
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(10Q24.1) MUTATED        2      5      4
  DEL PEAK 11(10Q24.1) WILD-TYPE      7      7      1
D15V4, multiclass
        clus
vv       DEL PEAK 11(10Q24.1) MUTATED DEL PEAK 11(10Q24.1) WILD-TYPE
  CLUS_1                            2                              7
  CLUS_2                            5                              7
  CLUS_3                            4                              1
D15V5, binary
                                cls
clus                              0  1
  DEL PEAK 11(10Q24.1) MUTATED    3  8
  DEL PEAK 11(10Q24.1) WILD-TYPE 11  4
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 11(10Q24.1) MUTATED      3    8
  DEL PEAK 11(10Q24.1) WILD-TYPE   11    4
        clus
vv       DEL PEAK 11(10Q24.1) MUTATED DEL PEAK 11(10Q24.1) WILD-TYPE
  CLUS_1                            3                             11
  CLUS_2                            8                              4
D15V6, binary
                                cls
clus                              0  1
  DEL PEAK 11(10Q24.1) MUTATED    8  3
  DEL PEAK 11(10Q24.1) WILD-TYPE  3 12
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 11(10Q24.1) MUTATED      8    3
  DEL PEAK 11(10Q24.1) WILD-TYPE    3   12
        clus
vv       DEL PEAK 11(10Q24.1) MUTATED DEL PEAK 11(10Q24.1) WILD-TYPE
  CLUS_1                            8                              3
  CLUS_2                            3                             12

Clustering(16) Variable = DEL PEAK 12(13Q13.3) MUTATION ANALYSIS
D16V1, binary
                                cls
clus                              0  1
  DEL PEAK 12(13Q13.3) MUTATED   13  8
  DEL PEAK 12(13Q13.3) WILD-TYPE  3 13
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 12(13Q13.3) MUTATED     13    8
  DEL PEAK 12(13Q13.3) WILD-TYPE    3   13
        clus
vv       DEL PEAK 12(13Q13.3) MUTATED DEL PEAK 12(13Q13.3) WILD-TYPE
  CLUS_1                           13                              3
  CLUS_2                            8                             13
D16V2, binary
                                cls
clus                              0  1
  DEL PEAK 12(13Q13.3) MUTATED   10 11
  DEL PEAK 12(13Q13.3) WILD-TYPE 10  6
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 12(13Q13.3) MUTATED     10   11
  DEL PEAK 12(13Q13.3) WILD-TYPE   10    6
        clus
vv       DEL PEAK 12(13Q13.3) MUTATED DEL PEAK 12(13Q13.3) WILD-TYPE
  CLUS_1                           10                             10
  CLUS_2                           11                              6
D16V3, binary
                                cls
clus                              0  1
  DEL PEAK 12(13Q13.3) MUTATED   10  6
  DEL PEAK 12(13Q13.3) WILD-TYPE  6  4
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 12(13Q13.3) MUTATED     10    6
  DEL PEAK 12(13Q13.3) WILD-TYPE    6    4
        clus
vv       DEL PEAK 12(13Q13.3) MUTATED DEL PEAK 12(13Q13.3) WILD-TYPE
  CLUS_1                           10                              6
  CLUS_2                            6                              4
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(13Q13.3) MUTATED        7      6      3
  DEL PEAK 12(13Q13.3) WILD-TYPE      2      6      2
D16V4, multiclass
        clus
vv       DEL PEAK 12(13Q13.3) MUTATED DEL PEAK 12(13Q13.3) WILD-TYPE
  CLUS_1                            7                              2
  CLUS_2                            6                              6
  CLUS_3                            3                              2
D16V5, binary
                                cls
clus                             0 1
  DEL PEAK 12(13Q13.3) MUTATED   9 7
  DEL PEAK 12(13Q13.3) WILD-TYPE 5 5
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 12(13Q13.3) MUTATED      9    7
  DEL PEAK 12(13Q13.3) WILD-TYPE    5    5
        clus
vv       DEL PEAK 12(13Q13.3) MUTATED DEL PEAK 12(13Q13.3) WILD-TYPE
