Pipeline Input Name	Archive Result File REF	Comment [TCGA Archive Name]	Protocol REF	Data Transformation Name	Derived Data File	Comment [TCGA Data Type]	Comment [TCGA Data Level]	Comment [TCGA File Type]	Comment [TCGA Archive Name]	Comment [TCGA Include for Analysis]
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_MESO-TP.CopyNumber_Gistic2.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Focal_2014041600	table.1.txt	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	txt	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Focal.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_MESO-TP.CopyNumber_Gistic2.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Focal_2014041600	D6V4.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Focal.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_MESO-TP.CopyNumber_Gistic2.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Focal_2014041600	D22V1.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Focal.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_MESO-TP.CopyNumber_Gistic2.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Focal_2014041600	D8V3.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Focal.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_MESO-TP.CopyNumber_Gistic2.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Focal_2014041600	D8V4.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Focal.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_MESO-TP.CopyNumber_Gistic2.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Focal_2014041600	D18V1.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Focal.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_MESO-TP.CopyNumber_Gistic2.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Focal_2014041600	D1V1.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Focal.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_MESO-TP.CopyNumber_Gistic2.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Focal_2014041600	D5V1.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Focal.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_MESO-TP.CopyNumber_Gistic2.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Focal_2014041600	D23V6.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Focal.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_MESO-TP.CopyNumber_Gistic2.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Focal_2014041600	D8V5.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Focal.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_MESO-TP.CopyNumber_Gistic2.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Focal_2014041600	D17V1.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Focal.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_MESO-TP.CopyNumber_Gistic2.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Focal_2014041600	D13V1.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Focal.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_MESO-TP.CopyNumber_Gistic2.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Focal_2014041600	D8V5.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Focal.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_MESO-TP.CopyNumber_Gistic2.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Focal_2014041600	D8V3.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Focal.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_MESO-TP.CopyNumber_Gistic2.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Focal_2014041600	D21V1.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Focal.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_MESO-TP.CopyNumber_Gistic2.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Focal_2014041600	D15V5.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Focal.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_MESO-TP.CopyNumber_Gistic2.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Focal_2014041600	D12V1.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Focal.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_MESO-TP.CopyNumber_Gistic2.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Focal_2014041600	D9V1.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Focal.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_MESO-TP.CopyNumber_Gistic2.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Focal_2014041600	D19V1.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Focal.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_MESO-TP.CopyNumber_Gistic2.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Focal_2014041600	D15V6.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Focal.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_MESO-TP.CopyNumber_Gistic2.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Focal_2014041600	D19V1.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Focal.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_MESO-TP.CopyNumber_Gistic2.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Focal_2014041600	D12V1.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Focal.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_MESO-TP.CopyNumber_Gistic2.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Focal_2014041600	D23V5.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Focal.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_MESO-TP.CopyNumber_Gistic2.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Focal_2014041600	D8V6.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Focal.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_MESO-TP.CopyNumber_Gistic2.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Focal_2014041600	D16V1.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Focal.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_MESO-TP.CopyNumber_Gistic2.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Focal_2014041600	D8V5.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Focal.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_MESO-TP.CopyNumber_Gistic2.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Focal_2014041600	D8V5.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Focal.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_MESO-TP.CopyNumber_Gistic2.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Focal_2014041600	D15V5.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Focal.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_MESO-TP.CopyNumber_Gistic2.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Focal_2014041600	D19V1.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Focal.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_MESO-TP.CopyNumber_Gistic2.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Focal_2014041600	D19V1.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Focal.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_MESO-TP.CopyNumber_Gistic2.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Focal_2014041600	D21V1.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Focal.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_MESO-TP.CopyNumber_Gistic2.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Focal_2014041600	D15V6.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Focal.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_MESO-TP.CopyNumber_Gistic2.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Focal_2014041600	D13V1.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Focal.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_MESO-TP.CopyNumber_Gistic2.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Focal_2014041600	D1V1.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Focal.