
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/12/Correlate_Genomic_Events.R")
> result <- main("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/12/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-tTRUE", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/PAAD-TP/8278297/transformed.cor.cli.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/PAAD-TP/8143022/PAAD-TP.merged_data.txt", "-fF=", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=PAAD-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=PAAD-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/PAAD-TP/8143022/PAAD-TP.merged_data.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/PAAD-TP/8278297/transformed.cor.cli.txt"

nPatients in clinical file=76, in cluster file=91, common to both=72
[1] "Reduce the number of clustering variables from 43 to 42."
[1] 42 72
[1] "AMP PEAK  1(1P34.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE 
                            4                            68 
  AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE 
                            4                            68 
[1] "AMP PEAK  2(1P12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  2(1P12) MUTATED AMP PEAK  2(1P12) WILD-TYPE 
                         10                          62 
  AMP PEAK  2(1P12) MUTATED AMP PEAK  2(1P12) WILD-TYPE 
                         10                          62 
[1] "AMP PEAK  3(7Q22.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  3(7Q22.1) MUTATED AMP PEAK  3(7Q22.1) WILD-TYPE 
                           19                            53 
  AMP PEAK  3(7Q22.1) MUTATED AMP PEAK  3(7Q22.1) WILD-TYPE 
                           19                            53 
[1] "AMP PEAK  4(8Q24.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  4(8Q24.21) MUTATED AMP PEAK  4(8Q24.21) WILD-TYPE 
                            27                             45 
  AMP PEAK  4(8Q24.21) MUTATED AMP PEAK  4(8Q24.21) WILD-TYPE 
                            27                             45 
[1] "AMP PEAK  5(9P13.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  5(9P13.3) MUTATED AMP PEAK  5(9P13.3) WILD-TYPE 
                            8                            64 
  AMP PEAK  5(9P13.3) MUTATED AMP PEAK  5(9P13.3) WILD-TYPE 
                            8                            64 
[1] "AMP PEAK  6(11P11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  6(11P11.2) MUTATED AMP PEAK  6(11P11.2) WILD-TYPE 
                             8                             64 
  AMP PEAK  6(11P11.2) MUTATED AMP PEAK  6(11P11.2) WILD-TYPE 
                             8                             64 
[1] "AMP PEAK  7(12P13.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  7(12P13.33) MUTATED AMP PEAK  7(12P13.33) WILD-TYPE 
                              9                              63 
  AMP PEAK  7(12P13.33) MUTATED AMP PEAK  7(12P13.33) WILD-TYPE 
                              9                              63 
[1] "AMP PEAK  8(12P11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  8(12P11.21) MUTATED AMP PEAK  8(12P11.21) WILD-TYPE 
                             12                              60 
  AMP PEAK  8(12P11.21) MUTATED AMP PEAK  8(12P11.21) WILD-TYPE 
                             12                              60 
[1] "AMP PEAK  9(12Q15) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  9(12Q15) MUTATED AMP PEAK  9(12Q15) WILD-TYPE 
                           9                           63 
  AMP PEAK  9(12Q15) MUTATED AMP PEAK  9(12Q15) WILD-TYPE 
                           9                           63 
[1] "AMP PEAK 11(17Q21.32) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 11(17Q21.32) MUTATED AMP PEAK 11(17Q21.32) WILD-TYPE 
                              8                              64 
  AMP PEAK 11(17Q21.32) MUTATED AMP PEAK 11(17Q21.32) WILD-TYPE 
                              8                              64 
[1] "AMP PEAK 12(18Q11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 12(18Q11.2) MUTATED AMP PEAK 12(18Q11.2) WILD-TYPE 
                            22                             50 
  AMP PEAK 12(18Q11.2) MUTATED AMP PEAK 12(18Q11.2) WILD-TYPE 
                            22                             50 
[1] "AMP PEAK 13(19Q13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 13(19Q13.2) MUTATED AMP PEAK 13(19Q13.2) WILD-TYPE 
                            18                             54 
  AMP PEAK 13(19Q13.2) MUTATED AMP PEAK 13(19Q13.2) WILD-TYPE 
                            18                             54 
[1] "AMP PEAK 14(20Q13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 14(20Q13.2) MUTATED AMP PEAK 14(20Q13.2) WILD-TYPE 
                            17                             55 
  AMP PEAK 14(20Q13.2) MUTATED AMP PEAK 14(20Q13.2) WILD-TYPE 
                            17                             55 
[1] "AMP PEAK 15(XP22.11) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 15(XP22.11) MUTATED AMP PEAK 15(XP22.11) WILD-TYPE 
                             4                             68 
  AMP PEAK 15(XP22.11) MUTATED AMP PEAK 15(XP22.11) WILD-TYPE 
                             4                             68 
[1] "AMP PEAK 16(XQ27.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 16(XQ27.1) MUTATED AMP PEAK 16(XQ27.1) WILD-TYPE 
                            8                            64 
  AMP PEAK 16(XQ27.1) MUTATED AMP PEAK 16(XQ27.1) WILD-TYPE 
                            8                            64 
[1] "DEL PEAK  1(1P36.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE 
                            15                             57 
  DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE 
                            15                             57 
[1] "DEL PEAK  2(1P36.11) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE 
                            21                             51 
  DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE 
                            21                             51 
[1] "DEL PEAK  3(1Q42.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(1Q42.2) MUTATED DEL PEAK  3(1Q42.2) WILD-TYPE 
                            3                            69 
  DEL PEAK  3(1Q42.2) MUTATED DEL PEAK  3(1Q42.2) WILD-TYPE 
                            3                            69 
[1] "DEL PEAK  4(2P23.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(2P23.3) MUTATED DEL PEAK  4(2P23.3) WILD-TYPE 
                           10                            62 
  DEL PEAK  4(2P23.3) MUTATED DEL PEAK  4(2P23.3) WILD-TYPE 
                           10                            62 
[1] "DEL PEAK  5(3P24.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(3P24.1) MUTATED DEL PEAK  5(3P24.1) WILD-TYPE 
                           15                            57 
  DEL PEAK  5(3P24.1) MUTATED DEL PEAK  5(3P24.1) WILD-TYPE 
                           15                            57 
[1] "DEL PEAK  6(4Q35.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(4Q35.2) MUTATED DEL PEAK  6(4Q35.2) WILD-TYPE 
                           14                            58 
  DEL PEAK  6(4Q35.2) MUTATED DEL PEAK  6(4Q35.2) WILD-TYPE 
                           14                            58 
[1] "DEL PEAK  7(5Q14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(5Q14.2) MUTATED DEL PEAK  7(5Q14.2) WILD-TYPE 
                           14                            58 
  DEL PEAK  7(5Q14.2) MUTATED DEL PEAK  7(5Q14.2) WILD-TYPE 
                           14                            58 
[1] "DEL PEAK  8(6P25.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(6P25.2) MUTATED DEL PEAK  8(6P25.2) WILD-TYPE 
                           27                            45 
  DEL PEAK  8(6P25.2) MUTATED DEL PEAK  8(6P25.2) WILD-TYPE 
                           27                            45 
[1] "DEL PEAK  9(7Q36.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(7Q36.1) MUTATED DEL PEAK  9(7Q36.1) WILD-TYPE 
                            6                            66 
  DEL PEAK  9(7Q36.1) MUTATED DEL PEAK  9(7Q36.1) WILD-TYPE 
                            6                            66 
[1] "DEL PEAK 10(8P21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(8P21.3) MUTATED DEL PEAK 10(8P21.3) WILD-TYPE 
                           19                            53 
  DEL PEAK 10(8P21.3) MUTATED DEL PEAK 10(8P21.3) WILD-TYPE 
                           19                            53 
[1] "DEL PEAK 11(8Q12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(8Q12.1) MUTATED DEL PEAK 11(8Q12.1) WILD-TYPE 
                            6                            66 
  DEL PEAK 11(8Q12.1) MUTATED DEL PEAK 11(8Q12.1) WILD-TYPE 
                            6                            66 
[1] "DEL PEAK 12(9P21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(9P21.3) MUTATED DEL PEAK 12(9P21.3) WILD-TYPE 
                           44                            28 
  DEL PEAK 12(9P21.3) MUTATED DEL PEAK 12(9P21.3) WILD-TYPE 
                           44                            28 
[1] "DEL PEAK 13(9Q22.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(9Q22.33) MUTATED DEL PEAK 13(9Q22.33) WILD-TYPE 
                            17                             55 
  DEL PEAK 13(9Q22.33) MUTATED DEL PEAK 13(9Q22.33) WILD-TYPE 
                            17                             55 
[1] "DEL PEAK 14(9Q32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(9Q32) MUTATED DEL PEAK 14(9Q32) WILD-TYPE 
                         18                          54 
  DEL PEAK 14(9Q32) MUTATED DEL PEAK 14(9Q32) WILD-TYPE 
                         18                          54 
[1] "DEL PEAK 15(10Q23.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(10Q23.2) MUTATED DEL PEAK 15(10Q23.2) WILD-TYPE 
                            10                             62 
  DEL PEAK 15(10Q23.2) MUTATED DEL PEAK 15(10Q23.2) WILD-TYPE 
                            10                             62 
[1] "DEL PEAK 16(11P15.4) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(11P15.4) MUTATED DEL PEAK 16(11P15.4) WILD-TYPE 
                            13                             59 
  DEL PEAK 16(11P15.4) MUTATED DEL PEAK 16(11P15.4) WILD-TYPE 
                            13                             59 
[1] "DEL PEAK 17(12P12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(12P12.1) MUTATED DEL PEAK 17(12P12.1) WILD-TYPE 
                             9                             63 
  DEL PEAK 17(12P12.1) MUTATED DEL PEAK 17(12P12.1) WILD-TYPE 
                             9                             63 
[1] "DEL PEAK 18(12Q12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(12Q12) MUTATED DEL PEAK 18(12Q12) WILD-TYPE 
                           8                           64 
  DEL PEAK 18(12Q12) MUTATED DEL PEAK 18(12Q12) WILD-TYPE 
                           8                           64 
[1] "DEL PEAK 19(12Q24.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(12Q24.33) MUTATED DEL PEAK 19(12Q24.33) WILD-TYPE 
                             16                              56 
  DEL PEAK 19(12Q24.33) MUTATED DEL PEAK 19(12Q24.33) WILD-TYPE 
                             16                              56 
[1] "DEL PEAK 20(16Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(16Q23.1) MUTATED DEL PEAK 20(16Q23.1) WILD-TYPE 
                             4                             68 
  DEL PEAK 20(16Q23.1) MUTATED DEL PEAK 20(16Q23.1) WILD-TYPE 
                             4                             68 
[1] "DEL PEAK 21(17Q22) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(17Q22) MUTATED DEL PEAK 21(17Q22) WILD-TYPE 
                          20                           52 
  DEL PEAK 21(17Q22) MUTATED DEL PEAK 21(17Q22) WILD-TYPE 
                          20                           52 
[1] "DEL PEAK 22(18P11.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 22(18P11.32) MUTATED DEL PEAK 22(18P11.32) WILD-TYPE 
                             24                              48 
  DEL PEAK 22(18P11.32) MUTATED DEL PEAK 22(18P11.32) WILD-TYPE 
                             24                              48 
[1] "DEL PEAK 23(18Q21.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 23(18Q21.2) MUTATED DEL PEAK 23(18Q21.2) WILD-TYPE 
                            47                             25 
  DEL PEAK 23(18Q21.2) MUTATED DEL PEAK 23(18Q21.2) WILD-TYPE 
                            47                             25 
[1] "DEL PEAK 24(19P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 24(19P13.3) MUTATED DEL PEAK 24(19P13.3) WILD-TYPE 
                            11                             61 
  DEL PEAK 24(19P13.3) MUTATED DEL PEAK 24(19P13.3) WILD-TYPE 
                            11                             61 
[1] "DEL PEAK 25(19Q13.41) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 25(19Q13.41) MUTATED DEL PEAK 25(19Q13.41) WILD-TYPE 
                              9                              63 
  DEL PEAK 25(19Q13.41) MUTATED DEL PEAK 25(19Q13.41) WILD-TYPE 
                              9                              63 
[1] "DEL PEAK 26(21Q21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 26(21Q21.1) MUTATED DEL PEAK 26(21Q21.1) WILD-TYPE 
                            25                             47 
  DEL PEAK 26(21Q21.1) MUTATED DEL PEAK 26(21Q21.1) WILD-TYPE 
                            25                             47 
[1] "DEL PEAK 27(22Q13.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 27(22Q13.31) MUTATED DEL PEAK 27(22Q13.31) WILD-TYPE 
                             20                              52 
  DEL PEAK 27(22Q13.31) MUTATED DEL PEAK 27(22Q13.31) WILD-TYPE 
                             20                              52 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection="
 [1] "YEARSTOBIRTH"                          
 [2] "VITALSTATUS"                           
 [3] "DAYSTODEATH"                           
 [4] "DAYSTOLASTFOLLOWUP"                    
 [5] "PRIMARYSITEOFDESEASE"                  
 [6] "NEOPLASM.DISEASESTAGE"                 
 [7] "PATHOLOGY.T.STAGE"                     
 [8] "PATHOLOGY.N.STAGE"                     
 [9] "PATHOLOGY.M.STAGE"                     
[10] "DCCUPLOADDATE"                         
[11] "GENDER"                                
[12] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
[13] "RADIATIONTHERAPY"                      
[14] "HISTOLOGICALTYPE"                      
[15] "RADIATIONS.RADIATION.REGIMENINDICATION"
[16] "NUMBERPACKYEARSSMOKED"                 
[17] "YEAROFTOBACCOSMOKINGONSET"             
[18] "COMPLETENESS.OF.RESECTION"             
[19] "NUMBER.OF.LYMPH.NODES"                 
[20] "GLEASON_SCORE"                         
[21] "PSA_VALUE"                             
[22] "DAYS_TO_PSA"                           
[23] "BATCHNUMBER"                           

Input Data has 23 rows and 72 columns.

[1] "Batch" "23"   
[1] "Last Follow UP"
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
          NA          295          360           NA          153          586 
TCGA-FB-A4P5 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
           4          385           75            1          166           NA 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
          NA           NA          392          233          396          240 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7920 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 
          28           20           NA            4            8          369 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 
         361            8           19           24           21           NA 
TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 TCGA-HZ-8637 TCGA-HZ-8638 
          28           16            3            5           NA           91 
TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A49I TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
          23           29           NA          194           46          347 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 
          NA           NA           NA           NA           NA          476 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 
         851           NA           NA           NA           NA           NA 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO 
         488           NA           NA           17          522          329 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX 
         300           NA           NA            8           NA          127 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
         110          247          416           NA           NA           NA 
Variable 1:'AGE':	nDistinctValues=34,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 3:'DAYSTODEATH':	nDistinctValues=29,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'DAYSTOLASTFOLLOWUP':	nDistinctValues=42,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 5:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'NEOPLASM.DISEASESTAGE':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'PATHOLOGY.T.STAGE':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'PATHOLOGY.N.STAGE':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'PATHOLOGY.M.STAGE':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'DCCUPLOADDAY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 11:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=7,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 13:'RADIATION.THERAPY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 14:'HISTOLOGICAL.TYPE':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 15:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 16:'NUMBERPACKYEARSSMOKED':	nDistinctValues=13,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 17:'YEAROFTOBACCOSMOKINGONSET':	nDistinctValues=16,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 18:'COMPLETENESS.OF.RESECTION':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 19:'NUMBER.OF.LYMPH.NODES':	nDistinctValues=13,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 20:'GLEASON_SCORE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 21:'PSA_VALUE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 22:'DAYS_TO_PSA':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 23:'BATCH.NUMBER':	nDistinctValues=8,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
 [1] "AGE"                       "NEOPLASM.DISEASESTAGE"    
 [3] "PATHOLOGY.T.STAGE"         "PATHOLOGY.N.STAGE"        
 [5] "PATHOLOGY.M.STAGE"         "GENDER"                   
 [7] "HISTOLOGICAL.TYPE"         "NUMBERPACKYEARSSMOKED"    
 [9] "YEAROFTOBACCOSMOKINGONSET" "COMPLETENESS.OF.RESECTION"
[11] "NUMBER.OF.LYMPH.NODES"    
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T" "3"          
[1] "PATHOLOGY.N" "4"          
Output Data has 72 columns, 1 survival variables, and 11 non-survival variables.
AGE, nv=34, binary=FALSE, numeric=TRUE
NEOPLASM.DISEASESTAGE, nv=6, binary=FALSE, numeric=FALSE
PATHOLOGY.T.STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.T',vnm)"
vv
T1 T2 T3 T4 
 2  5 63  2 
[1] "table(vv)"
vv
T1+T2 T3+T4 
    7    65 
$ClinVariableName
[1] "PATHOLOGY.T.STAGE"

$Table
vv
T1 T2 T3 T4 
 2  5 63  2 

$ClinVariableType
[1] "binary"

$Class0_nSamples
[1] 7

$Class1_nSamples
[1] 65

$Class0_label
[1] "T1+T2"

$Class1_label
[1] "T3+T4"


T1+T2 T3+T4 
    7    65 
PATHOLOGY.N.STAGE, nv=2, binary=FALSE, numeric=TRUE
PATHOLOGY.M.STAGE, nv=3, binary=FALSE, numeric=FALSE
GENDER, nv=2, binary=FALSE, numeric=FALSE
HISTOLOGICAL.TYPE, nv=3, binary=FALSE, numeric=FALSE
NUMBERPACKYEARSSMOKED, nv=13, binary=FALSE, numeric=TRUE
YEAROFTOBACCOSMOKINGONSET, nv=16, binary=FALSE, numeric=TRUE
COMPLETENESS.OF.RESECTION, nv=3, binary=FALSE, numeric=FALSE
NUMBER.OF.LYMPH.NODES, nv=13, binary=FALSE, numeric=TRUE

Clustering(1) Variable = AMP PEAK  1(1P34.2) MUTATION ANALYSIS
D1V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  1(1P34.2) MUTATED    2  1
  AMP PEAK  1(1P34.2) WILD-TYPE 38 28
  AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE 
                            3                            66 
  AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE 
                            1                            28 
$`AMP PEAK  1(1P34.2) MUTATED`
TCGA-FZ-5923 TCGA-HZ-7289 TCGA-HZ-7925 
       20.81         7.89        11.87 

$`AMP PEAK  1(1P34.2) WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
        0.13        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7918 TCGA-HZ-7919 
       36.20        12.89         7.66        13.02         0.92         0.66 
TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 
        0.13         0.26        12.13         0.26         0.62         0.79 
TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 
        0.69         3.95         0.92         0.53         0.10         0.16 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        2.99         0.76         0.95         6.38         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 
       49.38         4.77        21.90        15.35        19.82        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 
       27.98         4.04         3.62        43.79        15.81        19.66 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO 
       16.04         3.85        15.98         0.56        17.16        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX 
        9.86         7.20        15.12         0.26         1.35         4.18 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62         8.12        13.68        16.80        14.14        18.67 

  AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE 
                         7.89                          0.03 
  AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE 
                        20.81                         49.38 
  AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE 
                        11.87                          6.74 
[1] "7.9 - 20.8 (11.9)" "0.0 - 49.4 (6.7)" 
                   TCGA-F2-6879                    TCGA-F2-6880 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-FB-A5VM                    TCGA-FB-A78T 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-FB-A7DR                    TCGA-FZ-5920 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-FZ-5922                    TCGA-FZ-5923 
"AMP PEAK  1(1P34.2) WILD-TYPE"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-H8-A6C1                    TCGA-HZ-7289 
"AMP PEAK  1(1P34.2) WILD-TYPE"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-HZ-7918                    TCGA-HZ-7919 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-7922                    TCGA-HZ-7923 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-7924                    TCGA-HZ-7925 
"AMP PEAK  1(1P34.2) WILD-TYPE"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-HZ-7926                    TCGA-HZ-8001 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-8002                    TCGA-HZ-8003 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-8005                    TCGA-HZ-8315 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-8317                    TCGA-HZ-8519 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-8636                    TCGA-HZ-8638 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-A49G                    TCGA-HZ-A49H 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-A4BH                    TCGA-HZ-A4BK 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-7644                    TCGA-IB-7645 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-7646                    TCGA-IB-7647 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-7649                    TCGA-IB-7651 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-7652                    TCGA-IB-7885 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-7886                    TCGA-IB-7887 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-7888                    TCGA-IB-7889 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-7890                    TCGA-IB-7891 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-7893                    TCGA-IB-7897 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-8126                    TCGA-IB-8127 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-A5SO                    TCGA-IB-A5SP 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-A5SQ                    TCGA-IB-A5SS 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-A5ST                    TCGA-IB-A6UG 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-LB-A7SX                    TCGA-OE-A75W 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-PZ-A5RE                    TCGA-Q3-A5QY 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-US-A779                    TCGA-US-A77E 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-US-A77J 
"AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-F2-6879                    TCGA-F2-6880 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-FB-A5VM                    TCGA-FB-A78T 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-FB-A7DR                    TCGA-FZ-5920 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-FZ-5922                    TCGA-FZ-5923 
"AMP PEAK  1(1P34.2) WILD-TYPE"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-H8-A6C1                    TCGA-HZ-7289 
"AMP PEAK  1(1P34.2) WILD-TYPE"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-HZ-7918                    TCGA-HZ-7919 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-7922                    TCGA-HZ-7923 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-7924                    TCGA-HZ-7925 
"AMP PEAK  1(1P34.2) WILD-TYPE"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-HZ-7926                    TCGA-HZ-8001 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-8002                    TCGA-HZ-8003 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-8005                    TCGA-HZ-8315 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-8317                    TCGA-HZ-8519 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-8636                    TCGA-HZ-8638 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-A49G                    TCGA-HZ-A49H 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-A4BH                    TCGA-HZ-A4BK 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-7644                    TCGA-IB-7645 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-7646                    TCGA-IB-7647 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-7649                    TCGA-IB-7651 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-7652                    TCGA-IB-7885 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-7886                    TCGA-IB-7887 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-7888                    TCGA-IB-7889 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-7890                    TCGA-IB-7891 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-7893                    TCGA-IB-7897 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-8126                    TCGA-IB-8127 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-A5SO                    TCGA-IB-A5SP 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-A5SQ                    TCGA-IB-A5SS 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-A5ST                    TCGA-IB-A6UG 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-LB-A7SX                    TCGA-OE-A75W 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-PZ-A5RE                    TCGA-Q3-A5QY 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-US-A779                    TCGA-US-A77E 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-US-A77J 
"AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-F2-6879                    TCGA-F2-6880 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-FB-A5VM                    TCGA-FB-A78T 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-FB-A7DR                    TCGA-FZ-5920 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-FZ-5922                    TCGA-FZ-5923 
"AMP PEAK  1(1P34.2) WILD-TYPE"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-H8-A6C1                    TCGA-HZ-7289 
"AMP PEAK  1(1P34.2) WILD-TYPE"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-HZ-7918                    TCGA-HZ-7919 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-7922                    TCGA-HZ-7923 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-7924                    TCGA-HZ-7925 
"AMP PEAK  1(1P34.2) WILD-TYPE"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-HZ-7926                    TCGA-HZ-8001 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-8002                    TCGA-HZ-8003 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-8005                    TCGA-HZ-8315 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-8317                    TCGA-HZ-8519 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-8636                    TCGA-HZ-8638 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-A49G                    TCGA-HZ-A49H 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-A4BH                    TCGA-HZ-A4BK 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-7644                    TCGA-IB-7645 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-7646                    TCGA-IB-7647 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-7649                    TCGA-IB-7651 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-7652                    TCGA-IB-7885 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-7886                    TCGA-IB-7887 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-7888                    TCGA-IB-7889 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-7890                    TCGA-IB-7891 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-7893                    TCGA-IB-7897 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-8126                    TCGA-IB-8127 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-A5SO                    TCGA-IB-A5SP 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-A5SQ                    TCGA-IB-A5SS 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-A5ST                    TCGA-IB-A6UG 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-LB-A7SX                    TCGA-OE-A75W 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-PZ-A5RE                    TCGA-Q3-A5QY 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-US-A779                    TCGA-US-A77E 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-US-A77J 
"AMP PEAK  1(1P34.2) WILD-TYPE" 
[1] "hr=" "2.1"
D1V2, continuous
                               vv
clus                            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III
  AMP PEAK  1(1P34.2) MUTATED          0        0         0         3         0
  AMP PEAK  1(1P34.2) WILD-TYPE        2        4        11        47         2
                               vv
clus                            STAGE IV
  AMP PEAK  1(1P34.2) MUTATED          1
  AMP PEAK  1(1P34.2) WILD-TYPE        2
D1V3, multiclass
                               vv
clus                            T1+T2 T3+T4
  AMP PEAK  1(1P34.2) MUTATED       0     4
  AMP PEAK  1(1P34.2) WILD-TYPE     7    61
D1V4, multiclass
       clus
vv      AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE
  T1+T2                           0                             7
  T3+T4                           4                            61
D1V5, binary
                               cls
clus                             0  1
  AMP PEAK  1(1P34.2) MUTATED    0  4
  AMP PEAK  1(1P34.2) WILD-TYPE 18 49
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  1(1P34.2) MUTATED      0    4
  AMP PEAK  1(1P34.2) WILD-TYPE   18   49
   clus
vv  AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE
  0                           0                            18
  1                           4                            49
                               vv
clus                            M0 M1 MX
  AMP PEAK  1(1P34.2) MUTATED    0  1  3
  AMP PEAK  1(1P34.2) WILD-TYPE 39  2 27
D1V6, multiclass
    clus
vv   AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE
  M0                           0                            39
  M1                           1                             2
  MX                           3                            27
D1V7, binary
                               cls
clus                             0  1
  AMP PEAK  1(1P34.2) MUTATED    1  3
  AMP PEAK  1(1P34.2) WILD-TYPE 35 33
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  1(1P34.2) MUTATED      1    3
  AMP PEAK  1(1P34.2) WILD-TYPE   35   33
        clus
vv       AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE
  FEMALE                           1                            35
  MALE                             3                            33
                               vv
clus                            PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  AMP PEAK  1(1P34.2) MUTATED                                     3
  AMP PEAK  1(1P34.2) WILD-TYPE                                  61
                               vv
clus                            PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  AMP PEAK  1(1P34.2) MUTATED                                       1
  AMP PEAK  1(1P34.2) WILD-TYPE                                     4
                               vv
clus                            PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  AMP PEAK  1(1P34.2) MUTATED                                                  0
  AMP PEAK  1(1P34.2) WILD-TYPE                                                2
D1V8, multiclass
                                                  clus
vv                                                 AMP PEAK  1(1P34.2) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                        3
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                      1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                           0
                                                  clus
vv                                                 AMP PEAK  1(1P34.2) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                         61
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                        4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                             2
D1V9, continuous
D1V10, continuous
                               vv
clus                            R0 R1 RX
  AMP PEAK  1(1P34.2) MUTATED    3  0  1
  AMP PEAK  1(1P34.2) WILD-TYPE 40 24  1
D1V11, multiclass
    clus
vv   AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE
  R0                           3                            40
  R1                           0                            24
  RX                           1                             1
D1V12, continuous

Clustering(2) Variable = AMP PEAK  2(1P12) MUTATION ANALYSIS
D2V1, survival
                             sevent
clus2                          0  1
  AMP PEAK  2(1P12) MUTATED    3  6
  AMP PEAK  2(1P12) WILD-TYPE 37 23
  AMP PEAK  2(1P12) MUTATED AMP PEAK  2(1P12) WILD-TYPE 
                          9                          60 
  AMP PEAK  2(1P12) MUTATED AMP PEAK  2(1P12) WILD-TYPE 
                          6                          23 
$`AMP PEAK  2(1P12) MUTATED`
TCGA-FB-A78T TCGA-FZ-5920 TCGA-FZ-5923 TCGA-HZ-7925 TCGA-HZ-8636 TCGA-IB-7645 
        0.03         2.01        20.81        11.87         0.16        49.38 
TCGA-IB-7889 TCGA-IB-7893 TCGA-IB-A6UG 
       15.81         3.85         1.35 

$`AMP PEAK  2(1P12) WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A7DR TCGA-FZ-5922 TCGA-H6-8124 
        0.13        12.66         2.47         5.46        36.20        12.89 
TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 
        7.66        13.02         7.89         0.92         0.66         0.13 
TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 
        0.26        12.13         0.26         0.62         0.79         0.69 
TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8638 TCGA-HZ-A49G 
        3.95         0.92         0.53         0.10         2.99         0.76 
TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7646 TCGA-IB-7647 
        0.95         6.38         1.51        11.41         4.77        21.90 
TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 
       15.35        19.82        15.65        27.98         4.04         3.62 
TCGA-IB-7888 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 
       43.79        19.66        16.04        15.98         0.56        17.16 
TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-LB-A7SX 
       10.82         9.86         7.20        15.12         0.26         4.18 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62         8.12        13.68        16.80        14.14        18.67 

  AMP PEAK  2(1P12) MUTATED AMP PEAK  2(1P12) WILD-TYPE 
                       0.03                        0.10 
  AMP PEAK  2(1P12) MUTATED AMP PEAK  2(1P12) WILD-TYPE 
                      49.38                       43.79 
  AMP PEAK  2(1P12) MUTATED AMP PEAK  2(1P12) WILD-TYPE 
                       3.85                        7.43 
[1] "0.0 - 49.4 (3.9)" "0.1 - 43.8 (7.4)"
                 TCGA-F2-6879                  TCGA-F2-6880 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-F2-7273                  TCGA-F2-7276 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-F2-A44G                  TCGA-F2-A44H 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-FB-A4P5                  TCGA-FB-A545 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-FB-A5VM                  TCGA-FB-A78T 
"AMP PEAK  2(1P12) WILD-TYPE"   "AMP PEAK  2(1P12) MUTATED" 
                 TCGA-FB-A7DR                  TCGA-FZ-5920 
"AMP PEAK  2(1P12) WILD-TYPE"   "AMP PEAK  2(1P12) MUTATED" 
                 TCGA-FZ-5922                  TCGA-FZ-5923 
"AMP PEAK  2(1P12) WILD-TYPE"   "AMP PEAK  2(1P12) MUTATED" 
                 TCGA-H6-8124                  TCGA-H6-A45N 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-H8-A6C1                  TCGA-HZ-7289 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-7918                  TCGA-HZ-7919 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-7922                  TCGA-HZ-7923 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-7924                  TCGA-HZ-7925 
"AMP PEAK  2(1P12) WILD-TYPE"   "AMP PEAK  2(1P12) MUTATED" 
                 TCGA-HZ-7926                  TCGA-HZ-8001 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-8002                  TCGA-HZ-8003 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-8005                  TCGA-HZ-8315 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-8317                  TCGA-HZ-8519 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-8636                  TCGA-HZ-8638 
  "AMP PEAK  2(1P12) MUTATED" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-A49G                  TCGA-HZ-A49H 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-A4BH                  TCGA-HZ-A4BK 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-IB-7644                  TCGA-IB-7645 
"AMP PEAK  2(1P12) WILD-TYPE"   "AMP PEAK  2(1P12) MUTATED" 
                 TCGA-IB-7646                  TCGA-IB-7647 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-IB-7649                  TCGA-IB-7651 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-IB-7652                  TCGA-IB-7885 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-IB-7886                  TCGA-IB-7887 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-IB-7888                  TCGA-IB-7889 
"AMP PEAK  2(1P12) WILD-TYPE"   "AMP PEAK  2(1P12) MUTATED" 
                 TCGA-IB-7890                  TCGA-IB-7891 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-IB-7893                  TCGA-IB-7897 
  "AMP PEAK  2(1P12) MUTATED" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-IB-8126                  TCGA-IB-8127 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-IB-A5SO                  TCGA-IB-A5SP 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-IB-A5SQ                  TCGA-IB-A5SS 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-IB-A5ST                  TCGA-IB-A6UG 
"AMP PEAK  2(1P12) WILD-TYPE"   "AMP PEAK  2(1P12) MUTATED" 
                 TCGA-LB-A7SX                  TCGA-OE-A75W 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-PZ-A5RE                  TCGA-Q3-A5QY 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-US-A779                  TCGA-US-A77E 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-US-A77J 
"AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-F2-6879                  TCGA-F2-6880 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-F2-7273                  TCGA-F2-7276 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-F2-A44G                  TCGA-F2-A44H 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-FB-A4P5                  TCGA-FB-A545 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-FB-A5VM                  TCGA-FB-A78T 
"AMP PEAK  2(1P12) WILD-TYPE"   "AMP PEAK  2(1P12) MUTATED" 
                 TCGA-FB-A7DR                  TCGA-FZ-5920 
"AMP PEAK  2(1P12) WILD-TYPE"   "AMP PEAK  2(1P12) MUTATED" 
                 TCGA-FZ-5922                  TCGA-FZ-5923 
"AMP PEAK  2(1P12) WILD-TYPE"   "AMP PEAK  2(1P12) MUTATED" 
                 TCGA-H6-8124                  TCGA-H6-A45N 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-H8-A6C1                  TCGA-HZ-7289 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-7918                  TCGA-HZ-7919 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-7922                  TCGA-HZ-7923 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-7924                  TCGA-HZ-7925 
"AMP PEAK  2(1P12) WILD-TYPE"   "AMP PEAK  2(1P12) MUTATED" 
                 TCGA-HZ-7926                  TCGA-HZ-8001 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-8002                  TCGA-HZ-8003 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-8005                  TCGA-HZ-8315 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-8317                  TCGA-HZ-8519 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-8636                  TCGA-HZ-8638 
  "AMP PEAK  2(1P12) MUTATED" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-A49G                  TCGA-HZ-A49H 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-A4BH                  TCGA-HZ-A4BK 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-IB-7644                  TCGA-IB-7645 
"AMP PEAK  2(1P12) WILD-TYPE"   "AMP PEAK  2(1P12) MUTATED" 
                 TCGA-IB-7646                  TCGA-IB-7647 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-IB-7649                  TCGA-IB-7651 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-IB-7652                  TCGA-IB-7885 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-IB-7886                  TCGA-IB-7887 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-IB-7888                  TCGA-IB-7889 
"AMP PEAK  2(1P12) WILD-TYPE"   "AMP PEAK  2(1P12) MUTATED" 
                 TCGA-IB-7890                  TCGA-IB-7891 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-IB-7893                  TCGA-IB-7897 
  "AMP PEAK  2(1P12) MUTATED" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-IB-8126                  TCGA-IB-8127 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-IB-A5SO                  TCGA-IB-A5SP 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-IB-A5SQ                  TCGA-IB-A5SS 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-IB-A5ST                  TCGA-IB-A6UG 
"AMP PEAK  2(1P12) WILD-TYPE"   "AMP PEAK  2(1P12) MUTATED" 
                 TCGA-LB-A7SX                  TCGA-OE-A75W 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-PZ-A5RE                  TCGA-Q3-A5QY 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-US-A779                  TCGA-US-A77E 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-US-A77J 
"AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-F2-6879                  TCGA-F2-6880 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-F2-7273                  TCGA-F2-7276 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-F2-A44G                  TCGA-F2-A44H 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-FB-A4P5                  TCGA-FB-A545 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-FB-A5VM                  TCGA-FB-A78T 
"AMP PEAK  2(1P12) WILD-TYPE"   "AMP PEAK  2(1P12) MUTATED" 
                 TCGA-FB-A7DR                  TCGA-FZ-5920 
"AMP PEAK  2(1P12) WILD-TYPE"   "AMP PEAK  2(1P12) MUTATED" 
                 TCGA-FZ-5922                  TCGA-FZ-5923 
"AMP PEAK  2(1P12) WILD-TYPE"   "AMP PEAK  2(1P12) MUTATED" 
                 TCGA-H6-8124                  TCGA-H6-A45N 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-H8-A6C1                  TCGA-HZ-7289 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-7918                  TCGA-HZ-7919 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-7922                  TCGA-HZ-7923 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-7924                  TCGA-HZ-7925 
"AMP PEAK  2(1P12) WILD-TYPE"   "AMP PEAK  2(1P12) MUTATED" 
                 TCGA-HZ-7926                  TCGA-HZ-8001 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-8002                  TCGA-HZ-8003 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-8005                  TCGA-HZ-8315 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-8317                  TCGA-HZ-8519 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-8636                  TCGA-HZ-8638 
  "AMP PEAK  2(1P12) MUTATED" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-A49G                  TCGA-HZ-A49H 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-A4BH                  TCGA-HZ-A4BK 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-IB-7644                  TCGA-IB-7645 
"AMP PEAK  2(1P12) WILD-TYPE"   "AMP PEAK  2(1P12) MUTATED" 
                 TCGA-IB-7646                  TCGA-IB-7647 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-IB-7649                  TCGA-IB-7651 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-IB-7652                  TCGA-IB-7885 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-IB-7886                  TCGA-IB-7887 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-IB-7888                  TCGA-IB-7889 
"AMP PEAK  2(1P12) WILD-TYPE"   "AMP PEAK  2(1P12) MUTATED" 
                 TCGA-IB-7890                  TCGA-IB-7891 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-IB-7893                  TCGA-IB-7897 
  "AMP PEAK  2(1P12) MUTATED" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-IB-8126                  TCGA-IB-8127 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-IB-A5SO                  TCGA-IB-A5SP 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-IB-A5SQ                  TCGA-IB-A5SS 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-IB-A5ST                  TCGA-IB-A6UG 
"AMP PEAK  2(1P12) WILD-TYPE"   "AMP PEAK  2(1P12) MUTATED" 
                 TCGA-LB-A7SX                  TCGA-OE-A75W 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-PZ-A5RE                  TCGA-Q3-A5QY 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-US-A779                  TCGA-US-A77E 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-US-A77J 
"AMP PEAK  2(1P12) WILD-TYPE" 
[1] "hr=" "1"  
D2V2, continuous
                             vv
clus                          STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III
  AMP PEAK  2(1P12) MUTATED          0        0         1         7         0
  AMP PEAK  2(1P12) WILD-TYPE        2        4        10        43         2
                             vv
clus                          STAGE IV
  AMP PEAK  2(1P12) MUTATED          2
  AMP PEAK  2(1P12) WILD-TYPE        1
D2V3, multiclass
                             vv
clus                          T1+T2 T3+T4
  AMP PEAK  2(1P12) MUTATED       0    10
  AMP PEAK  2(1P12) WILD-TYPE     7    55
D2V4, multiclass
       clus
vv      AMP PEAK  2(1P12) MUTATED AMP PEAK  2(1P12) WILD-TYPE
  T1+T2                         0                           7
  T3+T4                        10                          55
D2V5, binary
                             cls
clus                           0  1
  AMP PEAK  2(1P12) MUTATED    2  8
  AMP PEAK  2(1P12) WILD-TYPE 16 45
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  2(1P12) MUTATED      2    8
  AMP PEAK  2(1P12) WILD-TYPE   16   45
   clus
vv  AMP PEAK  2(1P12) MUTATED AMP PEAK  2(1P12) WILD-TYPE
  0                         2                          16
  1                         8                          45
                             vv
clus                          M0 M1 MX
  AMP PEAK  2(1P12) MUTATED    6  2  2
  AMP PEAK  2(1P12) WILD-TYPE 33  1 28
D2V6, multiclass
    clus
vv   AMP PEAK  2(1P12) MUTATED AMP PEAK  2(1P12) WILD-TYPE
  M0                         6                          33
  M1                         2                           1
  MX                         2                          28
D2V7, binary
                             cls
clus                           0  1
  AMP PEAK  2(1P12) MUTATED    5  5
  AMP PEAK  2(1P12) WILD-TYPE 31 31
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  2(1P12) MUTATED      5    5
  AMP PEAK  2(1P12) WILD-TYPE   31   31
        clus
vv       AMP PEAK  2(1P12) MUTATED AMP PEAK  2(1P12) WILD-TYPE
  FEMALE                         5                          31
  MALE                           5                          31
                             vv
clus                          PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  AMP PEAK  2(1P12) MUTATED                                    10
  AMP PEAK  2(1P12) WILD-TYPE                                  54
                             vv
clus                          PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  AMP PEAK  2(1P12) MUTATED                                       0
  AMP PEAK  2(1P12) WILD-TYPE                                     5
                             vv
clus                          PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  AMP PEAK  2(1P12) MUTATED                                                  0
  AMP PEAK  2(1P12) WILD-TYPE                                                2
D2V8, multiclass
                                                  clus
vv                                                 AMP PEAK  2(1P12) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                     10
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                    0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                         0
                                                  clus
vv                                                 AMP PEAK  2(1P12) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                       54
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                      5
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                           2
D2V9, continuous
[1] "Remove cluster labels:"    "AMP PEAK  2(1P12) MUTATED"
clus
  AMP PEAK  2(1P12) MUTATED AMP PEAK  2(1P12) WILD-TYPE 
                          2                          19 
                 TCGA-F2-6880                  TCGA-FB-A4P5 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-FB-A5VM                  TCGA-FB-A7DR 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-H6-8124                  TCGA-H6-A45N 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-H8-A6C1                  TCGA-IB-7644 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-IB-7649                  TCGA-IB-7651 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-IB-7885                  TCGA-IB-7886 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-IB-7887                  TCGA-IB-7891 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-IB-8126                  TCGA-IB-8127 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-IB-A5SS                  TCGA-LB-A7SX 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-OE-A75W 
"AMP PEAK  2(1P12) WILD-TYPE" 
D2V10, continuous
[1] "Remove cluster labels:"    "AMP PEAK  2(1P12) MUTATED"
clus
  AMP PEAK  2(1P12) MUTATED AMP PEAK  2(1P12) WILD-TYPE 
                          2                          16 
                 TCGA-FB-A4P5                  TCGA-FB-A5VM 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-FB-A7DR                  TCGA-H6-8124 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-H8-A6C1                  TCGA-IB-7644 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-IB-7649                  TCGA-IB-7651 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-IB-7885                  TCGA-IB-7886 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-IB-7891                  TCGA-IB-8126 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-IB-8127                  TCGA-IB-A5SS 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-LB-A7SX                  TCGA-OE-A75W 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                             vv
clus                          R0 R1 RX
  AMP PEAK  2(1P12) MUTATED    8  2  0
  AMP PEAK  2(1P12) WILD-TYPE 35 22  2
D2V11, multiclass
    clus
vv   AMP PEAK  2(1P12) MUTATED AMP PEAK  2(1P12) WILD-TYPE
  R0                         8                          35
  R1                         2                          22
  RX                         0                           2
D2V12, continuous

Clustering(3) Variable = AMP PEAK  3(7Q22.1) MUTATION ANALYSIS
D3V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  3(7Q22.1) MUTATED   11  8
  AMP PEAK  3(7Q22.1) WILD-TYPE 29 21
  AMP PEAK  3(7Q22.1) MUTATED AMP PEAK  3(7Q22.1) WILD-TYPE 
                           19                            50 
  AMP PEAK  3(7Q22.1) MUTATED AMP PEAK  3(7Q22.1) WILD-TYPE 
                            8                            21 
$`AMP PEAK  3(7Q22.1) MUTATED`
TCGA-FB-A545 TCGA-FZ-5923 TCGA-H6-8124 TCGA-HZ-7289 TCGA-HZ-7926 TCGA-HZ-8005 
       12.66        20.81        12.89         7.89         0.26         3.95 
TCGA-HZ-8636 TCGA-HZ-A4BH TCGA-IB-7645 TCGA-IB-7652 TCGA-IB-7886 TCGA-IB-7889 
        0.16         6.38        49.38        15.65         4.04        15.81 
TCGA-IB-7893 TCGA-IB-8127 TCGA-IB-A5SP TCGA-IB-A6UG TCGA-LB-A7SX TCGA-PZ-A5RE 
        3.85        17.16         9.86         1.35         4.18         8.12 
TCGA-US-A77E 
       14.14 

$`AMP PEAK  3(7Q22.1) WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 
        0.13         2.47         0.03         5.46         2.01        36.20 
TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 
        7.66        13.02         0.92         0.66         0.13         0.26 
TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8315 
       12.13        11.87         0.62         0.79         0.69         0.92 
TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BK 
        0.53         0.10         2.99         0.76         0.95         1.51 
TCGA-IB-7644 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7885 
       11.41         4.77        21.90        15.35        19.82        27.98 
TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7897 TCGA-IB-8126 
        3.62        43.79        19.66        16.04        15.98         0.56 
TCGA-IB-A5SO TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-OE-A75W TCGA-Q3-A5QY 
       10.82         7.20        15.12         0.26         3.62        13.68 
TCGA-US-A779 TCGA-US-A77J 
       16.80        18.67 

  AMP PEAK  3(7Q22.1) MUTATED AMP PEAK  3(7Q22.1) WILD-TYPE 
                         0.16                          0.03 
  AMP PEAK  3(7Q22.1) MUTATED AMP PEAK  3(7Q22.1) WILD-TYPE 
                        49.38                         43.79 
  AMP PEAK  3(7Q22.1) MUTATED AMP PEAK  3(7Q22.1) WILD-TYPE 
                         8.12                          6.28 
[1] "0.2 - 49.4 (8.1)" "0.0 - 43.8 (6.3)"
                   TCGA-F2-6879                    TCGA-F2-6880 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"AMP PEAK  3(7Q22.1) WILD-TYPE"   "AMP PEAK  3(7Q22.1) MUTATED" 
                   TCGA-FB-A5VM                    TCGA-FB-A78T 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-FB-A7DR                    TCGA-FZ-5920 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-FZ-5922                    TCGA-FZ-5923 
"AMP PEAK  3(7Q22.1) WILD-TYPE"   "AMP PEAK  3(7Q22.1) MUTATED" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
  "AMP PEAK  3(7Q22.1) MUTATED" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-H8-A6C1                    TCGA-HZ-7289 
"AMP PEAK  3(7Q22.1) WILD-TYPE"   "AMP PEAK  3(7Q22.1) MUTATED" 
                   TCGA-HZ-7918                    TCGA-HZ-7919 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-HZ-7922                    TCGA-HZ-7923 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-HZ-7924                    TCGA-HZ-7925 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-HZ-7926                    TCGA-HZ-8001 
  "AMP PEAK  3(7Q22.1) MUTATED" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-HZ-8002                    TCGA-HZ-8003 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-HZ-8005                    TCGA-HZ-8315 
  "AMP PEAK  3(7Q22.1) MUTATED" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-HZ-8317                    TCGA-HZ-8519 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-HZ-8636                    TCGA-HZ-8638 
  "AMP PEAK  3(7Q22.1) MUTATED" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-HZ-A49G                    TCGA-HZ-A49H 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-HZ-A4BH                    TCGA-HZ-A4BK 
  "AMP PEAK  3(7Q22.1) MUTATED" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-IB-7644                    TCGA-IB-7645 
"AMP PEAK  3(7Q22.1) WILD-TYPE"   "AMP PEAK  3(7Q22.1) MUTATED" 
                   TCGA-IB-7646                    TCGA-IB-7647 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-IB-7649                    TCGA-IB-7651 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-IB-7652                    TCGA-IB-7885 
  "AMP PEAK  3(7Q22.1) MUTATED" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-IB-7886                    TCGA-IB-7887 
  "AMP PEAK  3(7Q22.1) MUTATED" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-IB-7888                    TCGA-IB-7889 
"AMP PEAK  3(7Q22.1) WILD-TYPE"   "AMP PEAK  3(7Q22.1) MUTATED" 
                   TCGA-IB-7890                    TCGA-IB-7891 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-IB-7893                    TCGA-IB-7897 
  "AMP PEAK  3(7Q22.1) MUTATED" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-IB-8126                    TCGA-IB-8127 
"AMP PEAK  3(7Q22.1) WILD-TYPE"   "AMP PEAK  3(7Q22.1) MUTATED" 
                   TCGA-IB-A5SO                    TCGA-IB-A5SP 
"AMP PEAK  3(7Q22.1) WILD-TYPE"   "AMP PEAK  3(7Q22.1) MUTATED" 
                   TCGA-IB-A5SQ                    TCGA-IB-A5SS 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-IB-A5ST                    TCGA-IB-A6UG 
"AMP PEAK  3(7Q22.1) WILD-TYPE"   "AMP PEAK  3(7Q22.1) MUTATED" 
                   TCGA-LB-A7SX                    TCGA-OE-A75W 
  "AMP PEAK  3(7Q22.1) MUTATED" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-PZ-A5RE                    TCGA-Q3-A5QY 
  "AMP PEAK  3(7Q22.1) MUTATED" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-US-A779                    TCGA-US-A77E 
"AMP PEAK  3(7Q22.1) WILD-TYPE"   "AMP PEAK  3(7Q22.1) MUTATED" 
                   TCGA-US-A77J 
"AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-F2-6879                    TCGA-F2-6880 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"AMP PEAK  3(7Q22.1) WILD-TYPE"   "AMP PEAK  3(7Q22.1) MUTATED" 
                   TCGA-FB-A5VM                    TCGA-FB-A78T 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-FB-A7DR                    TCGA-FZ-5920 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-FZ-5922                    TCGA-FZ-5923 
"AMP PEAK  3(7Q22.1) WILD-TYPE"   "AMP PEAK  3(7Q22.1) MUTATED" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
  "AMP PEAK  3(7Q22.1) MUTATED" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-H8-A6C1                    TCGA-HZ-7289 
"AMP PEAK  3(7Q22.1) WILD-TYPE"   "AMP PEAK  3(7Q22.1) MUTATED" 
                   TCGA-HZ-7918                    TCGA-HZ-7919 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-HZ-7922                    TCGA-HZ-7923 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-HZ-7924                    TCGA-HZ-7925 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-HZ-7926                    TCGA-HZ-8001 
  "AMP PEAK  3(7Q22.1) MUTATED" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-HZ-8002                    TCGA-HZ-8003 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-HZ-8005                    TCGA-HZ-8315 
  "AMP PEAK  3(7Q22.1) MUTATED" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-HZ-8317                    TCGA-HZ-8519 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-HZ-8636                    TCGA-HZ-8638 
  "AMP PEAK  3(7Q22.1) MUTATED" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-HZ-A49G                    TCGA-HZ-A49H 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-HZ-A4BH                    TCGA-HZ-A4BK 
  "AMP PEAK  3(7Q22.1) MUTATED" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-IB-7644                    TCGA-IB-7645 
"AMP PEAK  3(7Q22.1) WILD-TYPE"   "AMP PEAK  3(7Q22.1) MUTATED" 
                   TCGA-IB-7646                    TCGA-IB-7647 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-IB-7649                    TCGA-IB-7651 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-IB-7652                    TCGA-IB-7885 
  "AMP PEAK  3(7Q22.1) MUTATED" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-IB-7886                    TCGA-IB-7887 
  "AMP PEAK  3(7Q22.1) MUTATED" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-IB-7888                    TCGA-IB-7889 
"AMP PEAK  3(7Q22.1) WILD-TYPE"   "AMP PEAK  3(7Q22.1) MUTATED" 
                   TCGA-IB-7890                    TCGA-IB-7891 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-IB-7893                    TCGA-IB-7897 
  "AMP PEAK  3(7Q22.1) MUTATED" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-IB-8126                    TCGA-IB-8127 
"AMP PEAK  3(7Q22.1) WILD-TYPE"   "AMP PEAK  3(7Q22.1) MUTATED" 
                   TCGA-IB-A5SO                    TCGA-IB-A5SP 
"AMP PEAK  3(7Q22.1) WILD-TYPE"   "AMP PEAK  3(7Q22.1) MUTATED" 
                   TCGA-IB-A5SQ                    TCGA-IB-A5SS 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-IB-A5ST                    TCGA-IB-A6UG 
"AMP PEAK  3(7Q22.1) WILD-TYPE"   "AMP PEAK  3(7Q22.1) MUTATED" 
                   TCGA-LB-A7SX                    TCGA-OE-A75W 
  "AMP PEAK  3(7Q22.1) MUTATED" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-PZ-A5RE                    TCGA-Q3-A5QY 
  "AMP PEAK  3(7Q22.1) MUTATED" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-US-A779                    TCGA-US-A77E 
"AMP PEAK  3(7Q22.1) WILD-TYPE"   "AMP PEAK  3(7Q22.1) MUTATED" 
                   TCGA-US-A77J 
"AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-F2-6879                    TCGA-F2-6880 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"AMP PEAK  3(7Q22.1) WILD-TYPE"   "AMP PEAK  3(7Q22.1) MUTATED" 
                   TCGA-FB-A5VM                    TCGA-FB-A78T 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-FB-A7DR                    TCGA-FZ-5920 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-FZ-5922                    TCGA-FZ-5923 
"AMP PEAK  3(7Q22.1) WILD-TYPE"   "AMP PEAK  3(7Q22.1) MUTATED" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
  "AMP PEAK  3(7Q22.1) MUTATED" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-H8-A6C1                    TCGA-HZ-7289 
"AMP PEAK  3(7Q22.1) WILD-TYPE"   "AMP PEAK  3(7Q22.1) MUTATED" 
                   TCGA-HZ-7918                    TCGA-HZ-7919 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-HZ-7922                    TCGA-HZ-7923 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-HZ-7924                    TCGA-HZ-7925 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-HZ-7926                    TCGA-HZ-8001 
  "AMP PEAK  3(7Q22.1) MUTATED" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-HZ-8002                    TCGA-HZ-8003 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-HZ-8005                    TCGA-HZ-8315 
  "AMP PEAK  3(7Q22.1) MUTATED" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-HZ-8317                    TCGA-HZ-8519 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-HZ-8636                    TCGA-HZ-8638 
  "AMP PEAK  3(7Q22.1) MUTATED" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-HZ-A49G                    TCGA-HZ-A49H 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-HZ-A4BH                    TCGA-HZ-A4BK 
  "AMP PEAK  3(7Q22.1) MUTATED" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-IB-7644                    TCGA-IB-7645 
"AMP PEAK  3(7Q22.1) WILD-TYPE"   "AMP PEAK  3(7Q22.1) MUTATED" 
                   TCGA-IB-7646                    TCGA-IB-7647 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-IB-7649                    TCGA-IB-7651 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-IB-7652                    TCGA-IB-7885 
  "AMP PEAK  3(7Q22.1) MUTATED" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-IB-7886                    TCGA-IB-7887 
  "AMP PEAK  3(7Q22.1) MUTATED" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-IB-7888                    TCGA-IB-7889 
"AMP PEAK  3(7Q22.1) WILD-TYPE"   "AMP PEAK  3(7Q22.1) MUTATED" 
                   TCGA-IB-7890                    TCGA-IB-7891 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-IB-7893                    TCGA-IB-7897 
  "AMP PEAK  3(7Q22.1) MUTATED" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-IB-8126                    TCGA-IB-8127 
"AMP PEAK  3(7Q22.1) WILD-TYPE"   "AMP PEAK  3(7Q22.1) MUTATED" 
                   TCGA-IB-A5SO                    TCGA-IB-A5SP 
"AMP PEAK  3(7Q22.1) WILD-TYPE"   "AMP PEAK  3(7Q22.1) MUTATED" 
                   TCGA-IB-A5SQ                    TCGA-IB-A5SS 
"AMP PEAK  3(7Q22.1) WILD-TYPE" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-IB-A5ST                    TCGA-IB-A6UG 
"AMP PEAK  3(7Q22.1) WILD-TYPE"   "AMP PEAK  3(7Q22.1) MUTATED" 
                   TCGA-LB-A7SX                    TCGA-OE-A75W 
  "AMP PEAK  3(7Q22.1) MUTATED" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-PZ-A5RE                    TCGA-Q3-A5QY 
  "AMP PEAK  3(7Q22.1) MUTATED" "AMP PEAK  3(7Q22.1) WILD-TYPE" 
                   TCGA-US-A779                    TCGA-US-A77E 
"AMP PEAK  3(7Q22.1) WILD-TYPE"   "AMP PEAK  3(7Q22.1) MUTATED" 
                   TCGA-US-A77J 
"AMP PEAK  3(7Q22.1) WILD-TYPE" 
[1] "hr=" "1.3"
D3V2, continuous
                               vv
clus                            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III
  AMP PEAK  3(7Q22.1) MUTATED          0        0         2        15         0
  AMP PEAK  3(7Q22.1) WILD-TYPE        2        4         9        35         2
                               vv
clus                            STAGE IV
  AMP PEAK  3(7Q22.1) MUTATED          2
  AMP PEAK  3(7Q22.1) WILD-TYPE        1
D3V3, multiclass
                               vv
clus                            T1+T2 T3+T4
  AMP PEAK  3(7Q22.1) MUTATED       0    19
  AMP PEAK  3(7Q22.1) WILD-TYPE     7    46
D3V4, multiclass
       clus
vv      AMP PEAK  3(7Q22.1) MUTATED AMP PEAK  3(7Q22.1) WILD-TYPE
  T1+T2                           0                             7
  T3+T4                          19                            46
D3V5, binary
                               cls
clus                             0  1
  AMP PEAK  3(7Q22.1) MUTATED    3 16
  AMP PEAK  3(7Q22.1) WILD-TYPE 15 37
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  3(7Q22.1) MUTATED      3   16
  AMP PEAK  3(7Q22.1) WILD-TYPE   15   37
   clus
vv  AMP PEAK  3(7Q22.1) MUTATED AMP PEAK  3(7Q22.1) WILD-TYPE
  0                           3                            15
  1                          16                            37
                               vv
clus                            M0 M1 MX
  AMP PEAK  3(7Q22.1) MUTATED   10  2  7
  AMP PEAK  3(7Q22.1) WILD-TYPE 29  1 23
D3V6, multiclass
    clus
vv   AMP PEAK  3(7Q22.1) MUTATED AMP PEAK  3(7Q22.1) WILD-TYPE
  M0                          10                            29
  M1                           2                             1
  MX                           7                            23
D3V7, binary
                               cls
clus                             0  1
  AMP PEAK  3(7Q22.1) MUTATED    8 11
  AMP PEAK  3(7Q22.1) WILD-TYPE 28 25
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  3(7Q22.1) MUTATED      8   11
  AMP PEAK  3(7Q22.1) WILD-TYPE   28   25
        clus
vv       AMP PEAK  3(7Q22.1) MUTATED AMP PEAK  3(7Q22.1) WILD-TYPE
  FEMALE                           8                            28
  MALE                            11                            25
                               vv
clus                            PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  AMP PEAK  3(7Q22.1) MUTATED                                    18
  AMP PEAK  3(7Q22.1) WILD-TYPE                                  46
                               vv
clus                            PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  AMP PEAK  3(7Q22.1) MUTATED                                       1
  AMP PEAK  3(7Q22.1) WILD-TYPE                                     4
                               vv
clus                            PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  AMP PEAK  3(7Q22.1) MUTATED                                                  0
  AMP PEAK  3(7Q22.1) WILD-TYPE                                                2
D3V8, multiclass
                                                  clus
vv                                                 AMP PEAK  3(7Q22.1) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                       18
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                      1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                           0
                                                  clus
vv                                                 AMP PEAK  3(7Q22.1) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                         46
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                        4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                             2
D3V9, continuous
D3V10, continuous
                               vv
clus                            R0 R1 RX
  AMP PEAK  3(7Q22.1) MUTATED    5 10  2
  AMP PEAK  3(7Q22.1) WILD-TYPE 38 14  0
D3V11, multiclass
    clus
vv   AMP PEAK  3(7Q22.1) MUTATED AMP PEAK  3(7Q22.1) WILD-TYPE
  R0                           5                            38
  R1                          10                            14
  RX                           2                             0
D3V12, continuous

Clustering(4) Variable = AMP PEAK  4(8Q24.21) MUTATION ANALYSIS
D4V1, survival
                                sevent
clus2                             0  1
  AMP PEAK  4(8Q24.21) MUTATED   14 12
  AMP PEAK  4(8Q24.21) WILD-TYPE 26 17
  AMP PEAK  4(8Q24.21) MUTATED AMP PEAK  4(8Q24.21) WILD-TYPE 
                            26                             43 
  AMP PEAK  4(8Q24.21) MUTATED AMP PEAK  4(8Q24.21) WILD-TYPE 
                            12                             17 
$`AMP PEAK  4(8Q24.21) MUTATED`
TCGA-F2-6879 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-H8-A6C1 TCGA-HZ-7289 
       10.98        12.66         2.47         0.03        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7922 TCGA-HZ-7925 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8636 
        0.92         0.13        11.87         3.95         0.92         0.16 
TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7886 TCGA-IB-7889 
        4.77        21.90        15.35        15.65         4.04        15.81 
TCGA-IB-7890 TCGA-IB-7893 TCGA-IB-8127 TCGA-IB-A5SP TCGA-IB-A5SS TCGA-IB-A6UG 
       19.66         3.85        17.16         9.86        15.12         1.35 
TCGA-OE-A75W TCGA-US-A779 
        3.62        16.80 

$`AMP PEAK  4(8Q24.21) WILD-TYPE`
TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
        9.70        11.84         7.10         5.03        19.27         0.13 
TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N 
        5.46         2.01        36.20        20.81        12.89         7.66 
TCGA-HZ-7919 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 
        0.66         0.26        12.13         0.26         0.62         0.79 
TCGA-HZ-8003 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H 
        0.69         0.53         0.10         2.99         0.76         0.95 
TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7651 TCGA-IB-7885 
        6.38         1.51        11.41        49.38        19.82        27.98 
TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7891 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-A5SO 
        3.62        43.79        16.04        15.98         0.56        10.82 
TCGA-IB-A5SQ TCGA-IB-A5ST TCGA-LB-A7SX TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A77E 
        7.20         0.26         4.18         8.12        13.68        14.14 
TCGA-US-A77J 
       18.67 

  AMP PEAK  4(8Q24.21) MUTATED AMP PEAK  4(8Q24.21) WILD-TYPE 
                          0.03                           0.10 
  AMP PEAK  4(8Q24.21) MUTATED AMP PEAK  4(8Q24.21) WILD-TYPE 
                         21.90                          49.38 
  AMP PEAK  4(8Q24.21) MUTATED AMP PEAK  4(8Q24.21) WILD-TYPE 
                         8.875                          7.100 
[1] "0.0 - 21.9 (8.9)" "0.1 - 49.4 (7.1)"
                    TCGA-F2-6879                     TCGA-F2-6880 
  "AMP PEAK  4(8Q24.21) MUTATED" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"AMP PEAK  4(8Q24.21) WILD-TYPE" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"AMP PEAK  4(8Q24.21) WILD-TYPE" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"AMP PEAK  4(8Q24.21) WILD-TYPE"   "AMP PEAK  4(8Q24.21) MUTATED" 
                    TCGA-FB-A5VM                     TCGA-FB-A78T 
  "AMP PEAK  4(8Q24.21) MUTATED"   "AMP PEAK  4(8Q24.21) MUTATED" 
                    TCGA-FB-A7DR                     TCGA-FZ-5920 
"AMP PEAK  4(8Q24.21) WILD-TYPE" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-FZ-5922                     TCGA-FZ-5923 
"AMP PEAK  4(8Q24.21) WILD-TYPE" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"AMP PEAK  4(8Q24.21) WILD-TYPE" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-H8-A6C1                     TCGA-HZ-7289 
  "AMP PEAK  4(8Q24.21) MUTATED"   "AMP PEAK  4(8Q24.21) MUTATED" 
                    TCGA-HZ-7918                     TCGA-HZ-7919 
  "AMP PEAK  4(8Q24.21) MUTATED" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-HZ-7922                     TCGA-HZ-7923 
  "AMP PEAK  4(8Q24.21) MUTATED" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-HZ-7924                     TCGA-HZ-7925 
"AMP PEAK  4(8Q24.21) WILD-TYPE"   "AMP PEAK  4(8Q24.21) MUTATED" 
                    TCGA-HZ-7926                     TCGA-HZ-8001 
"AMP PEAK  4(8Q24.21) WILD-TYPE" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-HZ-8002                     TCGA-HZ-8003 
"AMP PEAK  4(8Q24.21) WILD-TYPE" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-HZ-8005                     TCGA-HZ-8315 
  "AMP PEAK  4(8Q24.21) MUTATED"   "AMP PEAK  4(8Q24.21) MUTATED" 
                    TCGA-HZ-8317                     TCGA-HZ-8519 
"AMP PEAK  4(8Q24.21) WILD-TYPE" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-HZ-8636                     TCGA-HZ-8638 
  "AMP PEAK  4(8Q24.21) MUTATED" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-HZ-A49G                     TCGA-HZ-A49H 
"AMP PEAK  4(8Q24.21) WILD-TYPE" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-HZ-A4BH                     TCGA-HZ-A4BK 
"AMP PEAK  4(8Q24.21) WILD-TYPE" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-IB-7644                     TCGA-IB-7645 
"AMP PEAK  4(8Q24.21) WILD-TYPE" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-IB-7646                     TCGA-IB-7647 
  "AMP PEAK  4(8Q24.21) MUTATED"   "AMP PEAK  4(8Q24.21) MUTATED" 
                    TCGA-IB-7649                     TCGA-IB-7651 
  "AMP PEAK  4(8Q24.21) MUTATED" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-IB-7652                     TCGA-IB-7885 
  "AMP PEAK  4(8Q24.21) MUTATED" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-IB-7886                     TCGA-IB-7887 
  "AMP PEAK  4(8Q24.21) MUTATED" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-IB-7888                     TCGA-IB-7889 
"AMP PEAK  4(8Q24.21) WILD-TYPE"   "AMP PEAK  4(8Q24.21) MUTATED" 
                    TCGA-IB-7890                     TCGA-IB-7891 
  "AMP PEAK  4(8Q24.21) MUTATED" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-IB-7893                     TCGA-IB-7897 
  "AMP PEAK  4(8Q24.21) MUTATED" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-IB-8126                     TCGA-IB-8127 
"AMP PEAK  4(8Q24.21) WILD-TYPE"   "AMP PEAK  4(8Q24.21) MUTATED" 
                    TCGA-IB-A5SO                     TCGA-IB-A5SP 
"AMP PEAK  4(8Q24.21) WILD-TYPE"   "AMP PEAK  4(8Q24.21) MUTATED" 
                    TCGA-IB-A5SQ                     TCGA-IB-A5SS 
"AMP PEAK  4(8Q24.21) WILD-TYPE"   "AMP PEAK  4(8Q24.21) MUTATED" 
                    TCGA-IB-A5ST                     TCGA-IB-A6UG 
"AMP PEAK  4(8Q24.21) WILD-TYPE"   "AMP PEAK  4(8Q24.21) MUTATED" 
                    TCGA-LB-A7SX                     TCGA-OE-A75W 
"AMP PEAK  4(8Q24.21) WILD-TYPE"   "AMP PEAK  4(8Q24.21) MUTATED" 
                    TCGA-PZ-A5RE                     TCGA-Q3-A5QY 
"AMP PEAK  4(8Q24.21) WILD-TYPE" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-US-A779                     TCGA-US-A77E 
  "AMP PEAK  4(8Q24.21) MUTATED" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-US-A77J 
"AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-F2-6879                     TCGA-F2-6880 
  "AMP PEAK  4(8Q24.21) MUTATED" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"AMP PEAK  4(8Q24.21) WILD-TYPE" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"AMP PEAK  4(8Q24.21) WILD-TYPE" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"AMP PEAK  4(8Q24.21) WILD-TYPE"   "AMP PEAK  4(8Q24.21) MUTATED" 
                    TCGA-FB-A5VM                     TCGA-FB-A78T 
  "AMP PEAK  4(8Q24.21) MUTATED"   "AMP PEAK  4(8Q24.21) MUTATED" 
                    TCGA-FB-A7DR                     TCGA-FZ-5920 
"AMP PEAK  4(8Q24.21) WILD-TYPE" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-FZ-5922                     TCGA-FZ-5923 
"AMP PEAK  4(8Q24.21) WILD-TYPE" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"AMP PEAK  4(8Q24.21) WILD-TYPE" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-H8-A6C1                     TCGA-HZ-7289 
  "AMP PEAK  4(8Q24.21) MUTATED"   "AMP PEAK  4(8Q24.21) MUTATED" 
                    TCGA-HZ-7918                     TCGA-HZ-7919 
  "AMP PEAK  4(8Q24.21) MUTATED" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-HZ-7922                     TCGA-HZ-7923 
  "AMP PEAK  4(8Q24.21) MUTATED" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-HZ-7924                     TCGA-HZ-7925 
"AMP PEAK  4(8Q24.21) WILD-TYPE"   "AMP PEAK  4(8Q24.21) MUTATED" 
                    TCGA-HZ-7926                     TCGA-HZ-8001 
"AMP PEAK  4(8Q24.21) WILD-TYPE" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-HZ-8002                     TCGA-HZ-8003 
"AMP PEAK  4(8Q24.21) WILD-TYPE" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-HZ-8005                     TCGA-HZ-8315 
  "AMP PEAK  4(8Q24.21) MUTATED"   "AMP PEAK  4(8Q24.21) MUTATED" 
                    TCGA-HZ-8317                     TCGA-HZ-8519 
"AMP PEAK  4(8Q24.21) WILD-TYPE" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-HZ-8636                     TCGA-HZ-8638 
  "AMP PEAK  4(8Q24.21) MUTATED" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-HZ-A49G                     TCGA-HZ-A49H 
"AMP PEAK  4(8Q24.21) WILD-TYPE" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-HZ-A4BH                     TCGA-HZ-A4BK 
"AMP PEAK  4(8Q24.21) WILD-TYPE" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-IB-7644                     TCGA-IB-7645 
"AMP PEAK  4(8Q24.21) WILD-TYPE" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-IB-7646                     TCGA-IB-7647 
  "AMP PEAK  4(8Q24.21) MUTATED"   "AMP PEAK  4(8Q24.21) MUTATED" 
                    TCGA-IB-7649                     TCGA-IB-7651 
  "AMP PEAK  4(8Q24.21) MUTATED" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-IB-7652                     TCGA-IB-7885 
  "AMP PEAK  4(8Q24.21) MUTATED" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-IB-7886                     TCGA-IB-7887 
  "AMP PEAK  4(8Q24.21) MUTATED" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-IB-7888                     TCGA-IB-7889 
"AMP PEAK  4(8Q24.21) WILD-TYPE"   "AMP PEAK  4(8Q24.21) MUTATED" 
                    TCGA-IB-7890                     TCGA-IB-7891 
  "AMP PEAK  4(8Q24.21) MUTATED" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-IB-7893                     TCGA-IB-7897 
  "AMP PEAK  4(8Q24.21) MUTATED" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-IB-8126                     TCGA-IB-8127 
"AMP PEAK  4(8Q24.21) WILD-TYPE"   "AMP PEAK  4(8Q24.21) MUTATED" 
                    TCGA-IB-A5SO                     TCGA-IB-A5SP 
"AMP PEAK  4(8Q24.21) WILD-TYPE"   "AMP PEAK  4(8Q24.21) MUTATED" 
                    TCGA-IB-A5SQ                     TCGA-IB-A5SS 
"AMP PEAK  4(8Q24.21) WILD-TYPE"   "AMP PEAK  4(8Q24.21) MUTATED" 
                    TCGA-IB-A5ST                     TCGA-IB-A6UG 
"AMP PEAK  4(8Q24.21) WILD-TYPE"   "AMP PEAK  4(8Q24.21) MUTATED" 
                    TCGA-LB-A7SX                     TCGA-OE-A75W 
"AMP PEAK  4(8Q24.21) WILD-TYPE"   "AMP PEAK  4(8Q24.21) MUTATED" 
                    TCGA-PZ-A5RE                     TCGA-Q3-A5QY 
"AMP PEAK  4(8Q24.21) WILD-TYPE" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-US-A779                     TCGA-US-A77E 
  "AMP PEAK  4(8Q24.21) MUTATED" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-US-A77J 
"AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-F2-6879                     TCGA-F2-6880 
  "AMP PEAK  4(8Q24.21) MUTATED" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"AMP PEAK  4(8Q24.21) WILD-TYPE" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"AMP PEAK  4(8Q24.21) WILD-TYPE" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"AMP PEAK  4(8Q24.21) WILD-TYPE"   "AMP PEAK  4(8Q24.21) MUTATED" 
                    TCGA-FB-A5VM                     TCGA-FB-A78T 
  "AMP PEAK  4(8Q24.21) MUTATED"   "AMP PEAK  4(8Q24.21) MUTATED" 
                    TCGA-FB-A7DR                     TCGA-FZ-5920 
"AMP PEAK  4(8Q24.21) WILD-TYPE" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-FZ-5922                     TCGA-FZ-5923 
"AMP PEAK  4(8Q24.21) WILD-TYPE" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"AMP PEAK  4(8Q24.21) WILD-TYPE" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-H8-A6C1                     TCGA-HZ-7289 
  "AMP PEAK  4(8Q24.21) MUTATED"   "AMP PEAK  4(8Q24.21) MUTATED" 
                    TCGA-HZ-7918                     TCGA-HZ-7919 
  "AMP PEAK  4(8Q24.21) MUTATED" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-HZ-7922                     TCGA-HZ-7923 
  "AMP PEAK  4(8Q24.21) MUTATED" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-HZ-7924                     TCGA-HZ-7925 
"AMP PEAK  4(8Q24.21) WILD-TYPE"   "AMP PEAK  4(8Q24.21) MUTATED" 
                    TCGA-HZ-7926                     TCGA-HZ-8001 
"AMP PEAK  4(8Q24.21) WILD-TYPE" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-HZ-8002                     TCGA-HZ-8003 
"AMP PEAK  4(8Q24.21) WILD-TYPE" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-HZ-8005                     TCGA-HZ-8315 
  "AMP PEAK  4(8Q24.21) MUTATED"   "AMP PEAK  4(8Q24.21) MUTATED" 
                    TCGA-HZ-8317                     TCGA-HZ-8519 
"AMP PEAK  4(8Q24.21) WILD-TYPE" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-HZ-8636                     TCGA-HZ-8638 
  "AMP PEAK  4(8Q24.21) MUTATED" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-HZ-A49G                     TCGA-HZ-A49H 
"AMP PEAK  4(8Q24.21) WILD-TYPE" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-HZ-A4BH                     TCGA-HZ-A4BK 
"AMP PEAK  4(8Q24.21) WILD-TYPE" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-IB-7644                     TCGA-IB-7645 
"AMP PEAK  4(8Q24.21) WILD-TYPE" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-IB-7646                     TCGA-IB-7647 
  "AMP PEAK  4(8Q24.21) MUTATED"   "AMP PEAK  4(8Q24.21) MUTATED" 
                    TCGA-IB-7649                     TCGA-IB-7651 
  "AMP PEAK  4(8Q24.21) MUTATED" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-IB-7652                     TCGA-IB-7885 
  "AMP PEAK  4(8Q24.21) MUTATED" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-IB-7886                     TCGA-IB-7887 
  "AMP PEAK  4(8Q24.21) MUTATED" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-IB-7888                     TCGA-IB-7889 
"AMP PEAK  4(8Q24.21) WILD-TYPE"   "AMP PEAK  4(8Q24.21) MUTATED" 
                    TCGA-IB-7890                     TCGA-IB-7891 
  "AMP PEAK  4(8Q24.21) MUTATED" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-IB-7893                     TCGA-IB-7897 
  "AMP PEAK  4(8Q24.21) MUTATED" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-IB-8126                     TCGA-IB-8127 
"AMP PEAK  4(8Q24.21) WILD-TYPE"   "AMP PEAK  4(8Q24.21) MUTATED" 
                    TCGA-IB-A5SO                     TCGA-IB-A5SP 
"AMP PEAK  4(8Q24.21) WILD-TYPE"   "AMP PEAK  4(8Q24.21) MUTATED" 
                    TCGA-IB-A5SQ                     TCGA-IB-A5SS 
"AMP PEAK  4(8Q24.21) WILD-TYPE"   "AMP PEAK  4(8Q24.21) MUTATED" 
                    TCGA-IB-A5ST                     TCGA-IB-A6UG 
"AMP PEAK  4(8Q24.21) WILD-TYPE"   "AMP PEAK  4(8Q24.21) MUTATED" 
                    TCGA-LB-A7SX                     TCGA-OE-A75W 
"AMP PEAK  4(8Q24.21) WILD-TYPE"   "AMP PEAK  4(8Q24.21) MUTATED" 
                    TCGA-PZ-A5RE                     TCGA-Q3-A5QY 
"AMP PEAK  4(8Q24.21) WILD-TYPE" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-US-A779                     TCGA-US-A77E 
  "AMP PEAK  4(8Q24.21) MUTATED" "AMP PEAK  4(8Q24.21) WILD-TYPE" 
                    TCGA-US-A77J 
"AMP PEAK  4(8Q24.21) WILD-TYPE" 
[1] "hr=" "1.6"
D4V2, continuous
                                vv
clus                             STAGE IA STAGE IB STAGE IIA STAGE IIB
  AMP PEAK  4(8Q24.21) MUTATED          0        2         5        19
  AMP PEAK  4(8Q24.21) WILD-TYPE        2        2         6        31
                                vv
clus                             STAGE III STAGE IV
  AMP PEAK  4(8Q24.21) MUTATED           0        1
  AMP PEAK  4(8Q24.21) WILD-TYPE         2        2
D4V3, multiclass
                                vv
clus                             T1+T2 T3+T4
  AMP PEAK  4(8Q24.21) MUTATED       2    25
  AMP PEAK  4(8Q24.21) WILD-TYPE     5    40
D4V4, multiclass
       clus
vv      AMP PEAK  4(8Q24.21) MUTATED AMP PEAK  4(8Q24.21) WILD-TYPE
  T1+T2                            2                              5
  T3+T4                           25                             40
D4V5, binary
                                cls
clus                              0  1
  AMP PEAK  4(8Q24.21) MUTATED    8 19
  AMP PEAK  4(8Q24.21) WILD-TYPE 10 34
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  4(8Q24.21) MUTATED      8   19
  AMP PEAK  4(8Q24.21) WILD-TYPE   10   34
   clus
vv  AMP PEAK  4(8Q24.21) MUTATED AMP PEAK  4(8Q24.21) WILD-TYPE
  0                            8                             10
  1                           19                             34
                                vv
clus                             M0 M1 MX
  AMP PEAK  4(8Q24.21) MUTATED   18  1  8
  AMP PEAK  4(8Q24.21) WILD-TYPE 21  2 22
D4V6, multiclass
    clus
vv   AMP PEAK  4(8Q24.21) MUTATED AMP PEAK  4(8Q24.21) WILD-TYPE
  M0                           18                             21
  M1                            1                              2
  MX                            8                             22
D4V7, binary
                                cls
clus                              0  1
  AMP PEAK  4(8Q24.21) MUTATED   12 15
  AMP PEAK  4(8Q24.21) WILD-TYPE 24 21
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  4(8Q24.21) MUTATED     12   15
  AMP PEAK  4(8Q24.21) WILD-TYPE   24   21
        clus
vv       AMP PEAK  4(8Q24.21) MUTATED AMP PEAK  4(8Q24.21) WILD-TYPE
  FEMALE                           12                             24
  MALE                             15                             21
                                vv
clus                             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  AMP PEAK  4(8Q24.21) MUTATED                                    24
  AMP PEAK  4(8Q24.21) WILD-TYPE                                  40
                                vv
clus                             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  AMP PEAK  4(8Q24.21) MUTATED                                       2
  AMP PEAK  4(8Q24.21) WILD-TYPE                                     3
                                vv
clus                             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  AMP PEAK  4(8Q24.21) MUTATED                                                  0
  AMP PEAK  4(8Q24.21) WILD-TYPE                                                2
D4V8, multiclass
                                                  clus
vv                                                 AMP PEAK  4(8Q24.21) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                        24
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                       2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                            0
                                                  clus
vv                                                 AMP PEAK  4(8Q24.21) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                          40
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                         3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                              2
D4V9, continuous
D4V10, continuous
                                vv
clus                             R0 R1 RX
  AMP PEAK  4(8Q24.21) MUTATED   14 11  1
  AMP PEAK  4(8Q24.21) WILD-TYPE 29 13  1
D4V11, multiclass
    clus
vv   AMP PEAK  4(8Q24.21) MUTATED AMP PEAK  4(8Q24.21) WILD-TYPE
  R0                           14                             29
  R1                           11                             13
  RX                            1                              1
D4V12, continuous