  CLUS_1                            9                              5
  CLUS_2                            7                              5
D16V6, binary
                                cls
clus                              0  1
  DEL PEAK 12(13Q13.3) MUTATED    6 10
  DEL PEAK 12(13Q13.3) WILD-TYPE  5  5
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 12(13Q13.3) MUTATED      6   10
  DEL PEAK 12(13Q13.3) WILD-TYPE    5    5
        clus
vv       DEL PEAK 12(13Q13.3) MUTATED DEL PEAK 12(13Q13.3) WILD-TYPE
  CLUS_1                            6                              5
  CLUS_2                           10                              5

Clustering(17) Variable = DEL PEAK 13(14Q11.2) MUTATION ANALYSIS
D17V1, binary
                                cls
clus                              0  1
  DEL PEAK 13(14Q11.2) MUTATED   11  5
  DEL PEAK 13(14Q11.2) WILD-TYPE  5 16
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 13(14Q11.2) MUTATED     11    5
  DEL PEAK 13(14Q11.2) WILD-TYPE    5   16
        clus
vv       DEL PEAK 13(14Q11.2) MUTATED DEL PEAK 13(14Q11.2) WILD-TYPE
  CLUS_1                           11                              5
  CLUS_2                            5                             16
D17V2, binary
                                cls
clus                              0  1
  DEL PEAK 13(14Q11.2) MUTATED    8  8
  DEL PEAK 13(14Q11.2) WILD-TYPE 12  9
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 13(14Q11.2) MUTATED      8    8
  DEL PEAK 13(14Q11.2) WILD-TYPE   12    9
        clus
vv       DEL PEAK 13(14Q11.2) MUTATED DEL PEAK 13(14Q11.2) WILD-TYPE
  CLUS_1                            8                             12
  CLUS_2                            8                              9
D17V3, binary
                                cls
clus                              0  1
  DEL PEAK 13(14Q11.2) MUTATED   11  3
  DEL PEAK 13(14Q11.2) WILD-TYPE  5  7
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 13(14Q11.2) MUTATED     11    3
  DEL PEAK 13(14Q11.2) WILD-TYPE    5    7
        clus
vv       DEL PEAK 13(14Q11.2) MUTATED DEL PEAK 13(14Q11.2) WILD-TYPE
  CLUS_1                           11                              5
  CLUS_2                            3                              7
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(14Q11.2) MUTATED        5      8      1
  DEL PEAK 13(14Q11.2) WILD-TYPE      4      4      4
D17V4, multiclass
        clus
vv       DEL PEAK 13(14Q11.2) MUTATED DEL PEAK 13(14Q11.2) WILD-TYPE
  CLUS_1                            5                              4
  CLUS_2                            8                              4
  CLUS_3                            1                              4
D17V5, binary
                                cls
clus                             0 1
  DEL PEAK 13(14Q11.2) MUTATED   9 5
  DEL PEAK 13(14Q11.2) WILD-TYPE 5 7
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 13(14Q11.2) MUTATED      9    5
  DEL PEAK 13(14Q11.2) WILD-TYPE    5    7
        clus
vv       DEL PEAK 13(14Q11.2) MUTATED DEL PEAK 13(14Q11.2) WILD-TYPE
  CLUS_1                            9                              5
  CLUS_2                            5                              7
D17V6, binary
                                cls
clus                              0  1
  DEL PEAK 13(14Q11.2) MUTATED    4 10
  DEL PEAK 13(14Q11.2) WILD-TYPE  7  5
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 13(14Q11.2) MUTATED      4   10
  DEL PEAK 13(14Q11.2) WILD-TYPE    7    5
        clus
vv       DEL PEAK 13(14Q11.2) MUTATED DEL PEAK 13(14Q11.2) WILD-TYPE
  CLUS_1                            4                              7
  CLUS_2                           10                              5

Clustering(18) Variable = DEL PEAK 14(14Q32.31) MUTATION ANALYSIS
D18V1, binary
                                 cls
clus                               0  1
  DEL PEAK 14(14Q32.31) MUTATED   13  6
  DEL PEAK 14(14Q32.31) WILD-TYPE  3 15