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_MESO-TP.CopyNumber_Gistic2.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Focal_2014041600	D18V1.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Focal.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_MESO-TP.CopyNumber_Gistic2.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Focal_2014041600	D5V1.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Focal.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_MESO-TP.CopyNumber_Gistic2.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Focal_2014041600	D12V1.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Focal.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_MESO-TP.CopyNumber_Gistic2.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Focal_2014041600	D8V6.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Focal.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_MESO-TP.CopyNumber_Gistic2.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Focal_2014041600	D22V1.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Focal.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_MESO-TP.CopyNumber_Gistic2.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Focal_2014041600	D23V6.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Focal.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_MESO-TP.CopyNumber_Gistic2.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Focal_2014041600	D12V1.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Focal.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_MESO-TP.CopyNumber_Gistic2.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Focal_2014041600	D8V4.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Focal.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_MESO-TP.CopyNumber_Gistic2.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Focal_2014041600	D17V1.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Focal.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_MESO-TP.CopyNumber_Gistic2.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Focal_2014041600	D8V3.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Focal.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_MESO-TP.CopyNumber_Gistic2.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Focal_2014041600	D8V3.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Focal.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_MESO-TP.CopyNumber_Gistic2.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Focal_2014041600	D9V1.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Focal.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_MESO-TP.CopyNumber_Gistic2.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Focal_2014041600	D16V1.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Focal.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_MESO-TP.CopyNumber_Gistic2.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Focal_2014041600	D23V5.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Focal.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_MESO-TP.CopyNumber_Gistic2.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Focal_2014041600	D6V4.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Focal.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_MESO-TP.CopyNumber_Gistic2.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Focal_2014041600	nozzle.html	report	Level_4	html	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Focal.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_MESO-TP.CopyNumber_Gistic2.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Focal_2014041600	nozzle.RData	report	Level_4	RData	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Focal.Level_4.2014041600.0.0	yes
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GDAC_Correlate_Genomic_Events:clinical.info.file	MESO-TP.transferedmergedcluster.txt	gdac.broadinstitute.org_MESO-TP.Aggregate_Molecular_Subtype_Clusters.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Focal_2014041600	D8V5.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Focal.Level_4.2014041600.0.0	yes
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GDAC_Correlate_Genomic_Events:clinical.info.file	MESO-TP.transferedmergedcluster.txt	gdac.broadinstitute.org_MESO-TP.Aggregate_Molecular_Subtype_Clusters.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Focal_2014041600	D13V1.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Focal.Level_4.2014041600.0.0	yes
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GDAC_Correlate_Genomic_Events:clinical.info.file	MESO-TP.transferedmergedcluster.txt	gdac.broadinstitute.org_MESO-TP.Aggregate_Molecular_Subtype_Clusters.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Focal_2014041600	D15V6.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Focal.Level_4.2014041600.0.0	yes
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GDAC_Correlate_Genomic_Events:clinical.info.file	MESO-TP.transferedmergedcluster.txt	gdac.broadinstitute.org_MESO-TP.Aggregate_Molecular_Subtype_Clusters.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Focal_2014041600	D8V5.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Focal.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events:clinical.info.file	MESO-TP.transferedmergedcluster.txt	gdac.broadinstitute.org_MESO-TP.Aggregate_Molecular_Subtype_Clusters.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Focal_2014041600	D8V5.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Focal.Level_4.2014041600.0.0	yes
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GDAC_Correlate_Genomic_Events:clinical.info.file	MESO-TP.transferedmergedcluster.txt	gdac.broadinstitute.org_MESO-TP.Aggregate_Molecular_Subtype_Clusters.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Focal_2014041600	D19V1.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Focal.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events:clinical.info.file	MESO-TP.transferedmergedcluster.txt	gdac.broadinstitute.org_MESO-TP.Aggregate_Molecular_Subtype_Clusters.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Focal_2014041600	D19V1.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Focal.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events:clinical.info.file	MESO-TP.transferedmergedcluster.txt	gdac.broadinstitute.org_MESO-TP.Aggregate_Molecular_Subtype_Clusters.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Focal_2014041600	D21V1.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Focal.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events:clinical.info.file	MESO-TP.transferedmergedcluster.txt	gdac.broadinstitute.org_MESO-TP.Aggregate_Molecular_Subtype_Clusters.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Focal_2014041600	D15V6.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Focal.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events:clinical.info.file	MESO-TP.transferedmergedcluster.txt	gdac.broadinstitute.org_MESO-TP.Aggregate_Molecular_Subtype_Clusters.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Focal_2014041600	D13V1.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Focal.Level_4.2014041600.0.0	yes
GDAC_Correlate_Genomic_Events:clinical.info.file	MESO-TP.transferedmergedcluster.txt	gdac.broadinstitute.org_MESO-TP.Aggregate_Molecular_Subtype_Clusters.Level_4.2014041600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_molecularSubtype_vs_CopyNumber_Focal_2014041600	D1V1.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_MESO-TP.Correlate_molecularSubtype_vs_CopyNumber_Focal.Level_4.2014041600.0.0	yes
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