Clustering(5) Variable = AMP PEAK  5(9P13.3) MUTATION ANALYSIS
D5V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  5(9P13.3) MUTATED    4  4
  AMP PEAK  5(9P13.3) WILD-TYPE 36 25
  AMP PEAK  5(9P13.3) MUTATED AMP PEAK  5(9P13.3) WILD-TYPE 
                            8                            61 
  AMP PEAK  5(9P13.3) MUTATED AMP PEAK  5(9P13.3) WILD-TYPE 
                            4                            25 
$`AMP PEAK  5(9P13.3) MUTATED`
TCGA-FZ-5920 TCGA-H8-A6C1 TCGA-HZ-7925 TCGA-HZ-8636 TCGA-IB-7646 TCGA-IB-7893 
        2.01        13.02        11.87         0.16         4.77         3.85 
TCGA-IB-8126 TCGA-US-A779 
        0.56        16.80 

$`AMP PEAK  5(9P13.3) WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5922 
        0.13        12.66         2.47         0.03         5.46        36.20 
TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 
       20.81        12.89         7.66         7.89         0.92         0.66 
TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 
        0.13         0.26        12.13         0.26         0.62         0.79 
TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8638 
        0.69         3.95         0.92         0.53         0.10         2.99 
TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 
        0.76         0.95         6.38         1.51        11.41        49.38 
TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 
       21.90        15.35        19.82        15.65        27.98         4.04 
TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7897 
        3.62        43.79        15.81        19.66        16.04        15.98 
TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
       17.16        10.82         9.86         7.20        15.12         0.26 
TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A77E 
        1.35         4.18         3.62         8.12        13.68        14.14 
TCGA-US-A77J 
       18.67 

  AMP PEAK  5(9P13.3) MUTATED AMP PEAK  5(9P13.3) WILD-TYPE 
                         0.16                          0.03 
  AMP PEAK  5(9P13.3) MUTATED AMP PEAK  5(9P13.3) WILD-TYPE 
                        16.80                         49.38 
  AMP PEAK  5(9P13.3) MUTATED AMP PEAK  5(9P13.3) WILD-TYPE 
                         4.31                          7.66 
[1] "0.2 - 16.8 (4.3)" "0.0 - 49.4 (7.7)"
                   TCGA-F2-6879                    TCGA-F2-6880 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-FB-A5VM                    TCGA-FB-A78T 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-FB-A7DR                    TCGA-FZ-5920 
"AMP PEAK  5(9P13.3) WILD-TYPE"   "AMP PEAK  5(9P13.3) MUTATED" 
                   TCGA-FZ-5922                    TCGA-FZ-5923 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-H8-A6C1                    TCGA-HZ-7289 
  "AMP PEAK  5(9P13.3) MUTATED" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-HZ-7918                    TCGA-HZ-7919 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-HZ-7922                    TCGA-HZ-7923 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-HZ-7924                    TCGA-HZ-7925 
"AMP PEAK  5(9P13.3) WILD-TYPE"   "AMP PEAK  5(9P13.3) MUTATED" 
                   TCGA-HZ-7926                    TCGA-HZ-8001 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-HZ-8002                    TCGA-HZ-8003 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-HZ-8005                    TCGA-HZ-8315 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-HZ-8317                    TCGA-HZ-8519 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-HZ-8636                    TCGA-HZ-8638 
  "AMP PEAK  5(9P13.3) MUTATED" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-HZ-A49G                    TCGA-HZ-A49H 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-HZ-A4BH                    TCGA-HZ-A4BK 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-IB-7644                    TCGA-IB-7645 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-IB-7646                    TCGA-IB-7647 
  "AMP PEAK  5(9P13.3) MUTATED" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-IB-7649                    TCGA-IB-7651 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-IB-7652                    TCGA-IB-7885 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-IB-7886                    TCGA-IB-7887 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-IB-7888                    TCGA-IB-7889 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-IB-7890                    TCGA-IB-7891 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-IB-7893                    TCGA-IB-7897 
  "AMP PEAK  5(9P13.3) MUTATED" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-IB-8126                    TCGA-IB-8127 
  "AMP PEAK  5(9P13.3) MUTATED" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-IB-A5SO                    TCGA-IB-A5SP 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-IB-A5SQ                    TCGA-IB-A5SS 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-IB-A5ST                    TCGA-IB-A6UG 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-LB-A7SX                    TCGA-OE-A75W 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-PZ-A5RE                    TCGA-Q3-A5QY 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-US-A779                    TCGA-US-A77E 
  "AMP PEAK  5(9P13.3) MUTATED" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-US-A77J 
"AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-F2-6879                    TCGA-F2-6880 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-FB-A5VM                    TCGA-FB-A78T 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-FB-A7DR                    TCGA-FZ-5920 
"AMP PEAK  5(9P13.3) WILD-TYPE"   "AMP PEAK  5(9P13.3) MUTATED" 
                   TCGA-FZ-5922                    TCGA-FZ-5923 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-H8-A6C1                    TCGA-HZ-7289 
  "AMP PEAK  5(9P13.3) MUTATED" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-HZ-7918                    TCGA-HZ-7919 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-HZ-7922                    TCGA-HZ-7923 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-HZ-7924                    TCGA-HZ-7925 
"AMP PEAK  5(9P13.3) WILD-TYPE"   "AMP PEAK  5(9P13.3) MUTATED" 
                   TCGA-HZ-7926                    TCGA-HZ-8001 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-HZ-8002                    TCGA-HZ-8003 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-HZ-8005                    TCGA-HZ-8315 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-HZ-8317                    TCGA-HZ-8519 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-HZ-8636                    TCGA-HZ-8638 
  "AMP PEAK  5(9P13.3) MUTATED" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-HZ-A49G                    TCGA-HZ-A49H 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-HZ-A4BH                    TCGA-HZ-A4BK 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-IB-7644                    TCGA-IB-7645 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-IB-7646                    TCGA-IB-7647 
  "AMP PEAK  5(9P13.3) MUTATED" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-IB-7649                    TCGA-IB-7651 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-IB-7652                    TCGA-IB-7885 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-IB-7886                    TCGA-IB-7887 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-IB-7888                    TCGA-IB-7889 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-IB-7890                    TCGA-IB-7891 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-IB-7893                    TCGA-IB-7897 
  "AMP PEAK  5(9P13.3) MUTATED" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-IB-8126                    TCGA-IB-8127 
  "AMP PEAK  5(9P13.3) MUTATED" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-IB-A5SO                    TCGA-IB-A5SP 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-IB-A5SQ                    TCGA-IB-A5SS 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-IB-A5ST                    TCGA-IB-A6UG 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-LB-A7SX                    TCGA-OE-A75W 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-PZ-A5RE                    TCGA-Q3-A5QY 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-US-A779                    TCGA-US-A77E 
  "AMP PEAK  5(9P13.3) MUTATED" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-US-A77J 
"AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-F2-6879                    TCGA-F2-6880 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-FB-A5VM                    TCGA-FB-A78T 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-FB-A7DR                    TCGA-FZ-5920 
"AMP PEAK  5(9P13.3) WILD-TYPE"   "AMP PEAK  5(9P13.3) MUTATED" 
                   TCGA-FZ-5922                    TCGA-FZ-5923 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-H8-A6C1                    TCGA-HZ-7289 
  "AMP PEAK  5(9P13.3) MUTATED" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-HZ-7918                    TCGA-HZ-7919 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-HZ-7922                    TCGA-HZ-7923 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-HZ-7924                    TCGA-HZ-7925 
"AMP PEAK  5(9P13.3) WILD-TYPE"   "AMP PEAK  5(9P13.3) MUTATED" 
                   TCGA-HZ-7926                    TCGA-HZ-8001 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-HZ-8002                    TCGA-HZ-8003 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-HZ-8005                    TCGA-HZ-8315 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-HZ-8317                    TCGA-HZ-8519 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-HZ-8636                    TCGA-HZ-8638 
  "AMP PEAK  5(9P13.3) MUTATED" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-HZ-A49G                    TCGA-HZ-A49H 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-HZ-A4BH                    TCGA-HZ-A4BK 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-IB-7644                    TCGA-IB-7645 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-IB-7646                    TCGA-IB-7647 
  "AMP PEAK  5(9P13.3) MUTATED" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-IB-7649                    TCGA-IB-7651 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-IB-7652                    TCGA-IB-7885 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-IB-7886                    TCGA-IB-7887 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-IB-7888                    TCGA-IB-7889 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-IB-7890                    TCGA-IB-7891 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-IB-7893                    TCGA-IB-7897 
  "AMP PEAK  5(9P13.3) MUTATED" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-IB-8126                    TCGA-IB-8127 
  "AMP PEAK  5(9P13.3) MUTATED" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-IB-A5SO                    TCGA-IB-A5SP 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-IB-A5SQ                    TCGA-IB-A5SS 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-IB-A5ST                    TCGA-IB-A6UG 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-LB-A7SX                    TCGA-OE-A75W 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-PZ-A5RE                    TCGA-Q3-A5QY 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-US-A779                    TCGA-US-A77E 
  "AMP PEAK  5(9P13.3) MUTATED" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-US-A77J 
"AMP PEAK  5(9P13.3) WILD-TYPE" 
[1] "hr=" "2.3"
D5V2, continuous
                               vv
clus                            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III
  AMP PEAK  5(9P13.3) MUTATED          0        0         2         4         1
  AMP PEAK  5(9P13.3) WILD-TYPE        2        4         9        46         1
                               vv
clus                            STAGE IV
  AMP PEAK  5(9P13.3) MUTATED          1
  AMP PEAK  5(9P13.3) WILD-TYPE        2
D5V3, multiclass
                               vv
clus                            T1+T2 T3+T4
  AMP PEAK  5(9P13.3) MUTATED       0     8
  AMP PEAK  5(9P13.3) WILD-TYPE     7    57
D5V4, multiclass
       clus
vv      AMP PEAK  5(9P13.3) MUTATED AMP PEAK  5(9P13.3) WILD-TYPE
  T1+T2                           0                             7
  T3+T4                           8                            57
D5V5, binary
                               cls
clus                             0  1
  AMP PEAK  5(9P13.3) MUTATED    3  5
  AMP PEAK  5(9P13.3) WILD-TYPE 15 48
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  5(9P13.3) MUTATED      3    5
  AMP PEAK  5(9P13.3) WILD-TYPE   15   48
   clus
vv  AMP PEAK  5(9P13.3) MUTATED AMP PEAK  5(9P13.3) WILD-TYPE
  0                           3                            15
  1                           5                            48
                               vv
clus                            M0 M1 MX
  AMP PEAK  5(9P13.3) MUTATED    4  1  3
  AMP PEAK  5(9P13.3) WILD-TYPE 35  2 27
D5V6, multiclass
    clus
vv   AMP PEAK  5(9P13.3) MUTATED AMP PEAK  5(9P13.3) WILD-TYPE
  M0                           4                            35
  M1                           1                             2
  MX                           3                            27
D5V7, binary
                               cls
clus                             0  1
  AMP PEAK  5(9P13.3) MUTATED    3  5
  AMP PEAK  5(9P13.3) WILD-TYPE 33 31
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  5(9P13.3) MUTATED      3    5
  AMP PEAK  5(9P13.3) WILD-TYPE   33   31
        clus
vv       AMP PEAK  5(9P13.3) MUTATED AMP PEAK  5(9P13.3) WILD-TYPE
  FEMALE                           3                            33
  MALE                             5                            31
                               vv
clus                            PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  AMP PEAK  5(9P13.3) MUTATED                                     7
  AMP PEAK  5(9P13.3) WILD-TYPE                                  57
                               vv
clus                            PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  AMP PEAK  5(9P13.3) MUTATED                                       1
  AMP PEAK  5(9P13.3) WILD-TYPE                                     4
                               vv
clus                            PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  AMP PEAK  5(9P13.3) MUTATED                                                  0
  AMP PEAK  5(9P13.3) WILD-TYPE                                                2
D5V8, multiclass
                                                  clus
vv                                                 AMP PEAK  5(9P13.3) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                        7
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                      1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                           0
                                                  clus
vv                                                 AMP PEAK  5(9P13.3) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                         57
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                        4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                             2
D5V9, continuous
[1] "Remove cluster labels:"      "AMP PEAK  5(9P13.3) MUTATED"
clus
  AMP PEAK  5(9P13.3) MUTATED AMP PEAK  5(9P13.3) WILD-TYPE 
                            2                            19 
                   TCGA-F2-6880                    TCGA-FB-A4P5 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-FB-A5VM                    TCGA-FB-A78T 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-FB-A7DR                    TCGA-H6-8124 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-H6-A45N                    TCGA-IB-7644 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-IB-7649                    TCGA-IB-7651 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-IB-7887                    TCGA-IB-7891 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-IB-8127                    TCGA-IB-A5SS 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-IB-A6UG                    TCGA-LB-A7SX 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-OE-A75W 
"AMP PEAK  5(9P13.3) WILD-TYPE" 
D5V10, continuous
[1] "Remove cluster labels:"      "AMP PEAK  5(9P13.3) MUTATED"
clus
  AMP PEAK  5(9P13.3) MUTATED AMP PEAK  5(9P13.3) WILD-TYPE 
                            2                            16 
                   TCGA-FB-A4P5                    TCGA-FB-A5VM 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-FB-A78T                    TCGA-FB-A7DR 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-IB-7644 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-IB-7649                    TCGA-IB-7651 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-IB-7891                    TCGA-IB-8127 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-IB-A5SS                    TCGA-IB-A6UG 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                   TCGA-LB-A7SX                    TCGA-OE-A75W 
"AMP PEAK  5(9P13.3) WILD-TYPE" "AMP PEAK  5(9P13.3) WILD-TYPE" 
                               vv
clus                            R0 R1 RX
  AMP PEAK  5(9P13.3) MUTATED    5  3  0
  AMP PEAK  5(9P13.3) WILD-TYPE 38 21  2
D5V11, multiclass
    clus
vv   AMP PEAK  5(9P13.3) MUTATED AMP PEAK  5(9P13.3) WILD-TYPE
  R0                           5                            38
  R1                           3                            21
  RX                           0                             2
D5V12, continuous

Clustering(6) Variable = AMP PEAK  6(11P11.2) MUTATION ANALYSIS
D6V1, survival
                                sevent
clus2                             0  1
  AMP PEAK  6(11P11.2) MUTATED    3  5
  AMP PEAK  6(11P11.2) WILD-TYPE 37 24
  AMP PEAK  6(11P11.2) MUTATED AMP PEAK  6(11P11.2) WILD-TYPE 
                             8                             61 
  AMP PEAK  6(11P11.2) MUTATED AMP PEAK  6(11P11.2) WILD-TYPE 
                             5                             24 
$`AMP PEAK  6(11P11.2) MUTATED`
TCGA-FB-A545 TCGA-FZ-5920 TCGA-IB-7647 TCGA-IB-7886 TCGA-IB-7893 TCGA-IB-8127 
       12.66         2.01        21.90         4.04         3.85        17.16 
TCGA-IB-A5SP TCGA-IB-A6UG 
        9.86         1.35 

$`AMP PEAK  6(11P11.2) WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5922 TCGA-FZ-5923 
        0.13         2.47         0.03         5.46        36.20        20.81 
TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 
       12.89         7.66        13.02         7.89         0.92         0.66 
TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 
        0.13         0.26        12.13        11.87         0.26         0.62 
TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 
        0.79         0.69         3.95         0.92         0.53         0.10 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.16         2.99         0.76         0.95         6.38         1.51 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 
       11.41        49.38         4.77        15.35        19.82        15.65 
TCGA-IB-7885 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
       27.98         3.62        43.79        15.81        19.66        16.04 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-A5SO TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
       15.98         0.56        10.82         7.20        15.12         0.26 
TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E 
        4.18         3.62         8.12        13.68        16.80        14.14 
TCGA-US-A77J 
       18.67 

  AMP PEAK  6(11P11.2) MUTATED AMP PEAK  6(11P11.2) WILD-TYPE 
                          1.35                           0.03 
  AMP PEAK  6(11P11.2) MUTATED AMP PEAK  6(11P11.2) WILD-TYPE 
                         21.90                          49.38 
  AMP PEAK  6(11P11.2) MUTATED AMP PEAK  6(11P11.2) WILD-TYPE 
                          6.95                           7.20 
[1] "1.4 - 21.9 (6.9)" "0.0 - 49.4 (7.2)"
                    TCGA-F2-6879                     TCGA-F2-6880 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"AMP PEAK  6(11P11.2) WILD-TYPE"   "AMP PEAK  6(11P11.2) MUTATED" 
                    TCGA-FB-A5VM                     TCGA-FB-A78T 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-FB-A7DR                     TCGA-FZ-5920 
"AMP PEAK  6(11P11.2) WILD-TYPE"   "AMP PEAK  6(11P11.2) MUTATED" 
                    TCGA-FZ-5922                     TCGA-FZ-5923 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-H8-A6C1                     TCGA-HZ-7289 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-HZ-7918                     TCGA-HZ-7919 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-HZ-7922                     TCGA-HZ-7923 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-HZ-7924                     TCGA-HZ-7925 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-HZ-7926                     TCGA-HZ-8001 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-HZ-8002                     TCGA-HZ-8003 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-HZ-8005                     TCGA-HZ-8315 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-HZ-8317                     TCGA-HZ-8519 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-HZ-8636                     TCGA-HZ-8638 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-HZ-A49G                     TCGA-HZ-A49H 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-HZ-A4BH                     TCGA-HZ-A4BK 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-IB-7644                     TCGA-IB-7645 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-IB-7646                     TCGA-IB-7647 
"AMP PEAK  6(11P11.2) WILD-TYPE"   "AMP PEAK  6(11P11.2) MUTATED" 
                    TCGA-IB-7649                     TCGA-IB-7651 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-IB-7652                     TCGA-IB-7885 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-IB-7886                     TCGA-IB-7887 
  "AMP PEAK  6(11P11.2) MUTATED" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-IB-7888                     TCGA-IB-7889 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-IB-7890                     TCGA-IB-7891 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-IB-7893                     TCGA-IB-7897 
  "AMP PEAK  6(11P11.2) MUTATED" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-IB-8126                     TCGA-IB-8127 
"AMP PEAK  6(11P11.2) WILD-TYPE"   "AMP PEAK  6(11P11.2) MUTATED" 
                    TCGA-IB-A5SO                     TCGA-IB-A5SP 
"AMP PEAK  6(11P11.2) WILD-TYPE"   "AMP PEAK  6(11P11.2) MUTATED" 
                    TCGA-IB-A5SQ                     TCGA-IB-A5SS 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-IB-A5ST                     TCGA-IB-A6UG 
"AMP PEAK  6(11P11.2) WILD-TYPE"   "AMP PEAK  6(11P11.2) MUTATED" 
                    TCGA-LB-A7SX                     TCGA-OE-A75W 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-PZ-A5RE                     TCGA-Q3-A5QY 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-US-A779                     TCGA-US-A77E 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-US-A77J 
"AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-F2-6879                     TCGA-F2-6880 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"AMP PEAK  6(11P11.2) WILD-TYPE"   "AMP PEAK  6(11P11.2) MUTATED" 
                    TCGA-FB-A5VM                     TCGA-FB-A78T 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-FB-A7DR                     TCGA-FZ-5920 
"AMP PEAK  6(11P11.2) WILD-TYPE"   "AMP PEAK  6(11P11.2) MUTATED" 
                    TCGA-FZ-5922                     TCGA-FZ-5923 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-H8-A6C1                     TCGA-HZ-7289 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-HZ-7918                     TCGA-HZ-7919 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-HZ-7922                     TCGA-HZ-7923 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-HZ-7924                     TCGA-HZ-7925 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-HZ-7926                     TCGA-HZ-8001 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-HZ-8002                     TCGA-HZ-8003 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-HZ-8005                     TCGA-HZ-8315 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-HZ-8317                     TCGA-HZ-8519 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-HZ-8636                     TCGA-HZ-8638 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-HZ-A49G                     TCGA-HZ-A49H 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-HZ-A4BH                     TCGA-HZ-A4BK 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-IB-7644                     TCGA-IB-7645 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-IB-7646                     TCGA-IB-7647 
"AMP PEAK  6(11P11.2) WILD-TYPE"   "AMP PEAK  6(11P11.2) MUTATED" 
                    TCGA-IB-7649                     TCGA-IB-7651 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-IB-7652                     TCGA-IB-7885 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-IB-7886                     TCGA-IB-7887 
  "AMP PEAK  6(11P11.2) MUTATED" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-IB-7888                     TCGA-IB-7889 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-IB-7890                     TCGA-IB-7891 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-IB-7893                     TCGA-IB-7897 
  "AMP PEAK  6(11P11.2) MUTATED" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-IB-8126                     TCGA-IB-8127 
"AMP PEAK  6(11P11.2) WILD-TYPE"   "AMP PEAK  6(11P11.2) MUTATED" 
                    TCGA-IB-A5SO                     TCGA-IB-A5SP 
"AMP PEAK  6(11P11.2) WILD-TYPE"   "AMP PEAK  6(11P11.2) MUTATED" 
                    TCGA-IB-A5SQ                     TCGA-IB-A5SS 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-IB-A5ST                     TCGA-IB-A6UG 
"AMP PEAK  6(11P11.2) WILD-TYPE"   "AMP PEAK  6(11P11.2) MUTATED" 
                    TCGA-LB-A7SX                     TCGA-OE-A75W 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-PZ-A5RE                     TCGA-Q3-A5QY 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-US-A779                     TCGA-US-A77E 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-US-A77J 
"AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-F2-6879                     TCGA-F2-6880 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"AMP PEAK  6(11P11.2) WILD-TYPE"   "AMP PEAK  6(11P11.2) MUTATED" 
                    TCGA-FB-A5VM                     TCGA-FB-A78T 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-FB-A7DR                     TCGA-FZ-5920 
"AMP PEAK  6(11P11.2) WILD-TYPE"   "AMP PEAK  6(11P11.2) MUTATED" 
                    TCGA-FZ-5922                     TCGA-FZ-5923 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-H8-A6C1                     TCGA-HZ-7289 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-HZ-7918                     TCGA-HZ-7919 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-HZ-7922                     TCGA-HZ-7923 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-HZ-7924                     TCGA-HZ-7925 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-HZ-7926                     TCGA-HZ-8001 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-HZ-8002                     TCGA-HZ-8003 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-HZ-8005                     TCGA-HZ-8315 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-HZ-8317                     TCGA-HZ-8519 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-HZ-8636                     TCGA-HZ-8638 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-HZ-A49G                     TCGA-HZ-A49H 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-HZ-A4BH                     TCGA-HZ-A4BK 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-IB-7644                     TCGA-IB-7645 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-IB-7646                     TCGA-IB-7647 
"AMP PEAK  6(11P11.2) WILD-TYPE"   "AMP PEAK  6(11P11.2) MUTATED" 
                    TCGA-IB-7649                     TCGA-IB-7651 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-IB-7652                     TCGA-IB-7885 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-IB-7886                     TCGA-IB-7887 
  "AMP PEAK  6(11P11.2) MUTATED" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-IB-7888                     TCGA-IB-7889 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-IB-7890                     TCGA-IB-7891 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-IB-7893                     TCGA-IB-7897 
  "AMP PEAK  6(11P11.2) MUTATED" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-IB-8126                     TCGA-IB-8127 
"AMP PEAK  6(11P11.2) WILD-TYPE"   "AMP PEAK  6(11P11.2) MUTATED" 
                    TCGA-IB-A5SO                     TCGA-IB-A5SP 
"AMP PEAK  6(11P11.2) WILD-TYPE"   "AMP PEAK  6(11P11.2) MUTATED" 
                    TCGA-IB-A5SQ                     TCGA-IB-A5SS 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-IB-A5ST                     TCGA-IB-A6UG 
"AMP PEAK  6(11P11.2) WILD-TYPE"   "AMP PEAK  6(11P11.2) MUTATED" 
                    TCGA-LB-A7SX                     TCGA-OE-A75W 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-PZ-A5RE                     TCGA-Q3-A5QY 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-US-A779                     TCGA-US-A77E 
"AMP PEAK  6(11P11.2) WILD-TYPE" "AMP PEAK  6(11P11.2) WILD-TYPE" 
                    TCGA-US-A77J 
"AMP PEAK  6(11P11.2) WILD-TYPE" 
[1] "hr=" "1.6"
D6V2, continuous
                                vv
clus                             STAGE IA STAGE IB STAGE IIA STAGE IIB
  AMP PEAK  6(11P11.2) MUTATED          0        0         2         6
  AMP PEAK  6(11P11.2) WILD-TYPE        2        4         9        44
                                vv
clus                             STAGE III STAGE IV
  AMP PEAK  6(11P11.2) MUTATED           0        0
  AMP PEAK  6(11P11.2) WILD-TYPE         2        3
D6V3, multiclass
                                vv
clus                             T1+T2 T3+T4
  AMP PEAK  6(11P11.2) MUTATED       0     8
  AMP PEAK  6(11P11.2) WILD-TYPE     7    57
D6V4, multiclass
       clus
vv      AMP PEAK  6(11P11.2) MUTATED AMP PEAK  6(11P11.2) WILD-TYPE
  T1+T2                            0                              7
  T3+T4                            8                             57
D6V5, binary
                                cls
clus                              0  1
  AMP PEAK  6(11P11.2) MUTATED    2  6
  AMP PEAK  6(11P11.2) WILD-TYPE 16 47
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  6(11P11.2) MUTATED      2    6
  AMP PEAK  6(11P11.2) WILD-TYPE   16   47
   clus
vv  AMP PEAK  6(11P11.2) MUTATED AMP PEAK  6(11P11.2) WILD-TYPE
  0                            2                             16
  1                            6                             47
                                vv
clus                             M0 M1 MX
  AMP PEAK  6(11P11.2) MUTATED    8  0  0
  AMP PEAK  6(11P11.2) WILD-TYPE 31  3 30
D6V6, multiclass
    clus
vv   AMP PEAK  6(11P11.2) MUTATED AMP PEAK  6(11P11.2) WILD-TYPE
  M0                            8                             31
  M1                            0                              3
  MX                            0                             30
D6V7, binary
                                cls
clus                              0  1
  AMP PEAK  6(11P11.2) MUTATED    2  6
  AMP PEAK  6(11P11.2) WILD-TYPE 34 30
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  6(11P11.2) MUTATED      2    6
  AMP PEAK  6(11P11.2) WILD-TYPE   34   30
        clus
vv       AMP PEAK  6(11P11.2) MUTATED AMP PEAK  6(11P11.2) WILD-TYPE
  FEMALE                            2                             34
  MALE                              6                             30
                                vv
clus                             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  AMP PEAK  6(11P11.2) MUTATED                                     8
  AMP PEAK  6(11P11.2) WILD-TYPE                                  56
                                vv
clus                             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  AMP PEAK  6(11P11.2) MUTATED                                       0
  AMP PEAK  6(11P11.2) WILD-TYPE                                     5
                                vv
clus                             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  AMP PEAK  6(11P11.2) MUTATED                                                  0
  AMP PEAK  6(11P11.2) WILD-TYPE                                                2
D6V8, multiclass
                                                  clus
vv                                                 AMP PEAK  6(11P11.2) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                         8
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                       0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                            0
                                                  clus
vv                                                 AMP PEAK  6(11P11.2) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                          56
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                         5
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                              2
D6V9, continuous
D6V10, continuous
                                vv
clus                             R0 R1 RX
  AMP PEAK  6(11P11.2) MUTATED    2  5  0
  AMP PEAK  6(11P11.2) WILD-TYPE 41 19  2
D6V11, multiclass
    clus
vv   AMP PEAK  6(11P11.2) MUTATED AMP PEAK  6(11P11.2) WILD-TYPE
  R0                            2                             41
  R1                            5                             19
  RX                            0                              2
D6V12, continuous

Clustering(7) Variable = AMP PEAK  7(12P13.33) MUTATION ANALYSIS
D7V1, survival
                                 sevent
clus2                              0  1
  AMP PEAK  7(12P13.33) MUTATED    4  5
  AMP PEAK  7(12P13.33) WILD-TYPE 36 24
  AMP PEAK  7(12P13.33) MUTATED AMP PEAK  7(12P13.33) WILD-TYPE 
                              9                              60 
  AMP PEAK  7(12P13.33) MUTATED AMP PEAK  7(12P13.33) WILD-TYPE 
                              5                              24 
$`AMP PEAK  7(12P13.33) MUTATED`
TCGA-F2-6879 TCGA-HZ-7289 TCGA-HZ-7922 TCGA-HZ-8005 TCGA-IB-7646 TCGA-IB-7890 
       10.98         7.89         0.13         3.95         4.77        19.66 
TCGA-IB-8127 TCGA-IB-A6UG TCGA-LB-A7SX 
       17.16         1.35         4.18 

$`AMP PEAK  7(12P13.33) WILD-TYPE`
TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
        9.70        11.84         7.10         5.03        19.27         0.13 
TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 
       12.66         2.47         0.03         5.46         2.01        36.20 
TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7918 TCGA-HZ-7919 
       20.81        12.89         7.66        13.02         0.92         0.66 
TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 
        0.26        12.13        11.87         0.26         0.62         0.79 
TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 TCGA-HZ-8638 
        0.69         0.92         0.53         0.10         0.16         2.99 
TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 
        0.76         0.95         6.38         1.51        11.41        49.38 
TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 
       21.90        15.35        19.82        15.65        27.98         4.04 
TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 
        3.62        43.79        15.81        16.04         3.85        15.98 
TCGA-IB-8126 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
        0.56        10.82         9.86         7.20        15.12         0.26 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62         8.12        13.68        16.80        14.14        18.67 

  AMP PEAK  7(12P13.33) MUTATED AMP PEAK  7(12P13.33) WILD-TYPE 
                           0.13                            0.03 
  AMP PEAK  7(12P13.33) MUTATED AMP PEAK  7(12P13.33) WILD-TYPE 
                          19.66                           49.38 
  AMP PEAK  7(12P13.33) MUTATED AMP PEAK  7(12P13.33) WILD-TYPE 
                           4.77                            7.43 
[1] "0.1 - 19.7 (4.8)" "0.0 - 49.4 (7.4)"
                     TCGA-F2-6879                      TCGA-F2-6880 
  "AMP PEAK  7(12P13.33) MUTATED" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-F2-7273                      TCGA-F2-7276 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-F2-A44G                      TCGA-F2-A44H 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-FB-A4P5                      TCGA-FB-A545 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-FB-A5VM                      TCGA-FB-A78T 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-FB-A7DR                      TCGA-FZ-5920 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-FZ-5922                      TCGA-FZ-5923 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-H6-8124                      TCGA-H6-A45N 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-H8-A6C1                      TCGA-HZ-7289 
"AMP PEAK  7(12P13.33) WILD-TYPE"   "AMP PEAK  7(12P13.33) MUTATED" 
                     TCGA-HZ-7918                      TCGA-HZ-7919 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-HZ-7922                      TCGA-HZ-7923 
  "AMP PEAK  7(12P13.33) MUTATED" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-HZ-7924                      TCGA-HZ-7925 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-HZ-7926                      TCGA-HZ-8001 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-HZ-8002                      TCGA-HZ-8003 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-HZ-8005                      TCGA-HZ-8315 
  "AMP PEAK  7(12P13.33) MUTATED" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-HZ-8317                      TCGA-HZ-8519 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-HZ-8636                      TCGA-HZ-8638 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-HZ-A49G                      TCGA-HZ-A49H 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-HZ-A4BH                      TCGA-HZ-A4BK 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-IB-7644                      TCGA-IB-7645 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-IB-7646                      TCGA-IB-7647 
  "AMP PEAK  7(12P13.33) MUTATED" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-IB-7649                      TCGA-IB-7651 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-IB-7652                      TCGA-IB-7885 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-IB-7886                      TCGA-IB-7887 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-IB-7888                      TCGA-IB-7889 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-IB-7890                      TCGA-IB-7891 
  "AMP PEAK  7(12P13.33) MUTATED" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-IB-7893                      TCGA-IB-7897 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-IB-8126                      TCGA-IB-8127 
"AMP PEAK  7(12P13.33) WILD-TYPE"   "AMP PEAK  7(12P13.33) MUTATED" 
                     TCGA-IB-A5SO                      TCGA-IB-A5SP 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-IB-A5SQ                      TCGA-IB-A5SS 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-IB-A5ST                      TCGA-IB-A6UG 
"AMP PEAK  7(12P13.33) WILD-TYPE"   "AMP PEAK  7(12P13.33) MUTATED" 
                     TCGA-LB-A7SX                      TCGA-OE-A75W 
  "AMP PEAK  7(12P13.33) MUTATED" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-PZ-A5RE                      TCGA-Q3-A5QY 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-US-A779                      TCGA-US-A77E 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-US-A77J 
"AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-F2-6879                      TCGA-F2-6880 
  "AMP PEAK  7(12P13.33) MUTATED" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-F2-7273                      TCGA-F2-7276 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-F2-A44G                      TCGA-F2-A44H 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-FB-A4P5                      TCGA-FB-A545 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-FB-A5VM                      TCGA-FB-A78T 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-FB-A7DR                      TCGA-FZ-5920 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-FZ-5922                      TCGA-FZ-5923 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-H6-8124                      TCGA-H6-A45N 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-H8-A6C1                      TCGA-HZ-7289 
"AMP PEAK  7(12P13.33) WILD-TYPE"   "AMP PEAK  7(12P13.33) MUTATED" 
                     TCGA-HZ-7918                      TCGA-HZ-7919 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-HZ-7922                      TCGA-HZ-7923 
  "AMP PEAK  7(12P13.33) MUTATED" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-HZ-7924                      TCGA-HZ-7925 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-HZ-7926                      TCGA-HZ-8001 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-HZ-8002                      TCGA-HZ-8003 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-HZ-8005                      TCGA-HZ-8315 
  "AMP PEAK  7(12P13.33) MUTATED" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-HZ-8317                      TCGA-HZ-8519 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-HZ-8636                      TCGA-HZ-8638 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-HZ-A49G                      TCGA-HZ-A49H 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-HZ-A4BH                      TCGA-HZ-A4BK 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-IB-7644                      TCGA-IB-7645 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-IB-7646                      TCGA-IB-7647 
  "AMP PEAK  7(12P13.33) MUTATED" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-IB-7649                      TCGA-IB-7651 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-IB-7652                      TCGA-IB-7885 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-IB-7886                      TCGA-IB-7887 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-IB-7888                      TCGA-IB-7889 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-IB-7890                      TCGA-IB-7891 
  "AMP PEAK  7(12P13.33) MUTATED" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-IB-7893                      TCGA-IB-7897 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-IB-8126                      TCGA-IB-8127 
"AMP PEAK  7(12P13.33) WILD-TYPE"   "AMP PEAK  7(12P13.33) MUTATED" 
                     TCGA-IB-A5SO                      TCGA-IB-A5SP 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-IB-A5SQ                      TCGA-IB-A5SS 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-IB-A5ST                      TCGA-IB-A6UG 
"AMP PEAK  7(12P13.33) WILD-TYPE"   "AMP PEAK  7(12P13.33) MUTATED" 
                     TCGA-LB-A7SX                      TCGA-OE-A75W 
  "AMP PEAK  7(12P13.33) MUTATED" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-PZ-A5RE                      TCGA-Q3-A5QY 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-US-A779                      TCGA-US-A77E 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-US-A77J 
"AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-F2-6879                      TCGA-F2-6880 
  "AMP PEAK  7(12P13.33) MUTATED" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-F2-7273                      TCGA-F2-7276 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-F2-A44G                      TCGA-F2-A44H 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-FB-A4P5                      TCGA-FB-A545 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-FB-A5VM                      TCGA-FB-A78T 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-FB-A7DR                      TCGA-FZ-5920 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-FZ-5922                      TCGA-FZ-5923 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-H6-8124                      TCGA-H6-A45N 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-H8-A6C1                      TCGA-HZ-7289 
"AMP PEAK  7(12P13.33) WILD-TYPE"   "AMP PEAK  7(12P13.33) MUTATED" 
                     TCGA-HZ-7918                      TCGA-HZ-7919 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-HZ-7922                      TCGA-HZ-7923 
  "AMP PEAK  7(12P13.33) MUTATED" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-HZ-7924                      TCGA-HZ-7925 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-HZ-7926                      TCGA-HZ-8001 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-HZ-8002                      TCGA-HZ-8003 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-HZ-8005                      TCGA-HZ-8315 
  "AMP PEAK  7(12P13.33) MUTATED" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-HZ-8317                      TCGA-HZ-8519 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-HZ-8636                      TCGA-HZ-8638 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-HZ-A49G                      TCGA-HZ-A49H 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-HZ-A4BH                      TCGA-HZ-A4BK 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-IB-7644                      TCGA-IB-7645 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-IB-7646                      TCGA-IB-7647 
  "AMP PEAK  7(12P13.33) MUTATED" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-IB-7649                      TCGA-IB-7651 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-IB-7652                      TCGA-IB-7885 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-IB-7886                      TCGA-IB-7887 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-IB-7888                      TCGA-IB-7889 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-IB-7890                      TCGA-IB-7891 
  "AMP PEAK  7(12P13.33) MUTATED" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-IB-7893                      TCGA-IB-7897 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-IB-8126                      TCGA-IB-8127 
"AMP PEAK  7(12P13.33) WILD-TYPE"   "AMP PEAK  7(12P13.33) MUTATED" 
                     TCGA-IB-A5SO                      TCGA-IB-A5SP 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-IB-A5SQ                      TCGA-IB-A5SS 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-IB-A5ST                      TCGA-IB-A6UG 
"AMP PEAK  7(12P13.33) WILD-TYPE"   "AMP PEAK  7(12P13.33) MUTATED" 
                     TCGA-LB-A7SX                      TCGA-OE-A75W 
  "AMP PEAK  7(12P13.33) MUTATED" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-PZ-A5RE                      TCGA-Q3-A5QY 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-US-A779                      TCGA-US-A77E 
"AMP PEAK  7(12P13.33) WILD-TYPE" "AMP PEAK  7(12P13.33) WILD-TYPE" 
                     TCGA-US-A77J 
"AMP PEAK  7(12P13.33) WILD-TYPE" 
[1] "hr=" "1.9"
D7V2, continuous
                                 vv
clus                              STAGE IA STAGE IB STAGE IIA STAGE IIB
  AMP PEAK  7(12P13.33) MUTATED          0        1         0         8
  AMP PEAK  7(12P13.33) WILD-TYPE        2        3        11        42
                                 vv
clus                              STAGE III STAGE IV
  AMP PEAK  7(12P13.33) MUTATED           0        0
  AMP PEAK  7(12P13.33) WILD-TYPE         2        3
D7V3, multiclass
                                 vv
clus                              T1+T2 T3+T4
  AMP PEAK  7(12P13.33) MUTATED       1     8
  AMP PEAK  7(12P13.33) WILD-TYPE     6    57
D7V4, multiclass
       clus
vv      AMP PEAK  7(12P13.33) MUTATED AMP PEAK  7(12P13.33) WILD-TYPE
  T1+T2                             1                               6
  T3+T4                             8                              57
D7V5, binary
                                 cls
clus                               0  1
  AMP PEAK  7(12P13.33) MUTATED    1  8
  AMP PEAK  7(12P13.33) WILD-TYPE 17 45
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK  7(12P13.33) MUTATED      1    8
  AMP PEAK  7(12P13.33) WILD-TYPE   17   45
   clus
vv  AMP PEAK  7(12P13.33) MUTATED AMP PEAK  7(12P13.33) WILD-TYPE
  0                             1                              17
  1                             8                              45
                                 vv
clus                              M0 M1 MX
  AMP PEAK  7(12P13.33) MUTATED    5  0  4
  AMP PEAK  7(12P13.33) WILD-TYPE 34  3 26
D7V6, multiclass
    clus
vv   AMP PEAK  7(12P13.33) MUTATED AMP PEAK  7(12P13.33) WILD-TYPE
  M0                             5                              34
  M1                             0                               3
  MX                             4                              26
D7V7, binary
                                 cls
clus                               0  1
  AMP PEAK  7(12P13.33) MUTATED    2  7
  AMP PEAK  7(12P13.33) WILD-TYPE 34 29
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK  7(12P13.33) MUTATED      2    7
  AMP PEAK  7(12P13.33) WILD-TYPE   34   29
        clus
vv       AMP PEAK  7(12P13.33) MUTATED AMP PEAK  7(12P13.33) WILD-TYPE
  FEMALE                             2                              34
  MALE                               7                              29
                                 vv
clus                              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  AMP PEAK  7(12P13.33) MUTATED                                     7
  AMP PEAK  7(12P13.33) WILD-TYPE                                  57
                                 vv
clus                              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  AMP PEAK  7(12P13.33) MUTATED                                       1
  AMP PEAK  7(12P13.33) WILD-TYPE                                     4
                                 vv
clus                              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  AMP PEAK  7(12P13.33) MUTATED                                                  0
  AMP PEAK  7(12P13.33) WILD-TYPE                                                2
D7V8, multiclass
                                                  clus
vv                                                 AMP PEAK  7(12P13.33) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                          7
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                        1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                             0
                                                  clus
vv                                                 AMP PEAK  7(12P13.33) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                           57
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                               2
D7V9, continuous
D7V10, continuous
                                 vv
clus                              R0 R1 RX
  AMP PEAK  7(12P13.33) MUTATED    3  5  1
  AMP PEAK  7(12P13.33) WILD-TYPE 40 19  1
D7V11, multiclass
    clus
vv   AMP PEAK  7(12P13.33) MUTATED AMP PEAK  7(12P13.33) WILD-TYPE
  R0                             3                              40
  R1                             5                              19
  RX                             1                               1
D7V12, continuous

Clustering(8) Variable = AMP PEAK  8(12P11.21) MUTATION ANALYSIS
D8V1, survival
                                 sevent
clus2                              0  1
  AMP PEAK  8(12P11.21) MUTATED    6  6
  AMP PEAK  8(12P11.21) WILD-TYPE 34 23
  AMP PEAK  8(12P11.21) MUTATED AMP PEAK  8(12P11.21) WILD-TYPE 
                             12                              57 
  AMP PEAK  8(12P11.21) MUTATED AMP PEAK  8(12P11.21) WILD-TYPE 
                              6                              23 
$`AMP PEAK  8(12P11.21) MUTATED`
TCGA-FZ-5920 TCGA-HZ-7289 TCGA-HZ-7922 TCGA-HZ-8005 TCGA-HZ-8636 TCGA-HZ-A4BH 
        2.01         7.89         0.13         3.95         0.16         6.38 
TCGA-HZ-A4BK TCGA-IB-7646 TCGA-IB-7886 TCGA-IB-7890 TCGA-IB-8127 TCGA-IB-A6UG 
        1.51         4.77         4.04        19.66        17.16         1.35 

$`AMP PEAK  8(12P11.21) WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5922 
        0.13        12.66         2.47         0.03         5.46        36.20 
TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7918 TCGA-HZ-7919 
       20.81        12.89         7.66        13.02         0.92         0.66 
TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 
        0.26        12.13        11.87         0.26         0.62         0.79 
TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8638 TCGA-HZ-A49G 
        0.69         0.92         0.53         0.10         2.99         0.76 
TCGA-HZ-A49H TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 
        0.95        11.41        49.38        21.90        15.35        19.82 
TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7891 
       15.65        27.98         3.62        43.79        15.81        16.04 
TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ 
        3.85        15.98         0.56        10.82         9.86         7.20 
TCGA-IB-A5SS TCGA-IB-A5ST TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY 
       15.12         0.26         4.18         3.62         8.12        13.68 
TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       16.80        14.14        18.67 

  AMP PEAK  8(12P11.21) MUTATED AMP PEAK  8(12P11.21) WILD-TYPE 
                           0.13                            0.03 
  AMP PEAK  8(12P11.21) MUTATED AMP PEAK  8(12P11.21) WILD-TYPE 
                          19.66                           49.38 
  AMP PEAK  8(12P11.21) MUTATED AMP PEAK  8(12P11.21) WILD-TYPE 
                          3.995                           9.700 
[1] "0.1 - 19.7 (4.0)" "0.0 - 49.4 (9.7)"
                     TCGA-F2-6879                      TCGA-F2-6880 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-F2-7273                      TCGA-F2-7276 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-F2-A44G                      TCGA-F2-A44H 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-FB-A4P5                      TCGA-FB-A545 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-FB-A5VM                      TCGA-FB-A78T 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-FB-A7DR                      TCGA-FZ-5920 
"AMP PEAK  8(12P11.21) WILD-TYPE"   "AMP PEAK  8(12P11.21) MUTATED" 
                     TCGA-FZ-5922                      TCGA-FZ-5923 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-H6-8124                      TCGA-H6-A45N 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-H8-A6C1                      TCGA-HZ-7289 
"AMP PEAK  8(12P11.21) WILD-TYPE"   "AMP PEAK  8(12P11.21) MUTATED" 
                     TCGA-HZ-7918                      TCGA-HZ-7919 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-HZ-7922                      TCGA-HZ-7923 
  "AMP PEAK  8(12P11.21) MUTATED" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-HZ-7924                      TCGA-HZ-7925 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-HZ-7926                      TCGA-HZ-8001 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-HZ-8002                      TCGA-HZ-8003 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-HZ-8005                      TCGA-HZ-8315 
  "AMP PEAK  8(12P11.21) MUTATED" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-HZ-8317                      TCGA-HZ-8519 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-HZ-8636                      TCGA-HZ-8638 
  "AMP PEAK  8(12P11.21) MUTATED" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-HZ-A49G                      TCGA-HZ-A49H 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-HZ-A4BH                      TCGA-HZ-A4BK 
  "AMP PEAK  8(12P11.21) MUTATED"   "AMP PEAK  8(12P11.21) MUTATED" 
                     TCGA-IB-7644                      TCGA-IB-7645 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-IB-7646                      TCGA-IB-7647 
  "AMP PEAK  8(12P11.21) MUTATED" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-IB-7649                      TCGA-IB-7651 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-IB-7652                      TCGA-IB-7885 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-IB-7886                      TCGA-IB-7887 
  "AMP PEAK  8(12P11.21) MUTATED" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-IB-7888                      TCGA-IB-7889 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-IB-7890                      TCGA-IB-7891 
  "AMP PEAK  8(12P11.21) MUTATED" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-IB-7893                      TCGA-IB-7897 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-IB-8126                      TCGA-IB-8127 
"AMP PEAK  8(12P11.21) WILD-TYPE"   "AMP PEAK  8(12P11.21) MUTATED" 
                     TCGA-IB-A5SO                      TCGA-IB-A5SP 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-IB-A5SQ                      TCGA-IB-A5SS 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-IB-A5ST                      TCGA-IB-A6UG 
"AMP PEAK  8(12P11.21) WILD-TYPE"   "AMP PEAK  8(12P11.21) MUTATED" 
                     TCGA-LB-A7SX                      TCGA-OE-A75W 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-PZ-A5RE                      TCGA-Q3-A5QY 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-US-A779                      TCGA-US-A77E 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-US-A77J 
"AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-F2-6879                      TCGA-F2-6880 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-F2-7273                      TCGA-F2-7276 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-F2-A44G                      TCGA-F2-A44H 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-FB-A4P5                      TCGA-FB-A545 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-FB-A5VM                      TCGA-FB-A78T 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-FB-A7DR                      TCGA-FZ-5920 
"AMP PEAK  8(12P11.21) WILD-TYPE"   "AMP PEAK  8(12P11.21) MUTATED" 
                     TCGA-FZ-5922                      TCGA-FZ-5923 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-H6-8124                      TCGA-H6-A45N 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-H8-A6C1                      TCGA-HZ-7289 
"AMP PEAK  8(12P11.21) WILD-TYPE"   "AMP PEAK  8(12P11.21) MUTATED" 
                     TCGA-HZ-7918                      TCGA-HZ-7919 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-HZ-7922                      TCGA-HZ-7923 
  "AMP PEAK  8(12P11.21) MUTATED" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-HZ-7924                      TCGA-HZ-7925 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-HZ-7926                      TCGA-HZ-8001 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-HZ-8002                      TCGA-HZ-8003 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-HZ-8005                      TCGA-HZ-8315 
  "AMP PEAK  8(12P11.21) MUTATED" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-HZ-8317                      TCGA-HZ-8519 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-HZ-8636                      TCGA-HZ-8638 
  "AMP PEAK  8(12P11.21) MUTATED" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-HZ-A49G                      TCGA-HZ-A49H 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-HZ-A4BH                      TCGA-HZ-A4BK 
  "AMP PEAK  8(12P11.21) MUTATED"   "AMP PEAK  8(12P11.21) MUTATED" 
                     TCGA-IB-7644                      TCGA-IB-7645 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-IB-7646                      TCGA-IB-7647 
  "AMP PEAK  8(12P11.21) MUTATED" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-IB-7649                      TCGA-IB-7651 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-IB-7652                      TCGA-IB-7885 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-IB-7886                      TCGA-IB-7887 
  "AMP PEAK  8(12P11.21) MUTATED" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-IB-7888                      TCGA-IB-7889 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-IB-7890                      TCGA-IB-7891 
  "AMP PEAK  8(12P11.21) MUTATED" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-IB-7893                      TCGA-IB-7897 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-IB-8126                      TCGA-IB-8127 
"AMP PEAK  8(12P11.21) WILD-TYPE"   "AMP PEAK  8(12P11.21) MUTATED" 
                     TCGA-IB-A5SO                      TCGA-IB-A5SP 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-IB-A5SQ                      TCGA-IB-A5SS 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-IB-A5ST                      TCGA-IB-A6UG 
"AMP PEAK  8(12P11.21) WILD-TYPE"   "AMP PEAK  8(12P11.21) MUTATED" 
                     TCGA-LB-A7SX                      TCGA-OE-A75W 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-PZ-A5RE                      TCGA-Q3-A5QY 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-US-A779                      TCGA-US-A77E 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-US-A77J 
"AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-F2-6879                      TCGA-F2-6880 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-F2-7273                      TCGA-F2-7276 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-F2-A44G                      TCGA-F2-A44H 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-FB-A4P5                      TCGA-FB-A545 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-FB-A5VM                      TCGA-FB-A78T 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-FB-A7DR                      TCGA-FZ-5920 
"AMP PEAK  8(12P11.21) WILD-TYPE"   "AMP PEAK  8(12P11.21) MUTATED" 
                     TCGA-FZ-5922                      TCGA-FZ-5923 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-H6-8124                      TCGA-H6-A45N 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-H8-A6C1                      TCGA-HZ-7289 
"AMP PEAK  8(12P11.21) WILD-TYPE"   "AMP PEAK  8(12P11.21) MUTATED" 
                     TCGA-HZ-7918                      TCGA-HZ-7919 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-HZ-7922                      TCGA-HZ-7923 
  "AMP PEAK  8(12P11.21) MUTATED" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-HZ-7924                      TCGA-HZ-7925 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-HZ-7926                      TCGA-HZ-8001 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-HZ-8002                      TCGA-HZ-8003 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-HZ-8005                      TCGA-HZ-8315 
  "AMP PEAK  8(12P11.21) MUTATED" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-HZ-8317                      TCGA-HZ-8519 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-HZ-8636                      TCGA-HZ-8638 
  "AMP PEAK  8(12P11.21) MUTATED" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-HZ-A49G                      TCGA-HZ-A49H 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-HZ-A4BH                      TCGA-HZ-A4BK 
  "AMP PEAK  8(12P11.21) MUTATED"   "AMP PEAK  8(12P11.21) MUTATED" 
                     TCGA-IB-7644                      TCGA-IB-7645 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-IB-7646                      TCGA-IB-7647 
  "AMP PEAK  8(12P11.21) MUTATED" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-IB-7649                      TCGA-IB-7651 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-IB-7652                      TCGA-IB-7885 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-IB-7886                      TCGA-IB-7887 
  "AMP PEAK  8(12P11.21) MUTATED" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-IB-7888                      TCGA-IB-7889 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-IB-7890                      TCGA-IB-7891 
  "AMP PEAK  8(12P11.21) MUTATED" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-IB-7893                      TCGA-IB-7897 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-IB-8126                      TCGA-IB-8127 
"AMP PEAK  8(12P11.21) WILD-TYPE"   "AMP PEAK  8(12P11.21) MUTATED" 
                     TCGA-IB-A5SO                      TCGA-IB-A5SP 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-IB-A5SQ                      TCGA-IB-A5SS 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-IB-A5ST                      TCGA-IB-A6UG 
"AMP PEAK  8(12P11.21) WILD-TYPE"   "AMP PEAK  8(12P11.21) MUTATED" 
                     TCGA-LB-A7SX                      TCGA-OE-A75W 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-PZ-A5RE                      TCGA-Q3-A5QY 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-US-A779                      TCGA-US-A77E 
"AMP PEAK  8(12P11.21) WILD-TYPE" "AMP PEAK  8(12P11.21) WILD-TYPE" 
                     TCGA-US-A77J 
"AMP PEAK  8(12P11.21) WILD-TYPE" 
[1] "hr=" "2.5"
D8V2, continuous
                                 vv
clus                              STAGE IA STAGE IB STAGE IIA STAGE IIB
  AMP PEAK  8(12P11.21) MUTATED          0        1         0        10
  AMP PEAK  8(12P11.21) WILD-TYPE        2        3        11        40
                                 vv
clus                              STAGE III STAGE IV
  AMP PEAK  8(12P11.21) MUTATED           0        1
  AMP PEAK  8(12P11.21) WILD-TYPE         2        2
D8V3, multiclass
                                 vv
clus                              T1+T2 T3+T4
  AMP PEAK  8(12P11.21) MUTATED       1    11
  AMP PEAK  8(12P11.21) WILD-TYPE     6    54
D8V4, multiclass
       clus
vv      AMP PEAK  8(12P11.21) MUTATED AMP PEAK  8(12P11.21) WILD-TYPE
  T1+T2                             1                               6
  T3+T4                            11                              54
D8V5, binary
                                 cls
clus                               0  1
  AMP PEAK  8(12P11.21) MUTATED    2 10
  AMP PEAK  8(12P11.21) WILD-TYPE 16 43
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK  8(12P11.21) MUTATED      2   10
  AMP PEAK  8(12P11.21) WILD-TYPE   16   43
   clus
vv  AMP PEAK  8(12P11.21) MUTATED AMP PEAK  8(12P11.21) WILD-TYPE
  0                             2                              16
  1                            10                              43
                                 vv
clus                              M0 M1 MX
  AMP PEAK  8(12P11.21) MUTATED    6  1  5
  AMP PEAK  8(12P11.21) WILD-TYPE 33  2 25
D8V6, multiclass
    clus
vv   AMP PEAK  8(12P11.21) MUTATED AMP PEAK  8(12P11.21) WILD-TYPE
  M0                             6                              33
  M1                             1                               2
  MX                             5                              25
D8V7, binary
                                 cls
clus                               0  1
  AMP PEAK  8(12P11.21) MUTATED    2 10
  AMP PEAK  8(12P11.21) WILD-TYPE 34 26
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK  8(12P11.21) MUTATED      2   10
  AMP PEAK  8(12P11.21) WILD-TYPE   34   26
        clus
vv       AMP PEAK  8(12P11.21) MUTATED AMP PEAK  8(12P11.21) WILD-TYPE
  FEMALE                             2                              34
  MALE                              10                              26
                                 vv
clus                              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  AMP PEAK  8(12P11.21) MUTATED                                    10
  AMP PEAK  8(12P11.21) WILD-TYPE                                  54
                                 vv
clus                              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  AMP PEAK  8(12P11.21) MUTATED                                       2
  AMP PEAK  8(12P11.21) WILD-TYPE                                     3
                                 vv
clus                              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  AMP PEAK  8(12P11.21) MUTATED                                                  0
  AMP PEAK  8(12P11.21) WILD-TYPE                                                2
D8V8, multiclass
                                                  clus
vv                                                 AMP PEAK  8(12P11.21) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                         10
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                        2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                             0
                                                  clus
vv                                                 AMP PEAK  8(12P11.21) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                           54
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                          3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                               2
D8V9, continuous
D8V10, continuous
                                 vv
clus                              R0 R1 RX
  AMP PEAK  8(12P11.21) MUTATED    3  8  1
  AMP PEAK  8(12P11.21) WILD-TYPE 40 16  1
D8V11, multiclass
    clus
vv   AMP PEAK  8(12P11.21) MUTATED AMP PEAK  8(12P11.21) WILD-TYPE
  R0                             3                              40
  R1                             8                              16
  RX                             1                               1
D8V12, continuous

Clustering(9) Variable = AMP PEAK  9(12Q15) MUTATION ANALYSIS
D9V1, survival
                              sevent
clus2                           0  1
  AMP PEAK  9(12Q15) MUTATED    3  5
  AMP PEAK  9(12Q15) WILD-TYPE 37 24
  AMP PEAK  9(12Q15) MUTATED AMP PEAK  9(12Q15) WILD-TYPE 
                           8                           61 
  AMP PEAK  9(12Q15) MUTATED AMP PEAK  9(12Q15) WILD-TYPE 
                           5                           24 
$`AMP PEAK  9(12Q15) MUTATED`
TCGA-FZ-5920 TCGA-H6-8124 TCGA-HZ-7289 TCGA-HZ-8005 TCGA-HZ-A4BK TCGA-IB-7646 
        2.01        12.89         7.89         3.95         1.51         4.77 
TCGA-IB-A5SS TCGA-IB-A6UG 
       15.12         1.35 

$`AMP PEAK  9(12Q15) WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5922 
        0.13        12.66         2.47         0.03         5.46        36.20 
TCGA-FZ-5923 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 
       20.81         7.66        13.02         0.92         0.66         0.13 
TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 
        0.26        12.13        11.87         0.26         0.62         0.79 
TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 TCGA-HZ-8638 
        0.69         0.92         0.53         0.10         0.16         2.99 
TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7647 
        0.76         0.95         6.38        11.41        49.38        21.90 
TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 
       15.35        19.82        15.65        27.98         4.04         3.62 
TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 
       43.79        15.81        19.66        16.04         3.85        15.98 
TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5ST 
        0.56        17.16        10.82         9.86         7.20         0.26 
TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E 
        4.18         3.62         8.12        13.68        16.80        14.14 
TCGA-US-A77J 
       18.67 

  AMP PEAK  9(12Q15) MUTATED AMP PEAK  9(12Q15) WILD-TYPE 
                        1.35                         0.03 
  AMP PEAK  9(12Q15) MUTATED AMP PEAK  9(12Q15) WILD-TYPE 
                       15.12                        49.38 
  AMP PEAK  9(12Q15) MUTATED AMP PEAK  9(12Q15) WILD-TYPE 
                        4.36                         7.66 
[1] "1.4 - 15.1 (4.4)" "0.0 - 49.4 (7.7)"
                  TCGA-F2-6879                   TCGA-F2-6880 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-F2-7273                   TCGA-F2-7276 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-F2-A44G                   TCGA-F2-A44H 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-FB-A4P5                   TCGA-FB-A545 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-FB-A5VM                   TCGA-FB-A78T 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-FB-A7DR                   TCGA-FZ-5920 
"AMP PEAK  9(12Q15) WILD-TYPE"   "AMP PEAK  9(12Q15) MUTATED" 
                  TCGA-FZ-5922                   TCGA-FZ-5923 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-H6-8124                   TCGA-H6-A45N 
  "AMP PEAK  9(12Q15) MUTATED" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-H8-A6C1                   TCGA-HZ-7289 
"AMP PEAK  9(12Q15) WILD-TYPE"   "AMP PEAK  9(12Q15) MUTATED" 
                  TCGA-HZ-7918                   TCGA-HZ-7919 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-HZ-7922                   TCGA-HZ-7923 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-HZ-7924                   TCGA-HZ-7925 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-HZ-7926                   TCGA-HZ-8001 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-HZ-8002                   TCGA-HZ-8003 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-HZ-8005                   TCGA-HZ-8315 
  "AMP PEAK  9(12Q15) MUTATED" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-HZ-8317                   TCGA-HZ-8519 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-HZ-8636                   TCGA-HZ-8638 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-HZ-A49G                   TCGA-HZ-A49H 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-HZ-A4BH                   TCGA-HZ-A4BK 
"AMP PEAK  9(12Q15) WILD-TYPE"   "AMP PEAK  9(12Q15) MUTATED" 
                  TCGA-IB-7644                   TCGA-IB-7645 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-IB-7646                   TCGA-IB-7647 
  "AMP PEAK  9(12Q15) MUTATED" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-IB-7649                   TCGA-IB-7651 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-IB-7652                   TCGA-IB-7885 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-IB-7886                   TCGA-IB-7887 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-IB-7888                   TCGA-IB-7889 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-IB-7890                   TCGA-IB-7891 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-IB-7893                   TCGA-IB-7897 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-IB-8126                   TCGA-IB-8127 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-IB-A5SO                   TCGA-IB-A5SP 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-IB-A5SQ                   TCGA-IB-A5SS 
"AMP PEAK  9(12Q15) WILD-TYPE"   "AMP PEAK  9(12Q15) MUTATED" 
                  TCGA-IB-A5ST                   TCGA-IB-A6UG 
"AMP PEAK  9(12Q15) WILD-TYPE"   "AMP PEAK  9(12Q15) MUTATED" 
                  TCGA-LB-A7SX                   TCGA-OE-A75W 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-PZ-A5RE                   TCGA-Q3-A5QY 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-US-A779                   TCGA-US-A77E 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-US-A77J 
"AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-F2-6879                   TCGA-F2-6880 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-F2-7273                   TCGA-F2-7276 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-F2-A44G                   TCGA-F2-A44H 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-FB-A4P5                   TCGA-FB-A545 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-FB-A5VM                   TCGA-FB-A78T 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-FB-A7DR                   TCGA-FZ-5920 
"AMP PEAK  9(12Q15) WILD-TYPE"   "AMP PEAK  9(12Q15) MUTATED" 
                  TCGA-FZ-5922                   TCGA-FZ-5923 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-H6-8124                   TCGA-H6-A45N 
  "AMP PEAK  9(12Q15) MUTATED" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-H8-A6C1                   TCGA-HZ-7289 
"AMP PEAK  9(12Q15) WILD-TYPE"   "AMP PEAK  9(12Q15) MUTATED" 
                  TCGA-HZ-7918                   TCGA-HZ-7919 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-HZ-7922                   TCGA-HZ-7923 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-HZ-7924                   TCGA-HZ-7925 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-HZ-7926                   TCGA-HZ-8001 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-HZ-8002                   TCGA-HZ-8003 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-HZ-8005                   TCGA-HZ-8315 
  "AMP PEAK  9(12Q15) MUTATED" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-HZ-8317                   TCGA-HZ-8519 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-HZ-8636                   TCGA-HZ-8638 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-HZ-A49G                   TCGA-HZ-A49H 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-HZ-A4BH                   TCGA-HZ-A4BK 
"AMP PEAK  9(12Q15) WILD-TYPE"   "AMP PEAK  9(12Q15) MUTATED" 
                  TCGA-IB-7644                   TCGA-IB-7645 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-IB-7646                   TCGA-IB-7647 
  "AMP PEAK  9(12Q15) MUTATED" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-IB-7649                   TCGA-IB-7651 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-IB-7652                   TCGA-IB-7885 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-IB-7886                   TCGA-IB-7887 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-IB-7888                   TCGA-IB-7889 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-IB-7890                   TCGA-IB-7891 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-IB-7893                   TCGA-IB-7897 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-IB-8126                   TCGA-IB-8127 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-IB-A5SO                   TCGA-IB-A5SP 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-IB-A5SQ                   TCGA-IB-A5SS 
"AMP PEAK  9(12Q15) WILD-TYPE"   "AMP PEAK  9(12Q15) MUTATED" 
                  TCGA-IB-A5ST                   TCGA-IB-A6UG 
"AMP PEAK  9(12Q15) WILD-TYPE"   "AMP PEAK  9(12Q15) MUTATED" 
                  TCGA-LB-A7SX                   TCGA-OE-A75W 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-PZ-A5RE                   TCGA-Q3-A5QY 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-US-A779                   TCGA-US-A77E 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-US-A77J 
"AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-F2-6879                   TCGA-F2-6880 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-F2-7273                   TCGA-F2-7276 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-F2-A44G                   TCGA-F2-A44H 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-FB-A4P5                   TCGA-FB-A545 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-FB-A5VM                   TCGA-FB-A78T 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-FB-A7DR                   TCGA-FZ-5920 
"AMP PEAK  9(12Q15) WILD-TYPE"   "AMP PEAK  9(12Q15) MUTATED" 
                  TCGA-FZ-5922                   TCGA-FZ-5923 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-H6-8124                   TCGA-H6-A45N 
  "AMP PEAK  9(12Q15) MUTATED" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-H8-A6C1                   TCGA-HZ-7289 
"AMP PEAK  9(12Q15) WILD-TYPE"   "AMP PEAK  9(12Q15) MUTATED" 
                  TCGA-HZ-7918                   TCGA-HZ-7919 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-HZ-7922                   TCGA-HZ-7923 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-HZ-7924                   TCGA-HZ-7925 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-HZ-7926                   TCGA-HZ-8001 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-HZ-8002                   TCGA-HZ-8003 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-HZ-8005                   TCGA-HZ-8315 
  "AMP PEAK  9(12Q15) MUTATED" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-HZ-8317                   TCGA-HZ-8519 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-HZ-8636                   TCGA-HZ-8638 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-HZ-A49G                   TCGA-HZ-A49H 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-HZ-A4BH                   TCGA-HZ-A4BK 
"AMP PEAK  9(12Q15) WILD-TYPE"   "AMP PEAK  9(12Q15) MUTATED" 
                  TCGA-IB-7644                   TCGA-IB-7645 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-IB-7646                   TCGA-IB-7647 
  "AMP PEAK  9(12Q15) MUTATED" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-IB-7649                   TCGA-IB-7651 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-IB-7652                   TCGA-IB-7885 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-IB-7886                   TCGA-IB-7887 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-IB-7888                   TCGA-IB-7889 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-IB-7890                   TCGA-IB-7891 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-IB-7893                   TCGA-IB-7897 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-IB-8126                   TCGA-IB-8127 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-IB-A5SO                   TCGA-IB-A5SP 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-IB-A5SQ                   TCGA-IB-A5SS 
"AMP PEAK  9(12Q15) WILD-TYPE"   "AMP PEAK  9(12Q15) MUTATED" 
                  TCGA-IB-A5ST                   TCGA-IB-A6UG 
"AMP PEAK  9(12Q15) WILD-TYPE"   "AMP PEAK  9(12Q15) MUTATED" 
                  TCGA-LB-A7SX                   TCGA-OE-A75W 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-PZ-A5RE                   TCGA-Q3-A5QY 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-US-A779                   TCGA-US-A77E 
"AMP PEAK  9(12Q15) WILD-TYPE" "AMP PEAK  9(12Q15) WILD-TYPE" 
                  TCGA-US-A77J 
"AMP PEAK  9(12Q15) WILD-TYPE" 
[1] "hr=" "4.1"
D9V2, continuous
                              vv
clus                           STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III
  AMP PEAK  9(12Q15) MUTATED          0        0         0         9         0
  AMP PEAK  9(12Q15) WILD-TYPE        2        4        11        41         2
                              vv
clus                           STAGE IV
  AMP PEAK  9(12Q15) MUTATED          0
  AMP PEAK  9(12Q15) WILD-TYPE        3
D9V3, multiclass
                              vv
clus                           T1+T2 T3+T4
  AMP PEAK  9(12Q15) MUTATED       0     9
  AMP PEAK  9(12Q15) WILD-TYPE     7    56
D9V4, multiclass
       clus
vv      AMP PEAK  9(12Q15) MUTATED AMP PEAK  9(12Q15) WILD-TYPE
  T1+T2                          0                            7
  T3+T4                          9                           56
D9V5, binary
                              cls
clus                            0  1
  AMP PEAK  9(12Q15) MUTATED    0  9
  AMP PEAK  9(12Q15) WILD-TYPE 18 44
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK  9(12Q15) MUTATED      0    9
  AMP PEAK  9(12Q15) WILD-TYPE   18   44
   clus
vv  AMP PEAK  9(12Q15) MUTATED AMP PEAK  9(12Q15) WILD-TYPE
  0                          0                           18
  1                          9                           44
                              vv
clus                           M0 M1 MX
  AMP PEAK  9(12Q15) MUTATED    5  0  4
  AMP PEAK  9(12Q15) WILD-TYPE 34  3 26
D9V6, multiclass
    clus
vv   AMP PEAK  9(12Q15) MUTATED AMP PEAK  9(12Q15) WILD-TYPE
  M0                          5                           34
  M1                          0                            3
  MX                          4                           26
D9V7, binary
                              cls
clus                            0  1
  AMP PEAK  9(12Q15) MUTATED    2  7
  AMP PEAK  9(12Q15) WILD-TYPE 34 29
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK  9(12Q15) MUTATED      2    7
  AMP PEAK  9(12Q15) WILD-TYPE   34   29
        clus
vv       AMP PEAK  9(12Q15) MUTATED AMP PEAK  9(12Q15) WILD-TYPE
  FEMALE                          2                           34
  MALE                            7                           29
                              vv
clus                           PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  AMP PEAK  9(12Q15) MUTATED                                     7
  AMP PEAK  9(12Q15) WILD-TYPE                                  57
                              vv
clus                           PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  AMP PEAK  9(12Q15) MUTATED                                       2
  AMP PEAK  9(12Q15) WILD-TYPE                                     3
                              vv
clus                           PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  AMP PEAK  9(12Q15) MUTATED                                                  0
  AMP PEAK  9(12Q15) WILD-TYPE                                                2
D9V8, multiclass
                                                  clus
vv                                                 AMP PEAK  9(12Q15) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                       7
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                     2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                          0
                                                  clus
vv                                                 AMP PEAK  9(12Q15) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                        57
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                       3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                            2
D9V9, continuous
D9V10, continuous
                              vv
clus                           R0 R1 RX
  AMP PEAK  9(12Q15) MUTATED    3  5  1
  AMP PEAK  9(12Q15) WILD-TYPE 40 19  1
D9V11, multiclass
    clus
vv   AMP PEAK  9(12Q15) MUTATED AMP PEAK  9(12Q15) WILD-TYPE
  R0                          3                           40
  R1                          5                           19
  RX                          1                            1
D9V12, continuous