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 14(14Q32.31) MUTATED     13    6
  DEL PEAK 14(14Q32.31) WILD-TYPE    3   15
        clus
vv       DEL PEAK 14(14Q32.31) MUTATED DEL PEAK 14(14Q32.31) WILD-TYPE
  CLUS_1                            13                               3
  CLUS_2                             6                              15
D18V2, binary
                                 cls
clus                               0  1
  DEL PEAK 14(14Q32.31) MUTATED   10  9
  DEL PEAK 14(14Q32.31) WILD-TYPE 10  8
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 14(14Q32.31) MUTATED     10    9
  DEL PEAK 14(14Q32.31) WILD-TYPE   10    8
        clus
vv       DEL PEAK 14(14Q32.31) MUTATED DEL PEAK 14(14Q32.31) WILD-TYPE
  CLUS_1                            10                              10
  CLUS_2                             9                               8
D18V3, binary
                                 cls
clus                               0  1
  DEL PEAK 14(14Q32.31) MUTATED   11  3
  DEL PEAK 14(14Q32.31) WILD-TYPE  5  7
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 14(14Q32.31) MUTATED     11    3
  DEL PEAK 14(14Q32.31) WILD-TYPE    5    7
        clus
vv       DEL PEAK 14(14Q32.31) MUTATED DEL PEAK 14(14Q32.31) WILD-TYPE
  CLUS_1                            11                               5
  CLUS_2                             3                               7
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(14Q32.31) MUTATED        5      8      1
  DEL PEAK 14(14Q32.31) WILD-TYPE      4      4      4
D18V4, multiclass
        clus
vv       DEL PEAK 14(14Q32.31) MUTATED DEL PEAK 14(14Q32.31) WILD-TYPE
  CLUS_1                             5                               4
  CLUS_2                             8                               4
  CLUS_3                             1                               4
D18V5, binary
                                 cls
clus                              0 1
  DEL PEAK 14(14Q32.31) MUTATED   9 5
  DEL PEAK 14(14Q32.31) WILD-TYPE 5 7
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 14(14Q32.31) MUTATED      9    5
  DEL PEAK 14(14Q32.31) WILD-TYPE    5    7
        clus
vv       DEL PEAK 14(14Q32.31) MUTATED DEL PEAK 14(14Q32.31) WILD-TYPE
  CLUS_1                             9                               5
  CLUS_2                             5                               7
D18V6, binary
                                 cls
clus                               0  1
  DEL PEAK 14(14Q32.31) MUTATED    4 10
  DEL PEAK 14(14Q32.31) WILD-TYPE  7  5
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 14(14Q32.31) MUTATED      4   10
  DEL PEAK 14(14Q32.31) WILD-TYPE    7    5
        clus
vv       DEL PEAK 14(14Q32.31) MUTATED DEL PEAK 14(14Q32.31) WILD-TYPE
  CLUS_1                             4                               7
  CLUS_2                            10                               5

Clustering(19) Variable = DEL PEAK 15(15Q15.1) MUTATION ANALYSIS
D19V1, binary
                                cls
clus                              0  1
  DEL PEAK 15(15Q15.1) MUTATED   11  3
  DEL PEAK 15(15Q15.1) WILD-TYPE  5 18
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 15(15Q15.1) MUTATED     11    3
  DEL PEAK 15(15Q15.1) WILD-TYPE    5   18
        clus
vv       DEL PEAK 15(15Q15.1) MUTATED DEL PEAK 15(15Q15.1) WILD-TYPE
  CLUS_1                           11                              5
  CLUS_2                            3                             18
D19V2, binary
                                cls
clus                              0  1
  DEL PEAK 15(15Q15.1) MUTATED    8  6
  DEL PEAK 15(15Q15.1) WILD-TYPE 12 11
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 15(15Q15.1) MUTATED      8    6
  DEL PEAK 15(15Q15.1) WILD-TYPE   12   11
        clus
vv       DEL PEAK 15(15Q15.1) MUTATED DEL PEAK 15(15Q15.1) WILD-TYPE
  CLUS_1                            8                             12