Clustering(10) Variable = AMP PEAK 11(17Q21.32) MUTATION ANALYSIS
D10V1, survival
                                 sevent
clus2                              0  1
  AMP PEAK 11(17Q21.32) MUTATED    6  2
  AMP PEAK 11(17Q21.32) WILD-TYPE 34 27
  AMP PEAK 11(17Q21.32) MUTATED AMP PEAK 11(17Q21.32) WILD-TYPE 
                              8                              61 
  AMP PEAK 11(17Q21.32) MUTATED AMP PEAK 11(17Q21.32) WILD-TYPE 
                              2                              27 
$`AMP PEAK 11(17Q21.32) MUTATED`
TCGA-FB-A545 TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7922 TCGA-HZ-A4BH TCGA-IB-7646 
       12.66        13.02         7.89         0.13         6.38         4.77 
TCGA-IB-7891 TCGA-IB-7893 
       16.04         3.85 

$`AMP PEAK 11(17Q21.32) WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 
        0.13         2.47         0.03         5.46         2.01        36.20 
TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7923 
       20.81        12.89         7.66         0.92         0.66         0.26 
TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 
       12.13        11.87         0.26         0.62         0.79         0.69 
TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 TCGA-HZ-8638 
        3.95         0.92         0.53         0.10         0.16         2.99 
TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7647 
        0.76         0.95         1.51        11.41        49.38        21.90 
TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 
       15.35        19.82        15.65        27.98         4.04         3.62 
TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 
       43.79        15.81        19.66        15.98         0.56        17.16 
TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG 
       10.82         9.86         7.20        15.12         0.26         1.35 
TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E 
        4.18         3.62         8.12        13.68        16.80        14.14 
TCGA-US-A77J 
       18.67 

  AMP PEAK 11(17Q21.32) MUTATED AMP PEAK 11(17Q21.32) WILD-TYPE 
                           0.13                            0.03 
  AMP PEAK 11(17Q21.32) MUTATED AMP PEAK 11(17Q21.32) WILD-TYPE 
                          16.04                           49.38 
  AMP PEAK 11(17Q21.32) MUTATED AMP PEAK 11(17Q21.32) WILD-TYPE 
                          7.135                           7.200 
[1] "0.1 - 16.0 (7.1)" "0.0 - 49.4 (7.2)"
                     TCGA-F2-6879                      TCGA-F2-6880 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-F2-7273                      TCGA-F2-7276 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-F2-A44G                      TCGA-F2-A44H 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-FB-A4P5                      TCGA-FB-A545 
"AMP PEAK 11(17Q21.32) WILD-TYPE"   "AMP PEAK 11(17Q21.32) MUTATED" 
                     TCGA-FB-A5VM                      TCGA-FB-A78T 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-FB-A7DR                      TCGA-FZ-5920 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-FZ-5922                      TCGA-FZ-5923 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-H6-8124                      TCGA-H6-A45N 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-H8-A6C1                      TCGA-HZ-7289 
  "AMP PEAK 11(17Q21.32) MUTATED"   "AMP PEAK 11(17Q21.32) MUTATED" 
                     TCGA-HZ-7918                      TCGA-HZ-7919 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-HZ-7922                      TCGA-HZ-7923 
  "AMP PEAK 11(17Q21.32) MUTATED" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-HZ-7924                      TCGA-HZ-7925 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-HZ-7926                      TCGA-HZ-8001 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-HZ-8002                      TCGA-HZ-8003 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-HZ-8005                      TCGA-HZ-8315 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-HZ-8317                      TCGA-HZ-8519 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-HZ-8636                      TCGA-HZ-8638 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-HZ-A49G                      TCGA-HZ-A49H 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-HZ-A4BH                      TCGA-HZ-A4BK 
  "AMP PEAK 11(17Q21.32) MUTATED" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-IB-7644                      TCGA-IB-7645 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-IB-7646                      TCGA-IB-7647 
  "AMP PEAK 11(17Q21.32) MUTATED" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-IB-7649                      TCGA-IB-7651 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-IB-7652                      TCGA-IB-7885 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-IB-7886                      TCGA-IB-7887 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-IB-7888                      TCGA-IB-7889 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-IB-7890                      TCGA-IB-7891 
"AMP PEAK 11(17Q21.32) WILD-TYPE"   "AMP PEAK 11(17Q21.32) MUTATED" 
                     TCGA-IB-7893                      TCGA-IB-7897 
  "AMP PEAK 11(17Q21.32) MUTATED" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-IB-8126                      TCGA-IB-8127 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-IB-A5SO                      TCGA-IB-A5SP 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-IB-A5SQ                      TCGA-IB-A5SS 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-IB-A5ST                      TCGA-IB-A6UG 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-LB-A7SX                      TCGA-OE-A75W 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-PZ-A5RE                      TCGA-Q3-A5QY 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-US-A779                      TCGA-US-A77E 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-US-A77J 
"AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-F2-6879                      TCGA-F2-6880 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-F2-7273                      TCGA-F2-7276 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-F2-A44G                      TCGA-F2-A44H 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-FB-A4P5                      TCGA-FB-A545 
"AMP PEAK 11(17Q21.32) WILD-TYPE"   "AMP PEAK 11(17Q21.32) MUTATED" 
                     TCGA-FB-A5VM                      TCGA-FB-A78T 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-FB-A7DR                      TCGA-FZ-5920 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-FZ-5922                      TCGA-FZ-5923 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-H6-8124                      TCGA-H6-A45N 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-H8-A6C1                      TCGA-HZ-7289 
  "AMP PEAK 11(17Q21.32) MUTATED"   "AMP PEAK 11(17Q21.32) MUTATED" 
                     TCGA-HZ-7918                      TCGA-HZ-7919 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-HZ-7922                      TCGA-HZ-7923 
  "AMP PEAK 11(17Q21.32) MUTATED" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-HZ-7924                      TCGA-HZ-7925 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-HZ-7926                      TCGA-HZ-8001 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-HZ-8002                      TCGA-HZ-8003 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-HZ-8005                      TCGA-HZ-8315 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-HZ-8317                      TCGA-HZ-8519 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-HZ-8636                      TCGA-HZ-8638 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-HZ-A49G                      TCGA-HZ-A49H 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-HZ-A4BH                      TCGA-HZ-A4BK 
  "AMP PEAK 11(17Q21.32) MUTATED" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-IB-7644                      TCGA-IB-7645 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-IB-7646                      TCGA-IB-7647 
  "AMP PEAK 11(17Q21.32) MUTATED" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-IB-7649                      TCGA-IB-7651 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-IB-7652                      TCGA-IB-7885 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-IB-7886                      TCGA-IB-7887 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-IB-7888                      TCGA-IB-7889 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-IB-7890                      TCGA-IB-7891 
"AMP PEAK 11(17Q21.32) WILD-TYPE"   "AMP PEAK 11(17Q21.32) MUTATED" 
                     TCGA-IB-7893                      TCGA-IB-7897 
  "AMP PEAK 11(17Q21.32) MUTATED" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-IB-8126                      TCGA-IB-8127 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-IB-A5SO                      TCGA-IB-A5SP 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-IB-A5SQ                      TCGA-IB-A5SS 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-IB-A5ST                      TCGA-IB-A6UG 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-LB-A7SX                      TCGA-OE-A75W 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-PZ-A5RE                      TCGA-Q3-A5QY 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-US-A779                      TCGA-US-A77E 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-US-A77J 
"AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-F2-6879                      TCGA-F2-6880 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-F2-7273                      TCGA-F2-7276 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-F2-A44G                      TCGA-F2-A44H 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-FB-A4P5                      TCGA-FB-A545 
"AMP PEAK 11(17Q21.32) WILD-TYPE"   "AMP PEAK 11(17Q21.32) MUTATED" 
                     TCGA-FB-A5VM                      TCGA-FB-A78T 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-FB-A7DR                      TCGA-FZ-5920 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-FZ-5922                      TCGA-FZ-5923 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-H6-8124                      TCGA-H6-A45N 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-H8-A6C1                      TCGA-HZ-7289 
  "AMP PEAK 11(17Q21.32) MUTATED"   "AMP PEAK 11(17Q21.32) MUTATED" 
                     TCGA-HZ-7918                      TCGA-HZ-7919 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-HZ-7922                      TCGA-HZ-7923 
  "AMP PEAK 11(17Q21.32) MUTATED" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-HZ-7924                      TCGA-HZ-7925 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-HZ-7926                      TCGA-HZ-8001 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-HZ-8002                      TCGA-HZ-8003 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-HZ-8005                      TCGA-HZ-8315 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-HZ-8317                      TCGA-HZ-8519 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-HZ-8636                      TCGA-HZ-8638 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-HZ-A49G                      TCGA-HZ-A49H 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-HZ-A4BH                      TCGA-HZ-A4BK 
  "AMP PEAK 11(17Q21.32) MUTATED" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-IB-7644                      TCGA-IB-7645 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-IB-7646                      TCGA-IB-7647 
  "AMP PEAK 11(17Q21.32) MUTATED" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-IB-7649                      TCGA-IB-7651 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-IB-7652                      TCGA-IB-7885 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-IB-7886                      TCGA-IB-7887 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-IB-7888                      TCGA-IB-7889 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-IB-7890                      TCGA-IB-7891 
"AMP PEAK 11(17Q21.32) WILD-TYPE"   "AMP PEAK 11(17Q21.32) MUTATED" 
                     TCGA-IB-7893                      TCGA-IB-7897 
  "AMP PEAK 11(17Q21.32) MUTATED" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-IB-8126                      TCGA-IB-8127 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-IB-A5SO                      TCGA-IB-A5SP 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-IB-A5SQ                      TCGA-IB-A5SS 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-IB-A5ST                      TCGA-IB-A6UG 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-LB-A7SX                      TCGA-OE-A75W 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-PZ-A5RE                      TCGA-Q3-A5QY 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-US-A779                      TCGA-US-A77E 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-US-A77J 
"AMP PEAK 11(17Q21.32) WILD-TYPE" 
[1] "hr=" "1.1"
D10V2, continuous
                                 vv
clus                              STAGE IA STAGE IB STAGE IIA STAGE IIB
  AMP PEAK 11(17Q21.32) MUTATED          0        0         2         6
  AMP PEAK 11(17Q21.32) WILD-TYPE        2        4         9        44
                                 vv
clus                              STAGE III STAGE IV
  AMP PEAK 11(17Q21.32) MUTATED           0        0
  AMP PEAK 11(17Q21.32) WILD-TYPE         2        3
D10V3, multiclass
                                 vv
clus                              T1+T2 T3+T4
  AMP PEAK 11(17Q21.32) MUTATED       0     8
  AMP PEAK 11(17Q21.32) WILD-TYPE     7    57
D10V4, multiclass
       clus
vv      AMP PEAK 11(17Q21.32) MUTATED AMP PEAK 11(17Q21.32) WILD-TYPE
  T1+T2                             0                               7
  T3+T4                             8                              57
D10V5, binary
                                 cls
clus                               0  1
  AMP PEAK 11(17Q21.32) MUTATED    2  6
  AMP PEAK 11(17Q21.32) WILD-TYPE 16 47
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 11(17Q21.32) MUTATED      2    6
  AMP PEAK 11(17Q21.32) WILD-TYPE   16   47
   clus
vv  AMP PEAK 11(17Q21.32) MUTATED AMP PEAK 11(17Q21.32) WILD-TYPE
  0                             2                              16
  1                             6                              47
                                 vv
clus                              M0 M1 MX
  AMP PEAK 11(17Q21.32) MUTATED    4  0  4
  AMP PEAK 11(17Q21.32) WILD-TYPE 35  3 26
D10V6, multiclass
    clus
vv   AMP PEAK 11(17Q21.32) MUTATED AMP PEAK 11(17Q21.32) WILD-TYPE
  M0                             4                              35
  M1                             0                               3
  MX                             4                              26
D10V7, binary
                                 cls
clus                               0  1
  AMP PEAK 11(17Q21.32) MUTATED    2  6
  AMP PEAK 11(17Q21.32) WILD-TYPE 34 30
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 11(17Q21.32) MUTATED      2    6
  AMP PEAK 11(17Q21.32) WILD-TYPE   34   30
        clus
vv       AMP PEAK 11(17Q21.32) MUTATED AMP PEAK 11(17Q21.32) WILD-TYPE
  FEMALE                             2                              34
  MALE                               6                              30
                                 vv
clus                              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  AMP PEAK 11(17Q21.32) MUTATED                                     6
  AMP PEAK 11(17Q21.32) WILD-TYPE                                  58
                                 vv
clus                              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  AMP PEAK 11(17Q21.32) MUTATED                                       2
  AMP PEAK 11(17Q21.32) WILD-TYPE                                     3
                                 vv
clus                              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  AMP PEAK 11(17Q21.32) MUTATED                                                  0
  AMP PEAK 11(17Q21.32) WILD-TYPE                                                2
D10V8, multiclass
                                                  clus
vv                                                 AMP PEAK 11(17Q21.32) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                          6
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                        2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                             0
                                                  clus
vv                                                 AMP PEAK 11(17Q21.32) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                           58
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                          3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                               2
D10V9, continuous
[1] "Remove cluster labels:"        "AMP PEAK 11(17Q21.32) MUTATED"
clus
  AMP PEAK 11(17Q21.32) MUTATED AMP PEAK 11(17Q21.32) WILD-TYPE 
                              2                              19 
                     TCGA-F2-6880                      TCGA-FB-A4P5 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-FB-A5VM                      TCGA-FB-A78T 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-FB-A7DR                      TCGA-H6-8124 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-H6-A45N                      TCGA-IB-7644 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-IB-7649                      TCGA-IB-7651 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-IB-7885                      TCGA-IB-7886 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-IB-7887                      TCGA-IB-8126 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-IB-8127                      TCGA-IB-A5SS 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-IB-A6UG                      TCGA-LB-A7SX 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-OE-A75W 
"AMP PEAK 11(17Q21.32) WILD-TYPE" 
D10V10, continuous
[1] "Remove cluster labels:"        "AMP PEAK 11(17Q21.32) MUTATED"
clus
  AMP PEAK 11(17Q21.32) MUTATED AMP PEAK 11(17Q21.32) WILD-TYPE 
                              2                              16 
                     TCGA-FB-A4P5                      TCGA-FB-A5VM 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-FB-A78T                      TCGA-FB-A7DR 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-H6-8124                      TCGA-IB-7644 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-IB-7649                      TCGA-IB-7651 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-IB-7885                      TCGA-IB-7886 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-IB-8126                      TCGA-IB-8127 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-IB-A5SS                      TCGA-IB-A6UG 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                     TCGA-LB-A7SX                      TCGA-OE-A75W 
"AMP PEAK 11(17Q21.32) WILD-TYPE" "AMP PEAK 11(17Q21.32) WILD-TYPE" 
                                 vv
clus                              R0 R1 RX
  AMP PEAK 11(17Q21.32) MUTATED    4  2  1
  AMP PEAK 11(17Q21.32) WILD-TYPE 39 22  1
D10V11, multiclass
    clus
vv   AMP PEAK 11(17Q21.32) MUTATED AMP PEAK 11(17Q21.32) WILD-TYPE
  R0                             4                              39
  R1                             2                              22
  RX                             1                               1
D10V12, continuous

Clustering(11) Variable = AMP PEAK 12(18Q11.2) MUTATION ANALYSIS
D11V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 12(18Q11.2) MUTATED   14  8
  AMP PEAK 12(18Q11.2) WILD-TYPE 26 21
  AMP PEAK 12(18Q11.2) MUTATED AMP PEAK 12(18Q11.2) WILD-TYPE 
                            22                             47 
  AMP PEAK 12(18Q11.2) MUTATED AMP PEAK 12(18Q11.2) WILD-TYPE 
                             8                             21 
$`AMP PEAK 12(18Q11.2) MUTATED`
TCGA-F2-6879 TCGA-F2-A44G TCGA-FB-A545 TCGA-FB-A78T TCGA-FZ-5923 TCGA-H6-8124 
       10.98         5.03        12.66         0.03        20.81        12.89 
TCGA-H8-A6C1 TCGA-HZ-7919 TCGA-HZ-7925 TCGA-HZ-8636 TCGA-HZ-A4BK TCGA-IB-7644 
       13.02         0.66        11.87         0.16         1.51        11.41 
TCGA-IB-7649 TCGA-IB-7886 TCGA-IB-7893 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO 
       15.35         4.04         3.85         0.56        17.16        10.82 
TCGA-IB-A5SP TCGA-IB-A6UG TCGA-OE-A75W TCGA-PZ-A5RE 
        9.86         1.35         3.62         8.12 

$`AMP PEAK 12(18Q11.2) WILD-TYPE`
TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44H TCGA-FB-A4P5 TCGA-FB-A5VM 
        9.70        11.84         7.10        19.27         0.13         2.47 
TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 TCGA-H6-A45N TCGA-HZ-7289 TCGA-HZ-7918 
        5.46         2.01        36.20         7.66         7.89         0.92 
TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 
        0.13         0.26        12.13         0.26         0.62         0.79 
TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8638 
        0.69         3.95         0.92         0.53         0.10         2.99 
TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 
        0.76         0.95         6.38        49.38         4.77        21.90 
TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 
       19.82        15.65        27.98         3.62        43.79        15.81 
TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7897 TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
       19.66        16.04        15.98         7.20        15.12         0.26 
TCGA-LB-A7SX TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        4.18        13.68        16.80        14.14        18.67 

  AMP PEAK 12(18Q11.2) MUTATED AMP PEAK 12(18Q11.2) WILD-TYPE 
                          0.03                           0.10 
  AMP PEAK 12(18Q11.2) MUTATED AMP PEAK 12(18Q11.2) WILD-TYPE 
                         20.81                          49.38 
  AMP PEAK 12(18Q11.2) MUTATED AMP PEAK 12(18Q11.2) WILD-TYPE 
                          8.99                           7.10 
[1] "0.0 - 20.8 (9.0)" "0.1 - 49.4 (7.1)"
                    TCGA-F2-6879                     TCGA-F2-6880 
  "AMP PEAK 12(18Q11.2) MUTATED" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"AMP PEAK 12(18Q11.2) WILD-TYPE" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
  "AMP PEAK 12(18Q11.2) MUTATED" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"AMP PEAK 12(18Q11.2) WILD-TYPE"   "AMP PEAK 12(18Q11.2) MUTATED" 
                    TCGA-FB-A5VM                     TCGA-FB-A78T 
"AMP PEAK 12(18Q11.2) WILD-TYPE"   "AMP PEAK 12(18Q11.2) MUTATED" 
                    TCGA-FB-A7DR                     TCGA-FZ-5920 
"AMP PEAK 12(18Q11.2) WILD-TYPE" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-FZ-5922                     TCGA-FZ-5923 
"AMP PEAK 12(18Q11.2) WILD-TYPE"   "AMP PEAK 12(18Q11.2) MUTATED" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
  "AMP PEAK 12(18Q11.2) MUTATED" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-H8-A6C1                     TCGA-HZ-7289 
  "AMP PEAK 12(18Q11.2) MUTATED" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-7918                     TCGA-HZ-7919 
"AMP PEAK 12(18Q11.2) WILD-TYPE"   "AMP PEAK 12(18Q11.2) MUTATED" 
                    TCGA-HZ-7922                     TCGA-HZ-7923 
"AMP PEAK 12(18Q11.2) WILD-TYPE" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-7924                     TCGA-HZ-7925 
"AMP PEAK 12(18Q11.2) WILD-TYPE"   "AMP PEAK 12(18Q11.2) MUTATED" 
                    TCGA-HZ-7926                     TCGA-HZ-8001 
"AMP PEAK 12(18Q11.2) WILD-TYPE" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-8002                     TCGA-HZ-8003 
"AMP PEAK 12(18Q11.2) WILD-TYPE" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-8005                     TCGA-HZ-8315 
"AMP PEAK 12(18Q11.2) WILD-TYPE" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-8317                     TCGA-HZ-8519 
"AMP PEAK 12(18Q11.2) WILD-TYPE" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-8636                     TCGA-HZ-8638 
  "AMP PEAK 12(18Q11.2) MUTATED" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-A49G                     TCGA-HZ-A49H 
"AMP PEAK 12(18Q11.2) WILD-TYPE" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-A4BH                     TCGA-HZ-A4BK 
"AMP PEAK 12(18Q11.2) WILD-TYPE"   "AMP PEAK 12(18Q11.2) MUTATED" 
                    TCGA-IB-7644                     TCGA-IB-7645 
  "AMP PEAK 12(18Q11.2) MUTATED" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-IB-7646                     TCGA-IB-7647 
"AMP PEAK 12(18Q11.2) WILD-TYPE" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-IB-7649                     TCGA-IB-7651 
  "AMP PEAK 12(18Q11.2) MUTATED" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-IB-7652                     TCGA-IB-7885 
"AMP PEAK 12(18Q11.2) WILD-TYPE" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-IB-7886                     TCGA-IB-7887 
  "AMP PEAK 12(18Q11.2) MUTATED" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-IB-7888                     TCGA-IB-7889 
"AMP PEAK 12(18Q11.2) WILD-TYPE" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-IB-7890                     TCGA-IB-7891 
"AMP PEAK 12(18Q11.2) WILD-TYPE" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-IB-7893                     TCGA-IB-7897 
  "AMP PEAK 12(18Q11.2) MUTATED" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-IB-8126                     TCGA-IB-8127 
  "AMP PEAK 12(18Q11.2) MUTATED"   "AMP PEAK 12(18Q11.2) MUTATED" 
                    TCGA-IB-A5SO                     TCGA-IB-A5SP 
  "AMP PEAK 12(18Q11.2) MUTATED"   "AMP PEAK 12(18Q11.2) MUTATED" 
                    TCGA-IB-A5SQ                     TCGA-IB-A5SS 
"AMP PEAK 12(18Q11.2) WILD-TYPE" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-IB-A5ST                     TCGA-IB-A6UG 
"AMP PEAK 12(18Q11.2) WILD-TYPE"   "AMP PEAK 12(18Q11.2) MUTATED" 
                    TCGA-LB-A7SX                     TCGA-OE-A75W 
"AMP PEAK 12(18Q11.2) WILD-TYPE"   "AMP PEAK 12(18Q11.2) MUTATED" 
                    TCGA-PZ-A5RE                     TCGA-Q3-A5QY 
  "AMP PEAK 12(18Q11.2) MUTATED" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-US-A779                     TCGA-US-A77E 
"AMP PEAK 12(18Q11.2) WILD-TYPE" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-US-A77J 
"AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-F2-6879                     TCGA-F2-6880 
  "AMP PEAK 12(18Q11.2) MUTATED" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"AMP PEAK 12(18Q11.2) WILD-TYPE" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
  "AMP PEAK 12(18Q11.2) MUTATED" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"AMP PEAK 12(18Q11.2) WILD-TYPE"   "AMP PEAK 12(18Q11.2) MUTATED" 
                    TCGA-FB-A5VM                     TCGA-FB-A78T 
"AMP PEAK 12(18Q11.2) WILD-TYPE"   "AMP PEAK 12(18Q11.2) MUTATED" 
                    TCGA-FB-A7DR                     TCGA-FZ-5920 
"AMP PEAK 12(18Q11.2) WILD-TYPE" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-FZ-5922                     TCGA-FZ-5923 
"AMP PEAK 12(18Q11.2) WILD-TYPE"   "AMP PEAK 12(18Q11.2) MUTATED" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
  "AMP PEAK 12(18Q11.2) MUTATED" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-H8-A6C1                     TCGA-HZ-7289 
  "AMP PEAK 12(18Q11.2) MUTATED" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-7918                     TCGA-HZ-7919 
"AMP PEAK 12(18Q11.2) WILD-TYPE"   "AMP PEAK 12(18Q11.2) MUTATED" 
                    TCGA-HZ-7922                     TCGA-HZ-7923 
"AMP PEAK 12(18Q11.2) WILD-TYPE" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-7924                     TCGA-HZ-7925 
"AMP PEAK 12(18Q11.2) WILD-TYPE"   "AMP PEAK 12(18Q11.2) MUTATED" 
                    TCGA-HZ-7926                     TCGA-HZ-8001 
"AMP PEAK 12(18Q11.2) WILD-TYPE" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-8002                     TCGA-HZ-8003 
"AMP PEAK 12(18Q11.2) WILD-TYPE" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-8005                     TCGA-HZ-8315 
"AMP PEAK 12(18Q11.2) WILD-TYPE" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-8317                     TCGA-HZ-8519 
"AMP PEAK 12(18Q11.2) WILD-TYPE" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-8636                     TCGA-HZ-8638 
  "AMP PEAK 12(18Q11.2) MUTATED" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-A49G                     TCGA-HZ-A49H 
"AMP PEAK 12(18Q11.2) WILD-TYPE" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-A4BH                     TCGA-HZ-A4BK 
"AMP PEAK 12(18Q11.2) WILD-TYPE"   "AMP PEAK 12(18Q11.2) MUTATED" 
                    TCGA-IB-7644                     TCGA-IB-7645 
  "AMP PEAK 12(18Q11.2) MUTATED" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-IB-7646                     TCGA-IB-7647 
"AMP PEAK 12(18Q11.2) WILD-TYPE" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-IB-7649                     TCGA-IB-7651 
  "AMP PEAK 12(18Q11.2) MUTATED" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-IB-7652                     TCGA-IB-7885 
"AMP PEAK 12(18Q11.2) WILD-TYPE" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-IB-7886                     TCGA-IB-7887 
  "AMP PEAK 12(18Q11.2) MUTATED" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-IB-7888                     TCGA-IB-7889 
"AMP PEAK 12(18Q11.2) WILD-TYPE" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-IB-7890                     TCGA-IB-7891 
"AMP PEAK 12(18Q11.2) WILD-TYPE" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-IB-7893                     TCGA-IB-7897 
  "AMP PEAK 12(18Q11.2) MUTATED" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-IB-8126                     TCGA-IB-8127 
  "AMP PEAK 12(18Q11.2) MUTATED"   "AMP PEAK 12(18Q11.2) MUTATED" 
                    TCGA-IB-A5SO                     TCGA-IB-A5SP 
  "AMP PEAK 12(18Q11.2) MUTATED"   "AMP PEAK 12(18Q11.2) MUTATED" 
                    TCGA-IB-A5SQ                     TCGA-IB-A5SS 
"AMP PEAK 12(18Q11.2) WILD-TYPE" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-IB-A5ST                     TCGA-IB-A6UG 
"AMP PEAK 12(18Q11.2) WILD-TYPE"   "AMP PEAK 12(18Q11.2) MUTATED" 
                    TCGA-LB-A7SX                     TCGA-OE-A75W 
"AMP PEAK 12(18Q11.2) WILD-TYPE"   "AMP PEAK 12(18Q11.2) MUTATED" 
                    TCGA-PZ-A5RE                     TCGA-Q3-A5QY 
  "AMP PEAK 12(18Q11.2) MUTATED" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-US-A779                     TCGA-US-A77E 
"AMP PEAK 12(18Q11.2) WILD-TYPE" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-US-A77J 
"AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-F2-6879                     TCGA-F2-6880 
  "AMP PEAK 12(18Q11.2) MUTATED" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"AMP PEAK 12(18Q11.2) WILD-TYPE" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
  "AMP PEAK 12(18Q11.2) MUTATED" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"AMP PEAK 12(18Q11.2) WILD-TYPE"   "AMP PEAK 12(18Q11.2) MUTATED" 
                    TCGA-FB-A5VM                     TCGA-FB-A78T 
"AMP PEAK 12(18Q11.2) WILD-TYPE"   "AMP PEAK 12(18Q11.2) MUTATED" 
                    TCGA-FB-A7DR                     TCGA-FZ-5920 
"AMP PEAK 12(18Q11.2) WILD-TYPE" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-FZ-5922                     TCGA-FZ-5923 
"AMP PEAK 12(18Q11.2) WILD-TYPE"   "AMP PEAK 12(18Q11.2) MUTATED" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
  "AMP PEAK 12(18Q11.2) MUTATED" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-H8-A6C1                     TCGA-HZ-7289 
  "AMP PEAK 12(18Q11.2) MUTATED" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-7918                     TCGA-HZ-7919 
"AMP PEAK 12(18Q11.2) WILD-TYPE"   "AMP PEAK 12(18Q11.2) MUTATED" 
                    TCGA-HZ-7922                     TCGA-HZ-7923 
"AMP PEAK 12(18Q11.2) WILD-TYPE" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-7924                     TCGA-HZ-7925 
"AMP PEAK 12(18Q11.2) WILD-TYPE"   "AMP PEAK 12(18Q11.2) MUTATED" 
                    TCGA-HZ-7926                     TCGA-HZ-8001 
"AMP PEAK 12(18Q11.2) WILD-TYPE" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-8002                     TCGA-HZ-8003 
"AMP PEAK 12(18Q11.2) WILD-TYPE" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-8005                     TCGA-HZ-8315 
"AMP PEAK 12(18Q11.2) WILD-TYPE" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-8317                     TCGA-HZ-8519 
"AMP PEAK 12(18Q11.2) WILD-TYPE" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-8636                     TCGA-HZ-8638 
  "AMP PEAK 12(18Q11.2) MUTATED" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-A49G                     TCGA-HZ-A49H 
"AMP PEAK 12(18Q11.2) WILD-TYPE" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-A4BH                     TCGA-HZ-A4BK 
"AMP PEAK 12(18Q11.2) WILD-TYPE"   "AMP PEAK 12(18Q11.2) MUTATED" 
                    TCGA-IB-7644                     TCGA-IB-7645 
  "AMP PEAK 12(18Q11.2) MUTATED" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-IB-7646                     TCGA-IB-7647 
"AMP PEAK 12(18Q11.2) WILD-TYPE" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-IB-7649                     TCGA-IB-7651 
  "AMP PEAK 12(18Q11.2) MUTATED" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-IB-7652                     TCGA-IB-7885 
"AMP PEAK 12(18Q11.2) WILD-TYPE" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-IB-7886                     TCGA-IB-7887 
  "AMP PEAK 12(18Q11.2) MUTATED" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-IB-7888                     TCGA-IB-7889 
"AMP PEAK 12(18Q11.2) WILD-TYPE" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-IB-7890                     TCGA-IB-7891 
"AMP PEAK 12(18Q11.2) WILD-TYPE" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-IB-7893                     TCGA-IB-7897 
  "AMP PEAK 12(18Q11.2) MUTATED" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-IB-8126                     TCGA-IB-8127 
  "AMP PEAK 12(18Q11.2) MUTATED"   "AMP PEAK 12(18Q11.2) MUTATED" 
                    TCGA-IB-A5SO                     TCGA-IB-A5SP 
  "AMP PEAK 12(18Q11.2) MUTATED"   "AMP PEAK 12(18Q11.2) MUTATED" 
                    TCGA-IB-A5SQ                     TCGA-IB-A5SS 
"AMP PEAK 12(18Q11.2) WILD-TYPE" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-IB-A5ST                     TCGA-IB-A6UG 
"AMP PEAK 12(18Q11.2) WILD-TYPE"   "AMP PEAK 12(18Q11.2) MUTATED" 
                    TCGA-LB-A7SX                     TCGA-OE-A75W 
"AMP PEAK 12(18Q11.2) WILD-TYPE"   "AMP PEAK 12(18Q11.2) MUTATED" 
                    TCGA-PZ-A5RE                     TCGA-Q3-A5QY 
  "AMP PEAK 12(18Q11.2) MUTATED" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-US-A779                     TCGA-US-A77E 
"AMP PEAK 12(18Q11.2) WILD-TYPE" "AMP PEAK 12(18Q11.2) WILD-TYPE" 
                    TCGA-US-A77J 
"AMP PEAK 12(18Q11.2) WILD-TYPE" 
[1] "hr=" "1.4"
D11V2, continuous
                                vv
clus                             STAGE IA STAGE IB STAGE IIA STAGE IIB
  AMP PEAK 12(18Q11.2) MUTATED          0        0         4        14
  AMP PEAK 12(18Q11.2) WILD-TYPE        2        4         7        36
                                vv
clus                             STAGE III STAGE IV
  AMP PEAK 12(18Q11.2) MUTATED           1        3
  AMP PEAK 12(18Q11.2) WILD-TYPE         1        0
D11V3, multiclass
                                vv
clus                             T1+T2 T3+T4
  AMP PEAK 12(18Q11.2) MUTATED       0    22
  AMP PEAK 12(18Q11.2) WILD-TYPE     7    43
D11V4, multiclass
       clus
vv      AMP PEAK 12(18Q11.2) MUTATED AMP PEAK 12(18Q11.2) WILD-TYPE
  T1+T2                            0                              7
  T3+T4                           22                             43
D11V5, binary
                                cls
clus                              0  1
  AMP PEAK 12(18Q11.2) MUTATED    5 17
  AMP PEAK 12(18Q11.2) WILD-TYPE 13 36
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 12(18Q11.2) MUTATED      5   17
  AMP PEAK 12(18Q11.2) WILD-TYPE   13   36
   clus
vv  AMP PEAK 12(18Q11.2) MUTATED AMP PEAK 12(18Q11.2) WILD-TYPE
  0                            5                             13
  1                           17                             36
                                vv
clus                             M0 M1 MX
  AMP PEAK 12(18Q11.2) MUTATED   15  3  4
  AMP PEAK 12(18Q11.2) WILD-TYPE 24  0 26
D11V6, multiclass
    clus
vv   AMP PEAK 12(18Q11.2) MUTATED AMP PEAK 12(18Q11.2) WILD-TYPE
  M0                           15                             24
  M1                            3                              0
  MX                            4                             26
D11V7, binary
                                cls
clus                              0  1
  AMP PEAK 12(18Q11.2) MUTATED   10 12
  AMP PEAK 12(18Q11.2) WILD-TYPE 26 24
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 12(18Q11.2) MUTATED     10   12
  AMP PEAK 12(18Q11.2) WILD-TYPE   26   24
        clus
vv       AMP PEAK 12(18Q11.2) MUTATED AMP PEAK 12(18Q11.2) WILD-TYPE
  FEMALE                           10                             26
  MALE                             12                             24
                                vv
clus                             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  AMP PEAK 12(18Q11.2) MUTATED                                    19
  AMP PEAK 12(18Q11.2) WILD-TYPE                                  45
                                vv
clus                             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  AMP PEAK 12(18Q11.2) MUTATED                                       2
  AMP PEAK 12(18Q11.2) WILD-TYPE                                     3
                                vv
clus                             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  AMP PEAK 12(18Q11.2) MUTATED                                                  0
  AMP PEAK 12(18Q11.2) WILD-TYPE                                                2
D11V8, multiclass
                                                  clus
vv                                                 AMP PEAK 12(18Q11.2) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                        19
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                       2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                            0
                                                  clus
vv                                                 AMP PEAK 12(18Q11.2) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                          45
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                         3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                              2
D11V9, continuous
D11V10, continuous
                                vv
clus                             R0 R1 RX
  AMP PEAK 12(18Q11.2) MUTATED    9 11  0
  AMP PEAK 12(18Q11.2) WILD-TYPE 34 13  2
D11V11, multiclass
    clus
vv   AMP PEAK 12(18Q11.2) MUTATED AMP PEAK 12(18Q11.2) WILD-TYPE
  R0                            9                             34
  R1                           11                             13
  RX                            0                              2
D11V12, continuous

Clustering(12) Variable = AMP PEAK 13(19Q13.2) MUTATION ANALYSIS
D12V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 13(19Q13.2) MUTATED   12  5
  AMP PEAK 13(19Q13.2) WILD-TYPE 28 24
  AMP PEAK 13(19Q13.2) MUTATED AMP PEAK 13(19Q13.2) WILD-TYPE 
                            17                             52 
  AMP PEAK 13(19Q13.2) MUTATED AMP PEAK 13(19Q13.2) WILD-TYPE 
                             5                             24 
$`AMP PEAK 13(19Q13.2) MUTATED`
TCGA-FB-A545 TCGA-FB-A7DR TCGA-FZ-5920 TCGA-H6-8124 TCGA-HZ-7918 TCGA-HZ-7922 
       12.66         5.46         2.01        12.89         0.92         0.13 
TCGA-HZ-8001 TCGA-HZ-A4BH TCGA-IB-7886 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-8127 
        0.62         6.38         4.04        16.04         3.85        17.16 
TCGA-IB-A5SP TCGA-IB-A5SS TCGA-IB-A6UG TCGA-LB-A7SX TCGA-PZ-A5RE 
        9.86        15.12         1.35         4.18         8.12 

$`AMP PEAK 13(19Q13.2) WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-A45N 
        0.13         2.47         0.03        36.20        20.81         7.66 
TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7919 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
       13.02         7.89         0.66         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 
        0.26         0.79         0.69         3.95         0.92         0.53 
TCGA-HZ-8519 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BK 
        0.10         0.16         2.99         0.76         0.95         1.51 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 
       11.41        49.38         4.77        21.90        15.35        19.82 
TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 
       15.65        27.98         3.62        43.79        15.81        19.66 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-A5SO TCGA-IB-A5SQ TCGA-IB-A5ST TCGA-OE-A75W 
       15.98         0.56        10.82         7.20         0.26         3.62 
TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       13.68        16.80        14.14        18.67 

  AMP PEAK 13(19Q13.2) MUTATED AMP PEAK 13(19Q13.2) WILD-TYPE 
                          0.13                           0.03 
  AMP PEAK 13(19Q13.2) MUTATED AMP PEAK 13(19Q13.2) WILD-TYPE 
                         17.16                          49.38 
  AMP PEAK 13(19Q13.2) MUTATED AMP PEAK 13(19Q13.2) WILD-TYPE 
                         5.460                          7.775 
[1] "0.1 - 17.2 (5.5)" "0.0 - 49.4 (7.8)"
                    TCGA-F2-6879                     TCGA-F2-6880 
"AMP PEAK 13(19Q13.2) WILD-TYPE" "AMP PEAK 13(19Q13.2) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"AMP PEAK 13(19Q13.2) WILD-TYPE" "AMP PEAK 13(19Q13.2) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"AMP PEAK 13(19Q13.2) WILD-TYPE" "AMP PEAK 13(19Q13.2) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"AMP PEAK 13(19Q13.2) WILD-TYPE"   "AMP PEAK 13(19Q13.2) MUTATED" 
                    TCGA-FB-A5VM                     TCGA-FB-A78T 
"AMP PEAK 13(19Q13.2) WILD-TYPE" "AMP PEAK 13(19Q13.2) WILD-TYPE" 
                    TCGA-FB-A7DR                     TCGA-FZ-5920 
  "AMP PEAK 13(19Q13.2) MUTATED"   "AMP PEAK 13(19Q13.2) MUTATED" 
                    TCGA-FZ-5922                     TCGA-FZ-5923 
"AMP PEAK 13(19Q13.2) WILD-TYPE" "AMP PEAK 13(19Q13.2) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
  "AMP PEAK 13(19Q13.2) MUTATED" "AMP PEAK 13(19Q13.2) WILD-TYPE" 
                    TCGA-H8-A6C1                     TCGA-HZ-7289 
"AMP PEAK 13(19Q13.2) WILD-TYPE" "AMP PEAK 13(19Q13.2) WILD-TYPE" 
                    TCGA-HZ-7918                     TCGA-HZ-7919 
  "AMP PEAK 13(19Q13.2) MUTATED" "AMP PEAK 13(19Q13.2) WILD-TYPE" 
                    TCGA-HZ-7922                     TCGA-HZ-7923 
  "AMP PEAK 13(19Q13.2) MUTATED" "AMP PEAK 13(19Q13.2) WILD-TYPE" 
                    TCGA-HZ-7924                     TCGA-HZ-7925 
"AMP PEAK 13(19Q13.2) WILD-TYPE" "AMP PEAK 13(19Q13.2) WILD-TYPE" 
                    TCGA-HZ-7926                     TCGA-HZ-8001 
"AMP PEAK 13(19Q13.2) WILD-TYPE"   "AMP PEAK 13(19Q13.2) MUTATED" 
                    TCGA-HZ-8002                     TCGA-HZ-8003 
"AMP PEAK 13(19Q13.2) WILD-TYPE" "AMP PEAK 13(19Q13.2) WILD-TYPE" 
                    TCGA-HZ-8005                     TCGA-HZ-8315 
"AMP PEAK 13(19Q13.2) WILD-TYPE" "AMP PEAK 13(19Q13.2) WILD-TYPE" 
                    TCGA-HZ-8317                     TCGA-HZ-8519 
"AMP PEAK 13(19Q13.2) WILD-TYPE" "AMP PEAK 13(19Q13.2) WILD-TYPE" 
                    TCGA-HZ-8636                     TCGA-HZ-8638 
"AMP PEAK 13(19Q13.2) WILD-TYPE" "AMP PEAK 13(19Q13.2) WILD-TYPE" 
                    TCGA-HZ-A49G                     TCGA-HZ-A49H 
"AMP PEAK 13(19Q13.2) WILD-TYPE" "AMP PEAK 13(19Q13.2) WILD-TYPE" 
                    TCGA-HZ-A4BH                     TCGA-HZ-A4BK 
  "AMP PEAK 13(19Q13.2) MUTATED" "AMP PEAK 13(19Q13.2) WILD-TYPE" 
                    TCGA-IB-7644                     TCGA-IB-7645 
"AMP PEAK 13(19Q13.2) WILD-TYPE" "AMP PEAK 13(19Q13.2) WILD-TYPE" 
                    TCGA-IB-7646                     TCGA-IB-7647 
"AMP PEAK 13(19Q13.2) WILD-TYPE" "AMP PEAK 13(19Q13.2) WILD-TYPE" 
                    TCGA-IB-7649                     TCGA-IB-7651 
"AMP PEAK 13(19Q13.2) WILD-TYPE" "AMP PEAK 13(19Q13.2) WILD-TYPE" 
                    TCGA-IB-7652                     TCGA-IB-7885 
"AMP PEAK 13(19Q13.2) WILD-TYPE" "AMP PEAK 13(19Q13.2) WILD-TYPE" 
                    TCGA-IB-7886                     TCGA-IB-7887 
  "AMP PEAK 13(19Q13.2) MUTATED" "AMP PEAK 13(19Q13.2) WILD-TYPE" 
                    TCGA-IB-7888                     TCGA-IB-7889 
"AMP PEAK 13(19Q13.2) WILD-TYPE" "AMP PEAK 13(19Q13.2) WILD-TYPE" 
                    TCGA-IB-7890                     TCGA-IB-7891 
"AMP PEAK 13(19Q13.2) WILD-TYPE"   "AMP PEAK 13(19Q13.2) MUTATED" 
                    TCGA-IB-7893                     TCGA-IB-7897 
  "AMP PEAK 13(19Q13.2) MUTATED" "AMP PEAK 13(19Q13.2) WILD-TYPE" 
                    TCGA-IB-8126                     TCGA-IB-8127 
"AMP PEAK 13(19Q13.2) WILD-TYPE"   "AMP PEAK 13(19Q13.2) MUTATED" 
                    TCGA-IB-A5SO                     TCGA-IB-A5SP 
"AMP PEAK 13(19Q13.2) WILD-TYPE"   "AMP PEAK 13(19Q13.2) MUTATED" 
                    TCGA-IB-A5SQ                     TCGA-IB-A5SS 
"AMP PEAK 13(19Q13.2) WILD-TYPE"   "AMP PEAK 13(19Q13.2) MUTATED" 
                    TCGA-IB-A5ST                     TCGA-IB-A6UG 
"AMP PEAK 13(19Q13.2) WILD-TYPE"   "AMP PEAK 13(19Q13.2) MUTATED" 
                    TCGA-LB-A7SX                     TCGA-OE-A75W 
  "AMP PEAK 13(19Q13.2) MUTATED" "AMP PEAK 13(19Q13.2) WILD-TYPE" 
                    TCGA-PZ-A5RE                     TCGA-Q3-A5QY 
  "AMP PEAK 13(19Q13.2) MUTATED" "AMP PEAK 13(19Q13.2) WILD-TYPE" 
                    TCGA-US-A779                     TCGA-US-A77E 
"AMP PEAK 13(19Q13.2) WILD-TYPE" "AMP PEAK 13(19Q13.2) WILD-TYPE" 
                    TCGA-US-A77J 
"AMP PEAK 13(19Q13.2) WILD-TYPE" 
                    TCGA-F2-6879                     TCGA-F2-6880 
"AMP PEAK 13(19Q13.2) WILD-TYPE" "AMP PEAK 13(19Q13.2) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"AMP PEAK 13(19Q13.2) WILD-TYPE" "AMP PEAK 13(19Q13.2) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"AMP PEAK 13(19Q13.2) WILD-TYPE" "AMP PEAK 13(19Q13.2) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"AMP PEAK 13(19Q13.2) WILD-TYPE"   "AMP PEAK 13(19Q13.2) MUTATED" 
                    TCGA-FB-A5VM                     TCGA-FB-A78T 
"AMP PEAK 13(19Q13.2) WILD-TYPE" "AMP PEAK 13(19Q13.2) WILD-TYPE" 
                    TCGA-FB-A7DR                     TCGA-FZ-5920 
  "AMP PEAK 13(19Q13.2) MUTATED"   "AMP PEAK 13(19Q13.2) MUTATED" 
                    TCGA-FZ-5922                     TCGA-FZ-5923 
"AMP PEAK 13(19Q13.2) WILD-TYPE" "AMP PEAK 13(19Q13.2) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
  "AMP PEAK 13(19Q13.2) MUTATED" "AMP PEAK 13(19Q13.2) WILD-TYPE" 
                    TCGA-H8-A6C1                     TCGA-HZ-7289 
"AMP PEAK 13(19Q13.2) WILD-TYPE" "AMP PEAK 13(19Q13.2) WILD-TYPE" 
                    TCGA-HZ-7918                     TCGA-HZ-7919 
  "AMP PEAK 13(19Q13.2) MUTATED" "AMP PEAK 13(19Q13.2) WILD-TYPE" 
                    TCGA-HZ-7922                     TCGA-HZ-7923 
  "AMP PEAK 13(19Q13.2) MUTATED" "AMP PEAK 13(19Q13.2) WILD-TYPE" 
                    TCGA-HZ-7924                     TCGA-HZ-7925 
"AMP PEAK 13(19Q13.2) WILD-TYPE" "AMP PEAK 13(19Q13.2) WILD-TYPE" 
                    TCGA-HZ-7926                     TCGA-HZ-8001 
"AMP PEAK 13(19Q13.2) WILD-TYPE"   "AMP PEAK 13(19Q13.2) MUTATED" 
                    TCGA-HZ-8002                     TCGA-HZ-8003 
"AMP PEAK 13(19Q13.2) WILD-TYPE" "AMP PEAK 13(19Q13.2) WILD-TYPE" 
                    TCGA-HZ-8005                     TCGA-HZ-8315 
"AMP PEAK 13(19Q13.2) WILD-TYPE" "AMP PEAK 13(19Q13.2) WILD-TYPE" 
                    TCGA-HZ-8317                     TCGA-HZ-8519 
"AMP PEAK 13(19Q13.2) WILD-TYPE" "AMP PEAK 13(19Q13.2) WILD-TYPE" 
                    TCGA-HZ-8636                     TCGA-HZ-8638 
"AMP PEAK 13(19Q13.2) WILD-TYPE" "AMP PEAK 13(19Q13.2) WILD-TYPE" 
                    TCGA-HZ-A49G                     TCGA-HZ-A49H 
"AMP PEAK 13(19Q13.2) WILD-TYPE" "AMP PEAK 13(19Q13.2) WILD-TYPE" 
                    TCGA-HZ-A4BH                     TCGA-HZ-A4BK 
  "AMP PEAK 13(19Q13.2) MUTATED" "AMP PEAK 13(19Q13.2) WILD-TYPE" 
                    TCGA-IB-7644                     TCGA-IB-7645 
"AMP PEAK 13(19Q13.2) WILD-TYPE" "AMP PEAK 13(19Q13.2) WILD-TYPE" 
                    TCGA-IB-7646                     TCGA-IB-7647 
"AMP PEAK 13(19Q13.2) WILD-TYPE" "AMP PEAK 13(19Q13.2) WILD-TYPE" 
                    TCGA-IB-7649                     TCGA-IB-7651 
"AMP PEAK 13(19Q13.2) WILD-TYPE" "AMP PEAK 13(19Q13.2) WILD-TYPE" 
                    TCGA-IB-7652                     TCGA-IB-7885 
"AMP PEAK 13(19Q13.2) WILD-TYPE" "AMP PEAK 13(19Q13.2) WILD-TYPE" 
                    TCGA-IB-7886                     TCGA-IB-7887 
  "AMP PEAK 13(19Q13.2) MUTATED" "AMP PEAK 13(19Q13.2) WILD-TYPE" 
                    TCGA-IB-7888                     TCGA-IB-7889 
"AMP PEAK 13(19Q13.2) WILD-TYPE" "AMP PEAK 13(19Q13.2) WILD-TYPE" 
                    TCGA-IB-7890                     TCGA-IB-7891 
"AMP PEAK 13(19Q13.2) WILD-TYPE"   "AMP PEAK 13(19Q13.2) MUTATED" 
                    TCGA-IB-7893                     TCGA-IB-7897 
  "AMP PEAK 13(19Q13.2) MUTATED" "AMP PEAK 13(19Q13.2) WILD-TYPE" 
                    TCGA-IB-8126                     TCGA-IB-8127 
"AMP PEAK 13(19Q13.2) WILD-TYPE"   "AMP PEAK 13(19Q13.2) MUTATED" 
                    TCGA-IB-A5SO                     TCGA-IB-A5SP 
"AMP PEAK 13(19Q13.2) WILD-TYPE"   "AMP PEAK 13(19Q13.2) MUTATED" 
                    TCGA-IB-A5SQ                     TCGA-IB-A5SS 
"AMP PEAK 13(19Q13.2) WILD-TYPE"   "AMP PEAK 13(19Q13.2) MUTATED" 
                    TCGA-IB-A5ST                     TCGA-IB-A6UG 
"AMP PEAK 13(19Q13.2) WILD-TYPE"   "AMP PEAK 13(19Q13.2) MUTATED" 
                    TCGA-LB-A7SX                     TCGA-OE-A75W 
  "AMP PEAK 13(19Q13.2) MUTATED" "AMP PEAK 13(19Q13.2) WILD-TYPE" 
                    TCGA-PZ-A5RE                     TCGA-Q3-A5QY 
  "AMP PEAK 13(19Q13.2) MUTATED" "AMP PEAK 13(19Q13.2) WILD-TYPE" 
                    TCGA-US-A779                     TCGA-US-A77E 
"AMP PEAK 13(19Q13.2) WILD-TYPE" "AMP PEAK 13(19Q13.2) WILD-TYPE" 
                    TCGA-US-A77J 
"AMP PEAK 13(19Q13.2) WILD-TYPE" 
                    TCGA-F2-6879                     TCGA-F2-6880 
"AMP PEAK 13(19Q13.2) WILD-TYPE" "AMP PEAK 13(19Q13.2) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"AMP PEAK 13(19Q13.2) WILD-TYPE" "AMP PEAK 13(19Q13.2) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"AMP PEAK 13(19Q13.2) WILD-TYPE" "AMP PEAK 13(19Q13.2) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"AMP PEAK 13(19Q13.2) WILD-TYPE"   "AMP PEAK 13(19Q13.2) MUTATED" 
                    TCGA-FB-A5VM                     TCGA-FB-A78T 
"AMP PEAK 13(19Q13.2) WILD-TYPE" "AMP PEAK 13(19Q13.2) WILD-TYPE" 
                    TCGA-FB-A7DR                     TCGA-FZ-5920 
  "AMP PEAK 13(19Q13.2) MUTATED"   "AMP PEAK 13(19Q13.2) MUTATED" 
                    TCGA-FZ-5922                     TCGA-FZ-5923 
"AMP PEAK 13(19Q13.2) WILD-TYPE" "AMP PEAK 13(19Q13.2) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
  "AMP PEAK 13(19Q13.2) MUTATED" "AMP PEAK 13(19Q13.2) WILD-TYPE" 
                    TCGA-H8-A6C1                     TCGA-HZ-7289 
"AMP PEAK 13(19Q13.2) WILD-TYPE" "AMP PEAK 13(19Q13.2) WILD-TYPE" 
                    TCGA-HZ-7918                     TCGA-HZ-7919 
  "AMP PEAK 13(19Q13.2) MUTATED" "AMP PEAK 13(19Q13.2) WILD-TYPE" 
                    TCGA-HZ-7922                     TCGA-HZ-7923 
  "AMP PEAK 13(19Q13.2) MUTATED" "AMP PEAK 13(19Q13.2) WILD-TYPE" 
                    TCGA-HZ-7924                     TCGA-HZ-7925 
"AMP PEAK 13(19Q13.2) WILD-TYPE" "AMP PEAK 13(19Q13.2) WILD-TYPE" 
                    TCGA-HZ-7926                     TCGA-HZ-8001 
"AMP PEAK 13(19Q13.2) WILD-TYPE"   "AMP PEAK 13(19Q13.2) MUTATED" 
                    TCGA-HZ-8002                     TCGA-HZ-8003 
"AMP PEAK 13(19Q13.2) WILD-TYPE" "AMP PEAK 13(19Q13.2) WILD-TYPE" 
                    TCGA-HZ-8005                     TCGA-HZ-8315 
"AMP PEAK 13(19Q13.2) WILD-TYPE" "AMP PEAK 13(19Q13.2) WILD-TYPE" 
                    TCGA-HZ-8317                     TCGA-HZ-8519 
"AMP PEAK 13(19Q13.2) WILD-TYPE" "AMP PEAK 13(19Q13.2) WILD-TYPE" 
                    TCGA-HZ-8636                     TCGA-HZ-8638 
"AMP PEAK 13(19Q13.2) WILD-TYPE" "AMP PEAK 13(19Q13.2) WILD-TYPE" 
                    TCGA-HZ-A49G                     TCGA-HZ-A49H 
"AMP PEAK 13(19Q13.2) WILD-TYPE" "AMP PEAK 13(19Q13.2) WILD-TYPE" 
                    TCGA-HZ-A4BH                     TCGA-HZ-A4BK 
  "AMP PEAK 13(19Q13.2) MUTATED" "AMP PEAK 13(19Q13.2) WILD-TYPE" 
                    TCGA-IB-7644                     TCGA-IB-7645 
"AMP PEAK 13(19Q13.2) WILD-TYPE" "AMP PEAK 13(19Q13.2) WILD-TYPE" 
                    TCGA-IB-7646                     TCGA-IB-7647 
"AMP PEAK 13(19Q13.2) WILD-TYPE" "AMP PEAK 13(19Q13.2) WILD-TYPE" 
                    TCGA-IB-7649                     TCGA-IB-7651 
"AMP PEAK 13(19Q13.2) WILD-TYPE" "AMP PEAK 13(19Q13.2) WILD-TYPE" 
                    TCGA-IB-7652                     TCGA-IB-7885 
"AMP PEAK 13(19Q13.2) WILD-TYPE" "AMP PEAK 13(19Q13.2) WILD-TYPE" 
                    TCGA-IB-7886                     TCGA-IB-7887 
  "AMP PEAK 13(19Q13.2) MUTATED" "AMP PEAK 13(19Q13.2) WILD-TYPE" 
                    TCGA-IB-7888                     TCGA-IB-7889 
"AMP PEAK 13(19Q13.2) WILD-TYPE" "AMP PEAK 13(19Q13.2) WILD-TYPE" 
                    TCGA-IB-7890                     TCGA-IB-7891 
"AMP PEAK 13(19Q13.2) WILD-TYPE"   "AMP PEAK 13(19Q13.2) MUTATED" 
                    TCGA-IB-7893                     TCGA-IB-7897 
  "AMP PEAK 13(19Q13.2) MUTATED" "AMP PEAK 13(19Q13.2) WILD-TYPE" 
                    TCGA-IB-8126                     TCGA-IB-8127 
"AMP PEAK 13(19Q13.2) WILD-TYPE"   "AMP PEAK 13(19Q13.2) MUTATED" 
                    TCGA-IB-A5SO                     TCGA-IB-A5SP 
"AMP PEAK 13(19Q13.2) WILD-TYPE"   "AMP PEAK 13(19Q13.2) MUTATED" 
                    TCGA-IB-A5SQ                     TCGA-IB-A5SS 
"AMP PEAK 13(19Q13.2) WILD-TYPE"   "AMP PEAK 13(19Q13.2) MUTATED" 
                    TCGA-IB-A5ST                     TCGA-IB-A6UG 
"AMP PEAK 13(19Q13.2) WILD-TYPE"   "AMP PEAK 13(19Q13.2) MUTATED" 
                    TCGA-LB-A7SX                     TCGA-OE-A75W 
  "AMP PEAK 13(19Q13.2) MUTATED" "AMP PEAK 13(19Q13.2) WILD-TYPE" 
                    TCGA-PZ-A5RE                     TCGA-Q3-A5QY 
  "AMP PEAK 13(19Q13.2) MUTATED" "AMP PEAK 13(19Q13.2) WILD-TYPE" 
                    TCGA-US-A779                     TCGA-US-A77E 
"AMP PEAK 13(19Q13.2) WILD-TYPE" "AMP PEAK 13(19Q13.2) WILD-TYPE" 
                    TCGA-US-A77J 
"AMP PEAK 13(19Q13.2) WILD-TYPE" 
[1] "hr=" "1.2"
D12V2, continuous
                                vv
clus                             STAGE IA STAGE IB STAGE IIA STAGE IIB
  AMP PEAK 13(19Q13.2) MUTATED          0        0         3        14
  AMP PEAK 13(19Q13.2) WILD-TYPE        2        4         8        36
                                vv
clus                             STAGE III STAGE IV
  AMP PEAK 13(19Q13.2) MUTATED           1        0
  AMP PEAK 13(19Q13.2) WILD-TYPE         1        3
D12V3, multiclass
                                vv
clus                             T1+T2 T3+T4
  AMP PEAK 13(19Q13.2) MUTATED       0    18
  AMP PEAK 13(19Q13.2) WILD-TYPE     7    47
D12V4, multiclass
       clus
vv      AMP PEAK 13(19Q13.2) MUTATED AMP PEAK 13(19Q13.2) WILD-TYPE
  T1+T2                            0                              7
  T3+T4                           18                             47
D12V5, binary
                                cls
clus                              0  1
  AMP PEAK 13(19Q13.2) MUTATED    3 14
  AMP PEAK 13(19Q13.2) WILD-TYPE 15 39
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 13(19Q13.2) MUTATED      3   14
  AMP PEAK 13(19Q13.2) WILD-TYPE   15   39
   clus
vv  AMP PEAK 13(19Q13.2) MUTATED AMP PEAK 13(19Q13.2) WILD-TYPE
  0                            3                             15
  1                           14                             39
                                vv
clus                             M0 M1 MX
  AMP PEAK 13(19Q13.2) MUTATED   12  0  6
  AMP PEAK 13(19Q13.2) WILD-TYPE 27  3 24
D12V6, multiclass
    clus
vv   AMP PEAK 13(19Q13.2) MUTATED AMP PEAK 13(19Q13.2) WILD-TYPE
  M0                           12                             27
  M1                            0                              3
  MX                            6                             24
D12V7, binary
                                cls
clus                              0  1
  AMP PEAK 13(19Q13.2) MUTATED    6 12
  AMP PEAK 13(19Q13.2) WILD-TYPE 30 24
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 13(19Q13.2) MUTATED      6   12
  AMP PEAK 13(19Q13.2) WILD-TYPE   30   24
        clus
vv       AMP PEAK 13(19Q13.2) MUTATED AMP PEAK 13(19Q13.2) WILD-TYPE
  FEMALE                            6                             30
  MALE                             12                             24
                                vv
clus                             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  AMP PEAK 13(19Q13.2) MUTATED                                    17
  AMP PEAK 13(19Q13.2) WILD-TYPE                                  47
                                vv
clus                             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  AMP PEAK 13(19Q13.2) MUTATED                                       0
  AMP PEAK 13(19Q13.2) WILD-TYPE                                     5
                                vv
clus                             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  AMP PEAK 13(19Q13.2) MUTATED                                                  1
  AMP PEAK 13(19Q13.2) WILD-TYPE                                                1
D12V8, multiclass
                                                  clus
vv                                                 AMP PEAK 13(19Q13.2) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                        17
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                       0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                            1
                                                  clus
vv                                                 AMP PEAK 13(19Q13.2) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                          47
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                         5
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                              1
D12V9, continuous
D12V10, continuous
                                vv
clus                             R0 R1 RX
  AMP PEAK 13(19Q13.2) MUTATED    9  7  0
  AMP PEAK 13(19Q13.2) WILD-TYPE 34 17  2
D12V11, multiclass
    clus
vv   AMP PEAK 13(19Q13.2) MUTATED AMP PEAK 13(19Q13.2) WILD-TYPE
  R0                            9                             34
  R1                            7                             17
  RX                            0                              2
D12V12, continuous

Clustering(13) Variable = AMP PEAK 14(20Q13.2) MUTATION ANALYSIS
D13V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 14(20Q13.2) MUTATED    9  7
  AMP PEAK 14(20Q13.2) WILD-TYPE 31 22
  AMP PEAK 14(20Q13.2) MUTATED AMP PEAK 14(20Q13.2) WILD-TYPE 
                            16                             53 
  AMP PEAK 14(20Q13.2) MUTATED AMP PEAK 14(20Q13.2) WILD-TYPE 
                             7                             22 
$`AMP PEAK 14(20Q13.2) MUTATED`
TCGA-F2-6879 TCGA-FB-A545 TCGA-FB-A5VM TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7922 
       10.98        12.66         2.47         7.89         0.92         0.13 
TCGA-HZ-8005 TCGA-HZ-A4BK TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7886 TCGA-IB-7890 
        3.95         1.51         4.77        21.90         4.04        19.66 
TCGA-IB-8127 TCGA-IB-A5SP TCGA-LB-A7SX TCGA-US-A77E 
       17.16         9.86         4.18        14.14 

$`AMP PEAK 14(20Q13.2) WILD-TYPE`
TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
        9.70        11.84         7.10         5.03        19.27         0.13 
TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 
        0.03         5.46         2.01        36.20        20.81        12.89 
TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7919 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        7.66        13.02         0.66         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8317 
        0.26         0.62         0.79         0.69         0.92         0.53 
TCGA-HZ-8519 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH 
        0.10         0.16         2.99         0.76         0.95         6.38 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 
       11.41        49.38        15.35        19.82        15.65        27.98 
TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 
        3.62        43.79        15.81        16.04         3.85        15.98 
TCGA-IB-8126 TCGA-IB-A5SO TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG 
        0.56        10.82         7.20        15.12         0.26         1.35 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77J 
        3.62         8.12        13.68        16.80        18.67 

  AMP PEAK 14(20Q13.2) MUTATED AMP PEAK 14(20Q13.2) WILD-TYPE 
                          0.13                           0.03 
  AMP PEAK 14(20Q13.2) MUTATED AMP PEAK 14(20Q13.2) WILD-TYPE 
                         21.90                          49.38 
  AMP PEAK 14(20Q13.2) MUTATED AMP PEAK 14(20Q13.2) WILD-TYPE 
                          6.33                           7.20 
[1] "0.1 - 21.9 (6.3)" "0.0 - 49.4 (7.2)"
                    TCGA-F2-6879                     TCGA-F2-6880 
  "AMP PEAK 14(20Q13.2) MUTATED" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"AMP PEAK 14(20Q13.2) WILD-TYPE"   "AMP PEAK 14(20Q13.2) MUTATED" 
                    TCGA-FB-A5VM                     TCGA-FB-A78T 
  "AMP PEAK 14(20Q13.2) MUTATED" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-FB-A7DR                     TCGA-FZ-5920 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-FZ-5922                     TCGA-FZ-5923 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-H8-A6C1                     TCGA-HZ-7289 
"AMP PEAK 14(20Q13.2) WILD-TYPE"   "AMP PEAK 14(20Q13.2) MUTATED" 
                    TCGA-HZ-7918                     TCGA-HZ-7919 
  "AMP PEAK 14(20Q13.2) MUTATED" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-HZ-7922                     TCGA-HZ-7923 
  "AMP PEAK 14(20Q13.2) MUTATED" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-HZ-7924                     TCGA-HZ-7925 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-HZ-7926                     TCGA-HZ-8001 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-HZ-8002                     TCGA-HZ-8003 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-HZ-8005                     TCGA-HZ-8315 
  "AMP PEAK 14(20Q13.2) MUTATED" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-HZ-8317                     TCGA-HZ-8519 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-HZ-8636                     TCGA-HZ-8638 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-HZ-A49G                     TCGA-HZ-A49H 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-HZ-A4BH                     TCGA-HZ-A4BK 
"AMP PEAK 14(20Q13.2) WILD-TYPE"   "AMP PEAK 14(20Q13.2) MUTATED" 
                    TCGA-IB-7644                     TCGA-IB-7645 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-IB-7646                     TCGA-IB-7647 
  "AMP PEAK 14(20Q13.2) MUTATED"   "AMP PEAK 14(20Q13.2) MUTATED" 
                    TCGA-IB-7649                     TCGA-IB-7651 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-IB-7652                     TCGA-IB-7885 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-IB-7886                     TCGA-IB-7887 
  "AMP PEAK 14(20Q13.2) MUTATED" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-IB-7888                     TCGA-IB-7889 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-IB-7890                     TCGA-IB-7891 
  "AMP PEAK 14(20Q13.2) MUTATED" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-IB-7893                     TCGA-IB-7897 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-IB-8126                     TCGA-IB-8127 
"AMP PEAK 14(20Q13.2) WILD-TYPE"   "AMP PEAK 14(20Q13.2) MUTATED" 
                    TCGA-IB-A5SO                     TCGA-IB-A5SP 
"AMP PEAK 14(20Q13.2) WILD-TYPE"   "AMP PEAK 14(20Q13.2) MUTATED" 
                    TCGA-IB-A5SQ                     TCGA-IB-A5SS 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-IB-A5ST                     TCGA-IB-A6UG 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-LB-A7SX                     TCGA-OE-A75W 
  "AMP PEAK 14(20Q13.2) MUTATED" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-PZ-A5RE                     TCGA-Q3-A5QY 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-US-A779                     TCGA-US-A77E 
"AMP PEAK 14(20Q13.2) WILD-TYPE"   "AMP PEAK 14(20Q13.2) MUTATED" 
                    TCGA-US-A77J 
"AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-F2-6879                     TCGA-F2-6880 
  "AMP PEAK 14(20Q13.2) MUTATED" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"AMP PEAK 14(20Q13.2) WILD-TYPE"   "AMP PEAK 14(20Q13.2) MUTATED" 
                    TCGA-FB-A5VM                     TCGA-FB-A78T 
  "AMP PEAK 14(20Q13.2) MUTATED" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-FB-A7DR                     TCGA-FZ-5920 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-FZ-5922                     TCGA-FZ-5923 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-H8-A6C1                     TCGA-HZ-7289 
"AMP PEAK 14(20Q13.2) WILD-TYPE"   "AMP PEAK 14(20Q13.2) MUTATED" 
                    TCGA-HZ-7918                     TCGA-HZ-7919 
  "AMP PEAK 14(20Q13.2) MUTATED" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-HZ-7922                     TCGA-HZ-7923 
  "AMP PEAK 14(20Q13.2) MUTATED" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-HZ-7924                     TCGA-HZ-7925 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-HZ-7926                     TCGA-HZ-8001 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-HZ-8002                     TCGA-HZ-8003 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-HZ-8005                     TCGA-HZ-8315 
  "AMP PEAK 14(20Q13.2) MUTATED" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-HZ-8317                     TCGA-HZ-8519 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-HZ-8636                     TCGA-HZ-8638 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-HZ-A49G                     TCGA-HZ-A49H 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-HZ-A4BH                     TCGA-HZ-A4BK 
"AMP PEAK 14(20Q13.2) WILD-TYPE"   "AMP PEAK 14(20Q13.2) MUTATED" 
                    TCGA-IB-7644                     TCGA-IB-7645 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-IB-7646                     TCGA-IB-7647 
  "AMP PEAK 14(20Q13.2) MUTATED"   "AMP PEAK 14(20Q13.2) MUTATED" 
                    TCGA-IB-7649                     TCGA-IB-7651 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-IB-7652                     TCGA-IB-7885 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-IB-7886                     TCGA-IB-7887 
  "AMP PEAK 14(20Q13.2) MUTATED" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-IB-7888                     TCGA-IB-7889 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-IB-7890                     TCGA-IB-7891 
  "AMP PEAK 14(20Q13.2) MUTATED" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-IB-7893                     TCGA-IB-7897 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-IB-8126                     TCGA-IB-8127 
"AMP PEAK 14(20Q13.2) WILD-TYPE"   "AMP PEAK 14(20Q13.2) MUTATED" 
                    TCGA-IB-A5SO                     TCGA-IB-A5SP 
"AMP PEAK 14(20Q13.2) WILD-TYPE"   "AMP PEAK 14(20Q13.2) MUTATED" 
                    TCGA-IB-A5SQ                     TCGA-IB-A5SS 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-IB-A5ST                     TCGA-IB-A6UG 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-LB-A7SX                     TCGA-OE-A75W 
  "AMP PEAK 14(20Q13.2) MUTATED" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-PZ-A5RE                     TCGA-Q3-A5QY 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-US-A779                     TCGA-US-A77E 
"AMP PEAK 14(20Q13.2) WILD-TYPE"   "AMP PEAK 14(20Q13.2) MUTATED" 
                    TCGA-US-A77J 
"AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-F2-6879                     TCGA-F2-6880 
  "AMP PEAK 14(20Q13.2) MUTATED" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"AMP PEAK 14(20Q13.2) WILD-TYPE"   "AMP PEAK 14(20Q13.2) MUTATED" 
                    TCGA-FB-A5VM                     TCGA-FB-A78T 
  "AMP PEAK 14(20Q13.2) MUTATED" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-FB-A7DR                     TCGA-FZ-5920 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-FZ-5922                     TCGA-FZ-5923 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-H8-A6C1                     TCGA-HZ-7289 
"AMP PEAK 14(20Q13.2) WILD-TYPE"   "AMP PEAK 14(20Q13.2) MUTATED" 
                    TCGA-HZ-7918                     TCGA-HZ-7919 
  "AMP PEAK 14(20Q13.2) MUTATED" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-HZ-7922                     TCGA-HZ-7923 
  "AMP PEAK 14(20Q13.2) MUTATED" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-HZ-7924                     TCGA-HZ-7925 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-HZ-7926                     TCGA-HZ-8001 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-HZ-8002                     TCGA-HZ-8003 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-HZ-8005                     TCGA-HZ-8315 
  "AMP PEAK 14(20Q13.2) MUTATED" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-HZ-8317                     TCGA-HZ-8519 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-HZ-8636                     TCGA-HZ-8638 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-HZ-A49G                     TCGA-HZ-A49H 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-HZ-A4BH                     TCGA-HZ-A4BK 
"AMP PEAK 14(20Q13.2) WILD-TYPE"   "AMP PEAK 14(20Q13.2) MUTATED" 
                    TCGA-IB-7644                     TCGA-IB-7645 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-IB-7646                     TCGA-IB-7647 
  "AMP PEAK 14(20Q13.2) MUTATED"   "AMP PEAK 14(20Q13.2) MUTATED" 
                    TCGA-IB-7649                     TCGA-IB-7651 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-IB-7652                     TCGA-IB-7885 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-IB-7886                     TCGA-IB-7887 
  "AMP PEAK 14(20Q13.2) MUTATED" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-IB-7888                     TCGA-IB-7889 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-IB-7890                     TCGA-IB-7891 
  "AMP PEAK 14(20Q13.2) MUTATED" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-IB-7893                     TCGA-IB-7897 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-IB-8126                     TCGA-IB-8127 
"AMP PEAK 14(20Q13.2) WILD-TYPE"   "AMP PEAK 14(20Q13.2) MUTATED" 
                    TCGA-IB-A5SO                     TCGA-IB-A5SP 
"AMP PEAK 14(20Q13.2) WILD-TYPE"   "AMP PEAK 14(20Q13.2) MUTATED" 
                    TCGA-IB-A5SQ                     TCGA-IB-A5SS 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-IB-A5ST                     TCGA-IB-A6UG 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-LB-A7SX                     TCGA-OE-A75W 
  "AMP PEAK 14(20Q13.2) MUTATED" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-PZ-A5RE                     TCGA-Q3-A5QY 
"AMP PEAK 14(20Q13.2) WILD-TYPE" "AMP PEAK 14(20Q13.2) WILD-TYPE" 
                    TCGA-US-A779                     TCGA-US-A77E 
"AMP PEAK 14(20Q13.2) WILD-TYPE"   "AMP PEAK 14(20Q13.2) MUTATED" 
                    TCGA-US-A77J 
"AMP PEAK 14(20Q13.2) WILD-TYPE" 
[1] "hr=" "1.3"
D13V2, continuous
                                vv
clus                             STAGE IA STAGE IB STAGE IIA STAGE IIB
  AMP PEAK 14(20Q13.2) MUTATED          0        2         1        14
  AMP PEAK 14(20Q13.2) WILD-TYPE        2        2        10        36
                                vv
clus                             STAGE III STAGE IV
  AMP PEAK 14(20Q13.2) MUTATED           0        0
  AMP PEAK 14(20Q13.2) WILD-TYPE         2        3
D13V3, multiclass
                                vv
clus                             T1+T2 T3+T4
  AMP PEAK 14(20Q13.2) MUTATED       2    15
  AMP PEAK 14(20Q13.2) WILD-TYPE     5    50
D13V4, multiclass
       clus
vv      AMP PEAK 14(20Q13.2) MUTATED AMP PEAK 14(20Q13.2) WILD-TYPE
  T1+T2                            2                              5
  T3+T4                           15                             50
D13V5, binary
                                cls
clus                              0  1
  AMP PEAK 14(20Q13.2) MUTATED    3 14
  AMP PEAK 14(20Q13.2) WILD-TYPE 15 39
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 14(20Q13.2) MUTATED      3   14
  AMP PEAK 14(20Q13.2) WILD-TYPE   15   39
   clus
vv  AMP PEAK 14(20Q13.2) MUTATED AMP PEAK 14(20Q13.2) WILD-TYPE
  0                            3                             15
  1                           14                             39
                                vv
clus                             M0 M1 MX
  AMP PEAK 14(20Q13.2) MUTATED   10  0  7
  AMP PEAK 14(20Q13.2) WILD-TYPE 29  3 23
D13V6, multiclass
    clus
vv   AMP PEAK 14(20Q13.2) MUTATED AMP PEAK 14(20Q13.2) WILD-TYPE
  M0                           10                             29
  M1                            0                              3
  MX                            7                             23
D13V7, binary
                                cls
clus                              0  1
  AMP PEAK 14(20Q13.2) MUTATED    5 12
  AMP PEAK 14(20Q13.2) WILD-TYPE 31 24
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 14(20Q13.2) MUTATED      5   12
  AMP PEAK 14(20Q13.2) WILD-TYPE   31   24
        clus
vv       AMP PEAK 14(20Q13.2) MUTATED AMP PEAK 14(20Q13.2) WILD-TYPE
  FEMALE                            5                             31
  MALE                             12                             24
                                vv
clus                             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  AMP PEAK 14(20Q13.2) MUTATED                                    14
  AMP PEAK 14(20Q13.2) WILD-TYPE                                  50
                                vv
clus                             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  AMP PEAK 14(20Q13.2) MUTATED                                       2
  AMP PEAK 14(20Q13.2) WILD-TYPE                                     3
                                vv
clus                             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  AMP PEAK 14(20Q13.2) MUTATED                                                  0
  AMP PEAK 14(20Q13.2) WILD-TYPE                                                2
D13V8, multiclass
                                                  clus
vv                                                 AMP PEAK 14(20Q13.2) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                        14
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                       2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                            0
                                                  clus
vv                                                 AMP PEAK 14(20Q13.2) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                          50
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                         3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                              2
D13V9, continuous
D13V10, continuous
                                vv
clus                             R0 R1 RX
  AMP PEAK 14(20Q13.2) MUTATED    6  9  1
  AMP PEAK 14(20Q13.2) WILD-TYPE 37 15  1
D13V11, multiclass
    clus
vv   AMP PEAK 14(20Q13.2) MUTATED AMP PEAK 14(20Q13.2) WILD-TYPE
  R0                            6                             37
  R1                            9                             15
  RX                            1                              1
D13V12, continuous

Clustering(14) Variable = AMP PEAK 15(XP22.11) MUTATION ANALYSIS
D14V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 15(XP22.11) MUTATED    3  1
  AMP PEAK 15(XP22.11) WILD-TYPE 37 28
  AMP PEAK 15(XP22.11) MUTATED AMP PEAK 15(XP22.11) WILD-TYPE 
                             4                             65 
  AMP PEAK 15(XP22.11) MUTATED AMP PEAK 15(XP22.11) WILD-TYPE 
                             1                             28 
$`AMP PEAK 15(XP22.11) MUTATED`
TCGA-F2-6880 TCGA-F2-7276 TCGA-HZ-7925 TCGA-LB-A7SX 
        9.70         7.10        11.87         4.18 

$`AMP PEAK 15(XP22.11) WILD-TYPE`
TCGA-F2-6879 TCGA-F2-7273 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 TCGA-FB-A545 
       10.98        11.84         5.03        19.27         0.13        12.66 
TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 
        2.47         0.03         5.46         2.01        36.20        20.81 
TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 
       12.89         7.66        13.02         7.89         0.92         0.66 
TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 
        0.13         0.26        12.13         0.26         0.62         0.79 
TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 
        0.69         3.95         0.92         0.53         0.10         0.16 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        2.99         0.76         0.95         6.38         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 
       49.38         4.77        21.90        15.35        19.82        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 
       27.98         4.04         3.62        43.79        15.81        19.66 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO 
       16.04         3.85        15.98         0.56        17.16        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-OE-A75W 
        9.86         7.20        15.12         0.26         1.35         3.62 
TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        8.12        13.68        16.80        14.14        18.67 

  AMP PEAK 15(XP22.11) MUTATED AMP PEAK 15(XP22.11) WILD-TYPE 
                          4.18                           0.03 
  AMP PEAK 15(XP22.11) MUTATED AMP PEAK 15(XP22.11) WILD-TYPE 
                         11.87                          49.38 
  AMP PEAK 15(XP22.11) MUTATED AMP PEAK 15(XP22.11) WILD-TYPE 
                           8.4                            7.2 
[1] "4.2 - 11.9 (8.4)" "0.0 - 49.4 (7.2)"
                    TCGA-F2-6879                     TCGA-F2-6880 
"AMP PEAK 15(XP22.11) WILD-TYPE"   "AMP PEAK 15(XP22.11) MUTATED" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"AMP PEAK 15(XP22.11) WILD-TYPE"   "AMP PEAK 15(XP22.11) MUTATED" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-FB-A5VM                     TCGA-FB-A78T 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-FB-A7DR                     TCGA-FZ-5920 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-FZ-5922                     TCGA-FZ-5923 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-H8-A6C1                     TCGA-HZ-7289 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-HZ-7918                     TCGA-HZ-7919 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-HZ-7922                     TCGA-HZ-7923 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-HZ-7924                     TCGA-HZ-7925 
"AMP PEAK 15(XP22.11) WILD-TYPE"   "AMP PEAK 15(XP22.11) MUTATED" 
                    TCGA-HZ-7926                     TCGA-HZ-8001 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-HZ-8002                     TCGA-HZ-8003 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-HZ-8005                     TCGA-HZ-8315 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-HZ-8317                     TCGA-HZ-8519 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-HZ-8636                     TCGA-HZ-8638 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-HZ-A49G                     TCGA-HZ-A49H 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-HZ-A4BH                     TCGA-HZ-A4BK 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-IB-7644                     TCGA-IB-7645 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-IB-7646                     TCGA-IB-7647 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-IB-7649                     TCGA-IB-7651 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-IB-7652                     TCGA-IB-7885 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-IB-7886                     TCGA-IB-7887 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-IB-7888                     TCGA-IB-7889 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-IB-7890                     TCGA-IB-7891 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-IB-7893                     TCGA-IB-7897 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-IB-8126                     TCGA-IB-8127 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-IB-A5SO                     TCGA-IB-A5SP 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-IB-A5SQ                     TCGA-IB-A5SS 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-IB-A5ST                     TCGA-IB-A6UG 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-LB-A7SX                     TCGA-OE-A75W 
  "AMP PEAK 15(XP22.11) MUTATED" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-PZ-A5RE                     TCGA-Q3-A5QY 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-US-A779                     TCGA-US-A77E 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-US-A77J 
"AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-F2-6879                     TCGA-F2-6880 
"AMP PEAK 15(XP22.11) WILD-TYPE"   "AMP PEAK 15(XP22.11) MUTATED" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"AMP PEAK 15(XP22.11) WILD-TYPE"   "AMP PEAK 15(XP22.11) MUTATED" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-FB-A5VM                     TCGA-FB-A78T 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-FB-A7DR                     TCGA-FZ-5920 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-FZ-5922                     TCGA-FZ-5923 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-H8-A6C1                     TCGA-HZ-7289 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-HZ-7918                     TCGA-HZ-7919 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-HZ-7922                     TCGA-HZ-7923 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-HZ-7924                     TCGA-HZ-7925 
"AMP PEAK 15(XP22.11) WILD-TYPE"   "AMP PEAK 15(XP22.11) MUTATED" 
                    TCGA-HZ-7926                     TCGA-HZ-8001 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-HZ-8002                     TCGA-HZ-8003 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-HZ-8005                     TCGA-HZ-8315 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-HZ-8317                     TCGA-HZ-8519 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-HZ-8636                     TCGA-HZ-8638 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-HZ-A49G                     TCGA-HZ-A49H 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-HZ-A4BH                     TCGA-HZ-A4BK 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-IB-7644                     TCGA-IB-7645 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-IB-7646                     TCGA-IB-7647 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-IB-7649                     TCGA-IB-7651 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-IB-7652                     TCGA-IB-7885 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-IB-7886                     TCGA-IB-7887 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-IB-7888                     TCGA-IB-7889 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-IB-7890                     TCGA-IB-7891 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-IB-7893                     TCGA-IB-7897 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-IB-8126                     TCGA-IB-8127 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-IB-A5SO                     TCGA-IB-A5SP 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-IB-A5SQ                     TCGA-IB-A5SS 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-IB-A5ST                     TCGA-IB-A6UG 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-LB-A7SX                     TCGA-OE-A75W 
  "AMP PEAK 15(XP22.11) MUTATED" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-PZ-A5RE                     TCGA-Q3-A5QY 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-US-A779                     TCGA-US-A77E 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-US-A77J 
"AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-F2-6879                     TCGA-F2-6880 
"AMP PEAK 15(XP22.11) WILD-TYPE"   "AMP PEAK 15(XP22.11) MUTATED" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"AMP PEAK 15(XP22.11) WILD-TYPE"   "AMP PEAK 15(XP22.11) MUTATED" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-FB-A5VM                     TCGA-FB-A78T 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-FB-A7DR                     TCGA-FZ-5920 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-FZ-5922                     TCGA-FZ-5923 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-H8-A6C1                     TCGA-HZ-7289 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-HZ-7918                     TCGA-HZ-7919 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-HZ-7922                     TCGA-HZ-7923 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-HZ-7924                     TCGA-HZ-7925 
"AMP PEAK 15(XP22.11) WILD-TYPE"   "AMP PEAK 15(XP22.11) MUTATED" 
                    TCGA-HZ-7926                     TCGA-HZ-8001 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-HZ-8002                     TCGA-HZ-8003 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-HZ-8005                     TCGA-HZ-8315 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-HZ-8317                     TCGA-HZ-8519 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-HZ-8636                     TCGA-HZ-8638 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-HZ-A49G                     TCGA-HZ-A49H 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-HZ-A4BH                     TCGA-HZ-A4BK 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-IB-7644                     TCGA-IB-7645 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-IB-7646                     TCGA-IB-7647 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-IB-7649                     TCGA-IB-7651 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-IB-7652                     TCGA-IB-7885 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-IB-7886                     TCGA-IB-7887 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-IB-7888                     TCGA-IB-7889 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-IB-7890                     TCGA-IB-7891 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-IB-7893                     TCGA-IB-7897 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-IB-8126                     TCGA-IB-8127 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-IB-A5SO                     TCGA-IB-A5SP 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-IB-A5SQ                     TCGA-IB-A5SS 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-IB-A5ST                     TCGA-IB-A6UG 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-LB-A7SX                     TCGA-OE-A75W 
  "AMP PEAK 15(XP22.11) MUTATED" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-PZ-A5RE                     TCGA-Q3-A5QY 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-US-A779                     TCGA-US-A77E 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-US-A77J 
"AMP PEAK 15(XP22.11) WILD-TYPE" 
[1] "hr=" "1.1"
D14V2, continuous
                                vv
clus                             STAGE IA STAGE IB STAGE IIA STAGE IIB
  AMP PEAK 15(XP22.11) MUTATED          0        0         0         4
  AMP PEAK 15(XP22.11) WILD-TYPE        2        4        11        46
                                vv
clus                             STAGE III STAGE IV
  AMP PEAK 15(XP22.11) MUTATED           0        0
  AMP PEAK 15(XP22.11) WILD-TYPE         2        3
D14V3, multiclass
                                vv
clus                             T1+T2 T3+T4
  AMP PEAK 15(XP22.11) MUTATED       0     4
  AMP PEAK 15(XP22.11) WILD-TYPE     7    61
D14V4, multiclass
       clus
vv      AMP PEAK 15(XP22.11) MUTATED AMP PEAK 15(XP22.11) WILD-TYPE
  T1+T2                            0                              7
  T3+T4                            4                             61
D14V5, binary
                                cls
clus                              0  1
  AMP PEAK 15(XP22.11) MUTATED    0  4
  AMP PEAK 15(XP22.11) WILD-TYPE 18 49
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 15(XP22.11) MUTATED      0    4
  AMP PEAK 15(XP22.11) WILD-TYPE   18   49
   clus
vv  AMP PEAK 15(XP22.11) MUTATED AMP PEAK 15(XP22.11) WILD-TYPE
  0                            0                             18
  1                            4                             49
                                vv
clus                             M0 M1 MX
  AMP PEAK 15(XP22.11) MUTATED    2  0  2
  AMP PEAK 15(XP22.11) WILD-TYPE 37  3 28
D14V6, multiclass
    clus
vv   AMP PEAK 15(XP22.11) MUTATED AMP PEAK 15(XP22.11) WILD-TYPE
  M0                            2                             37
  M1                            0                              3
  MX                            2                             28
D14V7, binary
                                cls
clus                              0  1
  AMP PEAK 15(XP22.11) MUTATED    1  3
  AMP PEAK 15(XP22.11) WILD-TYPE 35 33
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 15(XP22.11) MUTATED      1    3
  AMP PEAK 15(XP22.11) WILD-TYPE   35   33
        clus
vv       AMP PEAK 15(XP22.11) MUTATED AMP PEAK 15(XP22.11) WILD-TYPE
  FEMALE                            1                             35
  MALE                              3                             33
                                vv
clus                             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  AMP PEAK 15(XP22.11) MUTATED                                     4
  AMP PEAK 15(XP22.11) WILD-TYPE                                  60
                                vv
clus                             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  AMP PEAK 15(XP22.11) MUTATED                                       0
  AMP PEAK 15(XP22.11) WILD-TYPE                                     5
                                vv
clus                             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  AMP PEAK 15(XP22.11) MUTATED                                                  0
  AMP PEAK 15(XP22.11) WILD-TYPE                                                2
D14V8, multiclass
                                                  clus
vv                                                 AMP PEAK 15(XP22.11) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                         4
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                       0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                            0
                                                  clus
vv                                                 AMP PEAK 15(XP22.11) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                          60
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                         5
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                              2
D14V9, continuous
[1] "Remove cluster labels:"       "AMP PEAK 15(XP22.11) MUTATED"
clus
  AMP PEAK 15(XP22.11) MUTATED AMP PEAK 15(XP22.11) WILD-TYPE 
                             2                             19 
                    TCGA-FB-A4P5                     TCGA-FB-A5VM 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-FB-A78T                     TCGA-FB-A7DR 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-H8-A6C1                     TCGA-IB-7644 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-IB-7649                     TCGA-IB-7651 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-IB-7885                     TCGA-IB-7886 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-IB-7887                     TCGA-IB-7891 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-IB-8126                     TCGA-IB-8127 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-IB-A5SS                     TCGA-IB-A6UG 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-OE-A75W 
"AMP PEAK 15(XP22.11) WILD-TYPE" 
D14V10, continuous
[1] "Remove cluster labels:"       "AMP PEAK 15(XP22.11) MUTATED"
clus
  AMP PEAK 15(XP22.11) MUTATED AMP PEAK 15(XP22.11) WILD-TYPE 
                             1                             17 
                    TCGA-FB-A4P5                     TCGA-FB-A5VM 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-FB-A78T                     TCGA-FB-A7DR 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-H8-A6C1 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-IB-7644                     TCGA-IB-7649 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7885 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-IB-7886                     TCGA-IB-7891 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-IB-8126                     TCGA-IB-8127 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-IB-A5SS                     TCGA-IB-A6UG 
"AMP PEAK 15(XP22.11) WILD-TYPE" "AMP PEAK 15(XP22.11) WILD-TYPE" 
                    TCGA-OE-A75W 
"AMP PEAK 15(XP22.11) WILD-TYPE" 
                                vv
clus                             R0 R1 RX
  AMP PEAK 15(XP22.11) MUTATED    3  1  0
  AMP PEAK 15(XP22.11) WILD-TYPE 40 23  2
D14V11, multiclass
    clus
vv   AMP PEAK 15(XP22.11) MUTATED AMP PEAK 15(XP22.11) WILD-TYPE
  R0                            3                             40
  R1                            1                             23
  RX                            0                              2
D14V12, continuous

Clustering(15) Variable = AMP PEAK 16(XQ27.1) MUTATION ANALYSIS
D15V1, survival
                               sevent
clus2                            0  1
  AMP PEAK 16(XQ27.1) MUTATED    5  2
  AMP PEAK 16(XQ27.1) WILD-TYPE 35 27
  AMP PEAK 16(XQ27.1) MUTATED AMP PEAK 16(XQ27.1) WILD-TYPE 
                            7                            62 
  AMP PEAK 16(XQ27.1) MUTATED AMP PEAK 16(XQ27.1) WILD-TYPE 
                            2                            27 
$`AMP PEAK 16(XQ27.1) MUTATED`
TCGA-F2-6879 TCGA-FB-A78T TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-8001 TCGA-IB-7652 
       10.98         0.03         7.89         0.92         0.62        15.65 
TCGA-IB-A6UG 
        1.35 

$`AMP PEAK 16(XQ27.1) WILD-TYPE`
TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
        9.70        11.84         7.10         5.03        19.27         0.13 
TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 
       12.66         2.47         5.46         2.01        36.20        20.81 
TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 
       12.89         7.66        13.02         0.66         0.13         0.26 
TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 
       12.13        11.87         0.26         0.79         0.69         3.95 
TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G 
        0.92         0.53         0.10         0.16         2.99         0.76 
TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 
        0.95         6.38         1.51        11.41        49.38         4.77 
TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 
       21.90        15.35        19.82        27.98         4.04         3.62 
TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 
       43.79        15.81        19.66        16.04         3.85        15.98 
TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS 
        0.56        17.16        10.82         9.86         7.20        15.12 
TCGA-IB-A5ST TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 
        0.26         4.18         3.62         8.12        13.68        16.80 
TCGA-US-A77E TCGA-US-A77J 
       14.14        18.67 

  AMP PEAK 16(XQ27.1) MUTATED AMP PEAK 16(XQ27.1) WILD-TYPE 
                         0.03                          0.10 
  AMP PEAK 16(XQ27.1) MUTATED AMP PEAK 16(XQ27.1) WILD-TYPE 
                        15.65                         49.38 
  AMP PEAK 16(XQ27.1) MUTATED AMP PEAK 16(XQ27.1) WILD-TYPE 
                         1.35                          7.43 
[1] "0.0 - 15.7 (1.4)" "0.1 - 49.4 (7.4)"
                   TCGA-F2-6879                    TCGA-F2-6880 
  "AMP PEAK 16(XQ27.1) MUTATED" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-FB-A5VM                    TCGA-FB-A78T 
"AMP PEAK 16(XQ27.1) WILD-TYPE"   "AMP PEAK 16(XQ27.1) MUTATED" 
                   TCGA-FB-A7DR                    TCGA-FZ-5920 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-FZ-5922                    TCGA-FZ-5923 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-H8-A6C1                    TCGA-HZ-7289 
"AMP PEAK 16(XQ27.1) WILD-TYPE"   "AMP PEAK 16(XQ27.1) MUTATED" 
                   TCGA-HZ-7918                    TCGA-HZ-7919 
  "AMP PEAK 16(XQ27.1) MUTATED" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-7922                    TCGA-HZ-7923 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-7924                    TCGA-HZ-7925 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-7926                    TCGA-HZ-8001 
"AMP PEAK 16(XQ27.1) WILD-TYPE"   "AMP PEAK 16(XQ27.1) MUTATED" 
                   TCGA-HZ-8002                    TCGA-HZ-8003 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-8005                    TCGA-HZ-8315 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-8317                    TCGA-HZ-8519 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-8636                    TCGA-HZ-8638 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-A49G                    TCGA-HZ-A49H 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-A4BH                    TCGA-HZ-A4BK 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-IB-7644                    TCGA-IB-7645 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-IB-7646                    TCGA-IB-7647 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-IB-7649                    TCGA-IB-7651 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-IB-7652                    TCGA-IB-7885 
  "AMP PEAK 16(XQ27.1) MUTATED" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-IB-7886                    TCGA-IB-7887 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-IB-7888                    TCGA-IB-7889 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-IB-7890                    TCGA-IB-7891 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-IB-7893                    TCGA-IB-7897 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-IB-8126                    TCGA-IB-8127 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-IB-A5SO                    TCGA-IB-A5SP 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-IB-A5SQ                    TCGA-IB-A5SS 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-IB-A5ST                    TCGA-IB-A6UG 
"AMP PEAK 16(XQ27.1) WILD-TYPE"   "AMP PEAK 16(XQ27.1) MUTATED" 
                   TCGA-LB-A7SX                    TCGA-OE-A75W 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-PZ-A5RE                    TCGA-Q3-A5QY 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-US-A779                    TCGA-US-A77E 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-US-A77J 
"AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-F2-6879                    TCGA-F2-6880 
  "AMP PEAK 16(XQ27.1) MUTATED" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-FB-A5VM                    TCGA-FB-A78T 
"AMP PEAK 16(XQ27.1) WILD-TYPE"   "AMP PEAK 16(XQ27.1) MUTATED" 
                   TCGA-FB-A7DR                    TCGA-FZ-5920 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-FZ-5922                    TCGA-FZ-5923 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-H8-A6C1                    TCGA-HZ-7289 
"AMP PEAK 16(XQ27.1) WILD-TYPE"   "AMP PEAK 16(XQ27.1) MUTATED" 
                   TCGA-HZ-7918                    TCGA-HZ-7919 
  "AMP PEAK 16(XQ27.1) MUTATED" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-7922                    TCGA-HZ-7923 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-7924                    TCGA-HZ-7925 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-7926                    TCGA-HZ-8001 
"AMP PEAK 16(XQ27.1) WILD-TYPE"   "AMP PEAK 16(XQ27.1) MUTATED" 
                   TCGA-HZ-8002                    TCGA-HZ-8003 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-8005                    TCGA-HZ-8315 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-8317                    TCGA-HZ-8519 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-8636                    TCGA-HZ-8638 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-A49G                    TCGA-HZ-A49H 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-A4BH                    TCGA-HZ-A4BK 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-IB-7644                    TCGA-IB-7645 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-IB-7646                    TCGA-IB-7647 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-IB-7649                    TCGA-IB-7651 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-IB-7652                    TCGA-IB-7885 
  "AMP PEAK 16(XQ27.1) MUTATED" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-IB-7886                    TCGA-IB-7887 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-IB-7888                    TCGA-IB-7889 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-IB-7890                    TCGA-IB-7891 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-IB-7893                    TCGA-IB-7897 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-IB-8126                    TCGA-IB-8127 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-IB-A5SO                    TCGA-IB-A5SP 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-IB-A5SQ                    TCGA-IB-A5SS 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-IB-A5ST                    TCGA-IB-A6UG 
"AMP PEAK 16(XQ27.1) WILD-TYPE"   "AMP PEAK 16(XQ27.1) MUTATED" 
                   TCGA-LB-A7SX                    TCGA-OE-A75W 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-PZ-A5RE                    TCGA-Q3-A5QY 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-US-A779                    TCGA-US-A77E 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-US-A77J 
"AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-F2-6879                    TCGA-F2-6880 
  "AMP PEAK 16(XQ27.1) MUTATED" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-FB-A5VM                    TCGA-FB-A78T 
"AMP PEAK 16(XQ27.1) WILD-TYPE"   "AMP PEAK 16(XQ27.1) MUTATED" 
                   TCGA-FB-A7DR                    TCGA-FZ-5920 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-FZ-5922                    TCGA-FZ-5923 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-H8-A6C1                    TCGA-HZ-7289 
"AMP PEAK 16(XQ27.1) WILD-TYPE"   "AMP PEAK 16(XQ27.1) MUTATED" 
                   TCGA-HZ-7918                    TCGA-HZ-7919 
  "AMP PEAK 16(XQ27.1) MUTATED" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-7922                    TCGA-HZ-7923 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-7924                    TCGA-HZ-7925 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-7926                    TCGA-HZ-8001 
"AMP PEAK 16(XQ27.1) WILD-TYPE"   "AMP PEAK 16(XQ27.1) MUTATED" 
                   TCGA-HZ-8002                    TCGA-HZ-8003 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-8005                    TCGA-HZ-8315 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-8317                    TCGA-HZ-8519 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-8636                    TCGA-HZ-8638 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-A49G                    TCGA-HZ-A49H 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-A4BH                    TCGA-HZ-A4BK 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-IB-7644                    TCGA-IB-7645 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-IB-7646                    TCGA-IB-7647 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-IB-7649                    TCGA-IB-7651 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-IB-7652                    TCGA-IB-7885 
  "AMP PEAK 16(XQ27.1) MUTATED" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-IB-7886                    TCGA-IB-7887 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-IB-7888                    TCGA-IB-7889 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-IB-7890                    TCGA-IB-7891 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-IB-7893                    TCGA-IB-7897 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-IB-8126                    TCGA-IB-8127 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-IB-A5SO                    TCGA-IB-A5SP 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-IB-A5SQ                    TCGA-IB-A5SS 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-IB-A5ST                    TCGA-IB-A6UG 
"AMP PEAK 16(XQ27.1) WILD-TYPE"   "AMP PEAK 16(XQ27.1) MUTATED" 
                   TCGA-LB-A7SX                    TCGA-OE-A75W 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-PZ-A5RE                    TCGA-Q3-A5QY 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-US-A779                    TCGA-US-A77E 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-US-A77J 
"AMP PEAK 16(XQ27.1) WILD-TYPE" 
[1] "hr=" "1.7"
D15V2, continuous
                               vv
clus                            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III
  AMP PEAK 16(XQ27.1) MUTATED          0        0         0         7         1
  AMP PEAK 16(XQ27.1) WILD-TYPE        2        4        11        43         1
                               vv
clus                            STAGE IV
  AMP PEAK 16(XQ27.1) MUTATED          0
  AMP PEAK 16(XQ27.1) WILD-TYPE        3
D15V3, multiclass
                               vv
clus                            T1+T2 T3+T4
  AMP PEAK 16(XQ27.1) MUTATED       0     8
  AMP PEAK 16(XQ27.1) WILD-TYPE     7    57
D15V4, multiclass
       clus
vv      AMP PEAK 16(XQ27.1) MUTATED AMP PEAK 16(XQ27.1) WILD-TYPE
  T1+T2                           0                             7
  T3+T4                           8                            57
D15V5, binary
                               cls
clus                             0  1
  AMP PEAK 16(XQ27.1) MUTATED    1  7
  AMP PEAK 16(XQ27.1) WILD-TYPE 17 46
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 16(XQ27.1) MUTATED      1    7
  AMP PEAK 16(XQ27.1) WILD-TYPE   17   46
   clus
vv  AMP PEAK 16(XQ27.1) MUTATED AMP PEAK 16(XQ27.1) WILD-TYPE
  0                           1                            17
  1                           7                            46
                               vv
clus                            M0 M1 MX
  AMP PEAK 16(XQ27.1) MUTATED    5  0  3
  AMP PEAK 16(XQ27.1) WILD-TYPE 34  3 27
D15V6, multiclass
    clus
vv   AMP PEAK 16(XQ27.1) MUTATED AMP PEAK 16(XQ27.1) WILD-TYPE
  M0                           5                            34
  M1                           0                             3
  MX                           3                            27
D15V7, binary
                               cls
clus                             0  1
  AMP PEAK 16(XQ27.1) MUTATED    3  5
  AMP PEAK 16(XQ27.1) WILD-TYPE 33 31
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 16(XQ27.1) MUTATED      3    5
  AMP PEAK 16(XQ27.1) WILD-TYPE   33   31
        clus
vv       AMP PEAK 16(XQ27.1) MUTATED AMP PEAK 16(XQ27.1) WILD-TYPE
  FEMALE                           3                            33
  MALE                             5                            31
                               vv
clus                            PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  AMP PEAK 16(XQ27.1) MUTATED                                     6
  AMP PEAK 16(XQ27.1) WILD-TYPE                                  58
                               vv
clus                            PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  AMP PEAK 16(XQ27.1) MUTATED                                       1
  AMP PEAK 16(XQ27.1) WILD-TYPE                                     4
                               vv
clus                            PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  AMP PEAK 16(XQ27.1) MUTATED                                                  0
  AMP PEAK 16(XQ27.1) WILD-TYPE                                                2
D15V8, multiclass
                                                  clus
vv                                                 AMP PEAK 16(XQ27.1) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                        6
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                      1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                           0
                                                  clus
vv                                                 AMP PEAK 16(XQ27.1) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                         58
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                        4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                             2
D15V9, continuous
[1] "Remove cluster labels:"      "AMP PEAK 16(XQ27.1) MUTATED"
clus
  AMP PEAK 16(XQ27.1) MUTATED AMP PEAK 16(XQ27.1) WILD-TYPE 
                            2                            19 
                   TCGA-F2-6880                    TCGA-FB-A4P5 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-FB-A5VM                    TCGA-FB-A7DR 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-H8-A6C1                    TCGA-IB-7644 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-IB-7649                    TCGA-IB-7651 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-IB-7887                    TCGA-IB-7891 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-IB-8126                    TCGA-IB-8127 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-IB-A5SS                    TCGA-LB-A7SX 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-OE-A75W 
"AMP PEAK 16(XQ27.1) WILD-TYPE" 
D15V10, continuous
[1] "Remove cluster labels:"      "AMP PEAK 16(XQ27.1) MUTATED"
clus
  AMP PEAK 16(XQ27.1) MUTATED AMP PEAK 16(XQ27.1) WILD-TYPE 
                            2                            16 
                   TCGA-FB-A4P5                    TCGA-FB-A5VM 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-FB-A7DR                    TCGA-H6-8124 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-H8-A6C1                    TCGA-IB-7644 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-IB-7649                    TCGA-IB-7651 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-IB-7891                    TCGA-IB-8126 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-IB-8127                    TCGA-IB-A5SS 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                   TCGA-LB-A7SX                    TCGA-OE-A75W 
"AMP PEAK 16(XQ27.1) WILD-TYPE" "AMP PEAK 16(XQ27.1) WILD-TYPE" 
                               vv
clus                            R0 R1 RX
  AMP PEAK 16(XQ27.1) MUTATED    5  2  1
  AMP PEAK 16(XQ27.1) WILD-TYPE 38 22  1
D15V11, multiclass
    clus
vv   AMP PEAK 16(XQ27.1) MUTATED AMP PEAK 16(XQ27.1) WILD-TYPE
  R0                           5                            38
  R1                           2                            22
  RX                           1                             1
D15V12, continuous

Clustering(16) Variable = DEL PEAK  1(1P36.32) MUTATION ANALYSIS
D16V1, survival
                                sevent
clus2                             0  1
  DEL PEAK  1(1P36.32) MUTATED    6  9
  DEL PEAK  1(1P36.32) WILD-TYPE 34 20
  DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE 
                            15                             54 
  DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE 
                             9                             20 
$`DEL PEAK  1(1P36.32) MUTATED`
TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-HZ-7289 
        0.03         5.46         2.01        36.20        20.81         7.89 
TCGA-HZ-7918 TCGA-HZ-8005 TCGA-IB-7646 TCGA-IB-7651 TCGA-IB-7886 TCGA-IB-7889 
        0.92         3.95         4.77        19.82         4.04        15.81 
TCGA-IB-8127 TCGA-IB-A5SP TCGA-IB-A6UG 
       17.16         9.86         1.35 

$`DEL PEAK  1(1P36.32) WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A545 TCGA-FB-A5VM TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        0.13        12.66         2.47        12.89         7.66        13.02 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.66         0.13         0.26        12.13        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 
        0.62         0.79         0.69         0.92         0.53         0.10 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.16         2.99         0.76         0.95         6.38         1.51 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 
       11.41        49.38        21.90        15.35        15.65        27.98 
TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 
        3.62        43.79        19.66        16.04         3.85        15.98 
TCGA-IB-8126 TCGA-IB-A5SO TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-LB-A7SX 
        0.56        10.82         7.20        15.12         0.26         4.18 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62         8.12        13.68        16.80        14.14        18.67 

  DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE 
                          0.03                           0.10 
  DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE 
                         36.20                          49.38 
  DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE 
                          5.46                           7.43 
[1] "0.0 - 36.2 (5.5)" "0.1 - 49.4 (7.4)"
                    TCGA-F2-6879                     TCGA-F2-6880 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-FB-A5VM                     TCGA-FB-A78T 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-FB-A7DR                     TCGA-FZ-5920 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-FZ-5922                     TCGA-FZ-5923 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-H8-A6C1                     TCGA-HZ-7289 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-HZ-7918                     TCGA-HZ-7919 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-HZ-7922                     TCGA-HZ-7923 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-HZ-7924                     TCGA-HZ-7925 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-HZ-7926                     TCGA-HZ-8001 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-HZ-8002                     TCGA-HZ-8003 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-HZ-8005                     TCGA-HZ-8315 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-HZ-8317                     TCGA-HZ-8519 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-HZ-8636                     TCGA-HZ-8638 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-HZ-A49G                     TCGA-HZ-A49H 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-HZ-A4BH                     TCGA-HZ-A4BK 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-IB-7644                     TCGA-IB-7645 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-IB-7646                     TCGA-IB-7647 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-IB-7649                     TCGA-IB-7651 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-IB-7652                     TCGA-IB-7885 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-IB-7886                     TCGA-IB-7887 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-IB-7888                     TCGA-IB-7889 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-IB-7890                     TCGA-IB-7891 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-IB-7893                     TCGA-IB-7897 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-IB-8126                     TCGA-IB-8127 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-IB-A5SO                     TCGA-IB-A5SP 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-IB-A5SQ                     TCGA-IB-A5SS 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-IB-A5ST                     TCGA-IB-A6UG 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-LB-A7SX                     TCGA-OE-A75W 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-PZ-A5RE                     TCGA-Q3-A5QY 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-US-A779                     TCGA-US-A77E 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-US-A77J 
"DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-F2-6879                     TCGA-F2-6880 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-FB-A5VM                     TCGA-FB-A78T 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-FB-A7DR                     TCGA-FZ-5920 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-FZ-5922                     TCGA-FZ-5923 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-H8-A6C1                     TCGA-HZ-7289 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-HZ-7918                     TCGA-HZ-7919 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-HZ-7922                     TCGA-HZ-7923 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-HZ-7924                     TCGA-HZ-7925 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-HZ-7926                     TCGA-HZ-8001 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-HZ-8002                     TCGA-HZ-8003 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-HZ-8005                     TCGA-HZ-8315 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-HZ-8317                     TCGA-HZ-8519 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-HZ-8636                     TCGA-HZ-8638 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-HZ-A49G                     TCGA-HZ-A49H 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-HZ-A4BH                     TCGA-HZ-A4BK 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-IB-7644                     TCGA-IB-7645 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-IB-7646                     TCGA-IB-7647 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-IB-7649                     TCGA-IB-7651 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-IB-7652                     TCGA-IB-7885 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-IB-7886                     TCGA-IB-7887 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-IB-7888                     TCGA-IB-7889 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-IB-7890                     TCGA-IB-7891 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-IB-7893                     TCGA-IB-7897 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-IB-8126                     TCGA-IB-8127 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-IB-A5SO                     TCGA-IB-A5SP 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-IB-A5SQ                     TCGA-IB-A5SS 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-IB-A5ST                     TCGA-IB-A6UG 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-LB-A7SX                     TCGA-OE-A75W 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-PZ-A5RE                     TCGA-Q3-A5QY 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-US-A779                     TCGA-US-A77E 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-US-A77J 
"DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-F2-6879                     TCGA-F2-6880 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-FB-A5VM                     TCGA-FB-A78T 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-FB-A7DR                     TCGA-FZ-5920 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-FZ-5922                     TCGA-FZ-5923 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-H8-A6C1                     TCGA-HZ-7289 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-HZ-7918                     TCGA-HZ-7919 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-HZ-7922                     TCGA-HZ-7923 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-HZ-7924                     TCGA-HZ-7925 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-HZ-7926                     TCGA-HZ-8001 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-HZ-8002                     TCGA-HZ-8003 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-HZ-8005                     TCGA-HZ-8315 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-HZ-8317                     TCGA-HZ-8519 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-HZ-8636                     TCGA-HZ-8638 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-HZ-A49G                     TCGA-HZ-A49H 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-HZ-A4BH                     TCGA-HZ-A4BK 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-IB-7644                     TCGA-IB-7645 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-IB-7646                     TCGA-IB-7647 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-IB-7649                     TCGA-IB-7651 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-IB-7652                     TCGA-IB-7885 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-IB-7886                     TCGA-IB-7887 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-IB-7888                     TCGA-IB-7889 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-IB-7890                     TCGA-IB-7891 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-IB-7893                     TCGA-IB-7897 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-IB-8126                     TCGA-IB-8127 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-IB-A5SO                     TCGA-IB-A5SP 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-IB-A5SQ                     TCGA-IB-A5SS 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-IB-A5ST                     TCGA-IB-A6UG 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-LB-A7SX                     TCGA-OE-A75W 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-PZ-A5RE                     TCGA-Q3-A5QY 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-US-A779                     TCGA-US-A77E 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-US-A77J 
"DEL PEAK  1(1P36.32) WILD-TYPE" 
[1] "hr=" "1.4"
D16V2, continuous
                                vv
clus                             STAGE IA STAGE IB STAGE IIA STAGE IIB
  DEL PEAK  1(1P36.32) MUTATED          0        0         3        11
  DEL PEAK  1(1P36.32) WILD-TYPE        2        4         8        39
                                vv
clus                             STAGE III STAGE IV
  DEL PEAK  1(1P36.32) MUTATED           0        1
  DEL PEAK  1(1P36.32) WILD-TYPE         2        2
D16V3, multiclass
                                vv
clus                             T1+T2 T3+T4
  DEL PEAK  1(1P36.32) MUTATED       0    15
  DEL PEAK  1(1P36.32) WILD-TYPE     7    50
D16V4, multiclass
       clus
vv      DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  T1+T2                            0                              7
  T3+T4                           15                             50
D16V5, binary
                                cls
clus                              0  1
  DEL PEAK  1(1P36.32) MUTATED    2 12
  DEL PEAK  1(1P36.32) WILD-TYPE 16 41
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.32) MUTATED      2   12
  DEL PEAK  1(1P36.32) WILD-TYPE   16   41
   clus
vv  DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  0                            2                             16
  1                           12                             41
                                vv
clus                             M0 M1 MX
  DEL PEAK  1(1P36.32) MUTATED   12  1  2
  DEL PEAK  1(1P36.32) WILD-TYPE 27  2 28
D16V6, multiclass
    clus
vv   DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  M0                           12                             27
  M1                            1                              2
  MX                            2                             28
D16V7, binary
                                cls
clus                              0  1
  DEL PEAK  1(1P36.32) MUTATED    3 12
  DEL PEAK  1(1P36.32) WILD-TYPE 33 24
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.32) MUTATED      3   12
  DEL PEAK  1(1P36.32) WILD-TYPE   33   24
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  FEMALE                            3                             33
  MALE                             12                             24
                                vv
clus                             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK  1(1P36.32) MUTATED                                    13
  DEL PEAK  1(1P36.32) WILD-TYPE                                  51
                                vv
clus                             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK  1(1P36.32) MUTATED                                       1
  DEL PEAK  1(1P36.32) WILD-TYPE                                     4
                                vv
clus                             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK  1(1P36.32) MUTATED                                                  1
  DEL PEAK  1(1P36.32) WILD-TYPE                                                1
D16V8, multiclass
                                                  clus
vv                                                 DEL PEAK  1(1P36.32) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                        13
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                       1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                            1
                                                  clus
vv                                                 DEL PEAK  1(1P36.32) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                          51
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                         4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                              1
D16V9, continuous
D16V10, continuous
                                vv
clus                             R0 R1 RX
  DEL PEAK  1(1P36.32) MUTATED    8  6  1
  DEL PEAK  1(1P36.32) WILD-TYPE 35 18  1
D16V11, multiclass
    clus
vv   DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  R0                            8                             35
  R1                            6                             18
  RX                            1                              1
D16V12, continuous

Clustering(17) Variable = DEL PEAK  2(1P36.11) MUTATION ANALYSIS
D17V1, survival
                                sevent
clus2                             0  1
  DEL PEAK  2(1P36.11) MUTATED   10 11
  DEL PEAK  2(1P36.11) WILD-TYPE 30 18
  DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE 
                            21                             48 
  DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE 
                            11                             18 
$`DEL PEAK  2(1P36.11) MUTATED`
TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H8-A6C1 
        0.03         5.46         2.01        36.20        20.81        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7925 TCGA-HZ-8005 TCGA-IB-7646 TCGA-IB-7651 
        7.89         0.92        11.87         3.95         4.77        19.82 
TCGA-IB-7652 TCGA-IB-7886 TCGA-IB-7889 TCGA-IB-7893 TCGA-IB-8127 TCGA-IB-A5SP 
       15.65         4.04        15.81         3.85        17.16         9.86 
TCGA-IB-A5SS TCGA-IB-A6UG TCGA-OE-A75W 
       15.12         1.35         3.62 

$`DEL PEAK  2(1P36.11) WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A545 TCGA-FB-A5VM TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7919 
        0.13        12.66         2.47        12.89         7.66         0.66 
TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 
        0.13         0.26        12.13         0.26         0.62         0.79 
TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 TCGA-HZ-8638 
        0.69         0.92         0.53         0.10         0.16         2.99 
TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 
        0.76         0.95         6.38         1.51        11.41        49.38 
TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7885 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7890 
       21.90        15.35        27.98         3.62        43.79        19.66 
TCGA-IB-7891 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-A5SO TCGA-IB-A5SQ TCGA-IB-A5ST 
       16.04        15.98         0.56        10.82         7.20         0.26 
TCGA-LB-A7SX TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        4.18         8.12        13.68        16.80        14.14        18.67 

  DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE 
                          0.03                           0.10 
  DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE 
                         36.20                          49.38 
  DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE 
                          7.89                           7.15 
[1] "0.0 - 36.2 (7.9)" "0.1 - 49.4 (7.2)"
                    TCGA-F2-6879                     TCGA-F2-6880 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-FB-A5VM                     TCGA-FB-A78T 
"DEL PEAK  2(1P36.11) WILD-TYPE"   "DEL PEAK  2(1P36.11) MUTATED" 
                    TCGA-FB-A7DR                     TCGA-FZ-5920 
  "DEL PEAK  2(1P36.11) MUTATED"   "DEL PEAK  2(1P36.11) MUTATED" 
                    TCGA-FZ-5922                     TCGA-FZ-5923 
  "DEL PEAK  2(1P36.11) MUTATED"   "DEL PEAK  2(1P36.11) MUTATED" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-H8-A6C1                     TCGA-HZ-7289 
  "DEL PEAK  2(1P36.11) MUTATED"   "DEL PEAK  2(1P36.11) MUTATED" 
                    TCGA-HZ-7918                     TCGA-HZ-7919 
  "DEL PEAK  2(1P36.11) MUTATED" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-HZ-7922                     TCGA-HZ-7923 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-HZ-7924                     TCGA-HZ-7925 
"DEL PEAK  2(1P36.11) WILD-TYPE"   "DEL PEAK  2(1P36.11) MUTATED" 
                    TCGA-HZ-7926                     TCGA-HZ-8001 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-HZ-8002                     TCGA-HZ-8003 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-HZ-8005                     TCGA-HZ-8315 
  "DEL PEAK  2(1P36.11) MUTATED" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-HZ-8317                     TCGA-HZ-8519 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-HZ-8636                     TCGA-HZ-8638 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-HZ-A49G                     TCGA-HZ-A49H 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-HZ-A4BH                     TCGA-HZ-A4BK 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-IB-7644                     TCGA-IB-7645 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-IB-7646                     TCGA-IB-7647 
  "DEL PEAK  2(1P36.11) MUTATED" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-IB-7649                     TCGA-IB-7651 
"DEL PEAK  2(1P36.11) WILD-TYPE"   "DEL PEAK  2(1P36.11) MUTATED" 
                    TCGA-IB-7652                     TCGA-IB-7885 
  "DEL PEAK  2(1P36.11) MUTATED" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-IB-7886                     TCGA-IB-7887 
  "DEL PEAK  2(1P36.11) MUTATED" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-IB-7888                     TCGA-IB-7889 
"DEL PEAK  2(1P36.11) WILD-TYPE"   "DEL PEAK  2(1P36.11) MUTATED" 
                    TCGA-IB-7890                     TCGA-IB-7891 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-IB-7893                     TCGA-IB-7897 
  "DEL PEAK  2(1P36.11) MUTATED" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-IB-8126                     TCGA-IB-8127 
"DEL PEAK  2(1P36.11) WILD-TYPE"   "DEL PEAK  2(1P36.11) MUTATED" 
                    TCGA-IB-A5SO                     TCGA-IB-A5SP 
"DEL PEAK  2(1P36.11) WILD-TYPE"   "DEL PEAK  2(1P36.11) MUTATED" 
                    TCGA-IB-A5SQ                     TCGA-IB-A5SS 
"DEL PEAK  2(1P36.11) WILD-TYPE"   "DEL PEAK  2(1P36.11) MUTATED" 
                    TCGA-IB-A5ST                     TCGA-IB-A6UG 
"DEL PEAK  2(1P36.11) WILD-TYPE"   "DEL PEAK  2(1P36.11) MUTATED" 
                    TCGA-LB-A7SX                     TCGA-OE-A75W 
"DEL PEAK  2(1P36.11) WILD-TYPE"   "DEL PEAK  2(1P36.11) MUTATED" 
                    TCGA-PZ-A5RE                     TCGA-Q3-A5QY 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-US-A779                     TCGA-US-A77E 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-US-A77J 
"DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-F2-6879                     TCGA-F2-6880 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-FB-A5VM                     TCGA-FB-A78T 
"DEL PEAK  2(1P36.11) WILD-TYPE"   "DEL PEAK  2(1P36.11) MUTATED" 
                    TCGA-FB-A7DR                     TCGA-FZ-5920 
  "DEL PEAK  2(1P36.11) MUTATED"   "DEL PEAK  2(1P36.11) MUTATED" 
                    TCGA-FZ-5922                     TCGA-FZ-5923 
  "DEL PEAK  2(1P36.11) MUTATED"   "DEL PEAK  2(1P36.11) MUTATED" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-H8-A6C1                     TCGA-HZ-7289 
  "DEL PEAK  2(1P36.11) MUTATED"   "DEL PEAK  2(1P36.11) MUTATED" 
                    TCGA-HZ-7918                     TCGA-HZ-7919 
  "DEL PEAK  2(1P36.11) MUTATED" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-HZ-7922                     TCGA-HZ-7923 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-HZ-7924                     TCGA-HZ-7925 
"DEL PEAK  2(1P36.11) WILD-TYPE"   "DEL PEAK  2(1P36.11) MUTATED" 
                    TCGA-HZ-7926                     TCGA-HZ-8001 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-HZ-8002                     TCGA-HZ-8003 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-HZ-8005                     TCGA-HZ-8315 
  "DEL PEAK  2(1P36.11) MUTATED" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-HZ-8317                     TCGA-HZ-8519 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-HZ-8636                     TCGA-HZ-8638 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-HZ-A49G                     TCGA-HZ-A49H 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-HZ-A4BH                     TCGA-HZ-A4BK 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-IB-7644                     TCGA-IB-7645 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-IB-7646                     TCGA-IB-7647 
  "DEL PEAK  2(1P36.11) MUTATED" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-IB-7649                     TCGA-IB-7651 
"DEL PEAK  2(1P36.11) WILD-TYPE"   "DEL PEAK  2(1P36.11) MUTATED" 
                    TCGA-IB-7652                     TCGA-IB-7885 
  "DEL PEAK  2(1P36.11) MUTATED" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-IB-7886                     TCGA-IB-7887 
  "DEL PEAK  2(1P36.11) MUTATED" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-IB-7888                     TCGA-IB-7889 
"DEL PEAK  2(1P36.11) WILD-TYPE"   "DEL PEAK  2(1P36.11) MUTATED" 
                    TCGA-IB-7890                     TCGA-IB-7891 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-IB-7893                     TCGA-IB-7897 
  "DEL PEAK  2(1P36.11) MUTATED" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-IB-8126                     TCGA-IB-8127 
"DEL PEAK  2(1P36.11) WILD-TYPE"   "DEL PEAK  2(1P36.11) MUTATED" 
                    TCGA-IB-A5SO                     TCGA-IB-A5SP 
"DEL PEAK  2(1P36.11) WILD-TYPE"   "DEL PEAK  2(1P36.11) MUTATED" 
                    TCGA-IB-A5SQ                     TCGA-IB-A5SS 
"DEL PEAK  2(1P36.11) WILD-TYPE"   "DEL PEAK  2(1P36.11) MUTATED" 
                    TCGA-IB-A5ST                     TCGA-IB-A6UG 
"DEL PEAK  2(1P36.11) WILD-TYPE"   "DEL PEAK  2(1P36.11) MUTATED" 
                    TCGA-LB-A7SX                     TCGA-OE-A75W 
"DEL PEAK  2(1P36.11) WILD-TYPE"   "DEL PEAK  2(1P36.11) MUTATED" 
                    TCGA-PZ-A5RE                     TCGA-Q3-A5QY 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-US-A779                     TCGA-US-A77E 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-US-A77J 
"DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-F2-6879                     TCGA-F2-6880 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-FB-A5VM                     TCGA-FB-A78T 
"DEL PEAK  2(1P36.11) WILD-TYPE"   "DEL PEAK  2(1P36.11) MUTATED" 
                    TCGA-FB-A7DR                     TCGA-FZ-5920 
  "DEL PEAK  2(1P36.11) MUTATED"   "DEL PEAK  2(1P36.11) MUTATED" 
                    TCGA-FZ-5922                     TCGA-FZ-5923 
  "DEL PEAK  2(1P36.11) MUTATED"   "DEL PEAK  2(1P36.11) MUTATED" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-H8-A6C1                     TCGA-HZ-7289 
  "DEL PEAK  2(1P36.11) MUTATED"   "DEL PEAK  2(1P36.11) MUTATED" 
                    TCGA-HZ-7918                     TCGA-HZ-7919 
  "DEL PEAK  2(1P36.11) MUTATED" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-HZ-7922                     TCGA-HZ-7923 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-HZ-7924                     TCGA-HZ-7925 
"DEL PEAK  2(1P36.11) WILD-TYPE"   "DEL PEAK  2(1P36.11) MUTATED" 
                    TCGA-HZ-7926                     TCGA-HZ-8001 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-HZ-8002                     TCGA-HZ-8003 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-HZ-8005                     TCGA-HZ-8315 
  "DEL PEAK  2(1P36.11) MUTATED" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-HZ-8317                     TCGA-HZ-8519 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-HZ-8636                     TCGA-HZ-8638 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-HZ-A49G                     TCGA-HZ-A49H 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-HZ-A4BH                     TCGA-HZ-A4BK 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-IB-7644                     TCGA-IB-7645 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-IB-7646                     TCGA-IB-7647 
  "DEL PEAK  2(1P36.11) MUTATED" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-IB-7649                     TCGA-IB-7651 
"DEL PEAK  2(1P36.11) WILD-TYPE"   "DEL PEAK  2(1P36.11) MUTATED" 
                    TCGA-IB-7652                     TCGA-IB-7885 
  "DEL PEAK  2(1P36.11) MUTATED" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-IB-7886                     TCGA-IB-7887 
  "DEL PEAK  2(1P36.11) MUTATED" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-IB-7888                     TCGA-IB-7889 
"DEL PEAK  2(1P36.11) WILD-TYPE"   "DEL PEAK  2(1P36.11) MUTATED" 
                    TCGA-IB-7890                     TCGA-IB-7891 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-IB-7893                     TCGA-IB-7897 
  "DEL PEAK  2(1P36.11) MUTATED" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-IB-8126                     TCGA-IB-8127 
"DEL PEAK  2(1P36.11) WILD-TYPE"   "DEL PEAK  2(1P36.11) MUTATED" 
                    TCGA-IB-A5SO                     TCGA-IB-A5SP 
"DEL PEAK  2(1P36.11) WILD-TYPE"   "DEL PEAK  2(1P36.11) MUTATED" 
                    TCGA-IB-A5SQ                     TCGA-IB-A5SS 
"DEL PEAK  2(1P36.11) WILD-TYPE"   "DEL PEAK  2(1P36.11) MUTATED" 
                    TCGA-IB-A5ST                     TCGA-IB-A6UG 
"DEL PEAK  2(1P36.11) WILD-TYPE"   "DEL PEAK  2(1P36.11) MUTATED" 
                    TCGA-LB-A7SX                     TCGA-OE-A75W 
"DEL PEAK  2(1P36.11) WILD-TYPE"   "DEL PEAK  2(1P36.11) MUTATED" 
                    TCGA-PZ-A5RE                     TCGA-Q3-A5QY 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-US-A779                     TCGA-US-A77E 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-US-A77J 
"DEL PEAK  2(1P36.11) WILD-TYPE" 
[1] "hr=" "1.4"
D17V2, continuous
                                vv
clus                             STAGE IA STAGE IB STAGE IIA STAGE IIB
  DEL PEAK  2(1P36.11) MUTATED          0        0         6        14
  DEL PEAK  2(1P36.11) WILD-TYPE        2        4         5        36
                                vv
clus                             STAGE III STAGE IV
  DEL PEAK  2(1P36.11) MUTATED           0        1
  DEL PEAK  2(1P36.11) WILD-TYPE         2        2
D17V3, multiclass
                                vv
clus                             T1+T2 T3+T4
  DEL PEAK  2(1P36.11) MUTATED       0    21
  DEL PEAK  2(1P36.11) WILD-TYPE     7    44
D17V4, multiclass
       clus
vv      DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  T1+T2                            0                              7
  T3+T4                           21                             44
D17V5, binary
                                cls
clus                              0  1
  DEL PEAK  2(1P36.11) MUTATED    5 15
  DEL PEAK  2(1P36.11) WILD-TYPE 13 38
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  2(1P36.11) MUTATED      5   15
  DEL PEAK  2(1P36.11) WILD-TYPE   13   38
   clus
vv  DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  0                            5                             13
  1                           15                             38
                                vv
clus                             M0 M1 MX
  DEL PEAK  2(1P36.11) MUTATED   16  1  4
  DEL PEAK  2(1P36.11) WILD-TYPE 23  2 26
D17V6, multiclass
    clus
vv   DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  M0                           16                             23
  M1                            1                              2
  MX                            4                             26
D17V7, binary
                                cls
clus                              0  1
  DEL PEAK  2(1P36.11) MUTATED    5 16
  DEL PEAK  2(1P36.11) WILD-TYPE 31 20
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  2(1P36.11) MUTATED      5   16
  DEL PEAK  2(1P36.11) WILD-TYPE   31   20
        clus
vv       DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  FEMALE                            5                             31
  MALE                             16                             20
                                vv
clus                             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK  2(1P36.11) MUTATED                                    18
  DEL PEAK  2(1P36.11) WILD-TYPE                                  46
                                vv
clus                             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK  2(1P36.11) MUTATED                                       2
  DEL PEAK  2(1P36.11) WILD-TYPE                                     3
                                vv
clus                             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK  2(1P36.11) MUTATED                                                  1
  DEL PEAK  2(1P36.11) WILD-TYPE                                                1
D17V8, multiclass
                                                  clus
vv                                                 DEL PEAK  2(1P36.11) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                        18
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                       2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                            1
                                                  clus
vv                                                 DEL PEAK  2(1P36.11) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                          46
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                         3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                              1
D17V9, continuous
D17V10, continuous
                                vv
clus                             R0 R1 RX
  DEL PEAK  2(1P36.11) MUTATED   13  7  1
  DEL PEAK  2(1P36.11) WILD-TYPE 30 17  1
D17V11, multiclass
    clus
vv   DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  R0                           13                             30
  R1                            7                             17
  RX                            1                              1
D17V12, continuous

Clustering(18) Variable = DEL PEAK  3(1Q42.2) MUTATION ANALYSIS
D18V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  3(1Q42.2) MUTATED    1  2
  DEL PEAK  3(1Q42.2) WILD-TYPE 39 27
  DEL PEAK  3(1Q42.2) MUTATED DEL PEAK  3(1Q42.2) WILD-TYPE 
                            3                            66 
  DEL PEAK  3(1Q42.2) MUTATED DEL PEAK  3(1Q42.2) WILD-TYPE 
                            2                            27 
$`DEL PEAK  3(1Q42.2) MUTATED`
TCGA-HZ-8005 TCGA-IB-A5SP TCGA-US-A77E 
        3.95         9.86        14.14 

$`DEL PEAK  3(1Q42.2) WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
        0.13        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 
       36.20        20.81        12.89         7.66        13.02         7.89 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.92         0.66         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8317 
        0.26         0.62         0.79         0.69         0.92         0.53 
TCGA-HZ-8519 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH 
        0.10         0.16         2.99         0.76         0.95         6.38 
TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 
        1.51        11.41        49.38         4.77        21.90        15.35 
TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 
       19.82        15.65        27.98         4.04         3.62        43.79 
TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 
       15.81        19.66        16.04         3.85        15.98         0.56 
TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG 
       17.16        10.82         7.20        15.12         0.26         1.35 
TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77J 
        4.18         3.62         8.12        13.68        16.80        18.67 

  DEL PEAK  3(1Q42.2) MUTATED DEL PEAK  3(1Q42.2) WILD-TYPE 
                         3.95                          0.03 
  DEL PEAK  3(1Q42.2) MUTATED DEL PEAK  3(1Q42.2) WILD-TYPE 
                        14.14                         49.38 
  DEL PEAK  3(1Q42.2) MUTATED DEL PEAK  3(1Q42.2) WILD-TYPE 
                         9.86                          7.15 
[1] "4.0 - 14.1 (9.9)" "0.0 - 49.4 (7.2)"
                   TCGA-F2-6879                    TCGA-F2-6880 
"DEL PEAK  3(1Q42.2) WILD-TYPE" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"DEL PEAK  3(1Q42.2) WILD-TYPE" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"DEL PEAK  3(1Q42.2) WILD-TYPE" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"DEL PEAK  3(1Q42.2) WILD-TYPE" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-FB-A5VM                    TCGA-FB-A78T 
"DEL PEAK  3(1Q42.2) WILD-TYPE" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-FB-A7DR                    TCGA-FZ-5920 
"DEL PEAK  3(1Q42.2) WILD-TYPE" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-FZ-5922                    TCGA-FZ-5923 
"DEL PEAK  3(1Q42.2) WILD-TYPE" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
"DEL PEAK  3(1Q42.2) WILD-TYPE" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-H8-A6C1                    TCGA-HZ-7289 
"DEL PEAK  3(1Q42.2) WILD-TYPE" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-HZ-7918                    TCGA-HZ-7919 
"DEL PEAK  3(1Q42.2) WILD-TYPE" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-HZ-7922                    TCGA-HZ-7923 
"DEL PEAK  3(1Q42.2) WILD-TYPE" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-HZ-7924                    TCGA-HZ-7925 
"DEL PEAK  3(1Q42.2) WILD-TYPE" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-HZ-7926                    TCGA-HZ-8001 
"DEL PEAK  3(1Q42.2) WILD-TYPE" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-HZ-8002                    TCGA-HZ-8003 
"DEL PEAK  3(1Q42.2) WILD-TYPE" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-HZ-8005                    TCGA-HZ-8315 
  "DEL PEAK  3(1Q42.2) MUTATED" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-HZ-8317                    TCGA-HZ-8519 
"DEL PEAK  3(1Q42.2) WILD-TYPE" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-HZ-8636                    TCGA-HZ-8638 
"DEL PEAK  3(1Q42.2) WILD-TYPE" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-HZ-A49G                    TCGA-HZ-A49H 
"DEL PEAK  3(1Q42.2) WILD-TYPE" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-HZ-A4BH                    TCGA-HZ-A4BK 
"DEL PEAK  3(1Q42.2) WILD-TYPE" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-IB-7644                    TCGA-IB-7645 
"DEL PEAK  3(1Q42.2) WILD-TYPE" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-IB-7646                    TCGA-IB-7647 
"DEL PEAK  3(1Q42.2) WILD-TYPE" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-IB-7649                    TCGA-IB-7651 
"DEL PEAK  3(1Q42.2) WILD-TYPE" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-IB-7652                    TCGA-IB-7885 
"DEL PEAK  3(1Q42.2) WILD-TYPE" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-IB-7886                    TCGA-IB-7887 
"DEL PEAK  3(1Q42.2) WILD-TYPE" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-IB-7888                    TCGA-IB-7889 
"DEL PEAK  3(1Q42.2) WILD-TYPE" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-IB-7890                    TCGA-IB-7891 
"DEL PEAK  3(1Q42.2) WILD-TYPE" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-IB-7893                    TCGA-IB-7897 
"DEL PEAK  3(1Q42.2) WILD-TYPE" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-IB-8126                    TCGA-IB-8127 
"DEL PEAK  3(1Q42.2) WILD-TYPE" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-IB-A5SO                    TCGA-IB-A5SP 
"DEL PEAK  3(1Q42.2) WILD-TYPE"   "DEL PEAK  3(1Q42.2) MUTATED" 
                   TCGA-IB-A5SQ                    TCGA-IB-A5SS 
"DEL PEAK  3(1Q42.2) WILD-TYPE" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-IB-A5ST                    TCGA-IB-A6UG 
"DEL PEAK  3(1Q42.2) WILD-TYPE" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-LB-A7SX                    TCGA-OE-A75W 
"DEL PEAK  3(1Q42.2) WILD-TYPE" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-PZ-A5RE                    TCGA-Q3-A5QY 
"DEL PEAK  3(1Q42.2) WILD-TYPE" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-US-A779                    TCGA-US-A77E 
"DEL PEAK  3(1Q42.2) WILD-TYPE"   "DEL PEAK  3(1Q42.2) MUTATED" 
                   TCGA-US-A77J 
"DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-F2-6879                    TCGA-F2-6880 
"DEL PEAK  3(1Q42.2) WILD-TYPE" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"DEL PEAK  3(1Q42.2) WILD-TYPE" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"DEL PEAK  3(1Q42.2) WILD-TYPE" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"DEL PEAK  3(1Q42.2) WILD-TYPE" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-FB-A5VM                    TCGA-FB-A78T 
"DEL PEAK  3(1Q42.2) WILD-TYPE" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-FB-A7DR                    TCGA-FZ-5920 
"DEL PEAK  3(1Q42.2) WILD-TYPE" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-FZ-5922                    TCGA-FZ-5923 
"DEL PEAK  3(1Q42.2) WILD-TYPE" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
"DEL PEAK  3(1Q42.2) WILD-TYPE" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-H8-A6C1                    TCGA-HZ-7289 
"DEL PEAK  3(1Q42.2) WILD-TYPE" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-HZ-7918                    TCGA-HZ-7919 
"DEL PEAK  3(1Q42.2) WILD-TYPE" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-HZ-7922                    TCGA-HZ-7923 
"DEL PEAK  3(1Q42.2) WILD-TYPE" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-HZ-7924                    TCGA-HZ-7925 
"DEL PEAK  3(1Q42.2) WILD-TYPE" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-HZ-7926                    TCGA-HZ-8001 
"DEL PEAK  3(1Q42.2) WILD-TYPE" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-HZ-8002                    TCGA-HZ-8003 
"DEL PEAK  3(1Q42.2) WILD-TYPE" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-HZ-8005                    TCGA-HZ-8315 
  "DEL PEAK  3(1Q42.2) MUTATED" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-HZ-8317                    TCGA-HZ-8519 
"DEL PEAK  3(1Q42.2) WILD-TYPE" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-HZ-8636                    TCGA-HZ-8638 
"DEL PEAK  3(1Q42.2) WILD-TYPE" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-HZ-A49G                    TCGA-HZ-A49H 
"DEL PEAK  3(1Q42.2) WILD-TYPE" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-HZ-A4BH                    TCGA-HZ-A4BK 
"DEL PEAK  3(1Q42.2) WILD-TYPE" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-IB-7644                    TCGA-IB-7645 
"DEL PEAK  3(1Q42.2) WILD-TYPE" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-IB-7646                    TCGA-IB-7647 
"DEL PEAK  3(1Q42.2) WILD-TYPE" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-IB-7649                    TCGA-IB-7651 
"DEL PEAK  3(1Q42.2) WILD-TYPE" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-IB-7652                    TCGA-IB-7885 
"DEL PEAK  3(1Q42.2) WILD-TYPE" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-IB-7886                    TCGA-IB-7887 
"DEL PEAK  3(1Q42.2) WILD-TYPE" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-IB-7888                    TCGA-IB-7889 
"DEL PEAK  3(1Q42.2) WILD-TYPE" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-IB-7890                    TCGA-IB-7891 
"DEL PEAK  3(1Q42.2) WILD-TYPE" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-IB-7893                    TCGA-IB-7897 
"DEL PEAK  3(1Q42.2) WILD-TYPE" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-IB-8126                    TCGA-IB-8127 
"DEL PEAK  3(1Q42.2) WILD-TYPE" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-IB-A5SO                    TCGA-IB-A5SP 
"DEL PEAK  3(1Q42.2) WILD-TYPE"   "DEL PEAK  3(1Q42.2) MUTATED" 
                   TCGA-IB-A5SQ                    TCGA-IB-A5SS 
"DEL PEAK  3(1Q42.2) WILD-TYPE" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-IB-A5ST                    TCGA-IB-A6UG 
"DEL PEAK  3(1Q42.2) WILD-TYPE" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-LB-A7SX                    TCGA-OE-A75W 
"DEL PEAK  3(1Q42.2) WILD-TYPE" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-PZ-A5RE                    TCGA-Q3-A5QY 
"DEL PEAK  3(1Q42.2) WILD-TYPE" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-US-A779                    TCGA-US-A77E 
"DEL PEAK  3(1Q42.2) WILD-TYPE"   "DEL PEAK  3(1Q42.2) MUTATED" 
                   TCGA-US-A77J 
"DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-F2-6879                    TCGA-F2-6880 
"DEL PEAK  3(1Q42.2) WILD-TYPE" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"DEL PEAK  3(1Q42.2) WILD-TYPE" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"DEL PEAK  3(1Q42.2) WILD-TYPE" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"DEL PEAK  3(1Q42.2) WILD-TYPE" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-FB-A5VM                    TCGA-FB-A78T 
"DEL PEAK  3(1Q42.2) WILD-TYPE" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-FB-A7DR                    TCGA-FZ-5920 
"DEL PEAK  3(1Q42.2) WILD-TYPE" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-FZ-5922                    TCGA-FZ-5923 
"DEL PEAK  3(1Q42.2) WILD-TYPE" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
"DEL PEAK  3(1Q42.2) WILD-TYPE" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-H8-A6C1                    TCGA-HZ-7289 
"DEL PEAK  3(1Q42.2) WILD-TYPE" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-HZ-7918                    TCGA-HZ-7919 
"DEL PEAK  3(1Q42.2) WILD-TYPE" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-HZ-7922                    TCGA-HZ-7923 
"DEL PEAK  3(1Q42.2) WILD-TYPE" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-HZ-7924                    TCGA-HZ-7925 
"DEL PEAK  3(1Q42.2) WILD-TYPE" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-HZ-7926                    TCGA-HZ-8001 
"DEL PEAK  3(1Q42.2) WILD-TYPE" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-HZ-8002                    TCGA-HZ-8003 
"DEL PEAK  3(1Q42.2) WILD-TYPE" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-HZ-8005                    TCGA-HZ-8315 
  "DEL PEAK  3(1Q42.2) MUTATED" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-HZ-8317                    TCGA-HZ-8519 
"DEL PEAK  3(1Q42.2) WILD-TYPE" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-HZ-8636                    TCGA-HZ-8638 
"DEL PEAK  3(1Q42.2) WILD-TYPE" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-HZ-A49G                    TCGA-HZ-A49H 
"DEL PEAK  3(1Q42.2) WILD-TYPE" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-HZ-A4BH                    TCGA-HZ-A4BK 
"DEL PEAK  3(1Q42.2) WILD-TYPE" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-IB-7644                    TCGA-IB-7645 
"DEL PEAK  3(1Q42.2) WILD-TYPE" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-IB-7646                    TCGA-IB-7647 
"DEL PEAK  3(1Q42.2) WILD-TYPE" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-IB-7649                    TCGA-IB-7651 
"DEL PEAK  3(1Q42.2) WILD-TYPE" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-IB-7652                    TCGA-IB-7885 
"DEL PEAK  3(1Q42.2) WILD-TYPE" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-IB-7886                    TCGA-IB-7887 
"DEL PEAK  3(1Q42.2) WILD-TYPE" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-IB-7888                    TCGA-IB-7889 
"DEL PEAK  3(1Q42.2) WILD-TYPE" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-IB-7890                    TCGA-IB-7891 
"DEL PEAK  3(1Q42.2) WILD-TYPE" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-IB-7893                    TCGA-IB-7897 
"DEL PEAK  3(1Q42.2) WILD-TYPE" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-IB-8126                    TCGA-IB-8127 
"DEL PEAK  3(1Q42.2) WILD-TYPE" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-IB-A5SO                    TCGA-IB-A5SP 
"DEL PEAK  3(1Q42.2) WILD-TYPE"   "DEL PEAK  3(1Q42.2) MUTATED" 
                   TCGA-IB-A5SQ                    TCGA-IB-A5SS 
"DEL PEAK  3(1Q42.2) WILD-TYPE" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-IB-A5ST                    TCGA-IB-A6UG 
"DEL PEAK  3(1Q42.2) WILD-TYPE" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-LB-A7SX                    TCGA-OE-A75W 
"DEL PEAK  3(1Q42.2) WILD-TYPE" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-PZ-A5RE                    TCGA-Q3-A5QY 
"DEL PEAK  3(1Q42.2) WILD-TYPE" "DEL PEAK  3(1Q42.2) WILD-TYPE" 
                   TCGA-US-A779                    TCGA-US-A77E 
"DEL PEAK  3(1Q42.2) WILD-TYPE"   "DEL PEAK  3(1Q42.2) MUTATED" 
                   TCGA-US-A77J 
"DEL PEAK  3(1Q42.2) WILD-TYPE" 
[1] "hr=" "2.5"
D18V2, continuous
                               vv
clus                            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III
  DEL PEAK  3(1Q42.2) MUTATED          0        0         1         2         0
  DEL PEAK  3(1Q42.2) WILD-TYPE        2        4        10        48         2
                               vv
clus                            STAGE IV
  DEL PEAK  3(1Q42.2) MUTATED          0
  DEL PEAK  3(1Q42.2) WILD-TYPE        3
D18V3, multiclass
                               vv
clus                            T1+T2 T3+T4
  DEL PEAK  3(1Q42.2) MUTATED       0     3
  DEL PEAK  3(1Q42.2) WILD-TYPE     7    62
D18V4, multiclass
       clus
vv      DEL PEAK  3(1Q42.2) MUTATED DEL PEAK  3(1Q42.2) WILD-TYPE
  T1+T2                           0                             7
  T3+T4                           3                            62
D18V5, binary
                               cls
clus                             0  1
  DEL PEAK  3(1Q42.2) MUTATED    1  2
  DEL PEAK  3(1Q42.2) WILD-TYPE 17 51
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  3(1Q42.2) MUTATED      1    2
  DEL PEAK  3(1Q42.2) WILD-TYPE   17   51
   clus
vv  DEL PEAK  3(1Q42.2) MUTATED DEL PEAK  3(1Q42.2) WILD-TYPE
  0                           1                            17
  1                           2                            51
                               vv
clus                            M0 M1 MX
  DEL PEAK  3(1Q42.2) MUTATED    1  0  2
  DEL PEAK  3(1Q42.2) WILD-TYPE 38  3 28
D18V6, multiclass
    clus
vv   DEL PEAK  3(1Q42.2) MUTATED DEL PEAK  3(1Q42.2) WILD-TYPE
  M0                           1                            38
  M1                           0                             3
  MX                           2                            28
D18V7, binary
                               cls
clus                             0  1
  DEL PEAK  3(1Q42.2) MUTATED    0  3
  DEL PEAK  3(1Q42.2) WILD-TYPE 36 33
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  3(1Q42.2) MUTATED      0    3
  DEL PEAK  3(1Q42.2) WILD-TYPE   36   33
        clus
vv       DEL PEAK  3(1Q42.2) MUTATED DEL PEAK  3(1Q42.2) WILD-TYPE
  FEMALE                           0                            36
  MALE                             3                            33
                               vv
clus                            PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK  3(1Q42.2) MUTATED                                     3
  DEL PEAK  3(1Q42.2) WILD-TYPE                                  61
                               vv
clus                            PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK  3(1Q42.2) MUTATED                                       0
  DEL PEAK  3(1Q42.2) WILD-TYPE                                     5
                               vv
clus                            PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK  3(1Q42.2) MUTATED                                                  0
  DEL PEAK  3(1Q42.2) WILD-TYPE                                                2
D18V8, multiclass
                                                  clus
vv                                                 DEL PEAK  3(1Q42.2) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                        3
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                      0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                           0
                                                  clus
vv                                                 DEL PEAK  3(1Q42.2) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                         61
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                        5
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                             2
D18V9, continuous
D18V10, continuous
                               vv
clus                            R0 R1 RX
  DEL PEAK  3(1Q42.2) MUTATED    0  3  0
  DEL PEAK  3(1Q42.2) WILD-TYPE 43 21  2
D18V11, multiclass
    clus
vv   DEL PEAK  3(1Q42.2) MUTATED DEL PEAK  3(1Q42.2) WILD-TYPE
  R0                           0                            43
  R1                           3                            21
  RX                           0                             2
D18V12, continuous