  CLUS_2                            6                             11
D19V3, binary
                                cls
clus                              0  1
  DEL PEAK 15(15Q15.1) MUTATED    6  4
  DEL PEAK 15(15Q15.1) WILD-TYPE 10  6
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 15(15Q15.1) MUTATED      6    4
  DEL PEAK 15(15Q15.1) WILD-TYPE   10    6
        clus
vv       DEL PEAK 15(15Q15.1) MUTATED DEL PEAK 15(15Q15.1) WILD-TYPE
  CLUS_1                            6                             10
  CLUS_2                            4                              6
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(15Q15.1) MUTATED        3      5      2
  DEL PEAK 15(15Q15.1) WILD-TYPE      6      7      3
D19V4, multiclass
        clus
vv       DEL PEAK 15(15Q15.1) MUTATED DEL PEAK 15(15Q15.1) WILD-TYPE
  CLUS_1                            3                              6
  CLUS_2                            5                              7
  CLUS_3                            2                              3
D19V5, binary
                                cls
clus                             0 1
  DEL PEAK 15(15Q15.1) MUTATED   5 5
  DEL PEAK 15(15Q15.1) WILD-TYPE 9 7
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 15(15Q15.1) MUTATED      5    5
  DEL PEAK 15(15Q15.1) WILD-TYPE    9    7
        clus
vv       DEL PEAK 15(15Q15.1) MUTATED DEL PEAK 15(15Q15.1) WILD-TYPE
  CLUS_1                            5                              9
  CLUS_2                            5                              7
D19V6, binary
                                cls
clus                              0  1
  DEL PEAK 15(15Q15.1) MUTATED    5  5
  DEL PEAK 15(15Q15.1) WILD-TYPE  6 10
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 15(15Q15.1) MUTATED      5    5
  DEL PEAK 15(15Q15.1) WILD-TYPE    6   10
        clus
vv       DEL PEAK 15(15Q15.1) MUTATED DEL PEAK 15(15Q15.1) WILD-TYPE
  CLUS_1                            5                              6
  CLUS_2                            5                             10

Clustering(20) Variable = DEL PEAK 16(16P13.3) MUTATION ANALYSIS
D20V1, binary
                                cls
clus                              0  1
  DEL PEAK 16(16P13.3) MUTATED    1  2
  DEL PEAK 16(16P13.3) WILD-TYPE 15 19
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 16(16P13.3) MUTATED      1    2
  DEL PEAK 16(16P13.3) WILD-TYPE   15   19
        clus
vv       DEL PEAK 16(16P13.3) MUTATED DEL PEAK 16(16P13.3) WILD-TYPE
  CLUS_1                            1                             15
  CLUS_2                            2                             19
D20V2, binary
                                cls
clus                              0  1
  DEL PEAK 16(16P13.3) MUTATED    0  3
  DEL PEAK 16(16P13.3) WILD-TYPE 20 14
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 16(16P13.3) MUTATED      0    3
  DEL PEAK 16(16P13.3) WILD-TYPE   20   14
        clus
vv       DEL PEAK 16(16P13.3) MUTATED DEL PEAK 16(16P13.3) WILD-TYPE
  CLUS_1                            0                             20
  CLUS_2                            3                             14
D20V3, binary
                                cls
clus                              0  1
  DEL PEAK 16(16P13.3) MUTATED    1  1
  DEL PEAK 16(16P13.3) WILD-TYPE 15  9
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 16(16P13.3) MUTATED      1    1
  DEL PEAK 16(16P13.3) WILD-TYPE   15    9
        clus
vv       DEL PEAK 16(16P13.3) MUTATED DEL PEAK 16(16P13.3) WILD-TYPE
  CLUS_1                            1                             15
  CLUS_2                            1                              9
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(16P13.3) MUTATED        1      1      0
  DEL PEAK 16(16P13.3) WILD-TYPE      8     11      5
D20V4, multiclass
[1] "Remove cluster labels:"       "DEL PEAK 16(16P13.3) MUTATED"
clus