Clustering(19) Variable = DEL PEAK  4(2P23.3) MUTATION ANALYSIS
D19V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  4(2P23.3) MUTATED    5  4
  DEL PEAK  4(2P23.3) WILD-TYPE 35 25
  DEL PEAK  4(2P23.3) MUTATED DEL PEAK  4(2P23.3) WILD-TYPE 
                            9                            60 
  DEL PEAK  4(2P23.3) MUTATED DEL PEAK  4(2P23.3) WILD-TYPE 
                            4                            25 
$`DEL PEAK  4(2P23.3) MUTATED`
TCGA-H6-8124 TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-IB-7646 TCGA-IB-7652 TCGA-IB-7887 
       12.89        13.02         7.89         4.77        15.65         3.62 
TCGA-IB-7888 TCGA-IB-7890 TCGA-OE-A75W 
       43.79        19.66         3.62 

$`DEL PEAK  4(2P23.3) WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
        0.13        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-A45N TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 
       36.20        20.81         7.66         0.92         0.66         0.13 
TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 
        0.26        12.13        11.87         0.26         0.62         0.79 
TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 
        0.69         3.95         0.92         0.53         0.10         0.16 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        2.99         0.76         0.95         6.38         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7885 TCGA-IB-7886 
       49.38        21.90        15.35        19.82        27.98         4.04 
TCGA-IB-7889 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 
       15.81        16.04         3.85        15.98         0.56        17.16 
TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG 
       10.82         9.86         7.20        15.12         0.26         1.35 
TCGA-LB-A7SX TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        4.18         8.12        13.68        16.80        14.14        18.67 

  DEL PEAK  4(2P23.3) MUTATED DEL PEAK  4(2P23.3) WILD-TYPE 
                         3.62                          0.03 
  DEL PEAK  4(2P23.3) MUTATED DEL PEAK  4(2P23.3) WILD-TYPE 
                        43.79                         49.38 
  DEL PEAK  4(2P23.3) MUTATED DEL PEAK  4(2P23.3) WILD-TYPE 
                        12.89                          6.74 
[1] "3.6 - 43.8 (12.9)" "0.0 - 49.4 (6.7)" 
                   TCGA-F2-6879                    TCGA-F2-6880 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-FB-A5VM                    TCGA-FB-A78T 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-FB-A7DR                    TCGA-FZ-5920 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-FZ-5922                    TCGA-FZ-5923 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
  "DEL PEAK  4(2P23.3) MUTATED" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-H8-A6C1                    TCGA-HZ-7289 
  "DEL PEAK  4(2P23.3) MUTATED"   "DEL PEAK  4(2P23.3) MUTATED" 
                   TCGA-HZ-7918                    TCGA-HZ-7919 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-HZ-7922                    TCGA-HZ-7923 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-HZ-7924                    TCGA-HZ-7925 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-HZ-7926                    TCGA-HZ-8001 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-HZ-8002                    TCGA-HZ-8003 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-HZ-8005                    TCGA-HZ-8315 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-HZ-8317                    TCGA-HZ-8519 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-HZ-8636                    TCGA-HZ-8638 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-HZ-A49G                    TCGA-HZ-A49H 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-HZ-A4BH                    TCGA-HZ-A4BK 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-IB-7644                    TCGA-IB-7645 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-IB-7646                    TCGA-IB-7647 
  "DEL PEAK  4(2P23.3) MUTATED" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-IB-7649                    TCGA-IB-7651 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-IB-7652                    TCGA-IB-7885 
  "DEL PEAK  4(2P23.3) MUTATED" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-IB-7886                    TCGA-IB-7887 
"DEL PEAK  4(2P23.3) WILD-TYPE"   "DEL PEAK  4(2P23.3) MUTATED" 
                   TCGA-IB-7888                    TCGA-IB-7889 
  "DEL PEAK  4(2P23.3) MUTATED" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-IB-7890                    TCGA-IB-7891 
  "DEL PEAK  4(2P23.3) MUTATED" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-IB-7893                    TCGA-IB-7897 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-IB-8126                    TCGA-IB-8127 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-IB-A5SO                    TCGA-IB-A5SP 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-IB-A5SQ                    TCGA-IB-A5SS 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-IB-A5ST                    TCGA-IB-A6UG 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-LB-A7SX                    TCGA-OE-A75W 
"DEL PEAK  4(2P23.3) WILD-TYPE"   "DEL PEAK  4(2P23.3) MUTATED" 
                   TCGA-PZ-A5RE                    TCGA-Q3-A5QY 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-US-A779                    TCGA-US-A77E 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-US-A77J 
"DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-F2-6879                    TCGA-F2-6880 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-FB-A5VM                    TCGA-FB-A78T 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-FB-A7DR                    TCGA-FZ-5920 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-FZ-5922                    TCGA-FZ-5923 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
  "DEL PEAK  4(2P23.3) MUTATED" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-H8-A6C1                    TCGA-HZ-7289 
  "DEL PEAK  4(2P23.3) MUTATED"   "DEL PEAK  4(2P23.3) MUTATED" 
                   TCGA-HZ-7918                    TCGA-HZ-7919 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-HZ-7922                    TCGA-HZ-7923 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-HZ-7924                    TCGA-HZ-7925 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-HZ-7926                    TCGA-HZ-8001 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-HZ-8002                    TCGA-HZ-8003 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-HZ-8005                    TCGA-HZ-8315 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-HZ-8317                    TCGA-HZ-8519 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-HZ-8636                    TCGA-HZ-8638 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-HZ-A49G                    TCGA-HZ-A49H 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-HZ-A4BH                    TCGA-HZ-A4BK 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-IB-7644                    TCGA-IB-7645 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-IB-7646                    TCGA-IB-7647 
  "DEL PEAK  4(2P23.3) MUTATED" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-IB-7649                    TCGA-IB-7651 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-IB-7652                    TCGA-IB-7885 
  "DEL PEAK  4(2P23.3) MUTATED" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-IB-7886                    TCGA-IB-7887 
"DEL PEAK  4(2P23.3) WILD-TYPE"   "DEL PEAK  4(2P23.3) MUTATED" 
                   TCGA-IB-7888                    TCGA-IB-7889 
  "DEL PEAK  4(2P23.3) MUTATED" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-IB-7890                    TCGA-IB-7891 
  "DEL PEAK  4(2P23.3) MUTATED" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-IB-7893                    TCGA-IB-7897 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-IB-8126                    TCGA-IB-8127 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-IB-A5SO                    TCGA-IB-A5SP 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-IB-A5SQ                    TCGA-IB-A5SS 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-IB-A5ST                    TCGA-IB-A6UG 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-LB-A7SX                    TCGA-OE-A75W 
"DEL PEAK  4(2P23.3) WILD-TYPE"   "DEL PEAK  4(2P23.3) MUTATED" 
                   TCGA-PZ-A5RE                    TCGA-Q3-A5QY 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-US-A779                    TCGA-US-A77E 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-US-A77J 
"DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-F2-6879                    TCGA-F2-6880 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-FB-A5VM                    TCGA-FB-A78T 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-FB-A7DR                    TCGA-FZ-5920 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-FZ-5922                    TCGA-FZ-5923 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
  "DEL PEAK  4(2P23.3) MUTATED" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-H8-A6C1                    TCGA-HZ-7289 
  "DEL PEAK  4(2P23.3) MUTATED"   "DEL PEAK  4(2P23.3) MUTATED" 
                   TCGA-HZ-7918                    TCGA-HZ-7919 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-HZ-7922                    TCGA-HZ-7923 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-HZ-7924                    TCGA-HZ-7925 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-HZ-7926                    TCGA-HZ-8001 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-HZ-8002                    TCGA-HZ-8003 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-HZ-8005                    TCGA-HZ-8315 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-HZ-8317                    TCGA-HZ-8519 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-HZ-8636                    TCGA-HZ-8638 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-HZ-A49G                    TCGA-HZ-A49H 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-HZ-A4BH                    TCGA-HZ-A4BK 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-IB-7644                    TCGA-IB-7645 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-IB-7646                    TCGA-IB-7647 
  "DEL PEAK  4(2P23.3) MUTATED" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-IB-7649                    TCGA-IB-7651 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-IB-7652                    TCGA-IB-7885 
  "DEL PEAK  4(2P23.3) MUTATED" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-IB-7886                    TCGA-IB-7887 
"DEL PEAK  4(2P23.3) WILD-TYPE"   "DEL PEAK  4(2P23.3) MUTATED" 
                   TCGA-IB-7888                    TCGA-IB-7889 
  "DEL PEAK  4(2P23.3) MUTATED" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-IB-7890                    TCGA-IB-7891 
  "DEL PEAK  4(2P23.3) MUTATED" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-IB-7893                    TCGA-IB-7897 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-IB-8126                    TCGA-IB-8127 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-IB-A5SO                    TCGA-IB-A5SP 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-IB-A5SQ                    TCGA-IB-A5SS 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-IB-A5ST                    TCGA-IB-A6UG 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-LB-A7SX                    TCGA-OE-A75W 
"DEL PEAK  4(2P23.3) WILD-TYPE"   "DEL PEAK  4(2P23.3) MUTATED" 
                   TCGA-PZ-A5RE                    TCGA-Q3-A5QY 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-US-A779                    TCGA-US-A77E 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-US-A77J 
"DEL PEAK  4(2P23.3) WILD-TYPE" 
[1] "hr=" "1.4"
D19V2, continuous
                               vv
clus                            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III
  DEL PEAK  4(2P23.3) MUTATED          0        1         3         6         0
  DEL PEAK  4(2P23.3) WILD-TYPE        2        3         8        44         2
                               vv
clus                            STAGE IV
  DEL PEAK  4(2P23.3) MUTATED          0
  DEL PEAK  4(2P23.3) WILD-TYPE        3
D19V3, multiclass
                               vv
clus                            T1+T2 T3+T4
  DEL PEAK  4(2P23.3) MUTATED       1     9
  DEL PEAK  4(2P23.3) WILD-TYPE     6    56
D19V4, multiclass
       clus
vv      DEL PEAK  4(2P23.3) MUTATED DEL PEAK  4(2P23.3) WILD-TYPE
  T1+T2                           1                             6
  T3+T4                           9                            56
D19V5, binary
                               cls
clus                             0  1
  DEL PEAK  4(2P23.3) MUTATED    4  6
  DEL PEAK  4(2P23.3) WILD-TYPE 14 47
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  4(2P23.3) MUTATED      4    6
  DEL PEAK  4(2P23.3) WILD-TYPE   14   47
   clus
vv  DEL PEAK  4(2P23.3) MUTATED DEL PEAK  4(2P23.3) WILD-TYPE
  0                           4                            14
  1                           6                            47
                               vv
clus                            M0 M1 MX
  DEL PEAK  4(2P23.3) MUTATED    7  0  3
  DEL PEAK  4(2P23.3) WILD-TYPE 32  3 27
D19V6, multiclass
    clus
vv   DEL PEAK  4(2P23.3) MUTATED DEL PEAK  4(2P23.3) WILD-TYPE
  M0                           7                            32
  M1                           0                             3
  MX                           3                            27
D19V7, binary
                               cls
clus                             0  1
  DEL PEAK  4(2P23.3) MUTATED    4  6
  DEL PEAK  4(2P23.3) WILD-TYPE 32 30
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  4(2P23.3) MUTATED      4    6
  DEL PEAK  4(2P23.3) WILD-TYPE   32   30
        clus
vv       DEL PEAK  4(2P23.3) MUTATED DEL PEAK  4(2P23.3) WILD-TYPE
  FEMALE                           4                            32
  MALE                             6                            30
                               vv
clus                            PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK  4(2P23.3) MUTATED                                     8
  DEL PEAK  4(2P23.3) WILD-TYPE                                  56
                               vv
clus                            PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK  4(2P23.3) MUTATED                                       2
  DEL PEAK  4(2P23.3) WILD-TYPE                                     3
                               vv
clus                            PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK  4(2P23.3) MUTATED                                                  0
  DEL PEAK  4(2P23.3) WILD-TYPE                                                2
D19V8, multiclass
                                                  clus
vv                                                 DEL PEAK  4(2P23.3) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                        8
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                      2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                           0
                                                  clus
vv                                                 DEL PEAK  4(2P23.3) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                         56
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                        3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                             2
D19V9, continuous
D19V10, continuous
                               vv
clus                            R0 R1 RX
  DEL PEAK  4(2P23.3) MUTATED    5  4  1
  DEL PEAK  4(2P23.3) WILD-TYPE 38 20  1
D19V11, multiclass
    clus
vv   DEL PEAK  4(2P23.3) MUTATED DEL PEAK  4(2P23.3) WILD-TYPE
  R0                           5                            38
  R1                           4                            20
  RX                           1                             1
D19V12, continuous

Clustering(20) Variable = DEL PEAK  5(3P24.1) MUTATION ANALYSIS
D20V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  5(3P24.1) MUTATED    8  6
  DEL PEAK  5(3P24.1) WILD-TYPE 32 23
  DEL PEAK  5(3P24.1) MUTATED DEL PEAK  5(3P24.1) WILD-TYPE 
                           14                            55 
  DEL PEAK  5(3P24.1) MUTATED DEL PEAK  5(3P24.1) WILD-TYPE 
                            6                            23 
$`DEL PEAK  5(3P24.1) MUTATED`
TCGA-F2-A44H TCGA-HZ-7918 TCGA-HZ-7922 TCGA-HZ-7925 TCGA-HZ-8005 TCGA-HZ-A4BK 
       19.27         0.92         0.13        11.87         3.95         1.51 
TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7890 TCGA-IB-8127 
        4.77        21.90         4.04         3.62        19.66        17.16 
TCGA-IB-A5SP TCGA-LB-A7SX 
        9.86         4.18 

$`DEL PEAK  5(3P24.1) WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-FB-A4P5 
       10.98         9.70        11.84         7.10         5.03         0.13 
TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 
       12.66         2.47         0.03         5.46         2.01        36.20 
TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7919 
       20.81        12.89         7.66        13.02         7.89         0.66 
TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 
        0.26        12.13         0.26         0.62         0.79         0.69 
TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G 
        0.92         0.53         0.10         0.16         2.99         0.76 
TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7649 TCGA-IB-7651 
        0.95         6.38        11.41        49.38        15.35        19.82 
TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7891 TCGA-IB-7893 
       15.65        27.98        43.79        15.81        16.04         3.85 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-A5SO TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
       15.98         0.56        10.82         7.20        15.12         0.26 
TCGA-IB-A6UG TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E 
        1.35         3.62         8.12        13.68        16.80        14.14 
TCGA-US-A77J 
       18.67 

  DEL PEAK  5(3P24.1) MUTATED DEL PEAK  5(3P24.1) WILD-TYPE 
                         0.13                          0.03 
  DEL PEAK  5(3P24.1) MUTATED DEL PEAK  5(3P24.1) WILD-TYPE 
                        21.90                         49.38 
  DEL PEAK  5(3P24.1) MUTATED DEL PEAK  5(3P24.1) WILD-TYPE 
                        4.475                         7.660 
[1] "0.1 - 21.9 (4.5)" "0.0 - 49.4 (7.7)"
                   TCGA-F2-6879                    TCGA-F2-6880 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"DEL PEAK  5(3P24.1) WILD-TYPE"   "DEL PEAK  5(3P24.1) MUTATED" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-FB-A5VM                    TCGA-FB-A78T 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-FB-A7DR                    TCGA-FZ-5920 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-FZ-5922                    TCGA-FZ-5923 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-H8-A6C1                    TCGA-HZ-7289 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-HZ-7918                    TCGA-HZ-7919 
  "DEL PEAK  5(3P24.1) MUTATED" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-HZ-7922                    TCGA-HZ-7923 
  "DEL PEAK  5(3P24.1) MUTATED" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-HZ-7924                    TCGA-HZ-7925 
"DEL PEAK  5(3P24.1) WILD-TYPE"   "DEL PEAK  5(3P24.1) MUTATED" 
                   TCGA-HZ-7926                    TCGA-HZ-8001 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-HZ-8002                    TCGA-HZ-8003 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-HZ-8005                    TCGA-HZ-8315 
  "DEL PEAK  5(3P24.1) MUTATED" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-HZ-8317                    TCGA-HZ-8519 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-HZ-8636                    TCGA-HZ-8638 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-HZ-A49G                    TCGA-HZ-A49H 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-HZ-A4BH                    TCGA-HZ-A4BK 
"DEL PEAK  5(3P24.1) WILD-TYPE"   "DEL PEAK  5(3P24.1) MUTATED" 
                   TCGA-IB-7644                    TCGA-IB-7645 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-IB-7646                    TCGA-IB-7647 
  "DEL PEAK  5(3P24.1) MUTATED"   "DEL PEAK  5(3P24.1) MUTATED" 
                   TCGA-IB-7649                    TCGA-IB-7651 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-IB-7652                    TCGA-IB-7885 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-IB-7886                    TCGA-IB-7887 
  "DEL PEAK  5(3P24.1) MUTATED"   "DEL PEAK  5(3P24.1) MUTATED" 
                   TCGA-IB-7888                    TCGA-IB-7889 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-IB-7890                    TCGA-IB-7891 
  "DEL PEAK  5(3P24.1) MUTATED" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-IB-7893                    TCGA-IB-7897 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-IB-8126                    TCGA-IB-8127 
"DEL PEAK  5(3P24.1) WILD-TYPE"   "DEL PEAK  5(3P24.1) MUTATED" 
                   TCGA-IB-A5SO                    TCGA-IB-A5SP 
"DEL PEAK  5(3P24.1) WILD-TYPE"   "DEL PEAK  5(3P24.1) MUTATED" 
                   TCGA-IB-A5SQ                    TCGA-IB-A5SS 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-IB-A5ST                    TCGA-IB-A6UG 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-LB-A7SX                    TCGA-OE-A75W 
  "DEL PEAK  5(3P24.1) MUTATED" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-PZ-A5RE                    TCGA-Q3-A5QY 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-US-A779                    TCGA-US-A77E 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-US-A77J 
"DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-F2-6879                    TCGA-F2-6880 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"DEL PEAK  5(3P24.1) WILD-TYPE"   "DEL PEAK  5(3P24.1) MUTATED" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-FB-A5VM                    TCGA-FB-A78T 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-FB-A7DR                    TCGA-FZ-5920 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-FZ-5922                    TCGA-FZ-5923 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-H8-A6C1                    TCGA-HZ-7289 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-HZ-7918                    TCGA-HZ-7919 
  "DEL PEAK  5(3P24.1) MUTATED" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-HZ-7922                    TCGA-HZ-7923 
  "DEL PEAK  5(3P24.1) MUTATED" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-HZ-7924                    TCGA-HZ-7925 
"DEL PEAK  5(3P24.1) WILD-TYPE"   "DEL PEAK  5(3P24.1) MUTATED" 
                   TCGA-HZ-7926                    TCGA-HZ-8001 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-HZ-8002                    TCGA-HZ-8003 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-HZ-8005                    TCGA-HZ-8315 
  "DEL PEAK  5(3P24.1) MUTATED" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-HZ-8317                    TCGA-HZ-8519 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-HZ-8636                    TCGA-HZ-8638 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-HZ-A49G                    TCGA-HZ-A49H 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-HZ-A4BH                    TCGA-HZ-A4BK 
"DEL PEAK  5(3P24.1) WILD-TYPE"   "DEL PEAK  5(3P24.1) MUTATED" 
                   TCGA-IB-7644                    TCGA-IB-7645 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-IB-7646                    TCGA-IB-7647 
  "DEL PEAK  5(3P24.1) MUTATED"   "DEL PEAK  5(3P24.1) MUTATED" 
                   TCGA-IB-7649                    TCGA-IB-7651 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-IB-7652                    TCGA-IB-7885 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-IB-7886                    TCGA-IB-7887 
  "DEL PEAK  5(3P24.1) MUTATED"   "DEL PEAK  5(3P24.1) MUTATED" 
                   TCGA-IB-7888                    TCGA-IB-7889 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-IB-7890                    TCGA-IB-7891 
  "DEL PEAK  5(3P24.1) MUTATED" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-IB-7893                    TCGA-IB-7897 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-IB-8126                    TCGA-IB-8127 
"DEL PEAK  5(3P24.1) WILD-TYPE"   "DEL PEAK  5(3P24.1) MUTATED" 
                   TCGA-IB-A5SO                    TCGA-IB-A5SP 
"DEL PEAK  5(3P24.1) WILD-TYPE"   "DEL PEAK  5(3P24.1) MUTATED" 
                   TCGA-IB-A5SQ                    TCGA-IB-A5SS 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-IB-A5ST                    TCGA-IB-A6UG 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-LB-A7SX                    TCGA-OE-A75W 
  "DEL PEAK  5(3P24.1) MUTATED" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-PZ-A5RE                    TCGA-Q3-A5QY 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-US-A779                    TCGA-US-A77E 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-US-A77J 
"DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-F2-6879                    TCGA-F2-6880 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"DEL PEAK  5(3P24.1) WILD-TYPE"   "DEL PEAK  5(3P24.1) MUTATED" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-FB-A5VM                    TCGA-FB-A78T 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-FB-A7DR                    TCGA-FZ-5920 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-FZ-5922                    TCGA-FZ-5923 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-H8-A6C1                    TCGA-HZ-7289 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-HZ-7918                    TCGA-HZ-7919 
  "DEL PEAK  5(3P24.1) MUTATED" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-HZ-7922                    TCGA-HZ-7923 
  "DEL PEAK  5(3P24.1) MUTATED" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-HZ-7924                    TCGA-HZ-7925 
"DEL PEAK  5(3P24.1) WILD-TYPE"   "DEL PEAK  5(3P24.1) MUTATED" 
                   TCGA-HZ-7926                    TCGA-HZ-8001 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-HZ-8002                    TCGA-HZ-8003 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-HZ-8005                    TCGA-HZ-8315 
  "DEL PEAK  5(3P24.1) MUTATED" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-HZ-8317                    TCGA-HZ-8519 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-HZ-8636                    TCGA-HZ-8638 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-HZ-A49G                    TCGA-HZ-A49H 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-HZ-A4BH                    TCGA-HZ-A4BK 
"DEL PEAK  5(3P24.1) WILD-TYPE"   "DEL PEAK  5(3P24.1) MUTATED" 
                   TCGA-IB-7644                    TCGA-IB-7645 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-IB-7646                    TCGA-IB-7647 
  "DEL PEAK  5(3P24.1) MUTATED"   "DEL PEAK  5(3P24.1) MUTATED" 
                   TCGA-IB-7649                    TCGA-IB-7651 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-IB-7652                    TCGA-IB-7885 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-IB-7886                    TCGA-IB-7887 
  "DEL PEAK  5(3P24.1) MUTATED"   "DEL PEAK  5(3P24.1) MUTATED" 
                   TCGA-IB-7888                    TCGA-IB-7889 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-IB-7890                    TCGA-IB-7891 
  "DEL PEAK  5(3P24.1) MUTATED" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-IB-7893                    TCGA-IB-7897 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-IB-8126                    TCGA-IB-8127 
"DEL PEAK  5(3P24.1) WILD-TYPE"   "DEL PEAK  5(3P24.1) MUTATED" 
                   TCGA-IB-A5SO                    TCGA-IB-A5SP 
"DEL PEAK  5(3P24.1) WILD-TYPE"   "DEL PEAK  5(3P24.1) MUTATED" 
                   TCGA-IB-A5SQ                    TCGA-IB-A5SS 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-IB-A5ST                    TCGA-IB-A6UG 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-LB-A7SX                    TCGA-OE-A75W 
  "DEL PEAK  5(3P24.1) MUTATED" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-PZ-A5RE                    TCGA-Q3-A5QY 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-US-A779                    TCGA-US-A77E 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-US-A77J 
"DEL PEAK  5(3P24.1) WILD-TYPE" 
[1] "hr=" "1.1"
D20V2, continuous
                               vv
clus                            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III
  DEL PEAK  5(3P24.1) MUTATED          0        1         2        12         0
  DEL PEAK  5(3P24.1) WILD-TYPE        2        3         9        38         2
                               vv
clus                            STAGE IV
  DEL PEAK  5(3P24.1) MUTATED          0
  DEL PEAK  5(3P24.1) WILD-TYPE        3
D20V3, multiclass
                               vv
clus                            T1+T2 T3+T4
  DEL PEAK  5(3P24.1) MUTATED       1    14
  DEL PEAK  5(3P24.1) WILD-TYPE     6    51
D20V4, multiclass
       clus
vv      DEL PEAK  5(3P24.1) MUTATED DEL PEAK  5(3P24.1) WILD-TYPE
  T1+T2                           1                             6
  T3+T4                          14                            51
D20V5, binary
                               cls
clus                             0  1
  DEL PEAK  5(3P24.1) MUTATED    3 12
  DEL PEAK  5(3P24.1) WILD-TYPE 15 41
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  5(3P24.1) MUTATED      3   12
  DEL PEAK  5(3P24.1) WILD-TYPE   15   41
   clus
vv  DEL PEAK  5(3P24.1) MUTATED DEL PEAK  5(3P24.1) WILD-TYPE
  0                           3                            15
  1                          12                            41
                               vv
clus                            M0 M1 MX
  DEL PEAK  5(3P24.1) MUTATED    9  0  6
  DEL PEAK  5(3P24.1) WILD-TYPE 30  3 24
D20V6, multiclass
    clus
vv   DEL PEAK  5(3P24.1) MUTATED DEL PEAK  5(3P24.1) WILD-TYPE
  M0                           9                            30
  M1                           0                             3
  MX                           6                            24
D20V7, binary
                               cls
clus                             0  1
  DEL PEAK  5(3P24.1) MUTATED    5 10
  DEL PEAK  5(3P24.1) WILD-TYPE 31 26
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  5(3P24.1) MUTATED      5   10
  DEL PEAK  5(3P24.1) WILD-TYPE   31   26
        clus
vv       DEL PEAK  5(3P24.1) MUTATED DEL PEAK  5(3P24.1) WILD-TYPE
  FEMALE                           5                            31
  MALE                            10                            26
                               vv
clus                            PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK  5(3P24.1) MUTATED                                    14
  DEL PEAK  5(3P24.1) WILD-TYPE                                  50
                               vv
clus                            PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK  5(3P24.1) MUTATED                                       1
  DEL PEAK  5(3P24.1) WILD-TYPE                                     4
                               vv
clus                            PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK  5(3P24.1) MUTATED                                                  0
  DEL PEAK  5(3P24.1) WILD-TYPE                                                2
D20V8, multiclass
                                                  clus
vv                                                 DEL PEAK  5(3P24.1) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                       14
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                      1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                           0
                                                  clus
vv                                                 DEL PEAK  5(3P24.1) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                         50
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                        4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                             2
D20V9, continuous
D20V10, continuous
                               vv
clus                            R0 R1 RX
  DEL PEAK  5(3P24.1) MUTATED    6  9  0
  DEL PEAK  5(3P24.1) WILD-TYPE 37 15  2
D20V11, multiclass
    clus
vv   DEL PEAK  5(3P24.1) MUTATED DEL PEAK  5(3P24.1) WILD-TYPE
  R0                           6                            37
  R1                           9                            15
  RX                           0                             2
D20V12, continuous

Clustering(21) Variable = DEL PEAK  6(4Q35.2) MUTATION ANALYSIS
D21V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  6(4Q35.2) MUTATED   10  2
  DEL PEAK  6(4Q35.2) WILD-TYPE 30 27
  DEL PEAK  6(4Q35.2) MUTATED DEL PEAK  6(4Q35.2) WILD-TYPE 
                           12                            57 
  DEL PEAK  6(4Q35.2) MUTATED DEL PEAK  6(4Q35.2) WILD-TYPE 
                            2                            27 
$`DEL PEAK  6(4Q35.2) MUTATED`
TCGA-FB-A5VM TCGA-FB-A7DR TCGA-FZ-5920 TCGA-H8-A6C1 TCGA-HZ-7922 TCGA-HZ-7925 
        2.47         5.46         2.01        13.02         0.13        11.87 
TCGA-HZ-A49G TCGA-HZ-A4BH TCGA-IB-7652 TCGA-IB-7886 TCGA-IB-A5SP TCGA-OE-A75W 
        0.76         6.38        15.65         4.04         9.86         3.62 

$`DEL PEAK  6(4Q35.2) WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A545 TCGA-FB-A78T TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 
        0.13        12.66         0.03        36.20        20.81        12.89 
TCGA-H6-A45N TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7923 TCGA-HZ-7924 
        7.66         7.89         0.92         0.66         0.26        12.13 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 
        0.26         0.62         0.79         0.69         3.95         0.92 
TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49H TCGA-HZ-A4BK 
        0.53         0.10         0.16         2.99         0.95         1.51 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 
       11.41        49.38         4.77        21.90        15.35        19.82 
TCGA-IB-7885 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
       27.98         3.62        43.79        15.81        19.66        16.04 
TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SQ 
        3.85        15.98         0.56        17.16        10.82         7.20 
TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-PZ-A5RE TCGA-Q3-A5QY 
       15.12         0.26         1.35         4.18         8.12        13.68 
TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       16.80        14.14        18.67 

  DEL PEAK  6(4Q35.2) MUTATED DEL PEAK  6(4Q35.2) WILD-TYPE 
                         0.13                          0.03 
  DEL PEAK  6(4Q35.2) MUTATED DEL PEAK  6(4Q35.2) WILD-TYPE 
                        15.65                         49.38 
  DEL PEAK  6(4Q35.2) MUTATED DEL PEAK  6(4Q35.2) WILD-TYPE 
                         4.75                          7.89 
[1] "0.1 - 15.7 (4.8)" "0.0 - 49.4 (7.9)"
                   TCGA-F2-6879                    TCGA-F2-6880 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-FB-A5VM                    TCGA-FB-A78T 
  "DEL PEAK  6(4Q35.2) MUTATED" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-FB-A7DR                    TCGA-FZ-5920 
  "DEL PEAK  6(4Q35.2) MUTATED"   "DEL PEAK  6(4Q35.2) MUTATED" 
                   TCGA-FZ-5922                    TCGA-FZ-5923 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-H8-A6C1                    TCGA-HZ-7289 
  "DEL PEAK  6(4Q35.2) MUTATED" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-HZ-7918                    TCGA-HZ-7919 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-HZ-7922                    TCGA-HZ-7923 
  "DEL PEAK  6(4Q35.2) MUTATED" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-HZ-7924                    TCGA-HZ-7925 
"DEL PEAK  6(4Q35.2) WILD-TYPE"   "DEL PEAK  6(4Q35.2) MUTATED" 
                   TCGA-HZ-7926                    TCGA-HZ-8001 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-HZ-8002                    TCGA-HZ-8003 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-HZ-8005                    TCGA-HZ-8315 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-HZ-8317                    TCGA-HZ-8519 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-HZ-8636                    TCGA-HZ-8638 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-HZ-A49G                    TCGA-HZ-A49H 
  "DEL PEAK  6(4Q35.2) MUTATED" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-HZ-A4BH                    TCGA-HZ-A4BK 
  "DEL PEAK  6(4Q35.2) MUTATED" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-IB-7644                    TCGA-IB-7645 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-IB-7646                    TCGA-IB-7647 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-IB-7649                    TCGA-IB-7651 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-IB-7652                    TCGA-IB-7885 
  "DEL PEAK  6(4Q35.2) MUTATED" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-IB-7886                    TCGA-IB-7887 
  "DEL PEAK  6(4Q35.2) MUTATED" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-IB-7888                    TCGA-IB-7889 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-IB-7890                    TCGA-IB-7891 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-IB-7893                    TCGA-IB-7897 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-IB-8126                    TCGA-IB-8127 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-IB-A5SO                    TCGA-IB-A5SP 
"DEL PEAK  6(4Q35.2) WILD-TYPE"   "DEL PEAK  6(4Q35.2) MUTATED" 
                   TCGA-IB-A5SQ                    TCGA-IB-A5SS 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-IB-A5ST                    TCGA-IB-A6UG 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-LB-A7SX                    TCGA-OE-A75W 
"DEL PEAK  6(4Q35.2) WILD-TYPE"   "DEL PEAK  6(4Q35.2) MUTATED" 
                   TCGA-PZ-A5RE                    TCGA-Q3-A5QY 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-US-A779                    TCGA-US-A77E 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-US-A77J 
"DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-F2-6879                    TCGA-F2-6880 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-FB-A5VM                    TCGA-FB-A78T 
  "DEL PEAK  6(4Q35.2) MUTATED" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-FB-A7DR                    TCGA-FZ-5920 
  "DEL PEAK  6(4Q35.2) MUTATED"   "DEL PEAK  6(4Q35.2) MUTATED" 
                   TCGA-FZ-5922                    TCGA-FZ-5923 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-H8-A6C1                    TCGA-HZ-7289 
  "DEL PEAK  6(4Q35.2) MUTATED" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-HZ-7918                    TCGA-HZ-7919 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-HZ-7922                    TCGA-HZ-7923 
  "DEL PEAK  6(4Q35.2) MUTATED" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-HZ-7924                    TCGA-HZ-7925 
"DEL PEAK  6(4Q35.2) WILD-TYPE"   "DEL PEAK  6(4Q35.2) MUTATED" 
                   TCGA-HZ-7926                    TCGA-HZ-8001 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-HZ-8002                    TCGA-HZ-8003 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-HZ-8005                    TCGA-HZ-8315 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-HZ-8317                    TCGA-HZ-8519 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-HZ-8636                    TCGA-HZ-8638 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-HZ-A49G                    TCGA-HZ-A49H 
  "DEL PEAK  6(4Q35.2) MUTATED" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-HZ-A4BH                    TCGA-HZ-A4BK 
  "DEL PEAK  6(4Q35.2) MUTATED" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-IB-7644                    TCGA-IB-7645 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-IB-7646                    TCGA-IB-7647 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-IB-7649                    TCGA-IB-7651 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-IB-7652                    TCGA-IB-7885 
  "DEL PEAK  6(4Q35.2) MUTATED" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-IB-7886                    TCGA-IB-7887 
  "DEL PEAK  6(4Q35.2) MUTATED" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-IB-7888                    TCGA-IB-7889 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-IB-7890                    TCGA-IB-7891 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-IB-7893                    TCGA-IB-7897 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-IB-8126                    TCGA-IB-8127 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-IB-A5SO                    TCGA-IB-A5SP 
"DEL PEAK  6(4Q35.2) WILD-TYPE"   "DEL PEAK  6(4Q35.2) MUTATED" 
                   TCGA-IB-A5SQ                    TCGA-IB-A5SS 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-IB-A5ST                    TCGA-IB-A6UG 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-LB-A7SX                    TCGA-OE-A75W 
"DEL PEAK  6(4Q35.2) WILD-TYPE"   "DEL PEAK  6(4Q35.2) MUTATED" 
                   TCGA-PZ-A5RE                    TCGA-Q3-A5QY 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-US-A779                    TCGA-US-A77E 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-US-A77J 
"DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-F2-6879                    TCGA-F2-6880 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-FB-A5VM                    TCGA-FB-A78T 
  "DEL PEAK  6(4Q35.2) MUTATED" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-FB-A7DR                    TCGA-FZ-5920 
  "DEL PEAK  6(4Q35.2) MUTATED"   "DEL PEAK  6(4Q35.2) MUTATED" 
                   TCGA-FZ-5922                    TCGA-FZ-5923 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-H8-A6C1                    TCGA-HZ-7289 
  "DEL PEAK  6(4Q35.2) MUTATED" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-HZ-7918                    TCGA-HZ-7919 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-HZ-7922                    TCGA-HZ-7923 
  "DEL PEAK  6(4Q35.2) MUTATED" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-HZ-7924                    TCGA-HZ-7925 
"DEL PEAK  6(4Q35.2) WILD-TYPE"   "DEL PEAK  6(4Q35.2) MUTATED" 
                   TCGA-HZ-7926                    TCGA-HZ-8001 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-HZ-8002                    TCGA-HZ-8003 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-HZ-8005                    TCGA-HZ-8315 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-HZ-8317                    TCGA-HZ-8519 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-HZ-8636                    TCGA-HZ-8638 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-HZ-A49G                    TCGA-HZ-A49H 
  "DEL PEAK  6(4Q35.2) MUTATED" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-HZ-A4BH                    TCGA-HZ-A4BK 
  "DEL PEAK  6(4Q35.2) MUTATED" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-IB-7644                    TCGA-IB-7645 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-IB-7646                    TCGA-IB-7647 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-IB-7649                    TCGA-IB-7651 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-IB-7652                    TCGA-IB-7885 
  "DEL PEAK  6(4Q35.2) MUTATED" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-IB-7886                    TCGA-IB-7887 
  "DEL PEAK  6(4Q35.2) MUTATED" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-IB-7888                    TCGA-IB-7889 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-IB-7890                    TCGA-IB-7891 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-IB-7893                    TCGA-IB-7897 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-IB-8126                    TCGA-IB-8127 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-IB-A5SO                    TCGA-IB-A5SP 
"DEL PEAK  6(4Q35.2) WILD-TYPE"   "DEL PEAK  6(4Q35.2) MUTATED" 
                   TCGA-IB-A5SQ                    TCGA-IB-A5SS 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-IB-A5ST                    TCGA-IB-A6UG 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-LB-A7SX                    TCGA-OE-A75W 
"DEL PEAK  6(4Q35.2) WILD-TYPE"   "DEL PEAK  6(4Q35.2) MUTATED" 
                   TCGA-PZ-A5RE                    TCGA-Q3-A5QY 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-US-A779                    TCGA-US-A77E 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-US-A77J 
"DEL PEAK  6(4Q35.2) WILD-TYPE" 
[1] "hr=" "1.2"
D21V2, continuous
                               vv
clus                            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III
  DEL PEAK  6(4Q35.2) MUTATED          0        1         4         9         0
  DEL PEAK  6(4Q35.2) WILD-TYPE        2        3         7        41         2
                               vv
clus                            STAGE IV
  DEL PEAK  6(4Q35.2) MUTATED          0
  DEL PEAK  6(4Q35.2) WILD-TYPE        3
D21V3, multiclass
                               vv
clus                            T1+T2 T3+T4
  DEL PEAK  6(4Q35.2) MUTATED       2    12
  DEL PEAK  6(4Q35.2) WILD-TYPE     5    53
D21V4, multiclass
       clus
vv      DEL PEAK  6(4Q35.2) MUTATED DEL PEAK  6(4Q35.2) WILD-TYPE
  T1+T2                           2                             5
  T3+T4                          12                            53
D21V5, binary
                               cls
clus                             0  1
  DEL PEAK  6(4Q35.2) MUTATED    4  9
  DEL PEAK  6(4Q35.2) WILD-TYPE 14 44
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  6(4Q35.2) MUTATED      4    9
  DEL PEAK  6(4Q35.2) WILD-TYPE   14   44
   clus
vv  DEL PEAK  6(4Q35.2) MUTATED DEL PEAK  6(4Q35.2) WILD-TYPE
  0                           4                            14
  1                           9                            44
                               vv
clus                            M0 M1 MX
  DEL PEAK  6(4Q35.2) MUTATED    7  0  7
  DEL PEAK  6(4Q35.2) WILD-TYPE 32  3 23
D21V6, multiclass
    clus
vv   DEL PEAK  6(4Q35.2) MUTATED DEL PEAK  6(4Q35.2) WILD-TYPE
  M0                           7                            32
  M1                           0                             3
  MX                           7                            23
D21V7, binary
                               cls
clus                             0  1
  DEL PEAK  6(4Q35.2) MUTATED    4 10
  DEL PEAK  6(4Q35.2) WILD-TYPE 32 26
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  6(4Q35.2) MUTATED      4   10
  DEL PEAK  6(4Q35.2) WILD-TYPE   32   26
        clus
vv       DEL PEAK  6(4Q35.2) MUTATED DEL PEAK  6(4Q35.2) WILD-TYPE
  FEMALE                           4                            32
  MALE                            10                            26
                               vv
clus                            PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK  6(4Q35.2) MUTATED                                    12
  DEL PEAK  6(4Q35.2) WILD-TYPE                                  52
                               vv
clus                            PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK  6(4Q35.2) MUTATED                                       1
  DEL PEAK  6(4Q35.2) WILD-TYPE                                     4
                               vv
clus                            PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK  6(4Q35.2) MUTATED                                                  1
  DEL PEAK  6(4Q35.2) WILD-TYPE                                                1
D21V8, multiclass
                                                  clus
vv                                                 DEL PEAK  6(4Q35.2) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                       12
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                      1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                           1
                                                  clus
vv                                                 DEL PEAK  6(4Q35.2) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                         52
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                        4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                             1
D21V9, continuous
D21V10, continuous
                               vv
clus                            R0 R1 RX
  DEL PEAK  6(4Q35.2) MUTATED    8  6  0
  DEL PEAK  6(4Q35.2) WILD-TYPE 35 18  2
D21V11, multiclass
    clus
vv   DEL PEAK  6(4Q35.2) MUTATED DEL PEAK  6(4Q35.2) WILD-TYPE
  R0                           8                            35
  R1                           6                            18
  RX                           0                             2
D21V12, continuous

Clustering(22) Variable = DEL PEAK  7(5Q14.2) MUTATION ANALYSIS
D22V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  7(5Q14.2) MUTATED    9  4
  DEL PEAK  7(5Q14.2) WILD-TYPE 31 25
  DEL PEAK  7(5Q14.2) MUTATED DEL PEAK  7(5Q14.2) WILD-TYPE 
                           13                            56 
  DEL PEAK  7(5Q14.2) MUTATED DEL PEAK  7(5Q14.2) WILD-TYPE 
                            4                            25 
$`DEL PEAK  7(5Q14.2) MUTATED`
TCGA-FB-A545 TCGA-FB-A5VM TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7922 TCGA-HZ-8005 
       12.66         2.47         7.89         0.92         0.13         3.95 
TCGA-IB-7652 TCGA-IB-7893 TCGA-IB-8127 TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
       15.65         3.85        17.16         1.35         4.18         3.62 
TCGA-US-A779 
       16.80 

$`DEL PEAK  7(5Q14.2) WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 
        0.13         0.03         5.46         2.01        36.20        20.81 
TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7919 TCGA-HZ-7923 TCGA-HZ-7924 
       12.89         7.66        13.02         0.66         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8315 
       11.87         0.26         0.62         0.79         0.69         0.92 
TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H 
        0.53         0.10         0.16         2.99         0.76         0.95 
TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 
        6.38         1.51        11.41        49.38         4.77        21.90 
TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 
       15.35        19.82        27.98         4.04         3.62        43.79 
TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-A5SO 
       15.81        19.66        16.04        15.98         0.56        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-PZ-A5RE TCGA-Q3-A5QY 
        9.86         7.20        15.12         0.26         8.12        13.68 
TCGA-US-A77E TCGA-US-A77J 
       14.14        18.67 

  DEL PEAK  7(5Q14.2) MUTATED DEL PEAK  7(5Q14.2) WILD-TYPE 
                         0.13                          0.03 
  DEL PEAK  7(5Q14.2) MUTATED DEL PEAK  7(5Q14.2) WILD-TYPE 
                        17.16                         49.38 
  DEL PEAK  7(5Q14.2) MUTATED DEL PEAK  7(5Q14.2) WILD-TYPE 
                         3.95                          7.89 
[1] "0.1 - 17.2 (4.0)" "0.0 - 49.4 (7.9)"
                   TCGA-F2-6879                    TCGA-F2-6880 
"DEL PEAK  7(5Q14.2) WILD-TYPE" "DEL PEAK  7(5Q14.2) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"DEL PEAK  7(5Q14.2) WILD-TYPE" "DEL PEAK  7(5Q14.2) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"DEL PEAK  7(5Q14.2) WILD-TYPE" "DEL PEAK  7(5Q14.2) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"DEL PEAK  7(5Q14.2) WILD-TYPE"   "DEL PEAK  7(5Q14.2) MUTATED" 
                   TCGA-FB-A5VM                    TCGA-FB-A78T 
  "DEL PEAK  7(5Q14.2) MUTATED" "DEL PEAK  7(5Q14.2) WILD-TYPE" 
                   TCGA-FB-A7DR                    TCGA-FZ-5920 
"DEL PEAK  7(5Q14.2) WILD-TYPE" "DEL PEAK  7(5Q14.2) WILD-TYPE" 
                   TCGA-FZ-5922                    TCGA-FZ-5923 
"DEL PEAK  7(5Q14.2) WILD-TYPE" "DEL PEAK  7(5Q14.2) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
"DEL PEAK  7(5Q14.2) WILD-TYPE" "DEL PEAK  7(5Q14.2) WILD-TYPE" 
                   TCGA-H8-A6C1                    TCGA-HZ-7289 
"DEL PEAK  7(5Q14.2) WILD-TYPE"   "DEL PEAK  7(5Q14.2) MUTATED" 
                   TCGA-HZ-7918                    TCGA-HZ-7919 
  "DEL PEAK  7(5Q14.2) MUTATED" "DEL PEAK  7(5Q14.2) WILD-TYPE" 
                   TCGA-HZ-7922                    TCGA-HZ-7923 
  "DEL PEAK  7(5Q14.2) MUTATED" "DEL PEAK  7(5Q14.2) WILD-TYPE" 
                   TCGA-HZ-7924                    TCGA-HZ-7925 
"DEL PEAK  7(5Q14.2) WILD-TYPE" "DEL PEAK  7(5Q14.2) WILD-TYPE" 
                   TCGA-HZ-7926                    TCGA-HZ-8001 
"DEL PEAK  7(5Q14.2) WILD-TYPE" "DEL PEAK  7(5Q14.2) WILD-TYPE" 
                   TCGA-HZ-8002                    TCGA-HZ-8003 
"DEL PEAK  7(5Q14.2) WILD-TYPE" "DEL PEAK  7(5Q14.2) WILD-TYPE" 
                   TCGA-HZ-8005                    TCGA-HZ-8315 
  "DEL PEAK  7(5Q14.2) MUTATED" "DEL PEAK  7(5Q14.2) WILD-TYPE" 
                   TCGA-HZ-8317                    TCGA-HZ-8519 
"DEL PEAK  7(5Q14.2) WILD-TYPE" "DEL PEAK  7(5Q14.2) WILD-TYPE" 
                   TCGA-HZ-8636                    TCGA-HZ-8638 
"DEL PEAK  7(5Q14.2) WILD-TYPE" "DEL PEAK  7(5Q14.2) WILD-TYPE" 
                   TCGA-HZ-A49G                    TCGA-HZ-A49H 
"DEL PEAK  7(5Q14.2) WILD-TYPE" "DEL PEAK  7(5Q14.2) WILD-TYPE" 
                   TCGA-HZ-A4BH                    TCGA-HZ-A4BK 
"DEL PEAK  7(5Q14.2) WILD-TYPE" "DEL PEAK  7(5Q14.2) WILD-TYPE" 
                   TCGA-IB-7644                    TCGA-IB-7645 
"DEL PEAK  7(5Q14.2) WILD-TYPE" "DEL PEAK  7(5Q14.2) WILD-TYPE" 
                   TCGA-IB-7646                    TCGA-IB-7647 
"DEL PEAK  7(5Q14.2) WILD-TYPE" "DEL PEAK  7(5Q14.2) WILD-TYPE" 
                   TCGA-IB-7649                    TCGA-IB-7651 
"DEL PEAK  7(5Q14.2) WILD-TYPE" "DEL PEAK  7(5Q14.2) WILD-TYPE" 
                   TCGA-IB-7652                    TCGA-IB-7885 
  "DEL PEAK  7(5Q14.2) MUTATED" "DEL PEAK  7(5Q14.2) WILD-TYPE" 
                   TCGA-IB-7886                    TCGA-IB-7887 
"DEL PEAK  7(5Q14.2) WILD-TYPE" "DEL PEAK  7(5Q14.2) WILD-TYPE" 
                   TCGA-IB-7888                    TCGA-IB-7889 
"DEL PEAK  7(5Q14.2) WILD-TYPE" "DEL PEAK  7(5Q14.2) WILD-TYPE" 
                   TCGA-IB-7890                    TCGA-IB-7891 
"DEL PEAK  7(5Q14.2) WILD-TYPE" "DEL PEAK  7(5Q14.2) WILD-TYPE" 
                   TCGA-IB-7893                    TCGA-IB-7897 
  "DEL PEAK  7(5Q14.2) MUTATED" "DEL PEAK  7(5Q14.2) WILD-TYPE" 
                   TCGA-IB-8126                    TCGA-IB-8127 
"DEL PEAK  7(5Q14.2) WILD-TYPE"   "DEL PEAK  7(5Q14.2) MUTATED" 
                   TCGA-IB-A5SO                    TCGA-IB-A5SP 
"DEL PEAK  7(5Q14.2) WILD-TYPE" "DEL PEAK  7(5Q14.2) WILD-TYPE" 
                   TCGA-IB-A5SQ                    TCGA-IB-A5SS 
"DEL PEAK  7(5Q14.2) WILD-TYPE" "DEL PEAK  7(5Q14.2) WILD-TYPE" 
                   TCGA-IB-A5ST                    TCGA-IB-A6UG 
"DEL PEAK  7(5Q14.2) WILD-TYPE"   "DEL PEAK  7(5Q14.2) MUTATED" 
                   TCGA-LB-A7SX                    TCGA-OE-A75W 
  "DEL PEAK  7(5Q14.2) MUTATED"   "DEL PEAK  7(5Q14.2) MUTATED" 
                   TCGA-PZ-A5RE                    TCGA-Q3-A5QY 
"DEL PEAK  7(5Q14.2) WILD-TYPE" "DEL PEAK  7(5Q14.2) WILD-TYPE" 
                   TCGA-US-A779                    TCGA-US-A77E 
  "DEL PEAK  7(5Q14.2) MUTATED" "DEL PEAK  7(5Q14.2) WILD-TYPE" 
                   TCGA-US-A77J 
"DEL PEAK  7(5Q14.2) WILD-TYPE" 
                   TCGA-F2-6879                    TCGA-F2-6880 
"DEL PEAK  7(5Q14.2) WILD-TYPE" "DEL PEAK  7(5Q14.2) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"DEL PEAK  7(5Q14.2) WILD-TYPE" "DEL PEAK  7(5Q14.2) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"DEL PEAK  7(5Q14.2) WILD-TYPE" "DEL PEAK  7(5Q14.2) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"DEL PEAK  7(5Q14.2) WILD-TYPE"   "DEL PEAK  7(5Q14.2) MUTATED" 
                   TCGA-FB-A5VM                    TCGA-FB-A78T 
  "DEL PEAK  7(5Q14.2) MUTATED" "DEL PEAK  7(5Q14.2) WILD-TYPE" 
                   TCGA-FB-A7DR                    TCGA-FZ-5920 
"DEL PEAK  7(5Q14.2) WILD-TYPE" "DEL PEAK  7(5Q14.2) WILD-TYPE" 
                   TCGA-FZ-5922                    TCGA-FZ-5923 
"DEL PEAK  7(5Q14.2) WILD-TYPE" "DEL PEAK  7(5Q14.2) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
"DEL PEAK  7(5Q14.2) WILD-TYPE" "DEL PEAK  7(5Q14.2) WILD-TYPE" 
                   TCGA-H8-A6C1                    TCGA-HZ-7289 
"DEL PEAK  7(5Q14.2) WILD-TYPE"   "DEL PEAK  7(5Q14.2) MUTATED" 
                   TCGA-HZ-7918                    TCGA-HZ-7919 
  "DEL PEAK  7(5Q14.2) MUTATED" "DEL PEAK  7(5Q14.2) WILD-TYPE" 
                   TCGA-HZ-7922                    TCGA-HZ-7923 
  "DEL PEAK  7(5Q14.2) MUTATED" "DEL PEAK  7(5Q14.2) WILD-TYPE" 
                   TCGA-HZ-7924                    TCGA-HZ-7925 
"DEL PEAK  7(5Q14.2) WILD-TYPE" "DEL PEAK  7(5Q14.2) WILD-TYPE" 
                   TCGA-HZ-7926                    TCGA-HZ-8001 
"DEL PEAK  7(5Q14.2) WILD-TYPE" "DEL PEAK  7(5Q14.2) WILD-TYPE" 
                   TCGA-HZ-8002                    TCGA-HZ-8003 
"DEL PEAK  7(5Q14.2) WILD-TYPE" "DEL PEAK  7(5Q14.2) WILD-TYPE" 
                   TCGA-HZ-8005                    TCGA-HZ-8315 
  "DEL PEAK  7(5Q14.2) MUTATED" "DEL PEAK  7(5Q14.2) WILD-TYPE" 
                   TCGA-HZ-8317                    TCGA-HZ-8519 
"DEL PEAK  7(5Q14.2) WILD-TYPE" "DEL PEAK  7(5Q14.2) WILD-TYPE" 
                   TCGA-HZ-8636                    TCGA-HZ-8638 
"DEL PEAK  7(5Q14.2) WILD-TYPE" "DEL PEAK  7(5Q14.2) WILD-TYPE" 
                   TCGA-HZ-A49G                    TCGA-HZ-A49H 
"DEL PEAK  7(5Q14.2) WILD-TYPE" "DEL PEAK  7(5Q14.2) WILD-TYPE" 
                   TCGA-HZ-A4BH                    TCGA-HZ-A4BK 
"DEL PEAK  7(5Q14.2) WILD-TYPE" "DEL PEAK  7(5Q14.2) WILD-TYPE" 
                   TCGA-IB-7644                    TCGA-IB-7645 
"DEL PEAK  7(5Q14.2) WILD-TYPE" "DEL PEAK  7(5Q14.2) WILD-TYPE" 
                   TCGA-IB-7646                    TCGA-IB-7647 
"DEL PEAK  7(5Q14.2) WILD-TYPE" "DEL PEAK  7(5Q14.2) WILD-TYPE" 
                   TCGA-IB-7649                    TCGA-IB-7651 
"DEL PEAK  7(5Q14.2) WILD-TYPE" "DEL PEAK  7(5Q14.2) WILD-TYPE" 
                   TCGA-IB-7652                    TCGA-IB-7885 
  "DEL PEAK  7(5Q14.2) MUTATED" "DEL PEAK  7(5Q14.2) WILD-TYPE" 
                   TCGA-IB-7886                    TCGA-IB-7887 
"DEL PEAK  7(5Q14.2) WILD-TYPE" "DEL PEAK  7(5Q14.2) WILD-TYPE" 
                   TCGA-IB-7888                    TCGA-IB-7889 
"DEL PEAK  7(5Q14.2) WILD-TYPE" "DEL PEAK  7(5Q14.2) WILD-TYPE" 
                   TCGA-IB-7890                    TCGA-IB-7891 
"DEL PEAK  7(5Q14.2) WILD-TYPE" "DEL PEAK  7(5Q14.2) WILD-TYPE" 
                   TCGA-IB-7893                    TCGA-IB-7897 
  "DEL PEAK  7(5Q14.2) MUTATED" "DEL PEAK  7(5Q14.2) WILD-TYPE" 
                   TCGA-IB-8126                    TCGA-IB-8127 
"DEL PEAK  7(5Q14.2) WILD-TYPE"   "DEL PEAK  7(5Q14.2) MUTATED" 
                   TCGA-IB-A5SO                    TCGA-IB-A5SP 
"DEL PEAK  7(5Q14.2) WILD-TYPE" "DEL PEAK  7(5Q14.2) WILD-TYPE" 
                   TCGA-IB-A5SQ                    TCGA-IB-A5SS 
"DEL PEAK  7(5Q14.2) WILD-TYPE" "DEL PEAK  7(5Q14.2) WILD-TYPE" 
                   TCGA-IB-A5ST                    TCGA-IB-A6UG 
"DEL PEAK  7(5Q14.2) WILD-TYPE"   "DEL PEAK  7(5Q14.2) MUTATED" 
                   TCGA-LB-A7SX                    TCGA-OE-A75W 
  "DEL PEAK  7(5Q14.2) MUTATED"   "DEL PEAK  7(5Q14.2) MUTATED" 
                   TCGA-PZ-A5RE                    TCGA-Q3-A5QY 
"DEL PEAK  7(5Q14.2) WILD-TYPE" "DEL PEAK  7(5Q14.2) WILD-TYPE" 
                   TCGA-US-A779                    TCGA-US-A77E 
  "DEL PEAK  7(5Q14.2) MUTATED" "DEL PEAK  7(5Q14.2) WILD-TYPE" 
                   TCGA-US-A77J 
"DEL PEAK  7(5Q14.2) WILD-TYPE" 
                   TCGA-F2-6879                    TCGA-F2-6880 
"DEL PEAK  7(5Q14.2) WILD-TYPE" "DEL PEAK  7(5Q14.2) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"DEL PEAK  7(5Q14.2) WILD-TYPE" "DEL PEAK  7(5Q14.2) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"DEL PEAK  7(5Q14.2) WILD-TYPE" "DEL PEAK  7(5Q14.2) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"DEL PEAK  7(5Q14.2) WILD-TYPE"   "DEL PEAK  7(5Q14.2) MUTATED" 
                   TCGA-FB-A5VM                    TCGA-FB-A78T 
  "DEL PEAK  7(5Q14.2) MUTATED" "DEL PEAK  7(5Q14.2) WILD-TYPE" 
                   TCGA-FB-A7DR                    TCGA-FZ-5920 
"DEL PEAK  7(5Q14.2) WILD-TYPE" "DEL PEAK  7(5Q14.2) WILD-TYPE" 
                   TCGA-FZ-5922                    TCGA-FZ-5923 
"DEL PEAK  7(5Q14.2) WILD-TYPE" "DEL PEAK  7(5Q14.2) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
"DEL PEAK  7(5Q14.2) WILD-TYPE" "DEL PEAK  7(5Q14.2) WILD-TYPE" 
                   TCGA-H8-A6C1                    TCGA-HZ-7289 
"DEL PEAK  7(5Q14.2) WILD-TYPE"   "DEL PEAK  7(5Q14.2) MUTATED" 
                   TCGA-HZ-7918                    TCGA-HZ-7919 
  "DEL PEAK  7(5Q14.2) MUTATED" "DEL PEAK  7(5Q14.2) WILD-TYPE" 
                   TCGA-HZ-7922                    TCGA-HZ-7923 
  "DEL PEAK  7(5Q14.2) MUTATED" "DEL PEAK  7(5Q14.2) WILD-TYPE" 
                   TCGA-HZ-7924                    TCGA-HZ-7925 
"DEL PEAK  7(5Q14.2) WILD-TYPE" "DEL PEAK  7(5Q14.2) WILD-TYPE" 
                   TCGA-HZ-7926                    TCGA-HZ-8001 
"DEL PEAK  7(5Q14.2) WILD-TYPE" "DEL PEAK  7(5Q14.2) WILD-TYPE" 
                   TCGA-HZ-8002                    TCGA-HZ-8003 
"DEL PEAK  7(5Q14.2) WILD-TYPE" "DEL PEAK  7(5Q14.2) WILD-TYPE" 
                   TCGA-HZ-8005                    TCGA-HZ-8315 
  "DEL PEAK  7(5Q14.2) MUTATED" "DEL PEAK  7(5Q14.2) WILD-TYPE" 
                   TCGA-HZ-8317                    TCGA-HZ-8519 
"DEL PEAK  7(5Q14.2) WILD-TYPE" "DEL PEAK  7(5Q14.2) WILD-TYPE" 
                   TCGA-HZ-8636                    TCGA-HZ-8638 
"DEL PEAK  7(5Q14.2) WILD-TYPE" "DEL PEAK  7(5Q14.2) WILD-TYPE" 
                   TCGA-HZ-A49G                    TCGA-HZ-A49H 
"DEL PEAK  7(5Q14.2) WILD-TYPE" "DEL PEAK  7(5Q14.2) WILD-TYPE" 
                   TCGA-HZ-A4BH                    TCGA-HZ-A4BK 
"DEL PEAK  7(5Q14.2) WILD-TYPE" "DEL PEAK  7(5Q14.2) WILD-TYPE" 
                   TCGA-IB-7644                    TCGA-IB-7645 
"DEL PEAK  7(5Q14.2) WILD-TYPE" "DEL PEAK  7(5Q14.2) WILD-TYPE" 
                   TCGA-IB-7646                    TCGA-IB-7647 
"DEL PEAK  7(5Q14.2) WILD-TYPE" "DEL PEAK  7(5Q14.2) WILD-TYPE" 
                   TCGA-IB-7649                    TCGA-IB-7651 
"DEL PEAK  7(5Q14.2) WILD-TYPE" "DEL PEAK  7(5Q14.2) WILD-TYPE" 
                   TCGA-IB-7652                    TCGA-IB-7885 
  "DEL PEAK  7(5Q14.2) MUTATED" "DEL PEAK  7(5Q14.2) WILD-TYPE" 
                   TCGA-IB-7886                    TCGA-IB-7887 
"DEL PEAK  7(5Q14.2) WILD-TYPE" "DEL PEAK  7(5Q14.2) WILD-TYPE" 
                   TCGA-IB-7888                    TCGA-IB-7889 
"DEL PEAK  7(5Q14.2) WILD-TYPE" "DEL PEAK  7(5Q14.2) WILD-TYPE" 
                   TCGA-IB-7890                    TCGA-IB-7891 
"DEL PEAK  7(5Q14.2) WILD-TYPE" "DEL PEAK  7(5Q14.2) WILD-TYPE" 
                   TCGA-IB-7893                    TCGA-IB-7897 
  "DEL PEAK  7(5Q14.2) MUTATED" "DEL PEAK  7(5Q14.2) WILD-TYPE" 
                   TCGA-IB-8126                    TCGA-IB-8127 
"DEL PEAK  7(5Q14.2) WILD-TYPE"   "DEL PEAK  7(5Q14.2) MUTATED" 
                   TCGA-IB-A5SO                    TCGA-IB-A5SP 
"DEL PEAK  7(5Q14.2) WILD-TYPE" "DEL PEAK  7(5Q14.2) WILD-TYPE" 
                   TCGA-IB-A5SQ                    TCGA-IB-A5SS 
"DEL PEAK  7(5Q14.2) WILD-TYPE" "DEL PEAK  7(5Q14.2) WILD-TYPE" 
                   TCGA-IB-A5ST                    TCGA-IB-A6UG 
"DEL PEAK  7(5Q14.2) WILD-TYPE"   "DEL PEAK  7(5Q14.2) MUTATED" 
                   TCGA-LB-A7SX                    TCGA-OE-A75W 
  "DEL PEAK  7(5Q14.2) MUTATED"   "DEL PEAK  7(5Q14.2) MUTATED" 
                   TCGA-PZ-A5RE                    TCGA-Q3-A5QY 
"DEL PEAK  7(5Q14.2) WILD-TYPE" "DEL PEAK  7(5Q14.2) WILD-TYPE" 
                   TCGA-US-A779                    TCGA-US-A77E 
  "DEL PEAK  7(5Q14.2) MUTATED" "DEL PEAK  7(5Q14.2) WILD-TYPE" 
                   TCGA-US-A77J 
"DEL PEAK  7(5Q14.2) WILD-TYPE" 
[1] "hr=" "1.2"
D22V2, continuous
                               vv
clus                            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III
  DEL PEAK  7(5Q14.2) MUTATED          0        1         2        11         0
  DEL PEAK  7(5Q14.2) WILD-TYPE        2        3         9        39         2
                               vv
clus                            STAGE IV
  DEL PEAK  7(5Q14.2) MUTATED          0
  DEL PEAK  7(5Q14.2) WILD-TYPE        3
D22V3, multiclass
                               vv
clus                            T1+T2 T3+T4
  DEL PEAK  7(5Q14.2) MUTATED       1    13
  DEL PEAK  7(5Q14.2) WILD-TYPE     6    52
D22V4, multiclass
       clus
vv      DEL PEAK  7(5Q14.2) MUTATED DEL PEAK  7(5Q14.2) WILD-TYPE
  T1+T2                           1                             6
  T3+T4                          13                            52
D22V5, binary
                               cls
clus                             0  1
  DEL PEAK  7(5Q14.2) MUTATED    3 11
  DEL PEAK  7(5Q14.2) WILD-TYPE 15 42
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  7(5Q14.2) MUTATED      3   11
  DEL PEAK  7(5Q14.2) WILD-TYPE   15   42
   clus
vv  DEL PEAK  7(5Q14.2) MUTATED DEL PEAK  7(5Q14.2) WILD-TYPE
  0                           3                            15
  1                          11                            42
                               vv
clus                            M0 M1 MX
  DEL PEAK  7(5Q14.2) MUTATED    8  0  6
  DEL PEAK  7(5Q14.2) WILD-TYPE 31  3 24
D22V6, multiclass
    clus
vv   DEL PEAK  7(5Q14.2) MUTATED DEL PEAK  7(5Q14.2) WILD-TYPE
  M0                           8                            31
  M1                           0                             3
  MX                           6                            24
D22V7, binary
                               cls
clus                             0  1
  DEL PEAK  7(5Q14.2) MUTATED    6  8
  DEL PEAK  7(5Q14.2) WILD-TYPE 30 28
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  7(5Q14.2) MUTATED      6    8
  DEL PEAK  7(5Q14.2) WILD-TYPE   30   28
        clus
vv       DEL PEAK  7(5Q14.2) MUTATED DEL PEAK  7(5Q14.2) WILD-TYPE
  FEMALE                           6                            30
  MALE                             8                            28
                               vv
clus                            PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK  7(5Q14.2) MUTATED                                    13
  DEL PEAK  7(5Q14.2) WILD-TYPE                                  51
                               vv
clus                            PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK  7(5Q14.2) MUTATED                                       1
  DEL PEAK  7(5Q14.2) WILD-TYPE                                     4
                               vv
clus                            PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK  7(5Q14.2) MUTATED                                                  0
  DEL PEAK  7(5Q14.2) WILD-TYPE                                                2
D22V8, multiclass
                                                  clus
vv                                                 DEL PEAK  7(5Q14.2) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                       13
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                      1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                           0
                                                  clus
vv                                                 DEL PEAK  7(5Q14.2) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                         51
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                        4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                             2
D22V9, continuous
D22V10, continuous
                               vv
clus                            R0 R1 RX
  DEL PEAK  7(5Q14.2) MUTATED    7  5  1
  DEL PEAK  7(5Q14.2) WILD-TYPE 36 19  1
D22V11, multiclass
    clus
vv   DEL PEAK  7(5Q14.2) MUTATED DEL PEAK  7(5Q14.2) WILD-TYPE
  R0                           7                            36
  R1                           5                            19
  RX                           1                             1
D22V12, continuous

Clustering(23) Variable = DEL PEAK  8(6P25.2) MUTATION ANALYSIS
D23V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  8(6P25.2) MUTATED   15 12
  DEL PEAK  8(6P25.2) WILD-TYPE 25 17
  DEL PEAK  8(6P25.2) MUTATED DEL PEAK  8(6P25.2) WILD-TYPE 
                           27                            42 
  DEL PEAK  8(6P25.2) MUTATED DEL PEAK  8(6P25.2) WILD-TYPE 
                           12                            17 
$`DEL PEAK  8(6P25.2) MUTATED`
TCGA-F2-6879 TCGA-F2-A44H TCGA-FB-A545 TCGA-FZ-5920 TCGA-H6-8124 TCGA-H8-A6C1 
       10.98        19.27        12.66         2.01        12.89        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-8001 TCGA-HZ-8315 
        7.89         0.92         0.66         0.13         0.62         0.92 
TCGA-HZ-A4BK TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7889 
        1.51         4.77        21.90         4.04         3.62        15.81 
TCGA-IB-7890 TCGA-IB-7893 TCGA-IB-8127 TCGA-IB-A5SP TCGA-IB-A5SS TCGA-IB-A6UG 
       19.66         3.85        17.16         9.86        15.12         1.35 
TCGA-LB-A7SX TCGA-PZ-A5RE TCGA-US-A779 
        4.18         8.12        16.80 

$`DEL PEAK  8(6P25.2) WILD-TYPE`
TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-FB-A4P5 TCGA-FB-A5VM 
        9.70        11.84         7.10         5.03         0.13         2.47 
TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-A45N TCGA-HZ-7923 
        0.03         5.46        36.20        20.81         7.66         0.26 
TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 
       12.13        11.87         0.26         0.79         0.69         3.95 
TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H 
        0.53         0.10         0.16         2.99         0.76         0.95 
TCGA-HZ-A4BH TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 
        6.38        11.41        49.38        15.35        19.82        15.65 
TCGA-IB-7885 TCGA-IB-7888 TCGA-IB-7891 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-A5SO 
       27.98        43.79        16.04        15.98         0.56        10.82 
TCGA-IB-A5SQ TCGA-IB-A5ST TCGA-OE-A75W TCGA-Q3-A5QY TCGA-US-A77E TCGA-US-A77J 
        7.20         0.26         3.62        13.68        14.14        18.67 

  DEL PEAK  8(6P25.2) MUTATED DEL PEAK  8(6P25.2) WILD-TYPE 
                         0.13                          0.03 
  DEL PEAK  8(6P25.2) MUTATED DEL PEAK  8(6P25.2) WILD-TYPE 
                        21.90                         49.38 
  DEL PEAK  8(6P25.2) MUTATED DEL PEAK  8(6P25.2) WILD-TYPE 
                         7.89                          7.15 
[1] "0.1 - 21.9 (7.9)" "0.0 - 49.4 (7.2)"
                   TCGA-F2-6879                    TCGA-F2-6880 
  "DEL PEAK  8(6P25.2) MUTATED" "DEL PEAK  8(6P25.2) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"DEL PEAK  8(6P25.2) WILD-TYPE" "DEL PEAK  8(6P25.2) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"DEL PEAK  8(6P25.2) WILD-TYPE"   "DEL PEAK  8(6P25.2) MUTATED" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"DEL PEAK  8(6P25.2) WILD-TYPE"   "DEL PEAK  8(6P25.2) MUTATED" 
                   TCGA-FB-A5VM                    TCGA-FB-A78T 
"DEL PEAK  8(6P25.2) WILD-TYPE" "DEL PEAK  8(6P25.2) WILD-TYPE" 
                   TCGA-FB-A7DR                    TCGA-FZ-5920 
"DEL PEAK  8(6P25.2) WILD-TYPE"   "DEL PEAK  8(6P25.2) MUTATED" 
                   TCGA-FZ-5922                    TCGA-FZ-5923 
"DEL PEAK  8(6P25.2) WILD-TYPE" "DEL PEAK  8(6P25.2) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
  "DEL PEAK  8(6P25.2) MUTATED" "DEL PEAK  8(6P25.2) WILD-TYPE" 
                   TCGA-H8-A6C1                    TCGA-HZ-7289 
  "DEL PEAK  8(6P25.2) MUTATED"   "DEL PEAK  8(6P25.2) MUTATED" 
                   TCGA-HZ-7918                    TCGA-HZ-7919 
  "DEL PEAK  8(6P25.2) MUTATED"   "DEL PEAK  8(6P25.2) MUTATED" 
                   TCGA-HZ-7922                    TCGA-HZ-7923 
  "DEL PEAK  8(6P25.2) MUTATED" "DEL PEAK  8(6P25.2) WILD-TYPE" 
                   TCGA-HZ-7924                    TCGA-HZ-7925 
"DEL PEAK  8(6P25.2) WILD-TYPE" "DEL PEAK  8(6P25.2) WILD-TYPE" 
                   TCGA-HZ-7926                    TCGA-HZ-8001 
"DEL PEAK  8(6P25.2) WILD-TYPE"   "DEL PEAK  8(6P25.2) MUTATED" 
                   TCGA-HZ-8002                    TCGA-HZ-8003 
"DEL PEAK  8(6P25.2) WILD-TYPE" "DEL PEAK  8(6P25.2) WILD-TYPE" 
                   TCGA-HZ-8005                    TCGA-HZ-8315 
"DEL PEAK  8(6P25.2) WILD-TYPE"   "DEL PEAK  8(6P25.2) MUTATED" 
                   TCGA-HZ-8317                    TCGA-HZ-8519 
"DEL PEAK  8(6P25.2) WILD-TYPE" "DEL PEAK  8(6P25.2) WILD-TYPE" 
                   TCGA-HZ-8636                    TCGA-HZ-8638 
"DEL PEAK  8(6P25.2) WILD-TYPE" "DEL PEAK  8(6P25.2) WILD-TYPE" 
                   TCGA-HZ-A49G                    TCGA-HZ-A49H 
"DEL PEAK  8(6P25.2) WILD-TYPE" "DEL PEAK  8(6P25.2) WILD-TYPE" 
                   TCGA-HZ-A4BH                    TCGA-HZ-A4BK 
"DEL PEAK  8(6P25.2) WILD-TYPE"   "DEL PEAK  8(6P25.2) MUTATED" 
                   TCGA-IB-7644                    TCGA-IB-7645 
"DEL PEAK  8(6P25.2) WILD-TYPE" "DEL PEAK  8(6P25.2) WILD-TYPE" 
                   TCGA-IB-7646                    TCGA-IB-7647 
  "DEL PEAK  8(6P25.2) MUTATED"   "DEL PEAK  8(6P25.2) MUTATED" 
                   TCGA-IB-7649                    TCGA-IB-7651 
"DEL PEAK  8(6P25.2) WILD-TYPE" "DEL PEAK  8(6P25.2) WILD-TYPE" 
                   TCGA-IB-7652                    TCGA-IB-7885 
"DEL PEAK  8(6P25.2) WILD-TYPE" "DEL PEAK  8(6P25.2) WILD-TYPE" 
                   TCGA-IB-7886                    TCGA-IB-7887 
  "DEL PEAK  8(6P25.2) MUTATED"   "DEL PEAK  8(6P25.2) MUTATED" 
                   TCGA-IB-7888                    TCGA-IB-7889 
"DEL PEAK  8(6P25.2) WILD-TYPE"   "DEL PEAK  8(6P25.2) MUTATED" 
                   TCGA-IB-7890                    TCGA-IB-7891 
  "DEL PEAK  8(6P25.2) MUTATED" "DEL PEAK  8(6P25.2) WILD-TYPE" 
                   TCGA-IB-7893                    TCGA-IB-7897 
  "DEL PEAK  8(6P25.2) MUTATED" "DEL PEAK  8(6P25.2) WILD-TYPE" 
                   TCGA-IB-8126                    TCGA-IB-8127 
"DEL PEAK  8(6P25.2) WILD-TYPE"   "DEL PEAK  8(6P25.2) MUTATED" 
                   TCGA-IB-A5SO                    TCGA-IB-A5SP 
"DEL PEAK  8(6P25.2) WILD-TYPE"   "DEL PEAK  8(6P25.2) MUTATED" 
                   TCGA-IB-A5SQ                    TCGA-IB-A5SS 
"DEL PEAK  8(6P25.2) WILD-TYPE"   "DEL PEAK  8(6P25.2) MUTATED" 
                   TCGA-IB-A5ST                    TCGA-IB-A6UG 
"DEL PEAK  8(6P25.2) WILD-TYPE"   "DEL PEAK  8(6P25.2) MUTATED" 
                   TCGA-LB-A7SX                    TCGA-OE-A75W 
  "DEL PEAK  8(6P25.2) MUTATED" "DEL PEAK  8(6P25.2) WILD-TYPE" 
                   TCGA-PZ-A5RE                    TCGA-Q3-A5QY 
  "DEL PEAK  8(6P25.2) MUTATED" "DEL PEAK  8(6P25.2) WILD-TYPE" 
                   TCGA-US-A779                    TCGA-US-A77E 
  "DEL PEAK  8(6P25.2) MUTATED" "DEL PEAK  8(6P25.2) WILD-TYPE" 
                   TCGA-US-A77J 
"DEL PEAK  8(6P25.2) WILD-TYPE" 
                   TCGA-F2-6879                    TCGA-F2-6880 
  "DEL PEAK  8(6P25.2) MUTATED" "DEL PEAK  8(6P25.2) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"DEL PEAK  8(6P25.2) WILD-TYPE" "DEL PEAK  8(6P25.2) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"DEL PEAK  8(6P25.2) WILD-TYPE"   "DEL PEAK  8(6P25.2) MUTATED" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"DEL PEAK  8(6P25.2) WILD-TYPE"   "DEL PEAK  8(6P25.2) MUTATED" 
                   TCGA-FB-A5VM                    TCGA-FB-A78T 
"DEL PEAK  8(6P25.2) WILD-TYPE" "DEL PEAK  8(6P25.2) WILD-TYPE" 
                   TCGA-FB-A7DR                    TCGA-FZ-5920 
"DEL PEAK  8(6P25.2) WILD-TYPE"   "DEL PEAK  8(6P25.2) MUTATED" 
                   TCGA-FZ-5922                    TCGA-FZ-5923 
"DEL PEAK  8(6P25.2) WILD-TYPE" "DEL PEAK  8(6P25.2) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
  "DEL PEAK  8(6P25.2) MUTATED" "DEL PEAK  8(6P25.2) WILD-TYPE" 
                   TCGA-H8-A6C1                    TCGA-HZ-7289 
  "DEL PEAK  8(6P25.2) MUTATED"   "DEL PEAK  8(6P25.2) MUTATED" 
                   TCGA-HZ-7918                    TCGA-HZ-7919 
  "DEL PEAK  8(6P25.2) MUTATED"   "DEL PEAK  8(6P25.2) MUTATED" 
                   TCGA-HZ-7922                    TCGA-HZ-7923 
  "DEL PEAK  8(6P25.2) MUTATED" "DEL PEAK  8(6P25.2) WILD-TYPE" 
                   TCGA-HZ-7924                    TCGA-HZ-7925 
"DEL PEAK  8(6P25.2) WILD-TYPE" "DEL PEAK  8(6P25.2) WILD-TYPE" 
                   TCGA-HZ-7926                    TCGA-HZ-8001 
"DEL PEAK  8(6P25.2) WILD-TYPE"   "DEL PEAK  8(6P25.2) MUTATED" 
                   TCGA-HZ-8002                    TCGA-HZ-8003 
"DEL PEAK  8(6P25.2) WILD-TYPE" "DEL PEAK  8(6P25.2) WILD-TYPE" 
                   TCGA-HZ-8005                    TCGA-HZ-8315 
"DEL PEAK  8(6P25.2) WILD-TYPE"   "DEL PEAK  8(6P25.2) MUTATED" 
                   TCGA-HZ-8317                    TCGA-HZ-8519 
"DEL PEAK  8(6P25.2) WILD-TYPE" "DEL PEAK  8(6P25.2) WILD-TYPE" 
                   TCGA-HZ-8636                    TCGA-HZ-8638 
"DEL PEAK  8(6P25.2) WILD-TYPE" "DEL PEAK  8(6P25.2) WILD-TYPE" 
                   TCGA-HZ-A49G                    TCGA-HZ-A49H 
"DEL PEAK  8(6P25.2) WILD-TYPE" "DEL PEAK  8(6P25.2) WILD-TYPE" 
                   TCGA-HZ-A4BH                    TCGA-HZ-A4BK 
"DEL PEAK  8(6P25.2) WILD-TYPE"   "DEL PEAK  8(6P25.2) MUTATED" 
                   TCGA-IB-7644                    TCGA-IB-7645 
"DEL PEAK  8(6P25.2) WILD-TYPE" "DEL PEAK  8(6P25.2) WILD-TYPE" 
                   TCGA-IB-7646                    TCGA-IB-7647 
  "DEL PEAK  8(6P25.2) MUTATED"   "DEL PEAK  8(6P25.2) MUTATED" 
                   TCGA-IB-7649                    TCGA-IB-7651 
"DEL PEAK  8(6P25.2) WILD-TYPE" "DEL PEAK  8(6P25.2) WILD-TYPE" 
                   TCGA-IB-7652                    TCGA-IB-7885 
"DEL PEAK  8(6P25.2) WILD-TYPE" "DEL PEAK  8(6P25.2) WILD-TYPE" 
                   TCGA-IB-7886                    TCGA-IB-7887 
  "DEL PEAK  8(6P25.2) MUTATED"   "DEL PEAK  8(6P25.2) MUTATED" 
                   TCGA-IB-7888                    TCGA-IB-7889 
"DEL PEAK  8(6P25.2) WILD-TYPE"   "DEL PEAK  8(6P25.2) MUTATED" 
                   TCGA-IB-7890                    TCGA-IB-7891 
  "DEL PEAK  8(6P25.2) MUTATED" "DEL PEAK  8(6P25.2) WILD-TYPE" 
                   TCGA-IB-7893                    TCGA-IB-7897 
  "DEL PEAK  8(6P25.2) MUTATED" "DEL PEAK  8(6P25.2) WILD-TYPE" 
                   TCGA-IB-8126                    TCGA-IB-8127 
"DEL PEAK  8(6P25.2) WILD-TYPE"   "DEL PEAK  8(6P25.2) MUTATED" 
                   TCGA-IB-A5SO                    TCGA-IB-A5SP 
"DEL PEAK  8(6P25.2) WILD-TYPE"   "DEL PEAK  8(6P25.2) MUTATED" 
                   TCGA-IB-A5SQ                    TCGA-IB-A5SS 
"DEL PEAK  8(6P25.2) WILD-TYPE"   "DEL PEAK  8(6P25.2) MUTATED" 
                   TCGA-IB-A5ST                    TCGA-IB-A6UG 
"DEL PEAK  8(6P25.2) WILD-TYPE"   "DEL PEAK  8(6P25.2) MUTATED" 
                   TCGA-LB-A7SX                    TCGA-OE-A75W 
  "DEL PEAK  8(6P25.2) MUTATED" "DEL PEAK  8(6P25.2) WILD-TYPE" 
                   TCGA-PZ-A5RE                    TCGA-Q3-A5QY 
  "DEL PEAK  8(6P25.2) MUTATED" "DEL PEAK  8(6P25.2) WILD-TYPE" 
                   TCGA-US-A779                    TCGA-US-A77E 
  "DEL PEAK  8(6P25.2) MUTATED" "DEL PEAK  8(6P25.2) WILD-TYPE" 
                   TCGA-US-A77J 
"DEL PEAK  8(6P25.2) WILD-TYPE" 
                   TCGA-F2-6879                    TCGA-F2-6880 
  "DEL PEAK  8(6P25.2) MUTATED" "DEL PEAK  8(6P25.2) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"DEL PEAK  8(6P25.2) WILD-TYPE" "DEL PEAK  8(6P25.2) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"DEL PEAK  8(6P25.2) WILD-TYPE"   "DEL PEAK  8(6P25.2) MUTATED" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"DEL PEAK  8(6P25.2) WILD-TYPE"   "DEL PEAK  8(6P25.2) MUTATED" 
                   TCGA-FB-A5VM                    TCGA-FB-A78T 
"DEL PEAK  8(6P25.2) WILD-TYPE" "DEL PEAK  8(6P25.2) WILD-TYPE" 
                   TCGA-FB-A7DR                    TCGA-FZ-5920 
"DEL PEAK  8(6P25.2) WILD-TYPE"   "DEL PEAK  8(6P25.2) MUTATED" 
                   TCGA-FZ-5922                    TCGA-FZ-5923 
"DEL PEAK  8(6P25.2) WILD-TYPE" "DEL PEAK  8(6P25.2) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
  "DEL PEAK  8(6P25.2) MUTATED" "DEL PEAK  8(6P25.2) WILD-TYPE" 
                   TCGA-H8-A6C1                    TCGA-HZ-7289 
  "DEL PEAK  8(6P25.2) MUTATED"   "DEL PEAK  8(6P25.2) MUTATED" 
                   TCGA-HZ-7918                    TCGA-HZ-7919 
  "DEL PEAK  8(6P25.2) MUTATED"   "DEL PEAK  8(6P25.2) MUTATED" 
                   TCGA-HZ-7922                    TCGA-HZ-7923 
  "DEL PEAK  8(6P25.2) MUTATED" "DEL PEAK  8(6P25.2) WILD-TYPE" 
                   TCGA-HZ-7924                    TCGA-HZ-7925 
"DEL PEAK  8(6P25.2) WILD-TYPE" "DEL PEAK  8(6P25.2) WILD-TYPE" 
                   TCGA-HZ-7926                    TCGA-HZ-8001 
"DEL PEAK  8(6P25.2) WILD-TYPE"   "DEL PEAK  8(6P25.2) MUTATED" 
                   TCGA-HZ-8002                    TCGA-HZ-8003 
"DEL PEAK  8(6P25.2) WILD-TYPE" "DEL PEAK  8(6P25.2) WILD-TYPE" 
                   TCGA-HZ-8005                    TCGA-HZ-8315 
"DEL PEAK  8(6P25.2) WILD-TYPE"   "DEL PEAK  8(6P25.2) MUTATED" 
                   TCGA-HZ-8317                    TCGA-HZ-8519 
"DEL PEAK  8(6P25.2) WILD-TYPE" "DEL PEAK  8(6P25.2) WILD-TYPE" 
                   TCGA-HZ-8636                    TCGA-HZ-8638 
"DEL PEAK  8(6P25.2) WILD-TYPE" "DEL PEAK  8(6P25.2) WILD-TYPE" 
                   TCGA-HZ-A49G                    TCGA-HZ-A49H 
"DEL PEAK  8(6P25.2) WILD-TYPE" "DEL PEAK  8(6P25.2) WILD-TYPE" 
                   TCGA-HZ-A4BH                    TCGA-HZ-A4BK 
"DEL PEAK  8(6P25.2) WILD-TYPE"   "DEL PEAK  8(6P25.2) MUTATED" 
                   TCGA-IB-7644                    TCGA-IB-7645 
"DEL PEAK  8(6P25.2) WILD-TYPE" "DEL PEAK  8(6P25.2) WILD-TYPE" 
                   TCGA-IB-7646                    TCGA-IB-7647 
  "DEL PEAK  8(6P25.2) MUTATED"   "DEL PEAK  8(6P25.2) MUTATED" 
                   TCGA-IB-7649                    TCGA-IB-7651 
"DEL PEAK  8(6P25.2) WILD-TYPE" "DEL PEAK  8(6P25.2) WILD-TYPE" 
                   TCGA-IB-7652                    TCGA-IB-7885 
"DEL PEAK  8(6P25.2) WILD-TYPE" "DEL PEAK  8(6P25.2) WILD-TYPE" 
                   TCGA-IB-7886                    TCGA-IB-7887 
  "DEL PEAK  8(6P25.2) MUTATED"   "DEL PEAK  8(6P25.2) MUTATED" 
                   TCGA-IB-7888                    TCGA-IB-7889 
"DEL PEAK  8(6P25.2) WILD-TYPE"   "DEL PEAK  8(6P25.2) MUTATED" 
                   TCGA-IB-7890                    TCGA-IB-7891 
  "DEL PEAK  8(6P25.2) MUTATED" "DEL PEAK  8(6P25.2) WILD-TYPE" 
                   TCGA-IB-7893                    TCGA-IB-7897 
  "DEL PEAK  8(6P25.2) MUTATED" "DEL PEAK  8(6P25.2) WILD-TYPE" 
                   TCGA-IB-8126                    TCGA-IB-8127 
"DEL PEAK  8(6P25.2) WILD-TYPE"   "DEL PEAK  8(6P25.2) MUTATED" 
                   TCGA-IB-A5SO                    TCGA-IB-A5SP 
"DEL PEAK  8(6P25.2) WILD-TYPE"   "DEL PEAK  8(6P25.2) MUTATED" 
                   TCGA-IB-A5SQ                    TCGA-IB-A5SS 
"DEL PEAK  8(6P25.2) WILD-TYPE"   "DEL PEAK  8(6P25.2) MUTATED" 
                   TCGA-IB-A5ST                    TCGA-IB-A6UG 
"DEL PEAK  8(6P25.2) WILD-TYPE"   "DEL PEAK  8(6P25.2) MUTATED" 
                   TCGA-LB-A7SX                    TCGA-OE-A75W 
  "DEL PEAK  8(6P25.2) MUTATED" "DEL PEAK  8(6P25.2) WILD-TYPE" 
                   TCGA-PZ-A5RE                    TCGA-Q3-A5QY 
  "DEL PEAK  8(6P25.2) MUTATED" "DEL PEAK  8(6P25.2) WILD-TYPE" 
                   TCGA-US-A779                    TCGA-US-A77E 
  "DEL PEAK  8(6P25.2) MUTATED" "DEL PEAK  8(6P25.2) WILD-TYPE" 
                   TCGA-US-A77J 
"DEL PEAK  8(6P25.2) WILD-TYPE" 
[1] "hr=" "1.6"
D23V2, continuous
                               vv
clus                            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III
  DEL PEAK  8(6P25.2) MUTATED          0        1         5        20         1
  DEL PEAK  8(6P25.2) WILD-TYPE        2        3         6        30         1
                               vv
clus                            STAGE IV
  DEL PEAK  8(6P25.2) MUTATED          0
  DEL PEAK  8(6P25.2) WILD-TYPE        3
D23V3, multiclass
                               vv
clus                            T1+T2 T3+T4
  DEL PEAK  8(6P25.2) MUTATED       1    26
  DEL PEAK  8(6P25.2) WILD-TYPE     6    39
D23V4, multiclass
       clus
vv      DEL PEAK  8(6P25.2) MUTATED DEL PEAK  8(6P25.2) WILD-TYPE
  T1+T2                           1                             6
  T3+T4                          26                            39
D23V5, binary
                               cls
clus                             0  1
  DEL PEAK  8(6P25.2) MUTATED    7 20
  DEL PEAK  8(6P25.2) WILD-TYPE 11 33
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  8(6P25.2) MUTATED      7   20
  DEL PEAK  8(6P25.2) WILD-TYPE   11   33
   clus
vv  DEL PEAK  8(6P25.2) MUTATED DEL PEAK  8(6P25.2) WILD-TYPE
  0                           7                            11
  1                          20                            33
                               vv
clus                            M0 M1 MX
  DEL PEAK  8(6P25.2) MUTATED   18  0  9
  DEL PEAK  8(6P25.2) WILD-TYPE 21  3 21
D23V6, multiclass
    clus
vv   DEL PEAK  8(6P25.2) MUTATED DEL PEAK  8(6P25.2) WILD-TYPE
  M0                          18                            21
  M1                           0                             3
  MX                           9                            21
D23V7, binary
                               cls
clus                             0  1
  DEL PEAK  8(6P25.2) MUTATED   12 15
  DEL PEAK  8(6P25.2) WILD-TYPE 24 21
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  8(6P25.2) MUTATED     12   15
  DEL PEAK  8(6P25.2) WILD-TYPE   24   21
        clus
vv       DEL PEAK  8(6P25.2) MUTATED DEL PEAK  8(6P25.2) WILD-TYPE
  FEMALE                          12                            24
  MALE                            15                            21
                               vv
clus                            PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK  8(6P25.2) MUTATED                                    23
  DEL PEAK  8(6P25.2) WILD-TYPE                                  41
                               vv
clus                            PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK  8(6P25.2) MUTATED                                       3
  DEL PEAK  8(6P25.2) WILD-TYPE                                     2
                               vv
clus                            PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK  8(6P25.2) MUTATED                                                  0
  DEL PEAK  8(6P25.2) WILD-TYPE                                                2
D23V8, multiclass
                                                  clus
vv                                                 DEL PEAK  8(6P25.2) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                       23
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                      3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                           0
                                                  clus
vv                                                 DEL PEAK  8(6P25.2) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                         41
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                        2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                             2
D23V9, continuous
D23V10, continuous
                               vv
clus                            R0 R1 RX
  DEL PEAK  8(6P25.2) MUTATED   13 11  1
  DEL PEAK  8(6P25.2) WILD-TYPE 30 13  1
D23V11, multiclass
    clus
vv   DEL PEAK  8(6P25.2) MUTATED DEL PEAK  8(6P25.2) WILD-TYPE
  R0                          13                            30
  R1                          11                            13
  RX                           1                             1
D23V12, continuous

Clustering(24) Variable = DEL PEAK  9(7Q36.1) MUTATION ANALYSIS
D24V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  9(7Q36.1) MUTATED    4  2
  DEL PEAK  9(7Q36.1) WILD-TYPE 36 27
  DEL PEAK  9(7Q36.1) MUTATED DEL PEAK  9(7Q36.1) WILD-TYPE 
                            6                            63 
  DEL PEAK  9(7Q36.1) MUTATED DEL PEAK  9(7Q36.1) WILD-TYPE 
                            2                            27 
$`DEL PEAK  9(7Q36.1) MUTATED`
TCGA-H6-8124 TCGA-HZ-7922 TCGA-HZ-A4BH TCGA-IB-7646 TCGA-IB-7890 TCGA-PZ-A5RE 
       12.89         0.13         6.38         4.77        19.66         8.12 

$`DEL PEAK  9(7Q36.1) WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 
        0.13        12.66         2.47         0.03         5.46         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 
       36.20        20.81         7.66        13.02         7.89         0.92 
TCGA-HZ-7919 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 
        0.66         0.26        12.13        11.87         0.26         0.62 
TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 
        0.79         0.69         3.95         0.92         0.53         0.10 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BK TCGA-IB-7644 
        0.16         2.99         0.76         0.95         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 
       49.38        21.90        15.35        19.82        15.65        27.98 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7891 TCGA-IB-7893 
        4.04         3.62        43.79        15.81        16.04         3.85 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ 
       15.98         0.56        17.16        10.82         9.86         7.20 
TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W TCGA-Q3-A5QY 
       15.12         0.26         1.35         4.18         3.62        13.68 
TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       16.80        14.14        18.67 

  DEL PEAK  9(7Q36.1) MUTATED DEL PEAK  9(7Q36.1) WILD-TYPE 
                         0.13                          0.03 
  DEL PEAK  9(7Q36.1) MUTATED DEL PEAK  9(7Q36.1) WILD-TYPE 
                        19.66                         49.38 
  DEL PEAK  9(7Q36.1) MUTATED DEL PEAK  9(7Q36.1) WILD-TYPE 
                         7.25                          7.20 
[1] "0.1 - 19.7 (7.2)" "0.0 - 49.4 (7.2)"
                   TCGA-F2-6879                    TCGA-F2-6880 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-FB-A5VM                    TCGA-FB-A78T 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-FB-A7DR                    TCGA-FZ-5920 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-FZ-5922                    TCGA-FZ-5923 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
  "DEL PEAK  9(7Q36.1) MUTATED" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-H8-A6C1                    TCGA-HZ-7289 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-HZ-7918                    TCGA-HZ-7919 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-HZ-7922                    TCGA-HZ-7923 
  "DEL PEAK  9(7Q36.1) MUTATED" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-HZ-7924                    TCGA-HZ-7925 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-HZ-7926                    TCGA-HZ-8001 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-HZ-8002                    TCGA-HZ-8003 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-HZ-8005                    TCGA-HZ-8315 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-HZ-8317                    TCGA-HZ-8519 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-HZ-8636                    TCGA-HZ-8638 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-HZ-A49G                    TCGA-HZ-A49H 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-HZ-A4BH                    TCGA-HZ-A4BK 
  "DEL PEAK  9(7Q36.1) MUTATED" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-IB-7644                    TCGA-IB-7645 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-IB-7646                    TCGA-IB-7647 
  "DEL PEAK  9(7Q36.1) MUTATED" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-IB-7649                    TCGA-IB-7651 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-IB-7652                    TCGA-IB-7885 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-IB-7886                    TCGA-IB-7887 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-IB-7888                    TCGA-IB-7889 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-IB-7890                    TCGA-IB-7891 
  "DEL PEAK  9(7Q36.1) MUTATED" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-IB-7893                    TCGA-IB-7897 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-IB-8126                    TCGA-IB-8127 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-IB-A5SO                    TCGA-IB-A5SP 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-IB-A5SQ                    TCGA-IB-A5SS 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-IB-A5ST                    TCGA-IB-A6UG 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-LB-A7SX                    TCGA-OE-A75W 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-PZ-A5RE                    TCGA-Q3-A5QY 
  "DEL PEAK  9(7Q36.1) MUTATED" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-US-A779                    TCGA-US-A77E 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-US-A77J 
"DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-F2-6879                    TCGA-F2-6880 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-FB-A5VM                    TCGA-FB-A78T 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-FB-A7DR                    TCGA-FZ-5920 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-FZ-5922                    TCGA-FZ-5923 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
  "DEL PEAK  9(7Q36.1) MUTATED" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-H8-A6C1                    TCGA-HZ-7289 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-HZ-7918                    TCGA-HZ-7919 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-HZ-7922                    TCGA-HZ-7923 
  "DEL PEAK  9(7Q36.1) MUTATED" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-HZ-7924                    TCGA-HZ-7925 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-HZ-7926                    TCGA-HZ-8001 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-HZ-8002                    TCGA-HZ-8003 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-HZ-8005                    TCGA-HZ-8315 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-HZ-8317                    TCGA-HZ-8519 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-HZ-8636                    TCGA-HZ-8638 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-HZ-A49G                    TCGA-HZ-A49H 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-HZ-A4BH                    TCGA-HZ-A4BK 
  "DEL PEAK  9(7Q36.1) MUTATED" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-IB-7644                    TCGA-IB-7645 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-IB-7646                    TCGA-IB-7647 
  "DEL PEAK  9(7Q36.1) MUTATED" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-IB-7649                    TCGA-IB-7651 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-IB-7652                    TCGA-IB-7885 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-IB-7886                    TCGA-IB-7887 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-IB-7888                    TCGA-IB-7889 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-IB-7890                    TCGA-IB-7891 
  "DEL PEAK  9(7Q36.1) MUTATED" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-IB-7893                    TCGA-IB-7897 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-IB-8126                    TCGA-IB-8127 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-IB-A5SO                    TCGA-IB-A5SP 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-IB-A5SQ                    TCGA-IB-A5SS 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-IB-A5ST                    TCGA-IB-A6UG 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-LB-A7SX                    TCGA-OE-A75W 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-PZ-A5RE                    TCGA-Q3-A5QY 
  "DEL PEAK  9(7Q36.1) MUTATED" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-US-A779                    TCGA-US-A77E 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-US-A77J 
"DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-F2-6879                    TCGA-F2-6880 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-FB-A5VM                    TCGA-FB-A78T 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-FB-A7DR                    TCGA-FZ-5920 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-FZ-5922                    TCGA-FZ-5923 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
  "DEL PEAK  9(7Q36.1) MUTATED" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-H8-A6C1                    TCGA-HZ-7289 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-HZ-7918                    TCGA-HZ-7919 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-HZ-7922                    TCGA-HZ-7923 
  "DEL PEAK  9(7Q36.1) MUTATED" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-HZ-7924                    TCGA-HZ-7925 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-HZ-7926                    TCGA-HZ-8001 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-HZ-8002                    TCGA-HZ-8003 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-HZ-8005                    TCGA-HZ-8315 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-HZ-8317                    TCGA-HZ-8519 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-HZ-8636                    TCGA-HZ-8638 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-HZ-A49G                    TCGA-HZ-A49H 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-HZ-A4BH                    TCGA-HZ-A4BK 
  "DEL PEAK  9(7Q36.1) MUTATED" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-IB-7644                    TCGA-IB-7645 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-IB-7646                    TCGA-IB-7647 
  "DEL PEAK  9(7Q36.1) MUTATED" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-IB-7649                    TCGA-IB-7651 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-IB-7652                    TCGA-IB-7885 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-IB-7886                    TCGA-IB-7887 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-IB-7888                    TCGA-IB-7889 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-IB-7890                    TCGA-IB-7891 
  "DEL PEAK  9(7Q36.1) MUTATED" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-IB-7893                    TCGA-IB-7897 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-IB-8126                    TCGA-IB-8127 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-IB-A5SO                    TCGA-IB-A5SP 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-IB-A5SQ                    TCGA-IB-A5SS 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-IB-A5ST                    TCGA-IB-A6UG 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-LB-A7SX                    TCGA-OE-A75W 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-PZ-A5RE                    TCGA-Q3-A5QY 
  "DEL PEAK  9(7Q36.1) MUTATED" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-US-A779                    TCGA-US-A77E 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-US-A77J 
"DEL PEAK  9(7Q36.1) WILD-TYPE" 
[1] "hr=" "1"  
D24V2, continuous
                               vv
clus                            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III
  DEL PEAK  9(7Q36.1) MUTATED          0        1         0         5         0
  DEL PEAK  9(7Q36.1) WILD-TYPE        2        3        11        45         2
                               vv
clus                            STAGE IV
  DEL PEAK  9(7Q36.1) MUTATED          0
  DEL PEAK  9(7Q36.1) WILD-TYPE        3
D24V3, multiclass
                               vv
clus                            T1+T2 T3+T4
  DEL PEAK  9(7Q36.1) MUTATED       1     5
  DEL PEAK  9(7Q36.1) WILD-TYPE     6    60
D24V4, multiclass
       clus
vv      DEL PEAK  9(7Q36.1) MUTATED DEL PEAK  9(7Q36.1) WILD-TYPE
  T1+T2                           1                             6
  T3+T4                           5                            60
D24V5, binary
                               cls
clus                             0  1
  DEL PEAK  9(7Q36.1) MUTATED    1  5
  DEL PEAK  9(7Q36.1) WILD-TYPE 17 48
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  9(7Q36.1) MUTATED      1    5
  DEL PEAK  9(7Q36.1) WILD-TYPE   17   48
   clus
vv  DEL PEAK  9(7Q36.1) MUTATED DEL PEAK  9(7Q36.1) WILD-TYPE
  0                           1                            17
  1                           5                            48
                               vv
clus                            M0 M1 MX
  DEL PEAK  9(7Q36.1) MUTATED    3  0  3
  DEL PEAK  9(7Q36.1) WILD-TYPE 36  3 27
D24V6, multiclass
    clus
vv   DEL PEAK  9(7Q36.1) MUTATED DEL PEAK  9(7Q36.1) WILD-TYPE
  M0                           3                            36
  M1                           0                             3
  MX                           3                            27
D24V7, binary
                               cls
clus                             0  1
  DEL PEAK  9(7Q36.1) MUTATED    3  3
  DEL PEAK  9(7Q36.1) WILD-TYPE 33 33
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  9(7Q36.1) MUTATED      3    3
  DEL PEAK  9(7Q36.1) WILD-TYPE   33   33
        clus
vv       DEL PEAK  9(7Q36.1) MUTATED DEL PEAK  9(7Q36.1) WILD-TYPE
  FEMALE                           3                            33
  MALE                             3                            33
                               vv
clus                            PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK  9(7Q36.1) MUTATED                                     6
  DEL PEAK  9(7Q36.1) WILD-TYPE                                  58
                               vv
clus                            PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK  9(7Q36.1) MUTATED                                       0
  DEL PEAK  9(7Q36.1) WILD-TYPE                                     5
                               vv
clus                            PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK  9(7Q36.1) MUTATED                                                  0
  DEL PEAK  9(7Q36.1) WILD-TYPE                                                2
D24V8, multiclass
                                                  clus
vv                                                 DEL PEAK  9(7Q36.1) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                        6
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                      0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                           0
                                                  clus
vv                                                 DEL PEAK  9(7Q36.1) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                         58
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                        5
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                             2
D24V9, continuous
[1] "Remove cluster labels:"      "DEL PEAK  9(7Q36.1) MUTATED"
clus
  DEL PEAK  9(7Q36.1) MUTATED DEL PEAK  9(7Q36.1) WILD-TYPE 
                            1                            20 
                   TCGA-F2-6880                    TCGA-FB-A4P5 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-FB-A5VM                    TCGA-FB-A78T 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-FB-A7DR                    TCGA-H6-A45N 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-H8-A6C1                    TCGA-IB-7644 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-IB-7649                    TCGA-IB-7651 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-IB-7887                    TCGA-IB-7891 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-IB-8126                    TCGA-IB-8127 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-IB-A5SS                    TCGA-IB-A6UG 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-LB-A7SX                    TCGA-OE-A75W 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
D24V10, continuous
[1] "Remove cluster labels:"      "DEL PEAK  9(7Q36.1) MUTATED"
clus
  DEL PEAK  9(7Q36.1) MUTATED DEL PEAK  9(7Q36.1) WILD-TYPE 
                            1                            17 
                   TCGA-FB-A4P5                    TCGA-FB-A5VM 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-FB-A78T                    TCGA-FB-A7DR 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-H8-A6C1                    TCGA-IB-7644 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-IB-7649                    TCGA-IB-7651 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-IB-7891                    TCGA-IB-8126 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-IB-8127                    TCGA-IB-A5SS 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-IB-A6UG                    TCGA-LB-A7SX 
"DEL PEAK  9(7Q36.1) WILD-TYPE" "DEL PEAK  9(7Q36.1) WILD-TYPE" 
                   TCGA-OE-A75W 
"DEL PEAK  9(7Q36.1) WILD-TYPE" 
                               vv
clus                            R0 R1 RX
  DEL PEAK  9(7Q36.1) MUTATED    3  2  0
  DEL PEAK  9(7Q36.1) WILD-TYPE 40 22  2
D24V11, multiclass
    clus
vv   DEL PEAK  9(7Q36.1) MUTATED DEL PEAK  9(7Q36.1) WILD-TYPE
  R0                           3                            40
  R1                           2                            22
  RX                           0                             2
D24V12, continuous

Clustering(25) Variable = DEL PEAK 10(8P21.3) MUTATION ANALYSIS
D25V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 10(8P21.3) MUTATED   11  8
  DEL PEAK 10(8P21.3) WILD-TYPE 29 21
  DEL PEAK 10(8P21.3) MUTATED DEL PEAK 10(8P21.3) WILD-TYPE 
                           19                            50 
  DEL PEAK 10(8P21.3) MUTATED DEL PEAK 10(8P21.3) WILD-TYPE 
                            8                            21 
$`DEL PEAK 10(8P21.3) MUTATED`
TCGA-F2-6879 TCGA-FB-A7DR TCGA-HZ-7289 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7925 
       10.98         5.46         7.89         0.66         0.13        11.87 
TCGA-HZ-8005 TCGA-HZ-8636 TCGA-HZ-A4BK TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7652 
        3.95         0.16         1.51         4.77        21.90        15.65 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7890 TCGA-IB-8127 TCGA-IB-A6UG TCGA-OE-A75W 
        4.04         3.62        19.66        17.16         1.35         3.62 
TCGA-PZ-A5RE 
        8.12 

$`DEL PEAK 10(8P21.3) WILD-TYPE`
TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
        9.70        11.84         7.10         5.03        19.27         0.13 
TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 
       12.66         2.47         0.03         2.01        36.20        20.81 
TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7918 TCGA-HZ-7923 TCGA-HZ-7924 
       12.89         7.66        13.02         0.92         0.26        12.13 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8317 
        0.26         0.62         0.79         0.69         0.92         0.53 
TCGA-HZ-8519 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-IB-7644 
        0.10         2.99         0.76         0.95         6.38        11.41 
TCGA-IB-7645 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7885 TCGA-IB-7888 TCGA-IB-7889 
       49.38        15.35        19.82        27.98        43.79        15.81 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-A5SO TCGA-IB-A5SP 
       16.04         3.85        15.98         0.56        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-LB-A7SX TCGA-Q3-A5QY TCGA-US-A779 
        7.20        15.12         0.26         4.18        13.68        16.80 
TCGA-US-A77E TCGA-US-A77J 
       14.14        18.67 

  DEL PEAK 10(8P21.3) MUTATED DEL PEAK 10(8P21.3) WILD-TYPE 
                         0.13                          0.03 
  DEL PEAK 10(8P21.3) MUTATED DEL PEAK 10(8P21.3) WILD-TYPE 
                        21.90                         49.38 
  DEL PEAK 10(8P21.3) MUTATED DEL PEAK 10(8P21.3) WILD-TYPE 
                         4.77                          8.68 
[1] "0.1 - 21.9 (4.8)" "0.0 - 49.4 (8.7)"
                   TCGA-F2-6879                    TCGA-F2-6880 
  "DEL PEAK 10(8P21.3) MUTATED" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"DEL PEAK 10(8P21.3) WILD-TYPE" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"DEL PEAK 10(8P21.3) WILD-TYPE" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"DEL PEAK 10(8P21.3) WILD-TYPE" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-FB-A5VM                    TCGA-FB-A78T 
"DEL PEAK 10(8P21.3) WILD-TYPE" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-FB-A7DR                    TCGA-FZ-5920 
  "DEL PEAK 10(8P21.3) MUTATED" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-FZ-5922                    TCGA-FZ-5923 
"DEL PEAK 10(8P21.3) WILD-TYPE" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
"DEL PEAK 10(8P21.3) WILD-TYPE" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-H8-A6C1                    TCGA-HZ-7289 
"DEL PEAK 10(8P21.3) WILD-TYPE"   "DEL PEAK 10(8P21.3) MUTATED" 
                   TCGA-HZ-7918                    TCGA-HZ-7919 
"DEL PEAK 10(8P21.3) WILD-TYPE"   "DEL PEAK 10(8P21.3) MUTATED" 
                   TCGA-HZ-7922                    TCGA-HZ-7923 
  "DEL PEAK 10(8P21.3) MUTATED" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-HZ-7924                    TCGA-HZ-7925 
"DEL PEAK 10(8P21.3) WILD-TYPE"   "DEL PEAK 10(8P21.3) MUTATED" 
                   TCGA-HZ-7926                    TCGA-HZ-8001 
"DEL PEAK 10(8P21.3) WILD-TYPE" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-HZ-8002                    TCGA-HZ-8003 
"DEL PEAK 10(8P21.3) WILD-TYPE" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-HZ-8005                    TCGA-HZ-8315 
  "DEL PEAK 10(8P21.3) MUTATED" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-HZ-8317                    TCGA-HZ-8519 
"DEL PEAK 10(8P21.3) WILD-TYPE" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-HZ-8636                    TCGA-HZ-8638 
  "DEL PEAK 10(8P21.3) MUTATED" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-HZ-A49G                    TCGA-HZ-A49H 
"DEL PEAK 10(8P21.3) WILD-TYPE" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-HZ-A4BH                    TCGA-HZ-A4BK 
"DEL PEAK 10(8P21.3) WILD-TYPE"   "DEL PEAK 10(8P21.3) MUTATED" 
                   TCGA-IB-7644                    TCGA-IB-7645 
"DEL PEAK 10(8P21.3) WILD-TYPE" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-IB-7646                    TCGA-IB-7647 
  "DEL PEAK 10(8P21.3) MUTATED"   "DEL PEAK 10(8P21.3) MUTATED" 
                   TCGA-IB-7649                    TCGA-IB-7651 
"DEL PEAK 10(8P21.3) WILD-TYPE" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-IB-7652                    TCGA-IB-7885 
  "DEL PEAK 10(8P21.3) MUTATED" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-IB-7886                    TCGA-IB-7887 
  "DEL PEAK 10(8P21.3) MUTATED"   "DEL PEAK 10(8P21.3) MUTATED" 
                   TCGA-IB-7888                    TCGA-IB-7889 
"DEL PEAK 10(8P21.3) WILD-TYPE" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-IB-7890                    TCGA-IB-7891 
  "DEL PEAK 10(8P21.3) MUTATED" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-IB-7893                    TCGA-IB-7897 
"DEL PEAK 10(8P21.3) WILD-TYPE" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-IB-8126                    TCGA-IB-8127 
"DEL PEAK 10(8P21.3) WILD-TYPE"   "DEL PEAK 10(8P21.3) MUTATED" 
                   TCGA-IB-A5SO                    TCGA-IB-A5SP 
"DEL PEAK 10(8P21.3) WILD-TYPE" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-IB-A5SQ                    TCGA-IB-A5SS 
"DEL PEAK 10(8P21.3) WILD-TYPE" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-IB-A5ST                    TCGA-IB-A6UG 
"DEL PEAK 10(8P21.3) WILD-TYPE"   "DEL PEAK 10(8P21.3) MUTATED" 
                   TCGA-LB-A7SX                    TCGA-OE-A75W 
"DEL PEAK 10(8P21.3) WILD-TYPE"   "DEL PEAK 10(8P21.3) MUTATED" 
                   TCGA-PZ-A5RE                    TCGA-Q3-A5QY 
  "DEL PEAK 10(8P21.3) MUTATED" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-US-A779                    TCGA-US-A77E 
"DEL PEAK 10(8P21.3) WILD-TYPE" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-US-A77J 
"DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-F2-6879                    TCGA-F2-6880 
  "DEL PEAK 10(8P21.3) MUTATED" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"DEL PEAK 10(8P21.3) WILD-TYPE" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"DEL PEAK 10(8P21.3) WILD-TYPE" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"DEL PEAK 10(8P21.3) WILD-TYPE" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-FB-A5VM                    TCGA-FB-A78T 
"DEL PEAK 10(8P21.3) WILD-TYPE" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-FB-A7DR                    TCGA-FZ-5920 
  "DEL PEAK 10(8P21.3) MUTATED" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-FZ-5922                    TCGA-FZ-5923 
"DEL PEAK 10(8P21.3) WILD-TYPE" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
"DEL PEAK 10(8P21.3) WILD-TYPE" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-H8-A6C1                    TCGA-HZ-7289 
"DEL PEAK 10(8P21.3) WILD-TYPE"   "DEL PEAK 10(8P21.3) MUTATED" 
                   TCGA-HZ-7918                    TCGA-HZ-7919 
"DEL PEAK 10(8P21.3) WILD-TYPE"   "DEL PEAK 10(8P21.3) MUTATED" 
                   TCGA-HZ-7922                    TCGA-HZ-7923 
  "DEL PEAK 10(8P21.3) MUTATED" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-HZ-7924                    TCGA-HZ-7925 
"DEL PEAK 10(8P21.3) WILD-TYPE"   "DEL PEAK 10(8P21.3) MUTATED" 
                   TCGA-HZ-7926                    TCGA-HZ-8001 
"DEL PEAK 10(8P21.3) WILD-TYPE" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-HZ-8002                    TCGA-HZ-8003 
"DEL PEAK 10(8P21.3) WILD-TYPE" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-HZ-8005                    TCGA-HZ-8315 
  "DEL PEAK 10(8P21.3) MUTATED" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-HZ-8317                    TCGA-HZ-8519 
"DEL PEAK 10(8P21.3) WILD-TYPE" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-HZ-8636                    TCGA-HZ-8638 
  "DEL PEAK 10(8P21.3) MUTATED" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-HZ-A49G                    TCGA-HZ-A49H 
"DEL PEAK 10(8P21.3) WILD-TYPE" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-HZ-A4BH                    TCGA-HZ-A4BK 
"DEL PEAK 10(8P21.3) WILD-TYPE"   "DEL PEAK 10(8P21.3) MUTATED" 
                   TCGA-IB-7644                    TCGA-IB-7645 
"DEL PEAK 10(8P21.3) WILD-TYPE" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-IB-7646                    TCGA-IB-7647 
  "DEL PEAK 10(8P21.3) MUTATED"   "DEL PEAK 10(8P21.3) MUTATED" 
                   TCGA-IB-7649                    TCGA-IB-7651 
"DEL PEAK 10(8P21.3) WILD-TYPE" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-IB-7652                    TCGA-IB-7885 
  "DEL PEAK 10(8P21.3) MUTATED" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-IB-7886                    TCGA-IB-7887 
  "DEL PEAK 10(8P21.3) MUTATED"   "DEL PEAK 10(8P21.3) MUTATED" 
                   TCGA-IB-7888                    TCGA-IB-7889 
"DEL PEAK 10(8P21.3) WILD-TYPE" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-IB-7890                    TCGA-IB-7891 
  "DEL PEAK 10(8P21.3) MUTATED" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-IB-7893                    TCGA-IB-7897 
"DEL PEAK 10(8P21.3) WILD-TYPE" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-IB-8126                    TCGA-IB-8127 
"DEL PEAK 10(8P21.3) WILD-TYPE"   "DEL PEAK 10(8P21.3) MUTATED" 
                   TCGA-IB-A5SO                    TCGA-IB-A5SP 
"DEL PEAK 10(8P21.3) WILD-TYPE" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-IB-A5SQ                    TCGA-IB-A5SS 
"DEL PEAK 10(8P21.3) WILD-TYPE" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-IB-A5ST                    TCGA-IB-A6UG 
"DEL PEAK 10(8P21.3) WILD-TYPE"   "DEL PEAK 10(8P21.3) MUTATED" 
                   TCGA-LB-A7SX                    TCGA-OE-A75W 
"DEL PEAK 10(8P21.3) WILD-TYPE"   "DEL PEAK 10(8P21.3) MUTATED" 
                   TCGA-PZ-A5RE                    TCGA-Q3-A5QY 
  "DEL PEAK 10(8P21.3) MUTATED" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-US-A779                    TCGA-US-A77E 
"DEL PEAK 10(8P21.3) WILD-TYPE" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-US-A77J 
"DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-F2-6879                    TCGA-F2-6880 
  "DEL PEAK 10(8P21.3) MUTATED" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"DEL PEAK 10(8P21.3) WILD-TYPE" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"DEL PEAK 10(8P21.3) WILD-TYPE" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"DEL PEAK 10(8P21.3) WILD-TYPE" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-FB-A5VM                    TCGA-FB-A78T 
"DEL PEAK 10(8P21.3) WILD-TYPE" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-FB-A7DR                    TCGA-FZ-5920 
  "DEL PEAK 10(8P21.3) MUTATED" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-FZ-5922                    TCGA-FZ-5923 
"DEL PEAK 10(8P21.3) WILD-TYPE" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
"DEL PEAK 10(8P21.3) WILD-TYPE" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-H8-A6C1                    TCGA-HZ-7289 
"DEL PEAK 10(8P21.3) WILD-TYPE"   "DEL PEAK 10(8P21.3) MUTATED" 
                   TCGA-HZ-7918                    TCGA-HZ-7919 
"DEL PEAK 10(8P21.3) WILD-TYPE"   "DEL PEAK 10(8P21.3) MUTATED" 
                   TCGA-HZ-7922                    TCGA-HZ-7923 
  "DEL PEAK 10(8P21.3) MUTATED" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-HZ-7924                    TCGA-HZ-7925 
"DEL PEAK 10(8P21.3) WILD-TYPE"   "DEL PEAK 10(8P21.3) MUTATED" 
                   TCGA-HZ-7926                    TCGA-HZ-8001 
"DEL PEAK 10(8P21.3) WILD-TYPE" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-HZ-8002                    TCGA-HZ-8003 
"DEL PEAK 10(8P21.3) WILD-TYPE" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-HZ-8005                    TCGA-HZ-8315 
  "DEL PEAK 10(8P21.3) MUTATED" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-HZ-8317                    TCGA-HZ-8519 
"DEL PEAK 10(8P21.3) WILD-TYPE" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-HZ-8636                    TCGA-HZ-8638 
  "DEL PEAK 10(8P21.3) MUTATED" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-HZ-A49G                    TCGA-HZ-A49H 
"DEL PEAK 10(8P21.3) WILD-TYPE" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-HZ-A4BH                    TCGA-HZ-A4BK 
"DEL PEAK 10(8P21.3) WILD-TYPE"   "DEL PEAK 10(8P21.3) MUTATED" 
                   TCGA-IB-7644                    TCGA-IB-7645 
"DEL PEAK 10(8P21.3) WILD-TYPE" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-IB-7646                    TCGA-IB-7647 
  "DEL PEAK 10(8P21.3) MUTATED"   "DEL PEAK 10(8P21.3) MUTATED" 
                   TCGA-IB-7649                    TCGA-IB-7651 
"DEL PEAK 10(8P21.3) WILD-TYPE" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-IB-7652                    TCGA-IB-7885 
  "DEL PEAK 10(8P21.3) MUTATED" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-IB-7886                    TCGA-IB-7887 
  "DEL PEAK 10(8P21.3) MUTATED"   "DEL PEAK 10(8P21.3) MUTATED" 
                   TCGA-IB-7888                    TCGA-IB-7889 
"DEL PEAK 10(8P21.3) WILD-TYPE" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-IB-7890                    TCGA-IB-7891 
  "DEL PEAK 10(8P21.3) MUTATED" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-IB-7893                    TCGA-IB-7897 
"DEL PEAK 10(8P21.3) WILD-TYPE" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-IB-8126                    TCGA-IB-8127 
"DEL PEAK 10(8P21.3) WILD-TYPE"   "DEL PEAK 10(8P21.3) MUTATED" 
                   TCGA-IB-A5SO                    TCGA-IB-A5SP 
"DEL PEAK 10(8P21.3) WILD-TYPE" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-IB-A5SQ                    TCGA-IB-A5SS 
"DEL PEAK 10(8P21.3) WILD-TYPE" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-IB-A5ST                    TCGA-IB-A6UG 
"DEL PEAK 10(8P21.3) WILD-TYPE"   "DEL PEAK 10(8P21.3) MUTATED" 
                   TCGA-LB-A7SX                    TCGA-OE-A75W 
"DEL PEAK 10(8P21.3) WILD-TYPE"   "DEL PEAK 10(8P21.3) MUTATED" 
                   TCGA-PZ-A5RE                    TCGA-Q3-A5QY 
  "DEL PEAK 10(8P21.3) MUTATED" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-US-A779                    TCGA-US-A77E 
"DEL PEAK 10(8P21.3) WILD-TYPE" "DEL PEAK 10(8P21.3) WILD-TYPE" 
                   TCGA-US-A77J 
"DEL PEAK 10(8P21.3) WILD-TYPE" 
[1] "hr=" "1.5"
D25V2, continuous
                               vv
clus                            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III
  DEL PEAK 10(8P21.3) MUTATED          0        1         2        15         0
  DEL PEAK 10(8P21.3) WILD-TYPE        2        3         9        35         2
                               vv
clus                            STAGE IV
  DEL PEAK 10(8P21.3) MUTATED          1
  DEL PEAK 10(8P21.3) WILD-TYPE        2
D25V3, multiclass
                               vv
clus                            T1+T2 T3+T4
  DEL PEAK 10(8P21.3) MUTATED       1    18
  DEL PEAK 10(8P21.3) WILD-TYPE     6    47
D25V4, multiclass
       clus
vv      DEL PEAK 10(8P21.3) MUTATED DEL PEAK 10(8P21.3) WILD-TYPE
  T1+T2                           1                             6
  T3+T4                          18                            47
D25V5, binary
                               cls
clus                             0  1
  DEL PEAK 10(8P21.3) MUTATED    3 15
  DEL PEAK 10(8P21.3) WILD-TYPE 15 38
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 10(8P21.3) MUTATED      3   15
  DEL PEAK 10(8P21.3) WILD-TYPE   15   38
   clus
vv  DEL PEAK 10(8P21.3) MUTATED DEL PEAK 10(8P21.3) WILD-TYPE
  0                           3                            15
  1                          15                            38
                               vv
clus                            M0 M1 MX
  DEL PEAK 10(8P21.3) MUTATED   12  1  6
  DEL PEAK 10(8P21.3) WILD-TYPE 27  2 24
D25V6, multiclass
    clus
vv   DEL PEAK 10(8P21.3) MUTATED DEL PEAK 10(8P21.3) WILD-TYPE
  M0                          12                            27
  M1                           1                             2
  MX                           6                            24
D25V7, binary
                               cls
clus                             0  1
  DEL PEAK 10(8P21.3) MUTATED    7 12
  DEL PEAK 10(8P21.3) WILD-TYPE 29 24
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 10(8P21.3) MUTATED      7   12
  DEL PEAK 10(8P21.3) WILD-TYPE   29   24
        clus
vv       DEL PEAK 10(8P21.3) MUTATED DEL PEAK 10(8P21.3) WILD-TYPE
  FEMALE                           7                            29
  MALE                            12                            24
                               vv
clus                            PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK 10(8P21.3) MUTATED                                    15
  DEL PEAK 10(8P21.3) WILD-TYPE                                  49
                               vv
clus                            PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK 10(8P21.3) MUTATED                                       2
  DEL PEAK 10(8P21.3) WILD-TYPE                                     3
                               vv
clus                            PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK 10(8P21.3) MUTATED                                                  1
  DEL PEAK 10(8P21.3) WILD-TYPE                                                1
D25V8, multiclass
                                                  clus
vv                                                 DEL PEAK 10(8P21.3) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                       15
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                      2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                           1
                                                  clus
vv                                                 DEL PEAK 10(8P21.3) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                         49
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                        3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                             1
D25V9, continuous
D25V10, continuous
                               vv
clus                            R0 R1 RX
  DEL PEAK 10(8P21.3) MUTATED    6 11  1
  DEL PEAK 10(8P21.3) WILD-TYPE 37 13  1
D25V11, multiclass
    clus
vv   DEL PEAK 10(8P21.3) MUTATED DEL PEAK 10(8P21.3) WILD-TYPE
  R0                           6                            37
  R1                          11                            13
  RX                           1                             1
D25V12, continuous

Clustering(26) Variable = DEL PEAK 11(8Q12.1) MUTATION ANALYSIS
D26V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 11(8Q12.1) MUTATED    5  1
  DEL PEAK 11(8Q12.1) WILD-TYPE 35 28
  DEL PEAK 11(8Q12.1) MUTATED DEL PEAK 11(8Q12.1) WILD-TYPE 
                            6                            63 
  DEL PEAK 11(8Q12.1) MUTATED DEL PEAK 11(8Q12.1) WILD-TYPE 
                            1                            28 
$`DEL PEAK 11(8Q12.1) MUTATED`
TCGA-FB-A7DR TCGA-HZ-7925 TCGA-HZ-8636 TCGA-HZ-A4BK TCGA-IB-7647 TCGA-OE-A75W 
        5.46        11.87         0.16         1.51        21.90         3.62 

$`DEL PEAK 11(8Q12.1) WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FZ-5920 TCGA-FZ-5922 
        0.13        12.66         2.47         0.03         2.01        36.20 
TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 
       20.81        12.89         7.66        13.02         7.89         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7926 TCGA-HZ-8001 
        0.66         0.13         0.26        12.13         0.26         0.62 
TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 
        0.79         0.69         3.95         0.92         0.53         0.10 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-IB-7644 TCGA-IB-7645 
        2.99         0.76         0.95         6.38        11.41        49.38 
TCGA-IB-7646 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 
        4.77        15.35        19.82        15.65        27.98         4.04 
TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 
        3.62        43.79        15.81        19.66        16.04         3.85 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ 
       15.98         0.56        17.16        10.82         9.86         7.20 
TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-PZ-A5RE TCGA-Q3-A5QY 
       15.12         0.26         1.35         4.18         8.12        13.68 
TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       16.80        14.14        18.67 

  DEL PEAK 11(8Q12.1) MUTATED DEL PEAK 11(8Q12.1) WILD-TYPE 
                         0.16                          0.03 
  DEL PEAK 11(8Q12.1) MUTATED DEL PEAK 11(8Q12.1) WILD-TYPE 
                        21.90                         49.38 
  DEL PEAK 11(8Q12.1) MUTATED DEL PEAK 11(8Q12.1) WILD-TYPE 
                         4.54                          7.66 
[1] "0.2 - 21.9 (4.5)" "0.0 - 49.4 (7.7)"
                   TCGA-F2-6879                    TCGA-F2-6880 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-FB-A5VM                    TCGA-FB-A78T 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-FB-A7DR                    TCGA-FZ-5920 
  "DEL PEAK 11(8Q12.1) MUTATED" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-FZ-5922                    TCGA-FZ-5923 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-H8-A6C1                    TCGA-HZ-7289 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-HZ-7918                    TCGA-HZ-7919 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-HZ-7922                    TCGA-HZ-7923 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-HZ-7924                    TCGA-HZ-7925 
"DEL PEAK 11(8Q12.1) WILD-TYPE"   "DEL PEAK 11(8Q12.1) MUTATED" 
                   TCGA-HZ-7926                    TCGA-HZ-8001 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-HZ-8002                    TCGA-HZ-8003 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-HZ-8005                    TCGA-HZ-8315 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-HZ-8317                    TCGA-HZ-8519 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-HZ-8636                    TCGA-HZ-8638 
  "DEL PEAK 11(8Q12.1) MUTATED" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-HZ-A49G                    TCGA-HZ-A49H 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-HZ-A4BH                    TCGA-HZ-A4BK 
"DEL PEAK 11(8Q12.1) WILD-TYPE"   "DEL PEAK 11(8Q12.1) MUTATED" 
                   TCGA-IB-7644                    TCGA-IB-7645 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-IB-7646                    TCGA-IB-7647 
"DEL PEAK 11(8Q12.1) WILD-TYPE"   "DEL PEAK 11(8Q12.1) MUTATED" 
                   TCGA-IB-7649                    TCGA-IB-7651 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-IB-7652                    TCGA-IB-7885 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-IB-7886                    TCGA-IB-7887 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-IB-7888                    TCGA-IB-7889 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-IB-7890                    TCGA-IB-7891 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-IB-7893                    TCGA-IB-7897 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-IB-8126                    TCGA-IB-8127 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-IB-A5SO                    TCGA-IB-A5SP 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-IB-A5SQ                    TCGA-IB-A5SS 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-IB-A5ST                    TCGA-IB-A6UG 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-LB-A7SX                    TCGA-OE-A75W 
"DEL PEAK 11(8Q12.1) WILD-TYPE"   "DEL PEAK 11(8Q12.1) MUTATED" 
                   TCGA-PZ-A5RE                    TCGA-Q3-A5QY 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-US-A779                    TCGA-US-A77E 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-US-A77J 
"DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-F2-6879                    TCGA-F2-6880 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-FB-A5VM                    TCGA-FB-A78T 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-FB-A7DR                    TCGA-FZ-5920 
  "DEL PEAK 11(8Q12.1) MUTATED" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-FZ-5922                    TCGA-FZ-5923 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-H8-A6C1                    TCGA-HZ-7289 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-HZ-7918                    TCGA-HZ-7919 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-HZ-7922                    TCGA-HZ-7923 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-HZ-7924                    TCGA-HZ-7925 
"DEL PEAK 11(8Q12.1) WILD-TYPE"   "DEL PEAK 11(8Q12.1) MUTATED" 
                   TCGA-HZ-7926                    TCGA-HZ-8001 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-HZ-8002                    TCGA-HZ-8003 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-HZ-8005                    TCGA-HZ-8315 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-HZ-8317                    TCGA-HZ-8519 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-HZ-8636                    TCGA-HZ-8638 
  "DEL PEAK 11(8Q12.1) MUTATED" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-HZ-A49G                    TCGA-HZ-A49H 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-HZ-A4BH                    TCGA-HZ-A4BK 
"DEL PEAK 11(8Q12.1) WILD-TYPE"   "DEL PEAK 11(8Q12.1) MUTATED" 
                   TCGA-IB-7644                    TCGA-IB-7645 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-IB-7646                    TCGA-IB-7647 
"DEL PEAK 11(8Q12.1) WILD-TYPE"   "DEL PEAK 11(8Q12.1) MUTATED" 
                   TCGA-IB-7649                    TCGA-IB-7651 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-IB-7652                    TCGA-IB-7885 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-IB-7886                    TCGA-IB-7887 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-IB-7888                    TCGA-IB-7889 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-IB-7890                    TCGA-IB-7891 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-IB-7893                    TCGA-IB-7897 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-IB-8126                    TCGA-IB-8127 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-IB-A5SO                    TCGA-IB-A5SP 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-IB-A5SQ                    TCGA-IB-A5SS 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-IB-A5ST                    TCGA-IB-A6UG 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-LB-A7SX                    TCGA-OE-A75W 
"DEL PEAK 11(8Q12.1) WILD-TYPE"   "DEL PEAK 11(8Q12.1) MUTATED" 
                   TCGA-PZ-A5RE                    TCGA-Q3-A5QY 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-US-A779                    TCGA-US-A77E 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-US-A77J 
"DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-F2-6879                    TCGA-F2-6880 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-FB-A5VM                    TCGA-FB-A78T 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-FB-A7DR                    TCGA-FZ-5920 
  "DEL PEAK 11(8Q12.1) MUTATED" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-FZ-5922                    TCGA-FZ-5923 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-H8-A6C1                    TCGA-HZ-7289 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-HZ-7918                    TCGA-HZ-7919 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-HZ-7922                    TCGA-HZ-7923 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-HZ-7924                    TCGA-HZ-7925 
"DEL PEAK 11(8Q12.1) WILD-TYPE"   "DEL PEAK 11(8Q12.1) MUTATED" 
                   TCGA-HZ-7926                    TCGA-HZ-8001 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-HZ-8002                    TCGA-HZ-8003 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-HZ-8005                    TCGA-HZ-8315 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-HZ-8317                    TCGA-HZ-8519 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-HZ-8636                    TCGA-HZ-8638 
  "DEL PEAK 11(8Q12.1) MUTATED" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-HZ-A49G                    TCGA-HZ-A49H 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-HZ-A4BH                    TCGA-HZ-A4BK 
"DEL PEAK 11(8Q12.1) WILD-TYPE"   "DEL PEAK 11(8Q12.1) MUTATED" 
                   TCGA-IB-7644                    TCGA-IB-7645 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-IB-7646                    TCGA-IB-7647 
"DEL PEAK 11(8Q12.1) WILD-TYPE"   "DEL PEAK 11(8Q12.1) MUTATED" 
                   TCGA-IB-7649                    TCGA-IB-7651 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-IB-7652                    TCGA-IB-7885 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-IB-7886                    TCGA-IB-7887 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-IB-7888                    TCGA-IB-7889 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-IB-7890                    TCGA-IB-7891 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-IB-7893                    TCGA-IB-7897 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-IB-8126                    TCGA-IB-8127 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-IB-A5SO                    TCGA-IB-A5SP 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-IB-A5SQ                    TCGA-IB-A5SS 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-IB-A5ST                    TCGA-IB-A6UG 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-LB-A7SX                    TCGA-OE-A75W 
"DEL PEAK 11(8Q12.1) WILD-TYPE"   "DEL PEAK 11(8Q12.1) MUTATED" 
                   TCGA-PZ-A5RE                    TCGA-Q3-A5QY 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-US-A779                    TCGA-US-A77E 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-US-A77J 
"DEL PEAK 11(8Q12.1) WILD-TYPE" 
[1] "hr=" "2.4"
D26V2, continuous
                               vv
clus                            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III
  DEL PEAK 11(8Q12.1) MUTATED          0        0         2         3         0
  DEL PEAK 11(8Q12.1) WILD-TYPE        2        4         9        47         2
                               vv
clus                            STAGE IV
  DEL PEAK 11(8Q12.1) MUTATED          1
  DEL PEAK 11(8Q12.1) WILD-TYPE        2
D26V3, multiclass
                               vv
clus                            T1+T2 T3+T4
  DEL PEAK 11(8Q12.1) MUTATED       0     6
  DEL PEAK 11(8Q12.1) WILD-TYPE     7    59
D26V4, multiclass
       clus
vv      DEL PEAK 11(8Q12.1) MUTATED DEL PEAK 11(8Q12.1) WILD-TYPE
  T1+T2                           0                             7
  T3+T4                           6                            59
D26V5, binary
                               cls
clus                             0  1
  DEL PEAK 11(8Q12.1) MUTATED    2  3
  DEL PEAK 11(8Q12.1) WILD-TYPE 16 50
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 11(8Q12.1) MUTATED      2    3
  DEL PEAK 11(8Q12.1) WILD-TYPE   16   50
   clus
vv  DEL PEAK 11(8Q12.1) MUTATED DEL PEAK 11(8Q12.1) WILD-TYPE
  0                           2                            16
  1                           3                            50
                               vv
clus                            M0 M1 MX
  DEL PEAK 11(8Q12.1) MUTATED    3  1  2
  DEL PEAK 11(8Q12.1) WILD-TYPE 36  2 28
D26V6, multiclass
    clus
vv   DEL PEAK 11(8Q12.1) MUTATED DEL PEAK 11(8Q12.1) WILD-TYPE
  M0                           3                            36
  M1                           1                             2
  MX                           2                            28
D26V7, binary
                               cls
clus                             0  1
  DEL PEAK 11(8Q12.1) MUTATED    2  4
  DEL PEAK 11(8Q12.1) WILD-TYPE 34 32
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 11(8Q12.1) MUTATED      2    4
  DEL PEAK 11(8Q12.1) WILD-TYPE   34   32
        clus
vv       DEL PEAK 11(8Q12.1) MUTATED DEL PEAK 11(8Q12.1) WILD-TYPE
  FEMALE                           2                            34
  MALE                             4                            32
                               vv
clus                            PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK 11(8Q12.1) MUTATED                                     4
  DEL PEAK 11(8Q12.1) WILD-TYPE                                  60
                               vv
clus                            PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK 11(8Q12.1) MUTATED                                       1
  DEL PEAK 11(8Q12.1) WILD-TYPE                                     4
                               vv
clus                            PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK 11(8Q12.1) MUTATED                                                  1
  DEL PEAK 11(8Q12.1) WILD-TYPE                                                1
D26V8, multiclass
                                                  clus
vv                                                 DEL PEAK 11(8Q12.1) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                        4
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                      1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                           1
                                                  clus
vv                                                 DEL PEAK 11(8Q12.1) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                         60
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                        4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                             1
D26V9, continuous
[1] "Remove cluster labels:"      "DEL PEAK 11(8Q12.1) MUTATED"
clus
  DEL PEAK 11(8Q12.1) MUTATED DEL PEAK 11(8Q12.1) WILD-TYPE 
                            2                            19 
                   TCGA-F2-6880                    TCGA-FB-A4P5 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-FB-A5VM                    TCGA-FB-A78T 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-H8-A6C1                    TCGA-IB-7644 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-IB-7649                    TCGA-IB-7651 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-IB-7887                    TCGA-IB-7891 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-IB-8126                    TCGA-IB-8127 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-IB-A5SS                    TCGA-IB-A6UG 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-LB-A7SX 
"DEL PEAK 11(8Q12.1) WILD-TYPE" 
D26V10, continuous
[1] "Remove cluster labels:"      "DEL PEAK 11(8Q12.1) MUTATED"
clus
  DEL PEAK 11(8Q12.1) MUTATED DEL PEAK 11(8Q12.1) WILD-TYPE 
                            2                            16 
                   TCGA-FB-A4P5                    TCGA-FB-A5VM 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-FB-A78T                    TCGA-H6-8124 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-H8-A6C1                    TCGA-IB-7644 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-IB-7649                    TCGA-IB-7651 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-IB-7891                    TCGA-IB-8126 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-IB-8127                    TCGA-IB-A5SS 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                   TCGA-IB-A6UG                    TCGA-LB-A7SX 
"DEL PEAK 11(8Q12.1) WILD-TYPE" "DEL PEAK 11(8Q12.1) WILD-TYPE" 
                               vv
clus                            R0 R1 RX
  DEL PEAK 11(8Q12.1) MUTATED    3  3  0
  DEL PEAK 11(8Q12.1) WILD-TYPE 40 21  2
D26V11, multiclass
    clus
vv   DEL PEAK 11(8Q12.1) MUTATED DEL PEAK 11(8Q12.1) WILD-TYPE
  R0                           3                            40
  R1                           3                            21
  RX                           0                             2
D26V12, continuous

Clustering(27) Variable = DEL PEAK 12(9P21.3) MUTATION ANALYSIS
D27V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 12(9P21.3) MUTATED   24 18
  DEL PEAK 12(9P21.3) WILD-TYPE 16 11
  DEL PEAK 12(9P21.3) MUTATED DEL PEAK 12(9P21.3) WILD-TYPE 
                           42                            27 
  DEL PEAK 12(9P21.3) MUTATED DEL PEAK 12(9P21.3) WILD-TYPE 
                           18                            11 
$`DEL PEAK 12(9P21.3) MUTATED`
TCGA-F2-6879 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T 
       10.98         5.03        19.27        12.66         2.47         0.03 
TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H8-A6C1 
        5.46         2.01        36.20        20.81        12.89        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7925 TCGA-HZ-8005 
        7.89         0.92         0.66         0.13        11.87         3.95 
TCGA-HZ-8315 TCGA-HZ-8636 TCGA-HZ-A49G TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        0.92         0.16         0.76         6.38         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 
       49.38         4.77        21.90        15.35        15.65        27.98 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7890 TCGA-IB-7893 TCGA-IB-8127 TCGA-IB-A5SP 
        4.04         3.62        19.66         3.85        17.16         9.86 
TCGA-IB-A5SS TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-US-A779 TCGA-US-A77E 
       15.12         4.18         3.62         8.12        16.80        14.14 