  DEL PEAK 16(16P13.3) MUTATED DEL PEAK 16(16P13.3) WILD-TYPE 
                             2                             24 
                    TCGA-LK-A4NW                     TCGA-LK-A4O2 
"DEL PEAK 16(16P13.3) WILD-TYPE" "DEL PEAK 16(16P13.3) WILD-TYPE" 
                    TCGA-LK-A4O4                     TCGA-LK-A4O5 
"DEL PEAK 16(16P13.3) WILD-TYPE" "DEL PEAK 16(16P13.3) WILD-TYPE" 
                    TCGA-LK-A4O6                     TCGA-LK-A4O7 
"DEL PEAK 16(16P13.3) WILD-TYPE" "DEL PEAK 16(16P13.3) WILD-TYPE" 
                    TCGA-MQ-A4LI                     TCGA-MQ-A4LJ 
"DEL PEAK 16(16P13.3) WILD-TYPE" "DEL PEAK 16(16P13.3) WILD-TYPE" 
                    TCGA-MQ-A4LP                     TCGA-MQ-A4LV 
"DEL PEAK 16(16P13.3) WILD-TYPE" "DEL PEAK 16(16P13.3) WILD-TYPE" 
                    TCGA-MQ-A6BL                     TCGA-MQ-A6BS 
"DEL PEAK 16(16P13.3) WILD-TYPE" "DEL PEAK 16(16P13.3) WILD-TYPE" 
                    TCGA-NQ-A57I                     TCGA-NQ-A638 
"DEL PEAK 16(16P13.3) WILD-TYPE" "DEL PEAK 16(16P13.3) WILD-TYPE" 
                    TCGA-SC-A6LM                     TCGA-SC-A6LN 
"DEL PEAK 16(16P13.3) WILD-TYPE" "DEL PEAK 16(16P13.3) WILD-TYPE" 
                    TCGA-SC-A6LR                     TCGA-SH-A7BC 
"DEL PEAK 16(16P13.3) WILD-TYPE" "DEL PEAK 16(16P13.3) WILD-TYPE" 
                    TCGA-SH-A7BD                     TCGA-SH-A7BH 
"DEL PEAK 16(16P13.3) WILD-TYPE" "DEL PEAK 16(16P13.3) WILD-TYPE" 
                    TCGA-TS-A7OY                     TCGA-TS-A7P0 
"DEL PEAK 16(16P13.3) WILD-TYPE" "DEL PEAK 16(16P13.3) WILD-TYPE" 
                    TCGA-TS-A7P8                     TCGA-TS-A7PB 
"DEL PEAK 16(16P13.3) WILD-TYPE" "DEL PEAK 16(16P13.3) WILD-TYPE" 
D20V5, binary
                                cls
clus                              0  1
  DEL PEAK 16(16P13.3) MUTATED    1  1
  DEL PEAK 16(16P13.3) WILD-TYPE 13 11
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 16(16P13.3) MUTATED      1    1
  DEL PEAK 16(16P13.3) WILD-TYPE   13   11
        clus
vv       DEL PEAK 16(16P13.3) MUTATED DEL PEAK 16(16P13.3) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            1                             11
D20V6, binary
                                cls
clus                              0  1
  DEL PEAK 16(16P13.3) MUTATED    1  1
  DEL PEAK 16(16P13.3) WILD-TYPE 10 14
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 16(16P13.3) MUTATED      1    1
  DEL PEAK 16(16P13.3) WILD-TYPE   10   14
        clus
vv       DEL PEAK 16(16P13.3) MUTATED DEL PEAK 16(16P13.3) WILD-TYPE
  CLUS_1                            1                             10
  CLUS_2                            1                             14

Clustering(21) Variable = DEL PEAK 17(16Q21) MUTATION ANALYSIS
D21V1, binary
                              cls
clus                            0  1
  DEL PEAK 17(16Q21) MUTATED    7  2
  DEL PEAK 17(16Q21) WILD-TYPE  9 19
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 17(16Q21) MUTATED      7    2
  DEL PEAK 17(16Q21) WILD-TYPE    9   19
        clus
vv       DEL PEAK 17(16Q21) MUTATED DEL PEAK 17(16Q21) WILD-TYPE
  CLUS_1                          7                            9
  CLUS_2                          2                           19
D21V2, binary
                              cls
clus                            0  1
  DEL PEAK 17(16Q21) MUTATED    5  4
  DEL PEAK 17(16Q21) WILD-TYPE 15 13
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 17(16Q21) MUTATED      5    4
  DEL PEAK 17(16Q21) WILD-TYPE   15   13
        clus
vv       DEL PEAK 17(16Q21) MUTATED DEL PEAK 17(16Q21) WILD-TYPE
  CLUS_1                          5                           15
  CLUS_2                          4                           13
D21V3, binary
                              cls
clus                            0  1
  DEL PEAK 17(16Q21) MUTATED    4  4
  DEL PEAK 17(16Q21) WILD-TYPE 12  6
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 17(16Q21) MUTATED      4    4