$`DEL PEAK 12(9P21.3) WILD-TYPE`
TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-FB-A4P5 TCGA-H6-A45N TCGA-HZ-7923 
        9.70        11.84         7.10         0.13         7.66         0.26 
TCGA-HZ-7924 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8317 
       12.13         0.26         0.62         0.79         0.69         0.53 
TCGA-HZ-8519 TCGA-HZ-8638 TCGA-HZ-A49H TCGA-IB-7651 TCGA-IB-7888 TCGA-IB-7889 
        0.10         2.99         0.95        19.82        43.79        15.81 
TCGA-IB-7891 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-A5SO TCGA-IB-A5SQ TCGA-IB-A5ST 
       16.04        15.98         0.56        10.82         7.20         0.26 
TCGA-IB-A6UG TCGA-Q3-A5QY TCGA-US-A77J 
        1.35        13.68        18.67 

  DEL PEAK 12(9P21.3) MUTATED DEL PEAK 12(9P21.3) WILD-TYPE 
                         0.03                          0.10 
  DEL PEAK 12(9P21.3) MUTATED DEL PEAK 12(9P21.3) WILD-TYPE 
                        49.38                         43.79 
  DEL PEAK 12(9P21.3) MUTATED DEL PEAK 12(9P21.3) WILD-TYPE 
                        8.005                         7.100 
[1] "0.0 - 49.4 (8.0)" "0.1 - 43.8 (7.1)"
                   TCGA-F2-6879                    TCGA-F2-6880 
  "DEL PEAK 12(9P21.3) MUTATED" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
  "DEL PEAK 12(9P21.3) MUTATED"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"DEL PEAK 12(9P21.3) WILD-TYPE"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-FB-A5VM                    TCGA-FB-A78T 
  "DEL PEAK 12(9P21.3) MUTATED"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-FB-A7DR                    TCGA-FZ-5920 
  "DEL PEAK 12(9P21.3) MUTATED"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-FZ-5922                    TCGA-FZ-5923 
  "DEL PEAK 12(9P21.3) MUTATED"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
  "DEL PEAK 12(9P21.3) MUTATED" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-H8-A6C1                    TCGA-HZ-7289 
  "DEL PEAK 12(9P21.3) MUTATED"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-HZ-7918                    TCGA-HZ-7919 
  "DEL PEAK 12(9P21.3) MUTATED"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-HZ-7922                    TCGA-HZ-7923 
  "DEL PEAK 12(9P21.3) MUTATED" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-HZ-7924                    TCGA-HZ-7925 
"DEL PEAK 12(9P21.3) WILD-TYPE"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-HZ-7926                    TCGA-HZ-8001 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-HZ-8002                    TCGA-HZ-8003 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-HZ-8005                    TCGA-HZ-8315 
  "DEL PEAK 12(9P21.3) MUTATED"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-HZ-8317                    TCGA-HZ-8519 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-HZ-8636                    TCGA-HZ-8638 
  "DEL PEAK 12(9P21.3) MUTATED" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-HZ-A49G                    TCGA-HZ-A49H 
  "DEL PEAK 12(9P21.3) MUTATED" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-HZ-A4BH                    TCGA-HZ-A4BK 
  "DEL PEAK 12(9P21.3) MUTATED"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-IB-7644                    TCGA-IB-7645 
  "DEL PEAK 12(9P21.3) MUTATED"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-IB-7646                    TCGA-IB-7647 
  "DEL PEAK 12(9P21.3) MUTATED"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-IB-7649                    TCGA-IB-7651 
  "DEL PEAK 12(9P21.3) MUTATED" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-IB-7652                    TCGA-IB-7885 
  "DEL PEAK 12(9P21.3) MUTATED"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-IB-7886                    TCGA-IB-7887 
  "DEL PEAK 12(9P21.3) MUTATED"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-IB-7888                    TCGA-IB-7889 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-IB-7890                    TCGA-IB-7891 
  "DEL PEAK 12(9P21.3) MUTATED" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-IB-7893                    TCGA-IB-7897 
  "DEL PEAK 12(9P21.3) MUTATED" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-IB-8126                    TCGA-IB-8127 
"DEL PEAK 12(9P21.3) WILD-TYPE"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-IB-A5SO                    TCGA-IB-A5SP 
"DEL PEAK 12(9P21.3) WILD-TYPE"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-IB-A5SQ                    TCGA-IB-A5SS 
"DEL PEAK 12(9P21.3) WILD-TYPE"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-IB-A5ST                    TCGA-IB-A6UG 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-LB-A7SX                    TCGA-OE-A75W 
  "DEL PEAK 12(9P21.3) MUTATED"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-PZ-A5RE                    TCGA-Q3-A5QY 
  "DEL PEAK 12(9P21.3) MUTATED" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-US-A779                    TCGA-US-A77E 
  "DEL PEAK 12(9P21.3) MUTATED"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-US-A77J 
"DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-F2-6879                    TCGA-F2-6880 
  "DEL PEAK 12(9P21.3) MUTATED" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
  "DEL PEAK 12(9P21.3) MUTATED"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"DEL PEAK 12(9P21.3) WILD-TYPE"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-FB-A5VM                    TCGA-FB-A78T 
  "DEL PEAK 12(9P21.3) MUTATED"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-FB-A7DR                    TCGA-FZ-5920 
  "DEL PEAK 12(9P21.3) MUTATED"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-FZ-5922                    TCGA-FZ-5923 
  "DEL PEAK 12(9P21.3) MUTATED"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
  "DEL PEAK 12(9P21.3) MUTATED" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-H8-A6C1                    TCGA-HZ-7289 
  "DEL PEAK 12(9P21.3) MUTATED"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-HZ-7918                    TCGA-HZ-7919 
  "DEL PEAK 12(9P21.3) MUTATED"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-HZ-7922                    TCGA-HZ-7923 
  "DEL PEAK 12(9P21.3) MUTATED" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-HZ-7924                    TCGA-HZ-7925 
"DEL PEAK 12(9P21.3) WILD-TYPE"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-HZ-7926                    TCGA-HZ-8001 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-HZ-8002                    TCGA-HZ-8003 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-HZ-8005                    TCGA-HZ-8315 
  "DEL PEAK 12(9P21.3) MUTATED"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-HZ-8317                    TCGA-HZ-8519 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-HZ-8636                    TCGA-HZ-8638 
  "DEL PEAK 12(9P21.3) MUTATED" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-HZ-A49G                    TCGA-HZ-A49H 
  "DEL PEAK 12(9P21.3) MUTATED" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-HZ-A4BH                    TCGA-HZ-A4BK 
  "DEL PEAK 12(9P21.3) MUTATED"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-IB-7644                    TCGA-IB-7645 
  "DEL PEAK 12(9P21.3) MUTATED"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-IB-7646                    TCGA-IB-7647 
  "DEL PEAK 12(9P21.3) MUTATED"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-IB-7649                    TCGA-IB-7651 
  "DEL PEAK 12(9P21.3) MUTATED" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-IB-7652                    TCGA-IB-7885 
  "DEL PEAK 12(9P21.3) MUTATED"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-IB-7886                    TCGA-IB-7887 
  "DEL PEAK 12(9P21.3) MUTATED"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-IB-7888                    TCGA-IB-7889 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-IB-7890                    TCGA-IB-7891 
  "DEL PEAK 12(9P21.3) MUTATED" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-IB-7893                    TCGA-IB-7897 
  "DEL PEAK 12(9P21.3) MUTATED" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-IB-8126                    TCGA-IB-8127 
"DEL PEAK 12(9P21.3) WILD-TYPE"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-IB-A5SO                    TCGA-IB-A5SP 
"DEL PEAK 12(9P21.3) WILD-TYPE"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-IB-A5SQ                    TCGA-IB-A5SS 
"DEL PEAK 12(9P21.3) WILD-TYPE"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-IB-A5ST                    TCGA-IB-A6UG 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-LB-A7SX                    TCGA-OE-A75W 
  "DEL PEAK 12(9P21.3) MUTATED"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-PZ-A5RE                    TCGA-Q3-A5QY 
  "DEL PEAK 12(9P21.3) MUTATED" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-US-A779                    TCGA-US-A77E 
  "DEL PEAK 12(9P21.3) MUTATED"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-US-A77J 
"DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-F2-6879                    TCGA-F2-6880 
  "DEL PEAK 12(9P21.3) MUTATED" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
  "DEL PEAK 12(9P21.3) MUTATED"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"DEL PEAK 12(9P21.3) WILD-TYPE"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-FB-A5VM                    TCGA-FB-A78T 
  "DEL PEAK 12(9P21.3) MUTATED"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-FB-A7DR                    TCGA-FZ-5920 
  "DEL PEAK 12(9P21.3) MUTATED"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-FZ-5922                    TCGA-FZ-5923 
  "DEL PEAK 12(9P21.3) MUTATED"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
  "DEL PEAK 12(9P21.3) MUTATED" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-H8-A6C1                    TCGA-HZ-7289 
  "DEL PEAK 12(9P21.3) MUTATED"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-HZ-7918                    TCGA-HZ-7919 
  "DEL PEAK 12(9P21.3) MUTATED"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-HZ-7922                    TCGA-HZ-7923 
  "DEL PEAK 12(9P21.3) MUTATED" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-HZ-7924                    TCGA-HZ-7925 
"DEL PEAK 12(9P21.3) WILD-TYPE"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-HZ-7926                    TCGA-HZ-8001 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-HZ-8002                    TCGA-HZ-8003 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-HZ-8005                    TCGA-HZ-8315 
  "DEL PEAK 12(9P21.3) MUTATED"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-HZ-8317                    TCGA-HZ-8519 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-HZ-8636                    TCGA-HZ-8638 
  "DEL PEAK 12(9P21.3) MUTATED" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-HZ-A49G                    TCGA-HZ-A49H 
  "DEL PEAK 12(9P21.3) MUTATED" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-HZ-A4BH                    TCGA-HZ-A4BK 
  "DEL PEAK 12(9P21.3) MUTATED"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-IB-7644                    TCGA-IB-7645 
  "DEL PEAK 12(9P21.3) MUTATED"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-IB-7646                    TCGA-IB-7647 
  "DEL PEAK 12(9P21.3) MUTATED"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-IB-7649                    TCGA-IB-7651 
  "DEL PEAK 12(9P21.3) MUTATED" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-IB-7652                    TCGA-IB-7885 
  "DEL PEAK 12(9P21.3) MUTATED"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-IB-7886                    TCGA-IB-7887 
  "DEL PEAK 12(9P21.3) MUTATED"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-IB-7888                    TCGA-IB-7889 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-IB-7890                    TCGA-IB-7891 
  "DEL PEAK 12(9P21.3) MUTATED" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-IB-7893                    TCGA-IB-7897 
  "DEL PEAK 12(9P21.3) MUTATED" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-IB-8126                    TCGA-IB-8127 
"DEL PEAK 12(9P21.3) WILD-TYPE"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-IB-A5SO                    TCGA-IB-A5SP 
"DEL PEAK 12(9P21.3) WILD-TYPE"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-IB-A5SQ                    TCGA-IB-A5SS 
"DEL PEAK 12(9P21.3) WILD-TYPE"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-IB-A5ST                    TCGA-IB-A6UG 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-LB-A7SX                    TCGA-OE-A75W 
  "DEL PEAK 12(9P21.3) MUTATED"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-PZ-A5RE                    TCGA-Q3-A5QY 
  "DEL PEAK 12(9P21.3) MUTATED" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-US-A779                    TCGA-US-A77E 
  "DEL PEAK 12(9P21.3) MUTATED"   "DEL PEAK 12(9P21.3) MUTATED" 
                   TCGA-US-A77J 
"DEL PEAK 12(9P21.3) WILD-TYPE" 
[1] "hr=" "1.3"
D27V2, continuous
                               vv
clus                            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III
  DEL PEAK 12(9P21.3) MUTATED          0        2         8        31         0
  DEL PEAK 12(9P21.3) WILD-TYPE        2        2         3        19         2
                               vv
clus                            STAGE IV
  DEL PEAK 12(9P21.3) MUTATED          3
  DEL PEAK 12(9P21.3) WILD-TYPE        0
D27V3, multiclass
                               vv
clus                            T1+T2 T3+T4
  DEL PEAK 12(9P21.3) MUTATED       3    41
  DEL PEAK 12(9P21.3) WILD-TYPE     4    24
D27V4, multiclass
       clus
vv      DEL PEAK 12(9P21.3) MUTATED DEL PEAK 12(9P21.3) WILD-TYPE
  T1+T2                           3                             4
  T3+T4                          41                            24
D27V5, binary
                               cls
clus                             0  1
  DEL PEAK 12(9P21.3) MUTATED   10 33
  DEL PEAK 12(9P21.3) WILD-TYPE  8 20
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 12(9P21.3) MUTATED     10   33
  DEL PEAK 12(9P21.3) WILD-TYPE    8   20
   clus
vv  DEL PEAK 12(9P21.3) MUTATED DEL PEAK 12(9P21.3) WILD-TYPE
  0                          10                             8
  1                          33                            20
                               vv
clus                            M0 M1 MX
  DEL PEAK 12(9P21.3) MUTATED   26  3 15
  DEL PEAK 12(9P21.3) WILD-TYPE 13  0 15
D27V6, multiclass
    clus
vv   DEL PEAK 12(9P21.3) MUTATED DEL PEAK 12(9P21.3) WILD-TYPE
  M0                          26                            13
  M1                           3                             0
  MX                          15                            15
D27V7, binary
                               cls
clus                             0  1
  DEL PEAK 12(9P21.3) MUTATED   21 23
  DEL PEAK 12(9P21.3) WILD-TYPE 15 13
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 12(9P21.3) MUTATED     21   23
  DEL PEAK 12(9P21.3) WILD-TYPE   15   13
        clus
vv       DEL PEAK 12(9P21.3) MUTATED DEL PEAK 12(9P21.3) WILD-TYPE
  FEMALE                          21                            15
  MALE                            23                            13
                               vv
clus                            PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK 12(9P21.3) MUTATED                                    39
  DEL PEAK 12(9P21.3) WILD-TYPE                                  25
                               vv
clus                            PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK 12(9P21.3) MUTATED                                       3
  DEL PEAK 12(9P21.3) WILD-TYPE                                     2
                               vv
clus                            PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK 12(9P21.3) MUTATED                                                  1
  DEL PEAK 12(9P21.3) WILD-TYPE                                                1
D27V8, multiclass
                                                  clus
vv                                                 DEL PEAK 12(9P21.3) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                       39
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                      3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                           1
                                                  clus
vv                                                 DEL PEAK 12(9P21.3) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                         25
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                        2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                             1
D27V9, continuous
D27V10, continuous
                               vv
clus                            R0 R1 RX
  DEL PEAK 12(9P21.3) MUTATED   21 20  1
  DEL PEAK 12(9P21.3) WILD-TYPE 22  4  1
D27V11, multiclass
    clus
vv   DEL PEAK 12(9P21.3) MUTATED DEL PEAK 12(9P21.3) WILD-TYPE
  R0                          21                            22
  R1                          20                             4
  RX                           1                             1
D27V12, continuous

Clustering(28) Variable = DEL PEAK 13(9Q22.33) MUTATION ANALYSIS
D28V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 13(9Q22.33) MUTATED    9  7
  DEL PEAK 13(9Q22.33) WILD-TYPE 31 22
  DEL PEAK 13(9Q22.33) MUTATED DEL PEAK 13(9Q22.33) WILD-TYPE 
                            16                             53 
  DEL PEAK 13(9Q22.33) MUTATED DEL PEAK 13(9Q22.33) WILD-TYPE 
                             7                             22 
$`DEL PEAK 13(9Q22.33) MUTATED`
TCGA-F2-A44G TCGA-F2-A44H TCGA-FZ-5922 TCGA-H6-8124 TCGA-H8-A6C1 TCGA-HZ-7918 
        5.03        19.27        36.20        12.89        13.02         0.92 
TCGA-HZ-7922 TCGA-HZ-8005 TCGA-HZ-A49G TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7645 
        0.13         3.95         0.76         6.38         1.51        49.38 
TCGA-IB-7649 TCGA-IB-7893 TCGA-LB-A7SX TCGA-US-A779 
       15.35         3.85         4.18        16.80 

$`DEL PEAK 13(9Q22.33) WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-FB-A4P5 TCGA-FB-A545 
       10.98         9.70        11.84         7.10         0.13        12.66 
TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5923 TCGA-H6-A45N 
        2.47         0.03         5.46         2.01        20.81         7.66 
TCGA-HZ-7289 TCGA-HZ-7919 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        7.89         0.66         0.26        12.13        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 
        0.62         0.79         0.69         0.92         0.53         0.10 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49H TCGA-IB-7644 TCGA-IB-7646 TCGA-IB-7647 
        0.16         2.99         0.95        11.41         4.77        21.90 
TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 
       19.82        15.65        27.98         4.04         3.62        43.79 
TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 
       15.81        19.66        16.04        15.98         0.56        17.16 
TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG 
       10.82         9.86         7.20        15.12         0.26         1.35 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A77E TCGA-US-A77J 
        3.62         8.12        13.68        14.14        18.67 

  DEL PEAK 13(9Q22.33) MUTATED DEL PEAK 13(9Q22.33) WILD-TYPE 
                          0.13                           0.03 
  DEL PEAK 13(9Q22.33) MUTATED DEL PEAK 13(9Q22.33) WILD-TYPE 
                         49.38                          43.79 
  DEL PEAK 13(9Q22.33) MUTATED DEL PEAK 13(9Q22.33) WILD-TYPE 
                         5.705                          7.660 
[1] "0.1 - 49.4 (5.7)" "0.0 - 43.8 (7.7)"
                    TCGA-F2-6879                     TCGA-F2-6880 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
  "DEL PEAK 13(9Q22.33) MUTATED"   "DEL PEAK 13(9Q22.33) MUTATED" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-FB-A5VM                     TCGA-FB-A78T 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-FB-A7DR                     TCGA-FZ-5920 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-FZ-5922                     TCGA-FZ-5923 
  "DEL PEAK 13(9Q22.33) MUTATED" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
  "DEL PEAK 13(9Q22.33) MUTATED" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-H8-A6C1                     TCGA-HZ-7289 
  "DEL PEAK 13(9Q22.33) MUTATED" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-HZ-7918                     TCGA-HZ-7919 
  "DEL PEAK 13(9Q22.33) MUTATED" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-HZ-7922                     TCGA-HZ-7923 
  "DEL PEAK 13(9Q22.33) MUTATED" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-HZ-7924                     TCGA-HZ-7925 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-HZ-7926                     TCGA-HZ-8001 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-HZ-8002                     TCGA-HZ-8003 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-HZ-8005                     TCGA-HZ-8315 
  "DEL PEAK 13(9Q22.33) MUTATED" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-HZ-8317                     TCGA-HZ-8519 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-HZ-8636                     TCGA-HZ-8638 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-HZ-A49G                     TCGA-HZ-A49H 
  "DEL PEAK 13(9Q22.33) MUTATED" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-HZ-A4BH                     TCGA-HZ-A4BK 
  "DEL PEAK 13(9Q22.33) MUTATED"   "DEL PEAK 13(9Q22.33) MUTATED" 
                    TCGA-IB-7644                     TCGA-IB-7645 
"DEL PEAK 13(9Q22.33) WILD-TYPE"   "DEL PEAK 13(9Q22.33) MUTATED" 
                    TCGA-IB-7646                     TCGA-IB-7647 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-IB-7649                     TCGA-IB-7651 
  "DEL PEAK 13(9Q22.33) MUTATED" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-IB-7652                     TCGA-IB-7885 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-IB-7886                     TCGA-IB-7887 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-IB-7888                     TCGA-IB-7889 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-IB-7890                     TCGA-IB-7891 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-IB-7893                     TCGA-IB-7897 
  "DEL PEAK 13(9Q22.33) MUTATED" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-IB-8126                     TCGA-IB-8127 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-IB-A5SO                     TCGA-IB-A5SP 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-IB-A5SQ                     TCGA-IB-A5SS 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-IB-A5ST                     TCGA-IB-A6UG 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-LB-A7SX                     TCGA-OE-A75W 
  "DEL PEAK 13(9Q22.33) MUTATED" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-PZ-A5RE                     TCGA-Q3-A5QY 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-US-A779                     TCGA-US-A77E 
  "DEL PEAK 13(9Q22.33) MUTATED" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-US-A77J 
"DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-F2-6879                     TCGA-F2-6880 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
  "DEL PEAK 13(9Q22.33) MUTATED"   "DEL PEAK 13(9Q22.33) MUTATED" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-FB-A5VM                     TCGA-FB-A78T 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-FB-A7DR                     TCGA-FZ-5920 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-FZ-5922                     TCGA-FZ-5923 
  "DEL PEAK 13(9Q22.33) MUTATED" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
  "DEL PEAK 13(9Q22.33) MUTATED" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-H8-A6C1                     TCGA-HZ-7289 
  "DEL PEAK 13(9Q22.33) MUTATED" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-HZ-7918                     TCGA-HZ-7919 
  "DEL PEAK 13(9Q22.33) MUTATED" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-HZ-7922                     TCGA-HZ-7923 
  "DEL PEAK 13(9Q22.33) MUTATED" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-HZ-7924                     TCGA-HZ-7925 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-HZ-7926                     TCGA-HZ-8001 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-HZ-8002                     TCGA-HZ-8003 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-HZ-8005                     TCGA-HZ-8315 
  "DEL PEAK 13(9Q22.33) MUTATED" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-HZ-8317                     TCGA-HZ-8519 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-HZ-8636                     TCGA-HZ-8638 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-HZ-A49G                     TCGA-HZ-A49H 
  "DEL PEAK 13(9Q22.33) MUTATED" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-HZ-A4BH                     TCGA-HZ-A4BK 
  "DEL PEAK 13(9Q22.33) MUTATED"   "DEL PEAK 13(9Q22.33) MUTATED" 
                    TCGA-IB-7644                     TCGA-IB-7645 
"DEL PEAK 13(9Q22.33) WILD-TYPE"   "DEL PEAK 13(9Q22.33) MUTATED" 
                    TCGA-IB-7646                     TCGA-IB-7647 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-IB-7649                     TCGA-IB-7651 
  "DEL PEAK 13(9Q22.33) MUTATED" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-IB-7652                     TCGA-IB-7885 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-IB-7886                     TCGA-IB-7887 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-IB-7888                     TCGA-IB-7889 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-IB-7890                     TCGA-IB-7891 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-IB-7893                     TCGA-IB-7897 
  "DEL PEAK 13(9Q22.33) MUTATED" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-IB-8126                     TCGA-IB-8127 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-IB-A5SO                     TCGA-IB-A5SP 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-IB-A5SQ                     TCGA-IB-A5SS 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-IB-A5ST                     TCGA-IB-A6UG 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-LB-A7SX                     TCGA-OE-A75W 
  "DEL PEAK 13(9Q22.33) MUTATED" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-PZ-A5RE                     TCGA-Q3-A5QY 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-US-A779                     TCGA-US-A77E 
  "DEL PEAK 13(9Q22.33) MUTATED" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-US-A77J 
"DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-F2-6879                     TCGA-F2-6880 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
  "DEL PEAK 13(9Q22.33) MUTATED"   "DEL PEAK 13(9Q22.33) MUTATED" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-FB-A5VM                     TCGA-FB-A78T 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-FB-A7DR                     TCGA-FZ-5920 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-FZ-5922                     TCGA-FZ-5923 
  "DEL PEAK 13(9Q22.33) MUTATED" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
  "DEL PEAK 13(9Q22.33) MUTATED" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-H8-A6C1                     TCGA-HZ-7289 
  "DEL PEAK 13(9Q22.33) MUTATED" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-HZ-7918                     TCGA-HZ-7919 
  "DEL PEAK 13(9Q22.33) MUTATED" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-HZ-7922                     TCGA-HZ-7923 
  "DEL PEAK 13(9Q22.33) MUTATED" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-HZ-7924                     TCGA-HZ-7925 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-HZ-7926                     TCGA-HZ-8001 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-HZ-8002                     TCGA-HZ-8003 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-HZ-8005                     TCGA-HZ-8315 
  "DEL PEAK 13(9Q22.33) MUTATED" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-HZ-8317                     TCGA-HZ-8519 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-HZ-8636                     TCGA-HZ-8638 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-HZ-A49G                     TCGA-HZ-A49H 
  "DEL PEAK 13(9Q22.33) MUTATED" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-HZ-A4BH                     TCGA-HZ-A4BK 
  "DEL PEAK 13(9Q22.33) MUTATED"   "DEL PEAK 13(9Q22.33) MUTATED" 
                    TCGA-IB-7644                     TCGA-IB-7645 
"DEL PEAK 13(9Q22.33) WILD-TYPE"   "DEL PEAK 13(9Q22.33) MUTATED" 
                    TCGA-IB-7646                     TCGA-IB-7647 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-IB-7649                     TCGA-IB-7651 
  "DEL PEAK 13(9Q22.33) MUTATED" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-IB-7652                     TCGA-IB-7885 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-IB-7886                     TCGA-IB-7887 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-IB-7888                     TCGA-IB-7889 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-IB-7890                     TCGA-IB-7891 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-IB-7893                     TCGA-IB-7897 
  "DEL PEAK 13(9Q22.33) MUTATED" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-IB-8126                     TCGA-IB-8127 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-IB-A5SO                     TCGA-IB-A5SP 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-IB-A5SQ                     TCGA-IB-A5SS 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-IB-A5ST                     TCGA-IB-A6UG 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-LB-A7SX                     TCGA-OE-A75W 
  "DEL PEAK 13(9Q22.33) MUTATED" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-PZ-A5RE                     TCGA-Q3-A5QY 
"DEL PEAK 13(9Q22.33) WILD-TYPE" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-US-A779                     TCGA-US-A77E 
  "DEL PEAK 13(9Q22.33) MUTATED" "DEL PEAK 13(9Q22.33) WILD-TYPE" 
                    TCGA-US-A77J 
"DEL PEAK 13(9Q22.33) WILD-TYPE" 
[1] "hr=" "1.5"
D28V2, continuous
                                vv
clus                             STAGE IA STAGE IB STAGE IIA STAGE IIB
  DEL PEAK 13(9Q22.33) MUTATED          0        0         4        13
  DEL PEAK 13(9Q22.33) WILD-TYPE        2        4         7        37
                                vv
clus                             STAGE III STAGE IV
  DEL PEAK 13(9Q22.33) MUTATED           0        0
  DEL PEAK 13(9Q22.33) WILD-TYPE         2        3
D28V3, multiclass
                                vv
clus                             T1+T2 T3+T4
  DEL PEAK 13(9Q22.33) MUTATED       1    16
  DEL PEAK 13(9Q22.33) WILD-TYPE     6    49
D28V4, multiclass
       clus
vv      DEL PEAK 13(9Q22.33) MUTATED DEL PEAK 13(9Q22.33) WILD-TYPE
  T1+T2                            1                              6
  T3+T4                           16                             49
D28V5, binary
                                cls
clus                              0  1
  DEL PEAK 13(9Q22.33) MUTATED    4 13
  DEL PEAK 13(9Q22.33) WILD-TYPE 14 40
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 13(9Q22.33) MUTATED      4   13
  DEL PEAK 13(9Q22.33) WILD-TYPE   14   40
   clus
vv  DEL PEAK 13(9Q22.33) MUTATED DEL PEAK 13(9Q22.33) WILD-TYPE
  0                            4                             14
  1                           13                             40
                                vv
clus                             M0 M1 MX
  DEL PEAK 13(9Q22.33) MUTATED    8  0  9
  DEL PEAK 13(9Q22.33) WILD-TYPE 31  3 21
D28V6, multiclass
    clus
vv   DEL PEAK 13(9Q22.33) MUTATED DEL PEAK 13(9Q22.33) WILD-TYPE
  M0                            8                             31
  M1                            0                              3
  MX                            9                             21
D28V7, binary
                                cls
clus                              0  1
  DEL PEAK 13(9Q22.33) MUTATED    9  8
  DEL PEAK 13(9Q22.33) WILD-TYPE 27 28
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 13(9Q22.33) MUTATED      9    8
  DEL PEAK 13(9Q22.33) WILD-TYPE   27   28
        clus
vv       DEL PEAK 13(9Q22.33) MUTATED DEL PEAK 13(9Q22.33) WILD-TYPE
  FEMALE                            9                             27
  MALE                              8                             28
                                vv
clus                             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK 13(9Q22.33) MUTATED                                    15
  DEL PEAK 13(9Q22.33) WILD-TYPE                                  49
                                vv
clus                             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK 13(9Q22.33) MUTATED                                       2
  DEL PEAK 13(9Q22.33) WILD-TYPE                                     3
                                vv
clus                             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK 13(9Q22.33) MUTATED                                                  0
  DEL PEAK 13(9Q22.33) WILD-TYPE                                                2
D28V8, multiclass
                                                  clus
vv                                                 DEL PEAK 13(9Q22.33) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                        15
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                       2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                            0
                                                  clus
vv                                                 DEL PEAK 13(9Q22.33) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                          49
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                         3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                              2
D28V9, continuous
D28V10, continuous
                                vv
clus                             R0 R1 RX
  DEL PEAK 13(9Q22.33) MUTATED   10  7  0
  DEL PEAK 13(9Q22.33) WILD-TYPE 33 17  2
D28V11, multiclass
    clus
vv   DEL PEAK 13(9Q22.33) MUTATED DEL PEAK 13(9Q22.33) WILD-TYPE
  R0                           10                             33
  R1                            7                             17
  RX                            0                              2
D28V12, continuous

Clustering(29) Variable = DEL PEAK 14(9Q32) MUTATION ANALYSIS
D29V1, survival
                             sevent
clus2                          0  1
  DEL PEAK 14(9Q32) MUTATED    9  8
  DEL PEAK 14(9Q32) WILD-TYPE 31 21
  DEL PEAK 14(9Q32) MUTATED DEL PEAK 14(9Q32) WILD-TYPE 
                         17                          52 
  DEL PEAK 14(9Q32) MUTATED DEL PEAK 14(9Q32) WILD-TYPE 
                          8                          21 
$`DEL PEAK 14(9Q32) MUTATED`
TCGA-F2-A44G TCGA-F2-A44H TCGA-FZ-5922 TCGA-H6-8124 TCGA-H8-A6C1 TCGA-HZ-7918 
        5.03        19.27        36.20        12.89        13.02         0.92 
TCGA-HZ-7922 TCGA-HZ-8005 TCGA-HZ-A49G TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7645 
        0.13         3.95         0.76         6.38         1.51        49.38 
TCGA-IB-7646 TCGA-IB-7649 TCGA-IB-7893 TCGA-LB-A7SX TCGA-US-A779 
        4.77        15.35         3.85         4.18        16.80 

$`DEL PEAK 14(9Q32) WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-FB-A4P5 TCGA-FB-A545 
       10.98         9.70        11.84         7.10         0.13        12.66 
TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5923 TCGA-H6-A45N 
        2.47         0.03         5.46         2.01        20.81         7.66 
TCGA-HZ-7289 TCGA-HZ-7919 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        7.89         0.66         0.26        12.13        11.87         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 
        0.62         0.79         0.69         0.92         0.53         0.10 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49H TCGA-IB-7644 TCGA-IB-7647 TCGA-IB-7651 
        0.16         2.99         0.95        11.41        21.90        19.82 
TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 
       15.65        27.98         4.04         3.62        43.79        15.81 
TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO 
       19.66        16.04        15.98         0.56        17.16        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-OE-A75W 
        9.86         7.20        15.12         0.26         1.35         3.62 
TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A77E TCGA-US-A77J 
        8.12        13.68        14.14        18.67 

  DEL PEAK 14(9Q32) MUTATED DEL PEAK 14(9Q32) WILD-TYPE 
                       0.13                        0.03 
  DEL PEAK 14(9Q32) MUTATED DEL PEAK 14(9Q32) WILD-TYPE 
                      49.38                       43.79 
  DEL PEAK 14(9Q32) MUTATED DEL PEAK 14(9Q32) WILD-TYPE 
                      5.030                       7.775 
[1] "0.1 - 49.4 (5.0)" "0.0 - 43.8 (7.8)"
                 TCGA-F2-6879                  TCGA-F2-6880 
"DEL PEAK 14(9Q32) WILD-TYPE" "DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-F2-7273                  TCGA-F2-7276 
"DEL PEAK 14(9Q32) WILD-TYPE" "DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-F2-A44G                  TCGA-F2-A44H 
  "DEL PEAK 14(9Q32) MUTATED"   "DEL PEAK 14(9Q32) MUTATED" 
                 TCGA-FB-A4P5                  TCGA-FB-A545 
"DEL PEAK 14(9Q32) WILD-TYPE" "DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-FB-A5VM                  TCGA-FB-A78T 
"DEL PEAK 14(9Q32) WILD-TYPE" "DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-FB-A7DR                  TCGA-FZ-5920 
"DEL PEAK 14(9Q32) WILD-TYPE" "DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-FZ-5922                  TCGA-FZ-5923 
  "DEL PEAK 14(9Q32) MUTATED" "DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-H6-8124                  TCGA-H6-A45N 
  "DEL PEAK 14(9Q32) MUTATED" "DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-H8-A6C1                  TCGA-HZ-7289 
  "DEL PEAK 14(9Q32) MUTATED" "DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-HZ-7918                  TCGA-HZ-7919 
  "DEL PEAK 14(9Q32) MUTATED" "DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-HZ-7922                  TCGA-HZ-7923 
  "DEL PEAK 14(9Q32) MUTATED" "DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-HZ-7924                  TCGA-HZ-7925 
"DEL PEAK 14(9Q32) WILD-TYPE" "DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-HZ-7926                  TCGA-HZ-8001 
"DEL PEAK 14(9Q32) WILD-TYPE" "DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-HZ-8002                  TCGA-HZ-8003 
"DEL PEAK 14(9Q32) WILD-TYPE" "DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-HZ-8005                  TCGA-HZ-8315 
  "DEL PEAK 14(9Q32) MUTATED" "DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-HZ-8317                  TCGA-HZ-8519 
"DEL PEAK 14(9Q32) WILD-TYPE" "DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-HZ-8636                  TCGA-HZ-8638 
"DEL PEAK 14(9Q32) WILD-TYPE" "DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-HZ-A49G                  TCGA-HZ-A49H 
  "DEL PEAK 14(9Q32) MUTATED" "DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-HZ-A4BH                  TCGA-HZ-A4BK 
  "DEL PEAK 14(9Q32) MUTATED"   "DEL PEAK 14(9Q32) MUTATED" 
                 TCGA-IB-7644                  TCGA-IB-7645 
"DEL PEAK 14(9Q32) WILD-TYPE"   "DEL PEAK 14(9Q32) MUTATED" 
                 TCGA-IB-7646                  TCGA-IB-7647 
  "DEL PEAK 14(9Q32) MUTATED" "DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-IB-7649                  TCGA-IB-7651 
  "DEL PEAK 14(9Q32) MUTATED" "DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-IB-7652                  TCGA-IB-7885 
"DEL PEAK 14(9Q32) WILD-TYPE" "DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-IB-7886                  TCGA-IB-7887 
"DEL PEAK 14(9Q32) WILD-TYPE" "DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-IB-7888                  TCGA-IB-7889 
"DEL PEAK 14(9Q32) WILD-TYPE" "DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-IB-7890                  TCGA-IB-7891 
"DEL PEAK 14(9Q32) WILD-TYPE" "DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-IB-7893                  TCGA-IB-7897 
  "DEL PEAK 14(9Q32) MUTATED" "DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-IB-8126                  TCGA-IB-8127 
"DEL PEAK 14(9Q32) WILD-TYPE" "DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-IB-A5SO                  TCGA-IB-A5SP 
"DEL PEAK 14(9Q32) WILD-TYPE" "DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-IB-A5SQ                  TCGA-IB-A5SS 
"DEL PEAK 14(9Q32) WILD-TYPE" "DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-IB-A5ST                  TCGA-IB-A6UG 
"DEL PEAK 14(9Q32) WILD-TYPE" "DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-LB-A7SX                  TCGA-OE-A75W 
  "DEL PEAK 14(9Q32) MUTATED" "DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-PZ-A5RE                  TCGA-Q3-A5QY 
"DEL PEAK 14(9Q32) WILD-TYPE" "DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-US-A779                  TCGA-US-A77E 
  "DEL PEAK 14(9Q32) MUTATED" "DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-US-A77J 
"DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-F2-6879                  TCGA-F2-6880 
"DEL PEAK 14(9Q32) WILD-TYPE" "DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-F2-7273                  TCGA-F2-7276 
"DEL PEAK 14(9Q32) WILD-TYPE" "DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-F2-A44G                  TCGA-F2-A44H 
  "DEL PEAK 14(9Q32) MUTATED"   "DEL PEAK 14(9Q32) MUTATED" 
                 TCGA-FB-A4P5                  TCGA-FB-A545 
"DEL PEAK 14(9Q32) WILD-TYPE" "DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-FB-A5VM                  TCGA-FB-A78T 
"DEL PEAK 14(9Q32) WILD-TYPE" "DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-FB-A7DR                  TCGA-FZ-5920 
"DEL PEAK 14(9Q32) WILD-TYPE" "DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-FZ-5922                  TCGA-FZ-5923 
  "DEL PEAK 14(9Q32) MUTATED" "DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-H6-8124                  TCGA-H6-A45N 
  "DEL PEAK 14(9Q32) MUTATED" "DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-H8-A6C1                  TCGA-HZ-7289 
  "DEL PEAK 14(9Q32) MUTATED" "DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-HZ-7918                  TCGA-HZ-7919 
  "DEL PEAK 14(9Q32) MUTATED" "DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-HZ-7922                  TCGA-HZ-7923 
  "DEL PEAK 14(9Q32) MUTATED" "DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-HZ-7924                  TCGA-HZ-7925 
"DEL PEAK 14(9Q32) WILD-TYPE" "DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-HZ-7926                  TCGA-HZ-8001 
"DEL PEAK 14(9Q32) WILD-TYPE" "DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-HZ-8002                  TCGA-HZ-8003 
"DEL PEAK 14(9Q32) WILD-TYPE" "DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-HZ-8005                  TCGA-HZ-8315 
  "DEL PEAK 14(9Q32) MUTATED" "DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-HZ-8317                  TCGA-HZ-8519 
"DEL PEAK 14(9Q32) WILD-TYPE" "DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-HZ-8636                  TCGA-HZ-8638 
"DEL PEAK 14(9Q32) WILD-TYPE" "DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-HZ-A49G                  TCGA-HZ-A49H 
  "DEL PEAK 14(9Q32) MUTATED" "DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-HZ-A4BH                  TCGA-HZ-A4BK 
  "DEL PEAK 14(9Q32) MUTATED"   "DEL PEAK 14(9Q32) MUTATED" 
                 TCGA-IB-7644                  TCGA-IB-7645 
"DEL PEAK 14(9Q32) WILD-TYPE"   "DEL PEAK 14(9Q32) MUTATED" 
                 TCGA-IB-7646                  TCGA-IB-7647 
  "DEL PEAK 14(9Q32) MUTATED" "DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-IB-7649                  TCGA-IB-7651 
  "DEL PEAK 14(9Q32) MUTATED" "DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-IB-7652                  TCGA-IB-7885 
"DEL PEAK 14(9Q32) WILD-TYPE" "DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-IB-7886                  TCGA-IB-7887 
"DEL PEAK 14(9Q32) WILD-TYPE" "DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-IB-7888                  TCGA-IB-7889 
"DEL PEAK 14(9Q32) WILD-TYPE" "DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-IB-7890                  TCGA-IB-7891 
"DEL PEAK 14(9Q32) WILD-TYPE" "DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-IB-7893                  TCGA-IB-7897 
  "DEL PEAK 14(9Q32) MUTATED" "DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-IB-8126                  TCGA-IB-8127 
"DEL PEAK 14(9Q32) WILD-TYPE" "DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-IB-A5SO                  TCGA-IB-A5SP 
"DEL PEAK 14(9Q32) WILD-TYPE" "DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-IB-A5SQ                  TCGA-IB-A5SS 
"DEL PEAK 14(9Q32) WILD-TYPE" "DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-IB-A5ST                  TCGA-IB-A6UG 
"DEL PEAK 14(9Q32) WILD-TYPE" "DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-LB-A7SX                  TCGA-OE-A75W 
  "DEL PEAK 14(9Q32) MUTATED" "DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-PZ-A5RE                  TCGA-Q3-A5QY 
"DEL PEAK 14(9Q32) WILD-TYPE" "DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-US-A779                  TCGA-US-A77E 
  "DEL PEAK 14(9Q32) MUTATED" "DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-US-A77J 
"DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-F2-6879                  TCGA-F2-6880 
"DEL PEAK 14(9Q32) WILD-TYPE" "DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-F2-7273                  TCGA-F2-7276 
"DEL PEAK 14(9Q32) WILD-TYPE" "DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-F2-A44G                  TCGA-F2-A44H 
  "DEL PEAK 14(9Q32) MUTATED"   "DEL PEAK 14(9Q32) MUTATED" 
                 TCGA-FB-A4P5                  TCGA-FB-A545 
"DEL PEAK 14(9Q32) WILD-TYPE" "DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-FB-A5VM                  TCGA-FB-A78T 
"DEL PEAK 14(9Q32) WILD-TYPE" "DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-FB-A7DR                  TCGA-FZ-5920 
"DEL PEAK 14(9Q32) WILD-TYPE" "DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-FZ-5922                  TCGA-FZ-5923 
  "DEL PEAK 14(9Q32) MUTATED" "DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-H6-8124                  TCGA-H6-A45N 
  "DEL PEAK 14(9Q32) MUTATED" "DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-H8-A6C1                  TCGA-HZ-7289 
  "DEL PEAK 14(9Q32) MUTATED" "DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-HZ-7918                  TCGA-HZ-7919 
  "DEL PEAK 14(9Q32) MUTATED" "DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-HZ-7922                  TCGA-HZ-7923 
  "DEL PEAK 14(9Q32) MUTATED" "DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-HZ-7924                  TCGA-HZ-7925 
"DEL PEAK 14(9Q32) WILD-TYPE" "DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-HZ-7926                  TCGA-HZ-8001 
"DEL PEAK 14(9Q32) WILD-TYPE" "DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-HZ-8002                  TCGA-HZ-8003 
"DEL PEAK 14(9Q32) WILD-TYPE" "DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-HZ-8005                  TCGA-HZ-8315 
  "DEL PEAK 14(9Q32) MUTATED" "DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-HZ-8317                  TCGA-HZ-8519 
"DEL PEAK 14(9Q32) WILD-TYPE" "DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-HZ-8636                  TCGA-HZ-8638 
"DEL PEAK 14(9Q32) WILD-TYPE" "DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-HZ-A49G                  TCGA-HZ-A49H 
  "DEL PEAK 14(9Q32) MUTATED" "DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-HZ-A4BH                  TCGA-HZ-A4BK 
  "DEL PEAK 14(9Q32) MUTATED"   "DEL PEAK 14(9Q32) MUTATED" 
                 TCGA-IB-7644                  TCGA-IB-7645 
"DEL PEAK 14(9Q32) WILD-TYPE"   "DEL PEAK 14(9Q32) MUTATED" 
                 TCGA-IB-7646                  TCGA-IB-7647 
  "DEL PEAK 14(9Q32) MUTATED" "DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-IB-7649                  TCGA-IB-7651 
  "DEL PEAK 14(9Q32) MUTATED" "DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-IB-7652                  TCGA-IB-7885 
"DEL PEAK 14(9Q32) WILD-TYPE" "DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-IB-7886                  TCGA-IB-7887 
"DEL PEAK 14(9Q32) WILD-TYPE" "DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-IB-7888                  TCGA-IB-7889 
"DEL PEAK 14(9Q32) WILD-TYPE" "DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-IB-7890                  TCGA-IB-7891 
"DEL PEAK 14(9Q32) WILD-TYPE" "DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-IB-7893                  TCGA-IB-7897 
  "DEL PEAK 14(9Q32) MUTATED" "DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-IB-8126                  TCGA-IB-8127 
"DEL PEAK 14(9Q32) WILD-TYPE" "DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-IB-A5SO                  TCGA-IB-A5SP 
"DEL PEAK 14(9Q32) WILD-TYPE" "DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-IB-A5SQ                  TCGA-IB-A5SS 
"DEL PEAK 14(9Q32) WILD-TYPE" "DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-IB-A5ST                  TCGA-IB-A6UG 
"DEL PEAK 14(9Q32) WILD-TYPE" "DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-LB-A7SX                  TCGA-OE-A75W 
  "DEL PEAK 14(9Q32) MUTATED" "DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-PZ-A5RE                  TCGA-Q3-A5QY 
"DEL PEAK 14(9Q32) WILD-TYPE" "DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-US-A779                  TCGA-US-A77E 
  "DEL PEAK 14(9Q32) MUTATED" "DEL PEAK 14(9Q32) WILD-TYPE" 
                 TCGA-US-A77J 
"DEL PEAK 14(9Q32) WILD-TYPE" 
[1] "hr=" "1.3"
D29V2, continuous
                             vv
clus                          STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III
  DEL PEAK 14(9Q32) MUTATED          0        0         4        14         0
  DEL PEAK 14(9Q32) WILD-TYPE        2        4         7        36         2
                             vv
clus                          STAGE IV
  DEL PEAK 14(9Q32) MUTATED          0
  DEL PEAK 14(9Q32) WILD-TYPE        3
D29V3, multiclass
                             vv
clus                          T1+T2 T3+T4
  DEL PEAK 14(9Q32) MUTATED       1    17
  DEL PEAK 14(9Q32) WILD-TYPE     6    48
D29V4, multiclass
       clus
vv      DEL PEAK 14(9Q32) MUTATED DEL PEAK 14(9Q32) WILD-TYPE
  T1+T2                         1                           6
  T3+T4                        17                          48
D29V5, binary
                             cls
clus                           0  1
  DEL PEAK 14(9Q32) MUTATED    4 14
  DEL PEAK 14(9Q32) WILD-TYPE 14 39
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 14(9Q32) MUTATED      4   14
  DEL PEAK 14(9Q32) WILD-TYPE   14   39
   clus
vv  DEL PEAK 14(9Q32) MUTATED DEL PEAK 14(9Q32) WILD-TYPE
  0                         4                          14
  1                        14                          39
                             vv
clus                          M0 M1 MX
  DEL PEAK 14(9Q32) MUTATED    9  0  9
  DEL PEAK 14(9Q32) WILD-TYPE 30  3 21
D29V6, multiclass
    clus
vv   DEL PEAK 14(9Q32) MUTATED DEL PEAK 14(9Q32) WILD-TYPE
  M0                         9                          30
  M1                         0                           3
  MX                         9                          21
D29V7, binary
                             cls
clus                           0  1
  DEL PEAK 14(9Q32) MUTATED    9  9
  DEL PEAK 14(9Q32) WILD-TYPE 27 27
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 14(9Q32) MUTATED      9    9
  DEL PEAK 14(9Q32) WILD-TYPE   27   27
        clus
vv       DEL PEAK 14(9Q32) MUTATED DEL PEAK 14(9Q32) WILD-TYPE
  FEMALE                         9                          27
  MALE                           9                          27
                             vv
clus                          PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK 14(9Q32) MUTATED                                    16
  DEL PEAK 14(9Q32) WILD-TYPE                                  48
                             vv
clus                          PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK 14(9Q32) MUTATED                                       2
  DEL PEAK 14(9Q32) WILD-TYPE                                     3
                             vv
clus                          PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK 14(9Q32) MUTATED                                                  0
  DEL PEAK 14(9Q32) WILD-TYPE                                                2
D29V8, multiclass
                                                  clus
vv                                                 DEL PEAK 14(9Q32) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                     16
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                    2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                         0
                                                  clus
vv                                                 DEL PEAK 14(9Q32) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                       48
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                      3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                           2
D29V9, continuous
D29V10, continuous
                             vv
clus                          R0 R1 RX
  DEL PEAK 14(9Q32) MUTATED   10  8  0
  DEL PEAK 14(9Q32) WILD-TYPE 33 16  2
D29V11, multiclass
    clus
vv   DEL PEAK 14(9Q32) MUTATED DEL PEAK 14(9Q32) WILD-TYPE
  R0                        10                          33
  R1                         8                          16
  RX                         0                           2
D29V12, continuous

Clustering(30) Variable = DEL PEAK 15(10Q23.2) MUTATION ANALYSIS
D30V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 15(10Q23.2) MUTATED    5  5
  DEL PEAK 15(10Q23.2) WILD-TYPE 35 24
  DEL PEAK 15(10Q23.2) MUTATED DEL PEAK 15(10Q23.2) WILD-TYPE 
                            10                             59 
  DEL PEAK 15(10Q23.2) MUTATED DEL PEAK 15(10Q23.2) WILD-TYPE 
                             5                             24 
$`DEL PEAK 15(10Q23.2) MUTATED`
TCGA-FB-A545 TCGA-H6-8124 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-8005 TCGA-IB-7646 
       12.66        12.89         7.89         0.92         3.95         4.77 
TCGA-IB-7885 TCGA-IB-7887 TCGA-IB-7890 TCGA-IB-7893 
       27.98         3.62        19.66         3.85 

$`DEL PEAK 15(10Q23.2) WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 
        0.13         2.47         0.03         5.46         2.01        36.20 
TCGA-FZ-5923 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 
       20.81         7.66        13.02         0.66         0.13         0.26 
TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 
       12.13        11.87         0.26         0.62         0.79         0.69 
TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G 
        0.92         0.53         0.10         0.16         2.99         0.76 
TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7647 
        0.95         6.38         1.51        11.41        49.38        21.90 
TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7886 TCGA-IB-7888 TCGA-IB-7889 
       15.35        19.82        15.65         4.04        43.79        15.81 
TCGA-IB-7891 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
       16.04        15.98         0.56        17.16        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        7.20        15.12         0.26         1.35         4.18         3.62 
TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        8.12        13.68        16.80        14.14        18.67 

  DEL PEAK 15(10Q23.2) MUTATED DEL PEAK 15(10Q23.2) WILD-TYPE 
                          0.92                           0.03 
  DEL PEAK 15(10Q23.2) MUTATED DEL PEAK 15(10Q23.2) WILD-TYPE 
                         27.98                          49.38 
  DEL PEAK 15(10Q23.2) MUTATED DEL PEAK 15(10Q23.2) WILD-TYPE 
                          6.33                           7.20 
[1] "0.9 - 28.0 (6.3)" "0.0 - 49.4 (7.2)"
                    TCGA-F2-6879                     TCGA-F2-6880 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"DEL PEAK 15(10Q23.2) WILD-TYPE"   "DEL PEAK 15(10Q23.2) MUTATED" 
                    TCGA-FB-A5VM                     TCGA-FB-A78T 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-FB-A7DR                     TCGA-FZ-5920 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-FZ-5922                     TCGA-FZ-5923 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
  "DEL PEAK 15(10Q23.2) MUTATED" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-H8-A6C1                     TCGA-HZ-7289 
"DEL PEAK 15(10Q23.2) WILD-TYPE"   "DEL PEAK 15(10Q23.2) MUTATED" 
                    TCGA-HZ-7918                     TCGA-HZ-7919 
  "DEL PEAK 15(10Q23.2) MUTATED" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-7922                     TCGA-HZ-7923 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-7924                     TCGA-HZ-7925 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-7926                     TCGA-HZ-8001 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-8002                     TCGA-HZ-8003 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-8005                     TCGA-HZ-8315 
  "DEL PEAK 15(10Q23.2) MUTATED" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-8317                     TCGA-HZ-8519 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-8636                     TCGA-HZ-8638 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-A49G                     TCGA-HZ-A49H 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-A4BH                     TCGA-HZ-A4BK 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-IB-7644                     TCGA-IB-7645 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-IB-7646                     TCGA-IB-7647 
  "DEL PEAK 15(10Q23.2) MUTATED" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-IB-7649                     TCGA-IB-7651 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-IB-7652                     TCGA-IB-7885 
"DEL PEAK 15(10Q23.2) WILD-TYPE"   "DEL PEAK 15(10Q23.2) MUTATED" 
                    TCGA-IB-7886                     TCGA-IB-7887 
"DEL PEAK 15(10Q23.2) WILD-TYPE"   "DEL PEAK 15(10Q23.2) MUTATED" 
                    TCGA-IB-7888                     TCGA-IB-7889 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-IB-7890                     TCGA-IB-7891 
  "DEL PEAK 15(10Q23.2) MUTATED" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-IB-7893                     TCGA-IB-7897 
  "DEL PEAK 15(10Q23.2) MUTATED" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-IB-8126                     TCGA-IB-8127 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-IB-A5SO                     TCGA-IB-A5SP 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-IB-A5SQ                     TCGA-IB-A5SS 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-IB-A5ST                     TCGA-IB-A6UG 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-LB-A7SX                     TCGA-OE-A75W 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-PZ-A5RE                     TCGA-Q3-A5QY 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-US-A779                     TCGA-US-A77E 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-US-A77J 
"DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-F2-6879                     TCGA-F2-6880 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"DEL PEAK 15(10Q23.2) WILD-TYPE"   "DEL PEAK 15(10Q23.2) MUTATED" 
                    TCGA-FB-A5VM                     TCGA-FB-A78T 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-FB-A7DR                     TCGA-FZ-5920 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-FZ-5922                     TCGA-FZ-5923 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
  "DEL PEAK 15(10Q23.2) MUTATED" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-H8-A6C1                     TCGA-HZ-7289 
"DEL PEAK 15(10Q23.2) WILD-TYPE"   "DEL PEAK 15(10Q23.2) MUTATED" 
                    TCGA-HZ-7918                     TCGA-HZ-7919 
  "DEL PEAK 15(10Q23.2) MUTATED" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-7922                     TCGA-HZ-7923 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-7924                     TCGA-HZ-7925 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-7926                     TCGA-HZ-8001 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-8002                     TCGA-HZ-8003 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-8005                     TCGA-HZ-8315 
  "DEL PEAK 15(10Q23.2) MUTATED" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-8317                     TCGA-HZ-8519 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-8636                     TCGA-HZ-8638 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-A49G                     TCGA-HZ-A49H 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-A4BH                     TCGA-HZ-A4BK 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-IB-7644                     TCGA-IB-7645 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-IB-7646                     TCGA-IB-7647 
  "DEL PEAK 15(10Q23.2) MUTATED" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-IB-7649                     TCGA-IB-7651 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-IB-7652                     TCGA-IB-7885 
"DEL PEAK 15(10Q23.2) WILD-TYPE"   "DEL PEAK 15(10Q23.2) MUTATED" 
                    TCGA-IB-7886                     TCGA-IB-7887 
"DEL PEAK 15(10Q23.2) WILD-TYPE"   "DEL PEAK 15(10Q23.2) MUTATED" 
                    TCGA-IB-7888                     TCGA-IB-7889 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-IB-7890                     TCGA-IB-7891 
  "DEL PEAK 15(10Q23.2) MUTATED" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-IB-7893                     TCGA-IB-7897 
  "DEL PEAK 15(10Q23.2) MUTATED" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-IB-8126                     TCGA-IB-8127 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-IB-A5SO                     TCGA-IB-A5SP 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-IB-A5SQ                     TCGA-IB-A5SS 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-IB-A5ST                     TCGA-IB-A6UG 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-LB-A7SX                     TCGA-OE-A75W 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-PZ-A5RE                     TCGA-Q3-A5QY 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-US-A779                     TCGA-US-A77E 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-US-A77J 
"DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-F2-6879                     TCGA-F2-6880 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"DEL PEAK 15(10Q23.2) WILD-TYPE"   "DEL PEAK 15(10Q23.2) MUTATED" 
                    TCGA-FB-A5VM                     TCGA-FB-A78T 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-FB-A7DR                     TCGA-FZ-5920 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-FZ-5922                     TCGA-FZ-5923 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
  "DEL PEAK 15(10Q23.2) MUTATED" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-H8-A6C1                     TCGA-HZ-7289 
"DEL PEAK 15(10Q23.2) WILD-TYPE"   "DEL PEAK 15(10Q23.2) MUTATED" 
                    TCGA-HZ-7918                     TCGA-HZ-7919 
  "DEL PEAK 15(10Q23.2) MUTATED" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-7922                     TCGA-HZ-7923 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-7924                     TCGA-HZ-7925 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-7926                     TCGA-HZ-8001 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-8002                     TCGA-HZ-8003 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-8005                     TCGA-HZ-8315 
  "DEL PEAK 15(10Q23.2) MUTATED" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-8317                     TCGA-HZ-8519 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-8636                     TCGA-HZ-8638 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-A49G                     TCGA-HZ-A49H 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-A4BH                     TCGA-HZ-A4BK 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-IB-7644                     TCGA-IB-7645 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-IB-7646                     TCGA-IB-7647 
  "DEL PEAK 15(10Q23.2) MUTATED" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-IB-7649                     TCGA-IB-7651 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-IB-7652                     TCGA-IB-7885 
"DEL PEAK 15(10Q23.2) WILD-TYPE"   "DEL PEAK 15(10Q23.2) MUTATED" 
                    TCGA-IB-7886                     TCGA-IB-7887 
"DEL PEAK 15(10Q23.2) WILD-TYPE"   "DEL PEAK 15(10Q23.2) MUTATED" 
                    TCGA-IB-7888                     TCGA-IB-7889 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-IB-7890                     TCGA-IB-7891 
  "DEL PEAK 15(10Q23.2) MUTATED" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-IB-7893                     TCGA-IB-7897 
  "DEL PEAK 15(10Q23.2) MUTATED" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-IB-8126                     TCGA-IB-8127 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-IB-A5SO                     TCGA-IB-A5SP 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-IB-A5SQ                     TCGA-IB-A5SS 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-IB-A5ST                     TCGA-IB-A6UG 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-LB-A7SX                     TCGA-OE-A75W 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-PZ-A5RE                     TCGA-Q3-A5QY 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-US-A779                     TCGA-US-A77E 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-US-A77J 
"DEL PEAK 15(10Q23.2) WILD-TYPE" 
[1] "hr=" "1.3"
D30V2, continuous
                                vv
clus                             STAGE IA STAGE IB STAGE IIA STAGE IIB
  DEL PEAK 15(10Q23.2) MUTATED          0        1         1         8
  DEL PEAK 15(10Q23.2) WILD-TYPE        2        3        10        42
                                vv
clus                             STAGE III STAGE IV
  DEL PEAK 15(10Q23.2) MUTATED           0        0
  DEL PEAK 15(10Q23.2) WILD-TYPE         2        3
D30V3, multiclass
                                vv
clus                             T1+T2 T3+T4
  DEL PEAK 15(10Q23.2) MUTATED       1     9
  DEL PEAK 15(10Q23.2) WILD-TYPE     6    56
D30V4, multiclass
       clus
vv      DEL PEAK 15(10Q23.2) MUTATED DEL PEAK 15(10Q23.2) WILD-TYPE
  T1+T2                            1                              6
  T3+T4                            9                             56
D30V5, binary
                                cls
clus                              0  1
  DEL PEAK 15(10Q23.2) MUTATED    2  8
  DEL PEAK 15(10Q23.2) WILD-TYPE 16 45
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 15(10Q23.2) MUTATED      2    8
  DEL PEAK 15(10Q23.2) WILD-TYPE   16   45
   clus
vv  DEL PEAK 15(10Q23.2) MUTATED DEL PEAK 15(10Q23.2) WILD-TYPE
  0                            2                             16
  1                            8                             45
                                vv
clus                             M0 M1 MX
  DEL PEAK 15(10Q23.2) MUTATED    8  0  2
  DEL PEAK 15(10Q23.2) WILD-TYPE 31  3 28
D30V6, multiclass
    clus
vv   DEL PEAK 15(10Q23.2) MUTATED DEL PEAK 15(10Q23.2) WILD-TYPE
  M0                            8                             31
  M1                            0                              3
  MX                            2                             28
D30V7, binary
                                cls
clus                              0  1
  DEL PEAK 15(10Q23.2) MUTATED    4  6
  DEL PEAK 15(10Q23.2) WILD-TYPE 32 30
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 15(10Q23.2) MUTATED      4    6
  DEL PEAK 15(10Q23.2) WILD-TYPE   32   30
        clus
vv       DEL PEAK 15(10Q23.2) MUTATED DEL PEAK 15(10Q23.2) WILD-TYPE
  FEMALE                            4                             32
  MALE                              6                             30
                                vv
clus                             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK 15(10Q23.2) MUTATED                                     9
  DEL PEAK 15(10Q23.2) WILD-TYPE                                  55
                                vv
clus                             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK 15(10Q23.2) MUTATED                                       1
  DEL PEAK 15(10Q23.2) WILD-TYPE                                     4
                                vv
clus                             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK 15(10Q23.2) MUTATED                                                  0
  DEL PEAK 15(10Q23.2) WILD-TYPE                                                2
D30V8, multiclass
                                                  clus
vv                                                 DEL PEAK 15(10Q23.2) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                         9
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                       1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                            0
                                                  clus
vv                                                 DEL PEAK 15(10Q23.2) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                          55
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                         4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                              2
D30V9, continuous
D30V10, continuous
[1] "Remove cluster labels:"       "DEL PEAK 15(10Q23.2) MUTATED"
clus
  DEL PEAK 15(10Q23.2) MUTATED DEL PEAK 15(10Q23.2) WILD-TYPE 
                             2                             16 
                    TCGA-FB-A4P5                     TCGA-FB-A5VM 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-FB-A78T                     TCGA-FB-A7DR 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-H8-A6C1                     TCGA-IB-7644 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-IB-7649                     TCGA-IB-7651 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-IB-7886                     TCGA-IB-7891 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-IB-8126                     TCGA-IB-8127 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-IB-A5SS                     TCGA-IB-A6UG 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-LB-A7SX                     TCGA-OE-A75W 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                                vv
clus                             R0 R1 RX
  DEL PEAK 15(10Q23.2) MUTATED    5  3  1
  DEL PEAK 15(10Q23.2) WILD-TYPE 38 21  1
D30V11, multiclass
    clus
vv   DEL PEAK 15(10Q23.2) MUTATED DEL PEAK 15(10Q23.2) WILD-TYPE
  R0                            5                             38
  R1                            3                             21
  RX                            1                              1
D30V12, continuous

Clustering(31) Variable = DEL PEAK 16(11P15.4) MUTATION ANALYSIS
D31V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 16(11P15.4) MUTATED    8  5
  DEL PEAK 16(11P15.4) WILD-TYPE 32 24
  DEL PEAK 16(11P15.4) MUTATED DEL PEAK 16(11P15.4) WILD-TYPE 
                            13                             56 
  DEL PEAK 16(11P15.4) MUTATED DEL PEAK 16(11P15.4) WILD-TYPE 
                             5                             24 
$`DEL PEAK 16(11P15.4) MUTATED`
TCGA-F2-A44H TCGA-FB-A545 TCGA-FZ-5920 TCGA-HZ-7918 TCGA-HZ-A4BH TCGA-IB-7645 
       19.27        12.66         2.01         0.92         6.38        49.38 
TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7889 TCGA-IB-8127 
       15.65        27.98         4.04         3.62        15.81        17.16 
TCGA-LB-A7SX 
        4.18 

$`DEL PEAK 16(11P15.4) WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-FB-A4P5 
       10.98         9.70        11.84         7.10         5.03         0.13 
TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 
        2.47         0.03         5.46        36.20        20.81        12.89 
TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 
        7.66        13.02         7.89         0.66         0.13         0.26 
TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 
       12.13        11.87         0.26         0.62         0.79         0.69 
TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 TCGA-HZ-8638 
        3.95         0.92         0.53         0.10         0.16         2.99 
TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7646 TCGA-IB-7647 
        0.76         0.95         1.51        11.41         4.77        21.90 
TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7888 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 
       15.35        19.82        43.79        19.66        16.04         3.85 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS 
       15.98         0.56        10.82         9.86         7.20        15.12 
TCGA-IB-A5ST TCGA-IB-A6UG TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 
        0.26         1.35         3.62         8.12        13.68        16.80 
TCGA-US-A77E TCGA-US-A77J 
       14.14        18.67 

  DEL PEAK 16(11P15.4) MUTATED DEL PEAK 16(11P15.4) WILD-TYPE 
                          0.92                           0.03 
  DEL PEAK 16(11P15.4) MUTATED DEL PEAK 16(11P15.4) WILD-TYPE 
                         49.38                          43.79 
  DEL PEAK 16(11P15.4) MUTATED DEL PEAK 16(11P15.4) WILD-TYPE 
                         12.66                           7.15 
[1] "0.9 - 49.4 (12.7)" "0.0 - 43.8 (7.2)" 
                    TCGA-F2-6879                     TCGA-F2-6880 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"DEL PEAK 16(11P15.4) WILD-TYPE"   "DEL PEAK 16(11P15.4) MUTATED" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"DEL PEAK 16(11P15.4) WILD-TYPE"   "DEL PEAK 16(11P15.4) MUTATED" 
                    TCGA-FB-A5VM                     TCGA-FB-A78T 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-FB-A7DR                     TCGA-FZ-5920 
"DEL PEAK 16(11P15.4) WILD-TYPE"   "DEL PEAK 16(11P15.4) MUTATED" 
                    TCGA-FZ-5922                     TCGA-FZ-5923 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-H8-A6C1                     TCGA-HZ-7289 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-HZ-7918                     TCGA-HZ-7919 
  "DEL PEAK 16(11P15.4) MUTATED" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-HZ-7922                     TCGA-HZ-7923 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-HZ-7924                     TCGA-HZ-7925 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-HZ-7926                     TCGA-HZ-8001 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-HZ-8002                     TCGA-HZ-8003 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-HZ-8005                     TCGA-HZ-8315 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-HZ-8317                     TCGA-HZ-8519 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-HZ-8636                     TCGA-HZ-8638 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-HZ-A49G                     TCGA-HZ-A49H 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-HZ-A4BH                     TCGA-HZ-A4BK 
  "DEL PEAK 16(11P15.4) MUTATED" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-IB-7644                     TCGA-IB-7645 
"DEL PEAK 16(11P15.4) WILD-TYPE"   "DEL PEAK 16(11P15.4) MUTATED" 
                    TCGA-IB-7646                     TCGA-IB-7647 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-IB-7649                     TCGA-IB-7651 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-IB-7652                     TCGA-IB-7885 
  "DEL PEAK 16(11P15.4) MUTATED"   "DEL PEAK 16(11P15.4) MUTATED" 
                    TCGA-IB-7886                     TCGA-IB-7887 
  "DEL PEAK 16(11P15.4) MUTATED"   "DEL PEAK 16(11P15.4) MUTATED" 
                    TCGA-IB-7888                     TCGA-IB-7889 
"DEL PEAK 16(11P15.4) WILD-TYPE"   "DEL PEAK 16(11P15.4) MUTATED" 
                    TCGA-IB-7890                     TCGA-IB-7891 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-IB-7893                     TCGA-IB-7897 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-IB-8126                     TCGA-IB-8127 
"DEL PEAK 16(11P15.4) WILD-TYPE"   "DEL PEAK 16(11P15.4) MUTATED" 
                    TCGA-IB-A5SO                     TCGA-IB-A5SP 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-IB-A5SQ                     TCGA-IB-A5SS 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-IB-A5ST                     TCGA-IB-A6UG 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-LB-A7SX                     TCGA-OE-A75W 
  "DEL PEAK 16(11P15.4) MUTATED" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-PZ-A5RE                     TCGA-Q3-A5QY 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-US-A779                     TCGA-US-A77E 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-US-A77J 
"DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-F2-6879                     TCGA-F2-6880 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"DEL PEAK 16(11P15.4) WILD-TYPE"   "DEL PEAK 16(11P15.4) MUTATED" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"DEL PEAK 16(11P15.4) WILD-TYPE"   "DEL PEAK 16(11P15.4) MUTATED" 
                    TCGA-FB-A5VM                     TCGA-FB-A78T 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-FB-A7DR                     TCGA-FZ-5920 
"DEL PEAK 16(11P15.4) WILD-TYPE"   "DEL PEAK 16(11P15.4) MUTATED" 
                    TCGA-FZ-5922                     TCGA-FZ-5923 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-H8-A6C1                     TCGA-HZ-7289 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-HZ-7918                     TCGA-HZ-7919 
  "DEL PEAK 16(11P15.4) MUTATED" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-HZ-7922                     TCGA-HZ-7923 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-HZ-7924                     TCGA-HZ-7925 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-HZ-7926                     TCGA-HZ-8001 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-HZ-8002                     TCGA-HZ-8003 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-HZ-8005                     TCGA-HZ-8315 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-HZ-8317                     TCGA-HZ-8519 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-HZ-8636                     TCGA-HZ-8638 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-HZ-A49G                     TCGA-HZ-A49H 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-HZ-A4BH                     TCGA-HZ-A4BK 
  "DEL PEAK 16(11P15.4) MUTATED" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-IB-7644                     TCGA-IB-7645 
"DEL PEAK 16(11P15.4) WILD-TYPE"   "DEL PEAK 16(11P15.4) MUTATED" 
                    TCGA-IB-7646                     TCGA-IB-7647 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-IB-7649                     TCGA-IB-7651 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-IB-7652                     TCGA-IB-7885 
  "DEL PEAK 16(11P15.4) MUTATED"   "DEL PEAK 16(11P15.4) MUTATED" 
                    TCGA-IB-7886                     TCGA-IB-7887 
  "DEL PEAK 16(11P15.4) MUTATED"   "DEL PEAK 16(11P15.4) MUTATED" 
                    TCGA-IB-7888                     TCGA-IB-7889 
"DEL PEAK 16(11P15.4) WILD-TYPE"   "DEL PEAK 16(11P15.4) MUTATED" 
                    TCGA-IB-7890                     TCGA-IB-7891 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-IB-7893                     TCGA-IB-7897 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-IB-8126                     TCGA-IB-8127 
"DEL PEAK 16(11P15.4) WILD-TYPE"   "DEL PEAK 16(11P15.4) MUTATED" 
                    TCGA-IB-A5SO                     TCGA-IB-A5SP 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-IB-A5SQ                     TCGA-IB-A5SS 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-IB-A5ST                     TCGA-IB-A6UG 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-LB-A7SX                     TCGA-OE-A75W 
  "DEL PEAK 16(11P15.4) MUTATED" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-PZ-A5RE                     TCGA-Q3-A5QY 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-US-A779                     TCGA-US-A77E 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-US-A77J 
"DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-F2-6879                     TCGA-F2-6880 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"DEL PEAK 16(11P15.4) WILD-TYPE"   "DEL PEAK 16(11P15.4) MUTATED" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"DEL PEAK 16(11P15.4) WILD-TYPE"   "DEL PEAK 16(11P15.4) MUTATED" 
                    TCGA-FB-A5VM                     TCGA-FB-A78T 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-FB-A7DR                     TCGA-FZ-5920 
"DEL PEAK 16(11P15.4) WILD-TYPE"   "DEL PEAK 16(11P15.4) MUTATED" 
                    TCGA-FZ-5922                     TCGA-FZ-5923 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-H8-A6C1                     TCGA-HZ-7289 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-HZ-7918                     TCGA-HZ-7919 
  "DEL PEAK 16(11P15.4) MUTATED" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-HZ-7922                     TCGA-HZ-7923 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-HZ-7924                     TCGA-HZ-7925 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-HZ-7926                     TCGA-HZ-8001 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-HZ-8002                     TCGA-HZ-8003 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-HZ-8005                     TCGA-HZ-8315 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-HZ-8317                     TCGA-HZ-8519 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-HZ-8636                     TCGA-HZ-8638 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-HZ-A49G                     TCGA-HZ-A49H 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-HZ-A4BH                     TCGA-HZ-A4BK 
  "DEL PEAK 16(11P15.4) MUTATED" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-IB-7644                     TCGA-IB-7645 
"DEL PEAK 16(11P15.4) WILD-TYPE"   "DEL PEAK 16(11P15.4) MUTATED" 
                    TCGA-IB-7646                     TCGA-IB-7647 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-IB-7649                     TCGA-IB-7651 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-IB-7652                     TCGA-IB-7885 
  "DEL PEAK 16(11P15.4) MUTATED"   "DEL PEAK 16(11P15.4) MUTATED" 
                    TCGA-IB-7886                     TCGA-IB-7887 
  "DEL PEAK 16(11P15.4) MUTATED"   "DEL PEAK 16(11P15.4) MUTATED" 
                    TCGA-IB-7888                     TCGA-IB-7889 
"DEL PEAK 16(11P15.4) WILD-TYPE"   "DEL PEAK 16(11P15.4) MUTATED" 
                    TCGA-IB-7890                     TCGA-IB-7891 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-IB-7893                     TCGA-IB-7897 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-IB-8126                     TCGA-IB-8127 
"DEL PEAK 16(11P15.4) WILD-TYPE"   "DEL PEAK 16(11P15.4) MUTATED" 
                    TCGA-IB-A5SO                     TCGA-IB-A5SP 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-IB-A5SQ                     TCGA-IB-A5SS 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-IB-A5ST                     TCGA-IB-A6UG 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-LB-A7SX                     TCGA-OE-A75W 
  "DEL PEAK 16(11P15.4) MUTATED" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-PZ-A5RE                     TCGA-Q3-A5QY 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-US-A779                     TCGA-US-A77E 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-US-A77J 
"DEL PEAK 16(11P15.4) WILD-TYPE" 
[1] "hr=" "2.3"
D31V2, continuous
                                vv
clus                             STAGE IA STAGE IB STAGE IIA STAGE IIB
  DEL PEAK 16(11P15.4) MUTATED          0        0         1        12
  DEL PEAK 16(11P15.4) WILD-TYPE        2        4        10        38
                                vv
clus                             STAGE III STAGE IV
  DEL PEAK 16(11P15.4) MUTATED           0        0
  DEL PEAK 16(11P15.4) WILD-TYPE         2        3
D31V3, multiclass
                                vv
clus                             T1+T2 T3+T4
  DEL PEAK 16(11P15.4) MUTATED       0    13
  DEL PEAK 16(11P15.4) WILD-TYPE     7    52
D31V4, multiclass
       clus
vv      DEL PEAK 16(11P15.4) MUTATED DEL PEAK 16(11P15.4) WILD-TYPE
  T1+T2                            0                              7
  T3+T4                           13                             52
D31V5, binary
                                cls
clus                              0  1
  DEL PEAK 16(11P15.4) MUTATED    1 12
  DEL PEAK 16(11P15.4) WILD-TYPE 17 41
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 16(11P15.4) MUTATED      1   12
  DEL PEAK 16(11P15.4) WILD-TYPE   17   41
   clus
vv  DEL PEAK 16(11P15.4) MUTATED DEL PEAK 16(11P15.4) WILD-TYPE
  0                            1                             17
  1                           12                             41
                                vv
clus                             M0 M1 MX
  DEL PEAK 16(11P15.4) MUTATED   11  0  2
  DEL PEAK 16(11P15.4) WILD-TYPE 28  3 28
D31V6, multiclass
    clus
vv   DEL PEAK 16(11P15.4) MUTATED DEL PEAK 16(11P15.4) WILD-TYPE
  M0                           11                             28
  M1                            0                              3
  MX                            2                             28
D31V7, binary
                                cls
clus                              0  1
  DEL PEAK 16(11P15.4) MUTATED    7  6
  DEL PEAK 16(11P15.4) WILD-TYPE 29 30
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 16(11P15.4) MUTATED      7    6
  DEL PEAK 16(11P15.4) WILD-TYPE   29   30
        clus
vv       DEL PEAK 16(11P15.4) MUTATED DEL PEAK 16(11P15.4) WILD-TYPE
  FEMALE                            7                             29
  MALE                              6                             30
                                vv
clus                             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK 16(11P15.4) MUTATED                                    13
  DEL PEAK 16(11P15.4) WILD-TYPE                                  51
                                vv
clus                             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK 16(11P15.4) MUTATED                                       0
  DEL PEAK 16(11P15.4) WILD-TYPE                                     5
                                vv
clus                             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK 16(11P15.4) MUTATED                                                  0
  DEL PEAK 16(11P15.4) WILD-TYPE                                                2
D31V8, multiclass
                                                  clus
vv                                                 DEL PEAK 16(11P15.4) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                        13
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                       0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                            0
                                                  clus
vv                                                 DEL PEAK 16(11P15.4) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                          51
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                         5
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                              2
D31V9, continuous
D31V10, continuous
                                vv
clus                             R0 R1 RX
  DEL PEAK 16(11P15.4) MUTATED    6  6  0
  DEL PEAK 16(11P15.4) WILD-TYPE 37 18  2
D31V11, multiclass
    clus
vv   DEL PEAK 16(11P15.4) MUTATED DEL PEAK 16(11P15.4) WILD-TYPE
  R0                            6                             37
  R1                            6                             18
  RX                            0                              2
D31V12, continuous