  DEL PEAK 17(16Q21) WILD-TYPE   12    6
        clus
vv       DEL PEAK 17(16Q21) MUTATED DEL PEAK 17(16Q21) WILD-TYPE
  CLUS_1                          4                           12
  CLUS_2                          4                            6
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(16Q21) MUTATED        3      4      1
  DEL PEAK 17(16Q21) WILD-TYPE      6      8      4
D21V4, multiclass
        clus
vv       DEL PEAK 17(16Q21) MUTATED DEL PEAK 17(16Q21) WILD-TYPE
  CLUS_1                          3                            6
  CLUS_2                          4                            8
  CLUS_3                          1                            4
D21V5, binary
                              cls
clus                            0  1
  DEL PEAK 17(16Q21) MUTATED    3  5
  DEL PEAK 17(16Q21) WILD-TYPE 11  7
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 17(16Q21) MUTATED      3    5
  DEL PEAK 17(16Q21) WILD-TYPE   11    7
        clus
vv       DEL PEAK 17(16Q21) MUTATED DEL PEAK 17(16Q21) WILD-TYPE
  CLUS_1                          3                           11
  CLUS_2                          5                            7
D21V6, binary
                              cls
clus                            0  1
  DEL PEAK 17(16Q21) MUTATED    5  3
  DEL PEAK 17(16Q21) WILD-TYPE  6 12
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 17(16Q21) MUTATED      5    3
  DEL PEAK 17(16Q21) WILD-TYPE    6   12
        clus
vv       DEL PEAK 17(16Q21) MUTATED DEL PEAK 17(16Q21) WILD-TYPE
  CLUS_1                          5                            6
  CLUS_2                          3                           12

Clustering(22) Variable = DEL PEAK 18(16Q24.1) MUTATION ANALYSIS
D22V1, binary
                                cls
clus                              0  1
  DEL PEAK 18(16Q24.1) MUTATED    9  2
  DEL PEAK 18(16Q24.1) WILD-TYPE  7 19
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 18(16Q24.1) MUTATED      9    2
  DEL PEAK 18(16Q24.1) WILD-TYPE    7   19
        clus
vv       DEL PEAK 18(16Q24.1) MUTATED DEL PEAK 18(16Q24.1) WILD-TYPE
  CLUS_1                            9                              7
  CLUS_2                            2                             19
D22V2, binary
                                cls
clus                              0  1
  DEL PEAK 18(16Q24.1) MUTATED    7  4
  DEL PEAK 18(16Q24.1) WILD-TYPE 13 13
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 18(16Q24.1) MUTATED      7    4
  DEL PEAK 18(16Q24.1) WILD-TYPE   13   13
        clus
vv       DEL PEAK 18(16Q24.1) MUTATED DEL PEAK 18(16Q24.1) WILD-TYPE
  CLUS_1                            7                             13
  CLUS_2                            4                             13
D22V3, binary
                                cls
clus                              0  1
  DEL PEAK 18(16Q24.1) MUTATED    5  3
  DEL PEAK 18(16Q24.1) WILD-TYPE 11  7
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 18(16Q24.1) MUTATED      5    3
  DEL PEAK 18(16Q24.1) WILD-TYPE   11    7
        clus
vv       DEL PEAK 18(16Q24.1) MUTATED DEL PEAK 18(16Q24.1) WILD-TYPE
  CLUS_1                            5                             11
  CLUS_2                            3                              7
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(16Q24.1) MUTATED        2      5      1
  DEL PEAK 18(16Q24.1) WILD-TYPE      7      7      4
D22V4, multiclass
        clus
vv       DEL PEAK 18(16Q24.1) MUTATED DEL PEAK 18(16Q24.1) WILD-TYPE
  CLUS_1                            2                              7
  CLUS_2                            5                              7
  CLUS_3                            1                              4
D22V5, binary
                                cls
clus                              0  1
  DEL PEAK 18(16Q24.1) MUTATED    4  4
  DEL PEAK 18(16Q24.1) WILD-TYPE 10  8
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 18(16Q24.1) MUTATED      4    4
  DEL PEAK 18(16Q24.1) WILD-TYPE   10    8
        clus
vv       DEL PEAK 18(16Q24.1) MUTATED DEL PEAK 18(16Q24.1) WILD-TYPE
  CLUS_1                            4                             10
  CLUS_2                            4                              8
D22V6, binary
                                cls
clus                              0  1
  DEL PEAK 18(16Q24.1) MUTATED    4  4
  DEL PEAK 18(16Q24.1) WILD-TYPE  7 11
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 18(16Q24.1) MUTATED      4    4
  DEL PEAK 18(16Q24.1) WILD-TYPE    7   11
        clus
vv       DEL PEAK 18(16Q24.1) MUTATED DEL PEAK 18(16Q24.1) WILD-TYPE
  CLUS_1                            4                              7
  CLUS_2                            4                             11

Clustering(23) Variable = DEL PEAK 19(22Q12.2) MUTATION ANALYSIS
D23V1, binary
                                cls
clus                              0  1
  DEL PEAK 19(22Q12.2) MUTATED   15 14
  DEL PEAK 19(22Q12.2) WILD-TYPE  1  7
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 19(22Q12.2) MUTATED     15   14
  DEL PEAK 19(22Q12.2) WILD-TYPE    1    7
        clus
vv       DEL PEAK 19(22Q12.2) MUTATED DEL PEAK 19(22Q12.2) WILD-TYPE
  CLUS_1                           15                              1
  CLUS_2                           14                              7
D23V2, binary
                                cls
clus                              0  1
  DEL PEAK 19(22Q12.2) MUTATED   18 11
  DEL PEAK 19(22Q12.2) WILD-TYPE  2  6
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 19(22Q12.2) MUTATED     18   11
  DEL PEAK 19(22Q12.2) WILD-TYPE    2    6
        clus
vv       DEL PEAK 19(22Q12.2) MUTATED DEL PEAK 19(22Q12.2) WILD-TYPE
  CLUS_1                           18                              2
  CLUS_2                           11                              6
D23V3, binary
                                cls
clus                              0  1
  DEL PEAK 19(22Q12.2) MUTATED   10 10
  DEL PEAK 19(22Q12.2) WILD-TYPE  6  0
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 19(22Q12.2) MUTATED     10   10
  DEL PEAK 19(22Q12.2) WILD-TYPE    6    0
        clus
vv       DEL PEAK 19(22Q12.2) MUTATED DEL PEAK 19(22Q12.2) WILD-TYPE
  CLUS_1                           10                              6
  CLUS_2                           10                              0
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(22Q12.2) MUTATED        8      7      5
  DEL PEAK 19(22Q12.2) WILD-TYPE      1      5      0
D23V4, multiclass
        clus
vv       DEL PEAK 19(22Q12.2) MUTATED DEL PEAK 19(22Q12.2) WILD-TYPE
  CLUS_1                            8                              1
  CLUS_2                            7                              5
  CLUS_3                            5                              0
D23V5, binary
                                cls
clus                              0  1
  DEL PEAK 19(22Q12.2) MUTATED    8 12
  DEL PEAK 19(22Q12.2) WILD-TYPE  6  0
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 19(22Q12.2) MUTATED      8   12
  DEL PEAK 19(22Q12.2) WILD-TYPE    6    0
        clus
vv       DEL PEAK 19(22Q12.2) MUTATED DEL PEAK 19(22Q12.2) WILD-TYPE
  CLUS_1                            8                              6
  CLUS_2                           12                              0
D23V6, binary
                                cls
clus                              0  1
  DEL PEAK 19(22Q12.2) MUTATED   11  9
  DEL PEAK 19(22Q12.2) WILD-TYPE  0  6
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 19(22Q12.2) MUTATED     11    9
  DEL PEAK 19(22Q12.2) WILD-TYPE    0    6
        clus
vv       DEL PEAK 19(22Q12.2) MUTATED DEL PEAK 19(22Q12.2) WILD-TYPE
  CLUS_1                           11                              0
  CLUS_2                            9                              6
> q(save="no")