Clustering(32) Variable = DEL PEAK 17(12P12.1) MUTATION ANALYSIS
D32V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 17(12P12.1) MUTATED    5  3
  DEL PEAK 17(12P12.1) WILD-TYPE 35 26
  DEL PEAK 17(12P12.1) MUTATED DEL PEAK 17(12P12.1) WILD-TYPE 
                             8                             61 
  DEL PEAK 17(12P12.1) MUTATED DEL PEAK 17(12P12.1) WILD-TYPE 
                             3                             26 
$`DEL PEAK 17(12P12.1) MUTATED`
TCGA-F2-6879 TCGA-FZ-5920 TCGA-HZ-7289 TCGA-HZ-7919 TCGA-HZ-A4BH TCGA-IB-7893 
       10.98         2.01         7.89         0.66         6.38         3.85 
TCGA-IB-A5SP TCGA-LB-A7SX 
        9.86         4.18 

$`DEL PEAK 17(12P12.1) WILD-TYPE`
TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
        9.70        11.84         7.10         5.03        19.27         0.13 
TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5922 TCGA-FZ-5923 
       12.66         2.47         0.03         5.46        36.20        20.81 
TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7918 TCGA-HZ-7922 TCGA-HZ-7923 
       12.89         7.66        13.02         0.92         0.13         0.26 
TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 
       12.13        11.87         0.26         0.62         0.79         0.69 
TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 TCGA-HZ-8638 
        3.95         0.92         0.53         0.10         0.16         2.99 
TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 
        0.76         0.95         1.51        11.41        49.38         4.77 
TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 
       21.90        15.35        19.82        15.65        27.98         4.04 
TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7897 
        3.62        43.79        15.81        19.66        16.04        15.98 
TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
        0.56        17.16        10.82         7.20        15.12         0.26 
TCGA-IB-A6UG TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E 
        1.35         3.62         8.12        13.68        16.80        14.14 
TCGA-US-A77J 
       18.67 

  DEL PEAK 17(12P12.1) MUTATED DEL PEAK 17(12P12.1) WILD-TYPE 
                          0.66                           0.03 
  DEL PEAK 17(12P12.1) MUTATED DEL PEAK 17(12P12.1) WILD-TYPE 
                         10.98                          49.38 
  DEL PEAK 17(12P12.1) MUTATED DEL PEAK 17(12P12.1) WILD-TYPE 
                          5.28                           7.66 
[1] "0.7 - 11.0 (5.3)" "0.0 - 49.4 (7.7)"
                    TCGA-F2-6879                     TCGA-F2-6880 
  "DEL PEAK 17(12P12.1) MUTATED" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-FB-A5VM                     TCGA-FB-A78T 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-FB-A7DR                     TCGA-FZ-5920 
"DEL PEAK 17(12P12.1) WILD-TYPE"   "DEL PEAK 17(12P12.1) MUTATED" 
                    TCGA-FZ-5922                     TCGA-FZ-5923 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-H8-A6C1                     TCGA-HZ-7289 
"DEL PEAK 17(12P12.1) WILD-TYPE"   "DEL PEAK 17(12P12.1) MUTATED" 
                    TCGA-HZ-7918                     TCGA-HZ-7919 
"DEL PEAK 17(12P12.1) WILD-TYPE"   "DEL PEAK 17(12P12.1) MUTATED" 
                    TCGA-HZ-7922                     TCGA-HZ-7923 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-HZ-7924                     TCGA-HZ-7925 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-HZ-7926                     TCGA-HZ-8001 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-HZ-8002                     TCGA-HZ-8003 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-HZ-8005                     TCGA-HZ-8315 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-HZ-8317                     TCGA-HZ-8519 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-HZ-8636                     TCGA-HZ-8638 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-HZ-A49G                     TCGA-HZ-A49H 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-HZ-A4BH                     TCGA-HZ-A4BK 
  "DEL PEAK 17(12P12.1) MUTATED" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-IB-7644                     TCGA-IB-7645 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-IB-7646                     TCGA-IB-7647 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-IB-7649                     TCGA-IB-7651 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-IB-7652                     TCGA-IB-7885 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-IB-7886                     TCGA-IB-7887 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-IB-7888                     TCGA-IB-7889 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-IB-7890                     TCGA-IB-7891 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-IB-7893                     TCGA-IB-7897 
  "DEL PEAK 17(12P12.1) MUTATED" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-IB-8126                     TCGA-IB-8127 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-IB-A5SO                     TCGA-IB-A5SP 
"DEL PEAK 17(12P12.1) WILD-TYPE"   "DEL PEAK 17(12P12.1) MUTATED" 
                    TCGA-IB-A5SQ                     TCGA-IB-A5SS 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-IB-A5ST                     TCGA-IB-A6UG 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-LB-A7SX                     TCGA-OE-A75W 
  "DEL PEAK 17(12P12.1) MUTATED" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-PZ-A5RE                     TCGA-Q3-A5QY 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-US-A779                     TCGA-US-A77E 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-US-A77J 
"DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-F2-6879                     TCGA-F2-6880 
  "DEL PEAK 17(12P12.1) MUTATED" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-FB-A5VM                     TCGA-FB-A78T 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-FB-A7DR                     TCGA-FZ-5920 
"DEL PEAK 17(12P12.1) WILD-TYPE"   "DEL PEAK 17(12P12.1) MUTATED" 
                    TCGA-FZ-5922                     TCGA-FZ-5923 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-H8-A6C1                     TCGA-HZ-7289 
"DEL PEAK 17(12P12.1) WILD-TYPE"   "DEL PEAK 17(12P12.1) MUTATED" 
                    TCGA-HZ-7918                     TCGA-HZ-7919 
"DEL PEAK 17(12P12.1) WILD-TYPE"   "DEL PEAK 17(12P12.1) MUTATED" 
                    TCGA-HZ-7922                     TCGA-HZ-7923 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-HZ-7924                     TCGA-HZ-7925 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-HZ-7926                     TCGA-HZ-8001 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-HZ-8002                     TCGA-HZ-8003 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-HZ-8005                     TCGA-HZ-8315 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-HZ-8317                     TCGA-HZ-8519 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-HZ-8636                     TCGA-HZ-8638 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-HZ-A49G                     TCGA-HZ-A49H 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-HZ-A4BH                     TCGA-HZ-A4BK 
  "DEL PEAK 17(12P12.1) MUTATED" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-IB-7644                     TCGA-IB-7645 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-IB-7646                     TCGA-IB-7647 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-IB-7649                     TCGA-IB-7651 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-IB-7652                     TCGA-IB-7885 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-IB-7886                     TCGA-IB-7887 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-IB-7888                     TCGA-IB-7889 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-IB-7890                     TCGA-IB-7891 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-IB-7893                     TCGA-IB-7897 
  "DEL PEAK 17(12P12.1) MUTATED" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-IB-8126                     TCGA-IB-8127 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-IB-A5SO                     TCGA-IB-A5SP 
"DEL PEAK 17(12P12.1) WILD-TYPE"   "DEL PEAK 17(12P12.1) MUTATED" 
                    TCGA-IB-A5SQ                     TCGA-IB-A5SS 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-IB-A5ST                     TCGA-IB-A6UG 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-LB-A7SX                     TCGA-OE-A75W 
  "DEL PEAK 17(12P12.1) MUTATED" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-PZ-A5RE                     TCGA-Q3-A5QY 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-US-A779                     TCGA-US-A77E 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-US-A77J 
"DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-F2-6879                     TCGA-F2-6880 
  "DEL PEAK 17(12P12.1) MUTATED" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-FB-A5VM                     TCGA-FB-A78T 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-FB-A7DR                     TCGA-FZ-5920 
"DEL PEAK 17(12P12.1) WILD-TYPE"   "DEL PEAK 17(12P12.1) MUTATED" 
                    TCGA-FZ-5922                     TCGA-FZ-5923 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-H8-A6C1                     TCGA-HZ-7289 
"DEL PEAK 17(12P12.1) WILD-TYPE"   "DEL PEAK 17(12P12.1) MUTATED" 
                    TCGA-HZ-7918                     TCGA-HZ-7919 
"DEL PEAK 17(12P12.1) WILD-TYPE"   "DEL PEAK 17(12P12.1) MUTATED" 
                    TCGA-HZ-7922                     TCGA-HZ-7923 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-HZ-7924                     TCGA-HZ-7925 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-HZ-7926                     TCGA-HZ-8001 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-HZ-8002                     TCGA-HZ-8003 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-HZ-8005                     TCGA-HZ-8315 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-HZ-8317                     TCGA-HZ-8519 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-HZ-8636                     TCGA-HZ-8638 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-HZ-A49G                     TCGA-HZ-A49H 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-HZ-A4BH                     TCGA-HZ-A4BK 
  "DEL PEAK 17(12P12.1) MUTATED" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-IB-7644                     TCGA-IB-7645 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-IB-7646                     TCGA-IB-7647 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-IB-7649                     TCGA-IB-7651 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-IB-7652                     TCGA-IB-7885 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-IB-7886                     TCGA-IB-7887 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-IB-7888                     TCGA-IB-7889 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-IB-7890                     TCGA-IB-7891 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-IB-7893                     TCGA-IB-7897 
  "DEL PEAK 17(12P12.1) MUTATED" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-IB-8126                     TCGA-IB-8127 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-IB-A5SO                     TCGA-IB-A5SP 
"DEL PEAK 17(12P12.1) WILD-TYPE"   "DEL PEAK 17(12P12.1) MUTATED" 
                    TCGA-IB-A5SQ                     TCGA-IB-A5SS 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-IB-A5ST                     TCGA-IB-A6UG 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-LB-A7SX                     TCGA-OE-A75W 
  "DEL PEAK 17(12P12.1) MUTATED" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-PZ-A5RE                     TCGA-Q3-A5QY 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-US-A779                     TCGA-US-A77E 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-US-A77J 
"DEL PEAK 17(12P12.1) WILD-TYPE" 
[1] "hr=" "2.5"
D32V2, continuous
                                vv
clus                             STAGE IA STAGE IB STAGE IIA STAGE IIB
  DEL PEAK 17(12P12.1) MUTATED          0        0         2         7
  DEL PEAK 17(12P12.1) WILD-TYPE        2        4         9        43
                                vv
clus                             STAGE III STAGE IV
  DEL PEAK 17(12P12.1) MUTATED           0        0
  DEL PEAK 17(12P12.1) WILD-TYPE         2        3
D32V3, multiclass
                                vv
clus                             T1+T2 T3+T4
  DEL PEAK 17(12P12.1) MUTATED       0     9
  DEL PEAK 17(12P12.1) WILD-TYPE     7    56
D32V4, multiclass
       clus
vv      DEL PEAK 17(12P12.1) MUTATED DEL PEAK 17(12P12.1) WILD-TYPE
  T1+T2                            0                              7
  T3+T4                            9                             56
D32V5, binary
                                cls
clus                              0  1
  DEL PEAK 17(12P12.1) MUTATED    2  7
  DEL PEAK 17(12P12.1) WILD-TYPE 16 46
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 17(12P12.1) MUTATED      2    7
  DEL PEAK 17(12P12.1) WILD-TYPE   16   46
   clus
vv  DEL PEAK 17(12P12.1) MUTATED DEL PEAK 17(12P12.1) WILD-TYPE
  0                            2                             16
  1                            7                             46
                                vv
clus                             M0 M1 MX
  DEL PEAK 17(12P12.1) MUTATED    5  0  4
  DEL PEAK 17(12P12.1) WILD-TYPE 34  3 26
D32V6, multiclass
    clus
vv   DEL PEAK 17(12P12.1) MUTATED DEL PEAK 17(12P12.1) WILD-TYPE
  M0                            5                             34
  M1                            0                              3
  MX                            4                             26
D32V7, binary
                                cls
clus                              0  1
  DEL PEAK 17(12P12.1) MUTATED    2  7
  DEL PEAK 17(12P12.1) WILD-TYPE 34 29
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 17(12P12.1) MUTATED      2    7
  DEL PEAK 17(12P12.1) WILD-TYPE   34   29
        clus
vv       DEL PEAK 17(12P12.1) MUTATED DEL PEAK 17(12P12.1) WILD-TYPE
  FEMALE                            2                             34
  MALE                              7                             29
                                vv
clus                             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK 17(12P12.1) MUTATED                                     7
  DEL PEAK 17(12P12.1) WILD-TYPE                                  57
                                vv
clus                             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK 17(12P12.1) MUTATED                                       1
  DEL PEAK 17(12P12.1) WILD-TYPE                                     4
                                vv
clus                             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK 17(12P12.1) MUTATED                                                  0
  DEL PEAK 17(12P12.1) WILD-TYPE                                                2
D32V8, multiclass
                                                  clus
vv                                                 DEL PEAK 17(12P12.1) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                         7
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                       1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                            0
                                                  clus
vv                                                 DEL PEAK 17(12P12.1) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                          57
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                         4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                              2
D32V9, continuous
[1] "Remove cluster labels:"       "DEL PEAK 17(12P12.1) MUTATED"
clus
  DEL PEAK 17(12P12.1) MUTATED DEL PEAK 17(12P12.1) WILD-TYPE 
                             1                             20 
                    TCGA-F2-6880                     TCGA-FB-A4P5 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-FB-A5VM                     TCGA-FB-A78T 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-FB-A7DR                     TCGA-H6-8124 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-H6-A45N                     TCGA-H8-A6C1 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-IB-7644                     TCGA-IB-7649 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7885 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-IB-7886                     TCGA-IB-7887 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-IB-7891                     TCGA-IB-8126 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-IB-8127                     TCGA-IB-A5SS 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-IB-A6UG                     TCGA-OE-A75W 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
D32V10, continuous
[1] "Remove cluster labels:"       "DEL PEAK 17(12P12.1) MUTATED"
clus
  DEL PEAK 17(12P12.1) MUTATED DEL PEAK 17(12P12.1) WILD-TYPE 
                             1                             17 
                    TCGA-FB-A4P5                     TCGA-FB-A5VM 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-FB-A78T                     TCGA-FB-A7DR 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-H8-A6C1 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-IB-7644                     TCGA-IB-7649 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7885 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-IB-7886                     TCGA-IB-7891 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-IB-8126                     TCGA-IB-8127 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-IB-A5SS                     TCGA-IB-A6UG 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-OE-A75W 
"DEL PEAK 17(12P12.1) WILD-TYPE" 
                                vv
clus                             R0 R1 RX
  DEL PEAK 17(12P12.1) MUTATED    3  5  1
  DEL PEAK 17(12P12.1) WILD-TYPE 40 19  1
D32V11, multiclass
    clus
vv   DEL PEAK 17(12P12.1) MUTATED DEL PEAK 17(12P12.1) WILD-TYPE
  R0                            3                             40
  R1                            5                             19
  RX                            1                              1
D32V12, continuous

Clustering(33) Variable = DEL PEAK 18(12Q12) MUTATION ANALYSIS
D33V1, survival
                              sevent
clus2                           0  1
  DEL PEAK 18(12Q12) MUTATED    4  4
  DEL PEAK 18(12Q12) WILD-TYPE 36 25
  DEL PEAK 18(12Q12) MUTATED DEL PEAK 18(12Q12) WILD-TYPE 
                           8                           61 
  DEL PEAK 18(12Q12) MUTATED DEL PEAK 18(12Q12) WILD-TYPE 
                           4                           25 
$`DEL PEAK 18(12Q12) MUTATED`
TCGA-FB-A545 TCGA-H6-8124 TCGA-HZ-8636 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7890 
       12.66        12.89         0.16         4.04         3.62        19.66 
TCGA-IB-7893 TCGA-LB-A7SX 
        3.85         4.18 

$`DEL PEAK 18(12Q12) WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 
        0.13         2.47         0.03         5.46         2.01        36.20 
TCGA-FZ-5923 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 
       20.81         7.66        13.02         7.89         0.92         0.66 
TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 
        0.13         0.26        12.13        11.87         0.26         0.62 
TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 
        0.79         0.69         3.95         0.92         0.53         0.10 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        2.99         0.76         0.95         6.38         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 
       49.38         4.77        21.90        15.35        19.82        15.65 
TCGA-IB-7885 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7891 TCGA-IB-7897 TCGA-IB-8126 
       27.98        43.79        15.81        16.04        15.98         0.56 
TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
       17.16        10.82         9.86         7.20        15.12         0.26 
TCGA-IB-A6UG TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E 
        1.35         3.62         8.12        13.68        16.80        14.14 
TCGA-US-A77J 
       18.67 

  DEL PEAK 18(12Q12) MUTATED DEL PEAK 18(12Q12) WILD-TYPE 
                        0.16                         0.03 
  DEL PEAK 18(12Q12) MUTATED DEL PEAK 18(12Q12) WILD-TYPE 
                       19.66                        49.38 
  DEL PEAK 18(12Q12) MUTATED DEL PEAK 18(12Q12) WILD-TYPE 
                        4.11                         7.66 
[1] "0.2 - 19.7 (4.1)" "0.0 - 49.4 (7.7)"
                  TCGA-F2-6879                   TCGA-F2-6880 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-F2-7273                   TCGA-F2-7276 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-F2-A44G                   TCGA-F2-A44H 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-FB-A4P5                   TCGA-FB-A545 
"DEL PEAK 18(12Q12) WILD-TYPE"   "DEL PEAK 18(12Q12) MUTATED" 
                  TCGA-FB-A5VM                   TCGA-FB-A78T 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-FB-A7DR                   TCGA-FZ-5920 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-FZ-5922                   TCGA-FZ-5923 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-H6-8124                   TCGA-H6-A45N 
  "DEL PEAK 18(12Q12) MUTATED" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-H8-A6C1                   TCGA-HZ-7289 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-HZ-7918                   TCGA-HZ-7919 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-HZ-7922                   TCGA-HZ-7923 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-HZ-7924                   TCGA-HZ-7925 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-HZ-7926                   TCGA-HZ-8001 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-HZ-8002                   TCGA-HZ-8003 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-HZ-8005                   TCGA-HZ-8315 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-HZ-8317                   TCGA-HZ-8519 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-HZ-8636                   TCGA-HZ-8638 
  "DEL PEAK 18(12Q12) MUTATED" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-HZ-A49G                   TCGA-HZ-A49H 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-HZ-A4BH                   TCGA-HZ-A4BK 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-IB-7644                   TCGA-IB-7645 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-IB-7646                   TCGA-IB-7647 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-IB-7649                   TCGA-IB-7651 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-IB-7652                   TCGA-IB-7885 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-IB-7886                   TCGA-IB-7887 
  "DEL PEAK 18(12Q12) MUTATED"   "DEL PEAK 18(12Q12) MUTATED" 
                  TCGA-IB-7888                   TCGA-IB-7889 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-IB-7890                   TCGA-IB-7891 
  "DEL PEAK 18(12Q12) MUTATED" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-IB-7893                   TCGA-IB-7897 
  "DEL PEAK 18(12Q12) MUTATED" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-IB-8126                   TCGA-IB-8127 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-IB-A5SO                   TCGA-IB-A5SP 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-IB-A5SQ                   TCGA-IB-A5SS 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-IB-A5ST                   TCGA-IB-A6UG 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-LB-A7SX                   TCGA-OE-A75W 
  "DEL PEAK 18(12Q12) MUTATED" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-PZ-A5RE                   TCGA-Q3-A5QY 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-US-A779                   TCGA-US-A77E 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-US-A77J 
"DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-F2-6879                   TCGA-F2-6880 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-F2-7273                   TCGA-F2-7276 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-F2-A44G                   TCGA-F2-A44H 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-FB-A4P5                   TCGA-FB-A545 
"DEL PEAK 18(12Q12) WILD-TYPE"   "DEL PEAK 18(12Q12) MUTATED" 
                  TCGA-FB-A5VM                   TCGA-FB-A78T 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-FB-A7DR                   TCGA-FZ-5920 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-FZ-5922                   TCGA-FZ-5923 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-H6-8124                   TCGA-H6-A45N 
  "DEL PEAK 18(12Q12) MUTATED" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-H8-A6C1                   TCGA-HZ-7289 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-HZ-7918                   TCGA-HZ-7919 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-HZ-7922                   TCGA-HZ-7923 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-HZ-7924                   TCGA-HZ-7925 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-HZ-7926                   TCGA-HZ-8001 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-HZ-8002                   TCGA-HZ-8003 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-HZ-8005                   TCGA-HZ-8315 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-HZ-8317                   TCGA-HZ-8519 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-HZ-8636                   TCGA-HZ-8638 
  "DEL PEAK 18(12Q12) MUTATED" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-HZ-A49G                   TCGA-HZ-A49H 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-HZ-A4BH                   TCGA-HZ-A4BK 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-IB-7644                   TCGA-IB-7645 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-IB-7646                   TCGA-IB-7647 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-IB-7649                   TCGA-IB-7651 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-IB-7652                   TCGA-IB-7885 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-IB-7886                   TCGA-IB-7887 
  "DEL PEAK 18(12Q12) MUTATED"   "DEL PEAK 18(12Q12) MUTATED" 
                  TCGA-IB-7888                   TCGA-IB-7889 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-IB-7890                   TCGA-IB-7891 
  "DEL PEAK 18(12Q12) MUTATED" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-IB-7893                   TCGA-IB-7897 
  "DEL PEAK 18(12Q12) MUTATED" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-IB-8126                   TCGA-IB-8127 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-IB-A5SO                   TCGA-IB-A5SP 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-IB-A5SQ                   TCGA-IB-A5SS 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-IB-A5ST                   TCGA-IB-A6UG 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-LB-A7SX                   TCGA-OE-A75W 
  "DEL PEAK 18(12Q12) MUTATED" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-PZ-A5RE                   TCGA-Q3-A5QY 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-US-A779                   TCGA-US-A77E 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-US-A77J 
"DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-F2-6879                   TCGA-F2-6880 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-F2-7273                   TCGA-F2-7276 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-F2-A44G                   TCGA-F2-A44H 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-FB-A4P5                   TCGA-FB-A545 
"DEL PEAK 18(12Q12) WILD-TYPE"   "DEL PEAK 18(12Q12) MUTATED" 
                  TCGA-FB-A5VM                   TCGA-FB-A78T 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-FB-A7DR                   TCGA-FZ-5920 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-FZ-5922                   TCGA-FZ-5923 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-H6-8124                   TCGA-H6-A45N 
  "DEL PEAK 18(12Q12) MUTATED" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-H8-A6C1                   TCGA-HZ-7289 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-HZ-7918                   TCGA-HZ-7919 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-HZ-7922                   TCGA-HZ-7923 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-HZ-7924                   TCGA-HZ-7925 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-HZ-7926                   TCGA-HZ-8001 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-HZ-8002                   TCGA-HZ-8003 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-HZ-8005                   TCGA-HZ-8315 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-HZ-8317                   TCGA-HZ-8519 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-HZ-8636                   TCGA-HZ-8638 
  "DEL PEAK 18(12Q12) MUTATED" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-HZ-A49G                   TCGA-HZ-A49H 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-HZ-A4BH                   TCGA-HZ-A4BK 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-IB-7644                   TCGA-IB-7645 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-IB-7646                   TCGA-IB-7647 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-IB-7649                   TCGA-IB-7651 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-IB-7652                   TCGA-IB-7885 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-IB-7886                   TCGA-IB-7887 
  "DEL PEAK 18(12Q12) MUTATED"   "DEL PEAK 18(12Q12) MUTATED" 
                  TCGA-IB-7888                   TCGA-IB-7889 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-IB-7890                   TCGA-IB-7891 
  "DEL PEAK 18(12Q12) MUTATED" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-IB-7893                   TCGA-IB-7897 
  "DEL PEAK 18(12Q12) MUTATED" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-IB-8126                   TCGA-IB-8127 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-IB-A5SO                   TCGA-IB-A5SP 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-IB-A5SQ                   TCGA-IB-A5SS 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-IB-A5ST                   TCGA-IB-A6UG 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-LB-A7SX                   TCGA-OE-A75W 
  "DEL PEAK 18(12Q12) MUTATED" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-PZ-A5RE                   TCGA-Q3-A5QY 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-US-A779                   TCGA-US-A77E 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-US-A77J 
"DEL PEAK 18(12Q12) WILD-TYPE" 
[1] "hr=" "1.9"
D33V2, continuous
                              vv
clus                           STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III
  DEL PEAK 18(12Q12) MUTATED          0        1         1         5         0
  DEL PEAK 18(12Q12) WILD-TYPE        2        3        10        45         2
                              vv
clus                           STAGE IV
  DEL PEAK 18(12Q12) MUTATED          1
  DEL PEAK 18(12Q12) WILD-TYPE        2
D33V3, multiclass
                              vv
clus                           T1+T2 T3+T4
  DEL PEAK 18(12Q12) MUTATED       1     7
  DEL PEAK 18(12Q12) WILD-TYPE     6    58
D33V4, multiclass
       clus
vv      DEL PEAK 18(12Q12) MUTATED DEL PEAK 18(12Q12) WILD-TYPE
  T1+T2                          1                            6
  T3+T4                          7                           58
D33V5, binary
                              cls
clus                            0  1
  DEL PEAK 18(12Q12) MUTATED    3  5
  DEL PEAK 18(12Q12) WILD-TYPE 15 48
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 18(12Q12) MUTATED      3    5
  DEL PEAK 18(12Q12) WILD-TYPE   15   48
   clus
vv  DEL PEAK 18(12Q12) MUTATED DEL PEAK 18(12Q12) WILD-TYPE
  0                          3                           15
  1                          5                           48
                              vv
clus                           M0 M1 MX
  DEL PEAK 18(12Q12) MUTATED    6  1  1
  DEL PEAK 18(12Q12) WILD-TYPE 33  2 29
D33V6, multiclass
    clus
vv   DEL PEAK 18(12Q12) MUTATED DEL PEAK 18(12Q12) WILD-TYPE
  M0                          6                           33
  M1                          1                            2
  MX                          1                           29
D33V7, binary
                              cls
clus                            0  1
  DEL PEAK 18(12Q12) MUTATED    5  3
  DEL PEAK 18(12Q12) WILD-TYPE 31 33
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 18(12Q12) MUTATED      5    3
  DEL PEAK 18(12Q12) WILD-TYPE   31   33
        clus
vv       DEL PEAK 18(12Q12) MUTATED DEL PEAK 18(12Q12) WILD-TYPE
  FEMALE                          5                           31
  MALE                            3                           33
                              vv
clus                           PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK 18(12Q12) MUTATED                                     8
  DEL PEAK 18(12Q12) WILD-TYPE                                  56
                              vv
clus                           PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK 18(12Q12) MUTATED                                       0
  DEL PEAK 18(12Q12) WILD-TYPE                                     5
                              vv
clus                           PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK 18(12Q12) MUTATED                                                  0
  DEL PEAK 18(12Q12) WILD-TYPE                                                2
D33V8, multiclass
                                                  clus
vv                                                 DEL PEAK 18(12Q12) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                       8
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                     0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                          0
                                                  clus
vv                                                 DEL PEAK 18(12Q12) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                        56
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                       5
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                            2
D33V9, continuous
D33V10, continuous
                              vv
clus                           R0 R1 RX
  DEL PEAK 18(12Q12) MUTATED    3  4  0
  DEL PEAK 18(12Q12) WILD-TYPE 40 20  2
D33V11, multiclass
    clus
vv   DEL PEAK 18(12Q12) MUTATED DEL PEAK 18(12Q12) WILD-TYPE
  R0                          3                           40
  R1                          4                           20
  RX                          0                            2
D33V12, continuous

Clustering(34) Variable = DEL PEAK 19(12Q24.33) MUTATION ANALYSIS
D34V1, survival
                                 sevent
clus2                              0  1
  DEL PEAK 19(12Q24.33) MUTATED    9  6
  DEL PEAK 19(12Q24.33) WILD-TYPE 31 23
  DEL PEAK 19(12Q24.33) MUTATED DEL PEAK 19(12Q24.33) WILD-TYPE 
                             15                              54 
  DEL PEAK 19(12Q24.33) MUTATED DEL PEAK 19(12Q24.33) WILD-TYPE 
                              6                              23 
$`DEL PEAK 19(12Q24.33) MUTATED`
TCGA-FB-A7DR TCGA-FZ-5920 TCGA-H6-8124 TCGA-HZ-7289 TCGA-HZ-7922 TCGA-HZ-7926 
        5.46         2.01        12.89         7.89         0.13         0.26 
TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7890 TCGA-IB-7893 
       15.65        27.98         4.04         3.62        19.66         3.85 
TCGA-IB-8127 TCGA-IB-A5SS TCGA-LB-A7SX 
       17.16        15.12         4.18 

$`DEL PEAK 19(12Q24.33) WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FZ-5922 TCGA-FZ-5923 
        0.13        12.66         2.47         0.03        36.20        20.81 
TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7923 TCGA-HZ-7924 
        7.66        13.02         0.92         0.66         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 
       11.87         0.62         0.79         0.69         3.95         0.92 
TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H 
        0.53         0.10         0.16         2.99         0.76         0.95 
TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 
        6.38         1.51        11.41        49.38         4.77        21.90 
TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7891 TCGA-IB-7897 
       15.35        19.82        43.79        15.81        16.04        15.98 
TCGA-IB-8126 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5ST TCGA-IB-A6UG 
        0.56        10.82         9.86         7.20         0.26         1.35 
TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        3.62         8.12        13.68        16.80        14.14        18.67 

  DEL PEAK 19(12Q24.33) MUTATED DEL PEAK 19(12Q24.33) WILD-TYPE 
                           0.13                            0.03 
  DEL PEAK 19(12Q24.33) MUTATED DEL PEAK 19(12Q24.33) WILD-TYPE 
                          27.98                           49.38 
  DEL PEAK 19(12Q24.33) MUTATED DEL PEAK 19(12Q24.33) WILD-TYPE 
                           5.46                            7.43 
[1] "0.1 - 28.0 (5.5)" "0.0 - 49.4 (7.4)"
                     TCGA-F2-6879                      TCGA-F2-6880 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-F2-7273                      TCGA-F2-7276 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-F2-A44G                      TCGA-F2-A44H 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-FB-A4P5                      TCGA-FB-A545 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-FB-A5VM                      TCGA-FB-A78T 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-FB-A7DR                      TCGA-FZ-5920 
  "DEL PEAK 19(12Q24.33) MUTATED"   "DEL PEAK 19(12Q24.33) MUTATED" 
                     TCGA-FZ-5922                      TCGA-FZ-5923 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-H6-8124                      TCGA-H6-A45N 
  "DEL PEAK 19(12Q24.33) MUTATED" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-H8-A6C1                      TCGA-HZ-7289 
"DEL PEAK 19(12Q24.33) WILD-TYPE"   "DEL PEAK 19(12Q24.33) MUTATED" 
                     TCGA-HZ-7918                      TCGA-HZ-7919 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-HZ-7922                      TCGA-HZ-7923 
  "DEL PEAK 19(12Q24.33) MUTATED" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-HZ-7924                      TCGA-HZ-7925 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-HZ-7926                      TCGA-HZ-8001 
  "DEL PEAK 19(12Q24.33) MUTATED" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-HZ-8002                      TCGA-HZ-8003 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-HZ-8005                      TCGA-HZ-8315 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-HZ-8317                      TCGA-HZ-8519 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-HZ-8636                      TCGA-HZ-8638 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-HZ-A49G                      TCGA-HZ-A49H 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-HZ-A4BH                      TCGA-HZ-A4BK 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-IB-7644                      TCGA-IB-7645 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-IB-7646                      TCGA-IB-7647 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-IB-7649                      TCGA-IB-7651 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-IB-7652                      TCGA-IB-7885 
  "DEL PEAK 19(12Q24.33) MUTATED"   "DEL PEAK 19(12Q24.33) MUTATED" 
                     TCGA-IB-7886                      TCGA-IB-7887 
  "DEL PEAK 19(12Q24.33) MUTATED"   "DEL PEAK 19(12Q24.33) MUTATED" 
                     TCGA-IB-7888                      TCGA-IB-7889 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-IB-7890                      TCGA-IB-7891 
  "DEL PEAK 19(12Q24.33) MUTATED" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-IB-7893                      TCGA-IB-7897 
  "DEL PEAK 19(12Q24.33) MUTATED" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-IB-8126                      TCGA-IB-8127 
"DEL PEAK 19(12Q24.33) WILD-TYPE"   "DEL PEAK 19(12Q24.33) MUTATED" 
                     TCGA-IB-A5SO                      TCGA-IB-A5SP 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-IB-A5SQ                      TCGA-IB-A5SS 
"DEL PEAK 19(12Q24.33) WILD-TYPE"   "DEL PEAK 19(12Q24.33) MUTATED" 
                     TCGA-IB-A5ST                      TCGA-IB-A6UG 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-LB-A7SX                      TCGA-OE-A75W 
  "DEL PEAK 19(12Q24.33) MUTATED" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-PZ-A5RE                      TCGA-Q3-A5QY 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-US-A779                      TCGA-US-A77E 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-US-A77J 
"DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-F2-6879                      TCGA-F2-6880 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-F2-7273                      TCGA-F2-7276 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-F2-A44G                      TCGA-F2-A44H 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-FB-A4P5                      TCGA-FB-A545 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-FB-A5VM                      TCGA-FB-A78T 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-FB-A7DR                      TCGA-FZ-5920 
  "DEL PEAK 19(12Q24.33) MUTATED"   "DEL PEAK 19(12Q24.33) MUTATED" 
                     TCGA-FZ-5922                      TCGA-FZ-5923 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-H6-8124                      TCGA-H6-A45N 
  "DEL PEAK 19(12Q24.33) MUTATED" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-H8-A6C1                      TCGA-HZ-7289 
"DEL PEAK 19(12Q24.33) WILD-TYPE"   "DEL PEAK 19(12Q24.33) MUTATED" 
                     TCGA-HZ-7918                      TCGA-HZ-7919 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-HZ-7922                      TCGA-HZ-7923 
  "DEL PEAK 19(12Q24.33) MUTATED" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-HZ-7924                      TCGA-HZ-7925 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-HZ-7926                      TCGA-HZ-8001 
  "DEL PEAK 19(12Q24.33) MUTATED" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-HZ-8002                      TCGA-HZ-8003 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-HZ-8005                      TCGA-HZ-8315 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-HZ-8317                      TCGA-HZ-8519 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-HZ-8636                      TCGA-HZ-8638 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-HZ-A49G                      TCGA-HZ-A49H 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-HZ-A4BH                      TCGA-HZ-A4BK 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-IB-7644                      TCGA-IB-7645 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-IB-7646                      TCGA-IB-7647 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-IB-7649                      TCGA-IB-7651 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-IB-7652                      TCGA-IB-7885 
  "DEL PEAK 19(12Q24.33) MUTATED"   "DEL PEAK 19(12Q24.33) MUTATED" 
                     TCGA-IB-7886                      TCGA-IB-7887 
  "DEL PEAK 19(12Q24.33) MUTATED"   "DEL PEAK 19(12Q24.33) MUTATED" 
                     TCGA-IB-7888                      TCGA-IB-7889 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-IB-7890                      TCGA-IB-7891 
  "DEL PEAK 19(12Q24.33) MUTATED" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-IB-7893                      TCGA-IB-7897 
  "DEL PEAK 19(12Q24.33) MUTATED" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-IB-8126                      TCGA-IB-8127 
"DEL PEAK 19(12Q24.33) WILD-TYPE"   "DEL PEAK 19(12Q24.33) MUTATED" 
                     TCGA-IB-A5SO                      TCGA-IB-A5SP 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-IB-A5SQ                      TCGA-IB-A5SS 
"DEL PEAK 19(12Q24.33) WILD-TYPE"   "DEL PEAK 19(12Q24.33) MUTATED" 
                     TCGA-IB-A5ST                      TCGA-IB-A6UG 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-LB-A7SX                      TCGA-OE-A75W 
  "DEL PEAK 19(12Q24.33) MUTATED" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-PZ-A5RE                      TCGA-Q3-A5QY 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-US-A779                      TCGA-US-A77E 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-US-A77J 
"DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-F2-6879                      TCGA-F2-6880 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-F2-7273                      TCGA-F2-7276 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-F2-A44G                      TCGA-F2-A44H 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-FB-A4P5                      TCGA-FB-A545 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-FB-A5VM                      TCGA-FB-A78T 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-FB-A7DR                      TCGA-FZ-5920 
  "DEL PEAK 19(12Q24.33) MUTATED"   "DEL PEAK 19(12Q24.33) MUTATED" 
                     TCGA-FZ-5922                      TCGA-FZ-5923 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-H6-8124                      TCGA-H6-A45N 
  "DEL PEAK 19(12Q24.33) MUTATED" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-H8-A6C1                      TCGA-HZ-7289 
"DEL PEAK 19(12Q24.33) WILD-TYPE"   "DEL PEAK 19(12Q24.33) MUTATED" 
                     TCGA-HZ-7918                      TCGA-HZ-7919 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-HZ-7922                      TCGA-HZ-7923 
  "DEL PEAK 19(12Q24.33) MUTATED" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-HZ-7924                      TCGA-HZ-7925 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-HZ-7926                      TCGA-HZ-8001 
  "DEL PEAK 19(12Q24.33) MUTATED" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-HZ-8002                      TCGA-HZ-8003 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-HZ-8005                      TCGA-HZ-8315 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-HZ-8317                      TCGA-HZ-8519 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-HZ-8636                      TCGA-HZ-8638 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-HZ-A49G                      TCGA-HZ-A49H 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-HZ-A4BH                      TCGA-HZ-A4BK 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-IB-7644                      TCGA-IB-7645 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-IB-7646                      TCGA-IB-7647 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-IB-7649                      TCGA-IB-7651 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-IB-7652                      TCGA-IB-7885 
  "DEL PEAK 19(12Q24.33) MUTATED"   "DEL PEAK 19(12Q24.33) MUTATED" 
                     TCGA-IB-7886                      TCGA-IB-7887 
  "DEL PEAK 19(12Q24.33) MUTATED"   "DEL PEAK 19(12Q24.33) MUTATED" 
                     TCGA-IB-7888                      TCGA-IB-7889 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-IB-7890                      TCGA-IB-7891 
  "DEL PEAK 19(12Q24.33) MUTATED" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-IB-7893                      TCGA-IB-7897 
  "DEL PEAK 19(12Q24.33) MUTATED" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-IB-8126                      TCGA-IB-8127 
"DEL PEAK 19(12Q24.33) WILD-TYPE"   "DEL PEAK 19(12Q24.33) MUTATED" 
                     TCGA-IB-A5SO                      TCGA-IB-A5SP 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-IB-A5SQ                      TCGA-IB-A5SS 
"DEL PEAK 19(12Q24.33) WILD-TYPE"   "DEL PEAK 19(12Q24.33) MUTATED" 
                     TCGA-IB-A5ST                      TCGA-IB-A6UG 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-LB-A7SX                      TCGA-OE-A75W 
  "DEL PEAK 19(12Q24.33) MUTATED" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-PZ-A5RE                      TCGA-Q3-A5QY 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-US-A779                      TCGA-US-A77E 
"DEL PEAK 19(12Q24.33) WILD-TYPE" "DEL PEAK 19(12Q24.33) WILD-TYPE" 
                     TCGA-US-A77J 
"DEL PEAK 19(12Q24.33) WILD-TYPE" 
[1] "hr=" "1"  
D34V2, continuous
                                 vv
clus                              STAGE IA STAGE IB STAGE IIA STAGE IIB
  DEL PEAK 19(12Q24.33) MUTATED          0        1         2        13
  DEL PEAK 19(12Q24.33) WILD-TYPE        2        3         9        37
                                 vv
clus                              STAGE III STAGE IV
  DEL PEAK 19(12Q24.33) MUTATED           0        0
  DEL PEAK 19(12Q24.33) WILD-TYPE         2        3
D34V3, multiclass
                                 vv
clus                              T1+T2 T3+T4
  DEL PEAK 19(12Q24.33) MUTATED       1    15
  DEL PEAK 19(12Q24.33) WILD-TYPE     6    50
D34V4, multiclass
       clus
vv      DEL PEAK 19(12Q24.33) MUTATED DEL PEAK 19(12Q24.33) WILD-TYPE
  T1+T2                             1                               6
  T3+T4                            15                              50
D34V5, binary
                                 cls
clus                               0  1
  DEL PEAK 19(12Q24.33) MUTATED    2 13
  DEL PEAK 19(12Q24.33) WILD-TYPE 16 40
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 19(12Q24.33) MUTATED      2   13
  DEL PEAK 19(12Q24.33) WILD-TYPE   16   40
   clus
vv  DEL PEAK 19(12Q24.33) MUTATED DEL PEAK 19(12Q24.33) WILD-TYPE
  0                             2                              16
  1                            13                              40
                                 vv
clus                              M0 M1 MX
  DEL PEAK 19(12Q24.33) MUTATED   11  0  5
  DEL PEAK 19(12Q24.33) WILD-TYPE 28  3 25
D34V6, multiclass
    clus
vv   DEL PEAK 19(12Q24.33) MUTATED DEL PEAK 19(12Q24.33) WILD-TYPE
  M0                            11                              28
  M1                             0                               3
  MX                             5                              25
D34V7, binary
                                 cls
clus                               0  1
  DEL PEAK 19(12Q24.33) MUTATED    7  9
  DEL PEAK 19(12Q24.33) WILD-TYPE 29 27
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 19(12Q24.33) MUTATED      7    9
  DEL PEAK 19(12Q24.33) WILD-TYPE   29   27
        clus
vv       DEL PEAK 19(12Q24.33) MUTATED DEL PEAK 19(12Q24.33) WILD-TYPE
  FEMALE                             7                              29
  MALE                               9                              27
                                 vv
clus                              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK 19(12Q24.33) MUTATED                                    14
  DEL PEAK 19(12Q24.33) WILD-TYPE                                  50
                                 vv
clus                              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK 19(12Q24.33) MUTATED                                       1
  DEL PEAK 19(12Q24.33) WILD-TYPE                                     4
                                 vv
clus                              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK 19(12Q24.33) MUTATED                                                  1
  DEL PEAK 19(12Q24.33) WILD-TYPE                                                1
D34V8, multiclass
                                                  clus
vv                                                 DEL PEAK 19(12Q24.33) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                         14
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                        1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                             1
                                                  clus
vv                                                 DEL PEAK 19(12Q24.33) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                           50
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                               1
D34V9, continuous
D34V10, continuous
                                 vv
clus                              R0 R1 RX
  DEL PEAK 19(12Q24.33) MUTATED    8  6  2
  DEL PEAK 19(12Q24.33) WILD-TYPE 35 18  0
D34V11, multiclass
    clus
vv   DEL PEAK 19(12Q24.33) MUTATED DEL PEAK 19(12Q24.33) WILD-TYPE
  R0                             8                              35
  R1                             6                              18
  RX                             2                               0
D34V12, continuous

Clustering(35) Variable = DEL PEAK 20(16Q23.1) MUTATION ANALYSIS
D35V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 20(16Q23.1) MUTATED    3  1
  DEL PEAK 20(16Q23.1) WILD-TYPE 37 28
  DEL PEAK 20(16Q23.1) MUTATED DEL PEAK 20(16Q23.1) WILD-TYPE 
                             4                             65 
  DEL PEAK 20(16Q23.1) MUTATED DEL PEAK 20(16Q23.1) WILD-TYPE 
                             1                             28 
$`DEL PEAK 20(16Q23.1) MUTATED`
TCGA-FB-A7DR TCGA-FZ-5923 TCGA-HZ-7289 TCGA-HZ-7918 
        5.46        20.81         7.89         0.92 

$`DEL PEAK 20(16Q23.1) WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FZ-5920 TCGA-FZ-5922 
        0.13        12.66         2.47         0.03         2.01        36.20 
TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 
       12.89         7.66        13.02         0.66         0.13         0.26 
TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 
       12.13        11.87         0.26         0.62         0.79         0.69 
TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 TCGA-HZ-8638 
        3.95         0.92         0.53         0.10         0.16         2.99 
TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 
        0.76         0.95         6.38         1.51        11.41        49.38 
TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 
        4.77        21.90        15.35        19.82        15.65        27.98 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
        4.04         3.62        43.79        15.81        19.66        16.04 
TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
        3.85        15.98         0.56        17.16        10.82         9.86 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        7.20        15.12         0.26         1.35         4.18         3.62 
TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
        8.12        13.68        16.80        14.14        18.67 

  DEL PEAK 20(16Q23.1) MUTATED DEL PEAK 20(16Q23.1) WILD-TYPE 
                          0.92                           0.03 
  DEL PEAK 20(16Q23.1) MUTATED DEL PEAK 20(16Q23.1) WILD-TYPE 
                         20.81                          49.38 
  DEL PEAK 20(16Q23.1) MUTATED DEL PEAK 20(16Q23.1) WILD-TYPE 
                         6.675                          7.200 
[1] "0.9 - 20.8 (6.7)" "0.0 - 49.4 (7.2)"
                    TCGA-F2-6879                     TCGA-F2-6880 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-FB-A5VM                     TCGA-FB-A78T 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-FB-A7DR                     TCGA-FZ-5920 
  "DEL PEAK 20(16Q23.1) MUTATED" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-FZ-5922                     TCGA-FZ-5923 
"DEL PEAK 20(16Q23.1) WILD-TYPE"   "DEL PEAK 20(16Q23.1) MUTATED" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-H8-A6C1                     TCGA-HZ-7289 
"DEL PEAK 20(16Q23.1) WILD-TYPE"   "DEL PEAK 20(16Q23.1) MUTATED" 
                    TCGA-HZ-7918                     TCGA-HZ-7919 
  "DEL PEAK 20(16Q23.1) MUTATED" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-HZ-7922                     TCGA-HZ-7923 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-HZ-7924                     TCGA-HZ-7925 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-HZ-7926                     TCGA-HZ-8001 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-HZ-8002                     TCGA-HZ-8003 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-HZ-8005                     TCGA-HZ-8315 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-HZ-8317                     TCGA-HZ-8519 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-HZ-8636                     TCGA-HZ-8638 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-HZ-A49G                     TCGA-HZ-A49H 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-HZ-A4BH                     TCGA-HZ-A4BK 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-IB-7644                     TCGA-IB-7645 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-IB-7646                     TCGA-IB-7647 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-IB-7649                     TCGA-IB-7651 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-IB-7652                     TCGA-IB-7885 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-IB-7886                     TCGA-IB-7887 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-IB-7888                     TCGA-IB-7889 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-IB-7890                     TCGA-IB-7891 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-IB-7893                     TCGA-IB-7897 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-IB-8126                     TCGA-IB-8127 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-IB-A5SO                     TCGA-IB-A5SP 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-IB-A5SQ                     TCGA-IB-A5SS 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-IB-A5ST                     TCGA-IB-A6UG 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-LB-A7SX                     TCGA-OE-A75W 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-PZ-A5RE                     TCGA-Q3-A5QY 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-US-A779                     TCGA-US-A77E 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-US-A77J 
"DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-F2-6879                     TCGA-F2-6880 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-FB-A5VM                     TCGA-FB-A78T 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-FB-A7DR                     TCGA-FZ-5920 
  "DEL PEAK 20(16Q23.1) MUTATED" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-FZ-5922                     TCGA-FZ-5923 
"DEL PEAK 20(16Q23.1) WILD-TYPE"   "DEL PEAK 20(16Q23.1) MUTATED" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-H8-A6C1                     TCGA-HZ-7289 
"DEL PEAK 20(16Q23.1) WILD-TYPE"   "DEL PEAK 20(16Q23.1) MUTATED" 
                    TCGA-HZ-7918                     TCGA-HZ-7919 
  "DEL PEAK 20(16Q23.1) MUTATED" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-HZ-7922                     TCGA-HZ-7923 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-HZ-7924                     TCGA-HZ-7925 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-HZ-7926                     TCGA-HZ-8001 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-HZ-8002                     TCGA-HZ-8003 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-HZ-8005                     TCGA-HZ-8315 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-HZ-8317                     TCGA-HZ-8519 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-HZ-8636                     TCGA-HZ-8638 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-HZ-A49G                     TCGA-HZ-A49H 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-HZ-A4BH                     TCGA-HZ-A4BK 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-IB-7644                     TCGA-IB-7645 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-IB-7646                     TCGA-IB-7647 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-IB-7649                     TCGA-IB-7651 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-IB-7652                     TCGA-IB-7885 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-IB-7886                     TCGA-IB-7887 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-IB-7888                     TCGA-IB-7889 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-IB-7890                     TCGA-IB-7891 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-IB-7893                     TCGA-IB-7897 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-IB-8126                     TCGA-IB-8127 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-IB-A5SO                     TCGA-IB-A5SP 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-IB-A5SQ                     TCGA-IB-A5SS 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-IB-A5ST                     TCGA-IB-A6UG 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-LB-A7SX                     TCGA-OE-A75W 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-PZ-A5RE                     TCGA-Q3-A5QY 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-US-A779                     TCGA-US-A77E 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-US-A77J 
"DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-F2-6879                     TCGA-F2-6880 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-FB-A5VM                     TCGA-FB-A78T 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-FB-A7DR                     TCGA-FZ-5920 
  "DEL PEAK 20(16Q23.1) MUTATED" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-FZ-5922                     TCGA-FZ-5923 
"DEL PEAK 20(16Q23.1) WILD-TYPE"   "DEL PEAK 20(16Q23.1) MUTATED" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-H8-A6C1                     TCGA-HZ-7289 
"DEL PEAK 20(16Q23.1) WILD-TYPE"   "DEL PEAK 20(16Q23.1) MUTATED" 
                    TCGA-HZ-7918                     TCGA-HZ-7919 
  "DEL PEAK 20(16Q23.1) MUTATED" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-HZ-7922                     TCGA-HZ-7923 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-HZ-7924                     TCGA-HZ-7925 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-HZ-7926                     TCGA-HZ-8001 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-HZ-8002                     TCGA-HZ-8003 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-HZ-8005                     TCGA-HZ-8315 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-HZ-8317                     TCGA-HZ-8519 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-HZ-8636                     TCGA-HZ-8638 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-HZ-A49G                     TCGA-HZ-A49H 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-HZ-A4BH                     TCGA-HZ-A4BK 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-IB-7644                     TCGA-IB-7645 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-IB-7646                     TCGA-IB-7647 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-IB-7649                     TCGA-IB-7651 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-IB-7652                     TCGA-IB-7885 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-IB-7886                     TCGA-IB-7887 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-IB-7888                     TCGA-IB-7889 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-IB-7890                     TCGA-IB-7891 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-IB-7893                     TCGA-IB-7897 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-IB-8126                     TCGA-IB-8127 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-IB-A5SO                     TCGA-IB-A5SP 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-IB-A5SQ                     TCGA-IB-A5SS 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-IB-A5ST                     TCGA-IB-A6UG 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-LB-A7SX                     TCGA-OE-A75W 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-PZ-A5RE                     TCGA-Q3-A5QY 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-US-A779                     TCGA-US-A77E 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-US-A77J 
"DEL PEAK 20(16Q23.1) WILD-TYPE" 
[1] "hr=" "1.9"
D35V2, continuous
                                vv
clus                             STAGE IA STAGE IB STAGE IIA STAGE IIB
  DEL PEAK 20(16Q23.1) MUTATED          0        0         1         2
  DEL PEAK 20(16Q23.1) WILD-TYPE        2        4        10        48
                                vv
clus                             STAGE III STAGE IV
  DEL PEAK 20(16Q23.1) MUTATED           0        1
  DEL PEAK 20(16Q23.1) WILD-TYPE         2        2
D35V3, multiclass
                                vv
clus                             T1+T2 T3+T4
  DEL PEAK 20(16Q23.1) MUTATED       0     4
  DEL PEAK 20(16Q23.1) WILD-TYPE     7    61
D35V4, multiclass
       clus
vv      DEL PEAK 20(16Q23.1) MUTATED DEL PEAK 20(16Q23.1) WILD-TYPE
  T1+T2                            0                              7
  T3+T4                            4                             61
D35V5, binary
                                cls
clus                              0  1
  DEL PEAK 20(16Q23.1) MUTATED    0  3
  DEL PEAK 20(16Q23.1) WILD-TYPE 18 50
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 20(16Q23.1) MUTATED      0    3
  DEL PEAK 20(16Q23.1) WILD-TYPE   18   50
   clus
vv  DEL PEAK 20(16Q23.1) MUTATED DEL PEAK 20(16Q23.1) WILD-TYPE
  0                            0                             18
  1                            3                             50
                                vv
clus                             M0 M1 MX
  DEL PEAK 20(16Q23.1) MUTATED    2  1  1
  DEL PEAK 20(16Q23.1) WILD-TYPE 37  2 29
D35V6, multiclass
    clus
vv   DEL PEAK 20(16Q23.1) MUTATED DEL PEAK 20(16Q23.1) WILD-TYPE
  M0                            2                             37
  M1                            1                              2
  MX                            1                             29
D35V7, binary
                                cls
clus                              0  1
  DEL PEAK 20(16Q23.1) MUTATED    0  4
  DEL PEAK 20(16Q23.1) WILD-TYPE 36 32
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 20(16Q23.1) MUTATED      0    4
  DEL PEAK 20(16Q23.1) WILD-TYPE   36   32
        clus
vv       DEL PEAK 20(16Q23.1) MUTATED DEL PEAK 20(16Q23.1) WILD-TYPE
  FEMALE                            0                             36
  MALE                              4                             32
                                vv
clus                             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK 20(16Q23.1) MUTATED                                     2
  DEL PEAK 20(16Q23.1) WILD-TYPE                                  62
                                vv
clus                             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK 20(16Q23.1) MUTATED                                       1
  DEL PEAK 20(16Q23.1) WILD-TYPE                                     4
                                vv
clus                             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK 20(16Q23.1) MUTATED                                                  1
  DEL PEAK 20(16Q23.1) WILD-TYPE                                                1
D35V8, multiclass
                                                  clus
vv                                                 DEL PEAK 20(16Q23.1) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                         2
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                       1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                            1
                                                  clus
vv                                                 DEL PEAK 20(16Q23.1) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                          62
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                         4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                              1
D35V9, continuous
[1] "Remove cluster labels:"       "DEL PEAK 20(16Q23.1) MUTATED"
clus
  DEL PEAK 20(16Q23.1) MUTATED DEL PEAK 20(16Q23.1) WILD-TYPE 
                             1                             20 
                    TCGA-F2-6880                     TCGA-FB-A4P5 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-FB-A5VM                     TCGA-FB-A78T 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-H8-A6C1                     TCGA-IB-7644 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-IB-7649                     TCGA-IB-7651 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-IB-7885                     TCGA-IB-7886 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-IB-7887                     TCGA-IB-7891 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-IB-8126                     TCGA-IB-8127 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-IB-A5SS                     TCGA-IB-A6UG 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-LB-A7SX                     TCGA-OE-A75W 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
D35V10, continuous
[1] "Remove cluster labels:"       "DEL PEAK 20(16Q23.1) MUTATED"
clus
  DEL PEAK 20(16Q23.1) MUTATED DEL PEAK 20(16Q23.1) WILD-TYPE 
                             1                             17 
                    TCGA-FB-A4P5                     TCGA-FB-A5VM 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-FB-A78T                     TCGA-H6-8124 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-H8-A6C1                     TCGA-IB-7644 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-IB-7649                     TCGA-IB-7651 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-IB-7885                     TCGA-IB-7886 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-IB-7891                     TCGA-IB-8126 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-IB-8127                     TCGA-IB-A5SS 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-IB-A6UG                     TCGA-LB-A7SX 
"DEL PEAK 20(16Q23.1) WILD-TYPE" "DEL PEAK 20(16Q23.1) WILD-TYPE" 
                    TCGA-OE-A75W 
"DEL PEAK 20(16Q23.1) WILD-TYPE" 
                                vv
clus                             R0 R1 RX
  DEL PEAK 20(16Q23.1) MUTATED    3  0  1
  DEL PEAK 20(16Q23.1) WILD-TYPE 40 24  1
D35V11, multiclass
    clus
vv   DEL PEAK 20(16Q23.1) MUTATED DEL PEAK 20(16Q23.1) WILD-TYPE
  R0                            3                             40
  R1                            0                             24
  RX                            1                              1
D35V12, continuous

Clustering(36) Variable = DEL PEAK 21(17Q22) MUTATION ANALYSIS
D36V1, survival
                              sevent
clus2                           0  1
  DEL PEAK 21(17Q22) MUTATED   11  9
  DEL PEAK 21(17Q22) WILD-TYPE 29 20
  DEL PEAK 21(17Q22) MUTATED DEL PEAK 21(17Q22) WILD-TYPE 
                          20                           49 
  DEL PEAK 21(17Q22) MUTATED DEL PEAK 21(17Q22) WILD-TYPE 
                           9                           20 
$`DEL PEAK 21(17Q22) MUTATED`
TCGA-F2-6879 TCGA-FB-A545 TCGA-FZ-5920 TCGA-HZ-7289 TCGA-HZ-7919 TCGA-HZ-7922 
       10.98        12.66         2.01         7.89         0.66         0.13 
TCGA-HZ-8005 TCGA-HZ-8636 TCGA-HZ-A4BH TCGA-IB-7644 TCGA-IB-7646 TCGA-IB-7652 
        3.95         0.16         6.38        11.41         4.77        15.65 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-8127 TCGA-IB-A5SP TCGA-LB-A7SX 
        4.04         3.62        43.79        17.16         9.86         4.18 
TCGA-OE-A75W TCGA-US-A779 
        3.62        16.80 

$`DEL PEAK 21(17Q22) WILD-TYPE`
TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
        9.70        11.84         7.10         5.03        19.27         0.13 
TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 
        2.47         0.03         5.46        36.20        20.81        12.89 
TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7918 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        7.66        13.02         0.92         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8317 
        0.26         0.62         0.79         0.69         0.92         0.53 
TCGA-HZ-8519 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BK TCGA-IB-7645 
        0.10         2.99         0.76         0.95         1.51        49.38 
TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7885 TCGA-IB-7889 TCGA-IB-7890 
       21.90        15.35        19.82        27.98        15.81        19.66 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-A5SO TCGA-IB-A5SQ 
       16.04         3.85        15.98         0.56        10.82         7.20 
TCGA-IB-A5SS TCGA-IB-A5ST TCGA-IB-A6UG TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A77E 
       15.12         0.26         1.35         8.12        13.68        14.14 
TCGA-US-A77J 
       18.67 

  DEL PEAK 21(17Q22) MUTATED DEL PEAK 21(17Q22) WILD-TYPE 
                        0.13                         0.03 
  DEL PEAK 21(17Q22) MUTATED DEL PEAK 21(17Q22) WILD-TYPE 
                       43.79                        49.38 
  DEL PEAK 21(17Q22) MUTATED DEL PEAK 21(17Q22) WILD-TYPE 
                       5.575                        7.660 
[1] "0.1 - 43.8 (5.6)" "0.0 - 49.4 (7.7)"
                  TCGA-F2-6879                   TCGA-F2-6880 
  "DEL PEAK 21(17Q22) MUTATED" "DEL PEAK 21(17Q22) WILD-TYPE" 
                  TCGA-F2-7273                   TCGA-F2-7276 
"DEL PEAK 21(17Q22) WILD-TYPE" "DEL PEAK 21(17Q22) WILD-TYPE" 
                  TCGA-F2-A44G                   TCGA-F2-A44H 
"DEL PEAK 21(17Q22) WILD-TYPE" "DEL PEAK 21(17Q22) WILD-TYPE" 
                  TCGA-FB-A4P5                   TCGA-FB-A545 
"DEL PEAK 21(17Q22) WILD-TYPE"   "DEL PEAK 21(17Q22) MUTATED" 
                  TCGA-FB-A5VM                   TCGA-FB-A78T 
"DEL PEAK 21(17Q22) WILD-TYPE" "DEL PEAK 21(17Q22) WILD-TYPE" 
                  TCGA-FB-A7DR                   TCGA-FZ-5920 
"DEL PEAK 21(17Q22) WILD-TYPE"   "DEL PEAK 21(17Q22) MUTATED" 
                  TCGA-FZ-5922                   TCGA-FZ-5923 
"DEL PEAK 21(17Q22) WILD-TYPE" "DEL PEAK 21(17Q22) WILD-TYPE" 
                  TCGA-H6-8124                   TCGA-H6-A45N 
"DEL PEAK 21(17Q22) WILD-TYPE" "DEL PEAK 21(17Q22) WILD-TYPE" 
                  TCGA-H8-A6C1                   TCGA-HZ-7289 
"DEL PEAK 21(17Q22) WILD-TYPE"   "DEL PEAK 21(17Q22) MUTATED" 
                  TCGA-HZ-7918                   TCGA-HZ-7919 
"DEL PEAK 21(17Q22) WILD-TYPE"   "DEL PEAK 21(17Q22) MUTATED" 
                  TCGA-HZ-7922                   TCGA-HZ-7923 
  "DEL PEAK 21(17Q22) MUTATED" "DEL PEAK 21(17Q22) WILD-TYPE" 
                  TCGA-HZ-7924                   TCGA-HZ-7925 
"DEL PEAK 21(17Q22) WILD-TYPE" "DEL PEAK 21(17Q22) WILD-TYPE" 
                  TCGA-HZ-7926                   TCGA-HZ-8001 
"DEL PEAK 21(17Q22) WILD-TYPE" "DEL PEAK 21(17Q22) WILD-TYPE" 
                  TCGA-HZ-8002                   TCGA-HZ-8003 
"DEL PEAK 21(17Q22) WILD-TYPE" "DEL PEAK 21(17Q22) WILD-TYPE" 
                  TCGA-HZ-8005                   TCGA-HZ-8315 
  "DEL PEAK 21(17Q22) MUTATED" "DEL PEAK 21(17Q22) WILD-TYPE" 
                  TCGA-HZ-8317                   TCGA-HZ-8519 
"DEL PEAK 21(17Q22) WILD-TYPE" "DEL PEAK 21(17Q22) WILD-TYPE" 
                  TCGA-HZ-8636                   TCGA-HZ-8638 
  "DEL PEAK 21(17Q22) MUTATED" "DEL PEAK 21(17Q22) WILD-TYPE" 
                  TCGA-HZ-A49G                   TCGA-HZ-A49H 
"DEL PEAK 21(17Q22) WILD-TYPE" "DEL PEAK 21(17Q22) WILD-TYPE" 
                  TCGA-HZ-A4BH                   TCGA-HZ-A4BK 
  "DEL PEAK 21(17Q22) MUTATED" "DEL PEAK 21(17Q22) WILD-TYPE" 
                  TCGA-IB-7644                   TCGA-IB-7645 
  "DEL PEAK 21(17Q22) MUTATED" "DEL PEAK 21(17Q22) WILD-TYPE" 
                  TCGA-IB-7646                   TCGA-IB-7647 
  "DEL PEAK 21(17Q22) MUTATED" "DEL PEAK 21(17Q22) WILD-TYPE" 
                  TCGA-IB-7649                   TCGA-IB-7651 
"DEL PEAK 21(17Q22) WILD-TYPE" "DEL PEAK 21(17Q22) WILD-TYPE" 
                  TCGA-IB-7652                   TCGA-IB-7885 
  "DEL PEAK 21(17Q22) MUTATED" "DEL PEAK 21(17Q22) WILD-TYPE" 
                  TCGA-IB-7886                   TCGA-IB-7887 
  "DEL PEAK 21(17Q22) MUTATED"   "DEL PEAK 21(17Q22) MUTATED" 
                  TCGA-IB-7888                   TCGA-IB-7889 
  "DEL PEAK 21(17Q22) MUTATED" "DEL PEAK 21(17Q22) WILD-TYPE" 
                  TCGA-IB-7890                   TCGA-IB-7891 
"DEL PEAK 21(17Q22) WILD-TYPE" "DEL PEAK 21(17Q22) WILD-TYPE" 
                  TCGA-IB-7893                   TCGA-IB-7897 
"DEL PEAK 21(17Q22) WILD-TYPE" "DEL PEAK 21(17Q22) WILD-TYPE" 
                  TCGA-IB-8126                   TCGA-IB-8127 
"DEL PEAK 21(17Q22) WILD-TYPE"   "DEL PEAK 21(17Q22) MUTATED" 
                  TCGA-IB-A5SO                   TCGA-IB-A5SP 
"DEL PEAK 21(17Q22) WILD-TYPE"   "DEL PEAK 21(17Q22) MUTATED" 
                  TCGA-IB-A5SQ                   TCGA-IB-A5SS 
"DEL PEAK 21(17Q22) WILD-TYPE" "DEL PEAK 21(17Q22) WILD-TYPE" 
                  TCGA-IB-A5ST                   TCGA-IB-A6UG 
"DEL PEAK 21(17Q22) WILD-TYPE" "DEL PEAK 21(17Q22) WILD-TYPE" 
                  TCGA-LB-A7SX                   TCGA-OE-A75W 
  "DEL PEAK 21(17Q22) MUTATED"   "DEL PEAK 21(17Q22) MUTATED" 
                  TCGA-PZ-A5RE                   TCGA-Q3-A5QY 
"DEL PEAK 21(17Q22) WILD-TYPE" "DEL PEAK 21(17Q22) WILD-TYPE" 
                  TCGA-US-A779                   TCGA-US-A77E 
  "DEL PEAK 21(17Q22) MUTATED" "DEL PEAK 21(17Q22) WILD-TYPE" 
                  TCGA-US-A77J 
"DEL PEAK 21(17Q22) WILD-TYPE" 
                  TCGA-F2-6879                   TCGA-F2-6880 
  "DEL PEAK 21(17Q22) MUTATED" "DEL PEAK 21(17Q22) WILD-TYPE" 
                  TCGA-F2-7273                   TCGA-F2-7276 
"DEL PEAK 21(17Q22) WILD-TYPE" "DEL PEAK 21(17Q22) WILD-TYPE" 
                  TCGA-F2-A44G                   TCGA-F2-A44H 
"DEL PEAK 21(17Q22) WILD-TYPE" "DEL PEAK 21(17Q22) WILD-TYPE" 
                  TCGA-FB-A4P5                   TCGA-FB-A545 
"DEL PEAK 21(17Q22) WILD-TYPE"   "DEL PEAK 21(17Q22) MUTATED" 
                  TCGA-FB-A5VM                   TCGA-FB-A78T 
"DEL PEAK 21(17Q22) WILD-TYPE" "DEL PEAK 21(17Q22) WILD-TYPE" 
                  TCGA-FB-A7DR                   TCGA-FZ-5920 
"DEL PEAK 21(17Q22) WILD-TYPE"   "DEL PEAK 21(17Q22) MUTATED" 
                  TCGA-FZ-5922                   TCGA-FZ-5923 
"DEL PEAK 21(17Q22) WILD-TYPE" "DEL PEAK 21(17Q22) WILD-TYPE" 
                  TCGA-H6-8124                   TCGA-H6-A45N 
"DEL PEAK 21(17Q22) WILD-TYPE" "DEL PEAK 21(17Q22) WILD-TYPE" 
                  TCGA-H8-A6C1                   TCGA-HZ-7289 
"DEL PEAK 21(17Q22) WILD-TYPE"   "DEL PEAK 21(17Q22) MUTATED" 
                  TCGA-HZ-7918                   TCGA-HZ-7919 
"DEL PEAK 21(17Q22) WILD-TYPE"   "DEL PEAK 21(17Q22) MUTATED" 
                  TCGA-HZ-7922                   TCGA-HZ-7923 
  "DEL PEAK 21(17Q22) MUTATED" "DEL PEAK 21(17Q22) WILD-TYPE" 
                  TCGA-HZ-7924                   TCGA-HZ-7925 
"DEL PEAK 21(17Q22) WILD-TYPE" "DEL PEAK 21(17Q22) WILD-TYPE" 
                  TCGA-HZ-7926                   TCGA-HZ-8001 
"DEL PEAK 21(17Q22) WILD-TYPE" "DEL PEAK 21(17Q22) WILD-TYPE" 
                  TCGA-HZ-8002                   TCGA-HZ-8003 
"DEL PEAK 21(17Q22) WILD-TYPE" "DEL PEAK 21(17Q22) WILD-TYPE" 
                  TCGA-HZ-8005                   TCGA-HZ-8315 
  "DEL PEAK 21(17Q22) MUTATED" "DEL PEAK 21(17Q22) WILD-TYPE" 
                  TCGA-HZ-8317                   TCGA-HZ-8519 
"DEL PEAK 21(17Q22) WILD-TYPE" "DEL PEAK 21(17Q22) WILD-TYPE" 
                  TCGA-HZ-8636                   TCGA-HZ-8638 
  "DEL PEAK 21(17Q22) MUTATED" "DEL PEAK 21(17Q22) WILD-TYPE" 
                  TCGA-HZ-A49G                   TCGA-HZ-A49H 
"DEL PEAK 21(17Q22) WILD-TYPE" "DEL PEAK 21(17Q22) WILD-TYPE" 
                  TCGA-HZ-A4BH                   TCGA-HZ-A4BK 
  "DEL PEAK 21(17Q22) MUTATED" "DEL PEAK 21(17Q22) WILD-TYPE" 
                  TCGA-IB-7644                   TCGA-IB-7645 
  "DEL PEAK 21(17Q22) MUTATED" "DEL PEAK 21(17Q22) WILD-TYPE" 
                  TCGA-IB-7646                   TCGA-IB-7647 
  "DEL PEAK 21(17Q22) MUTATED" "DEL PEAK 21(17Q22) WILD-TYPE" 
                  TCGA-IB-7649                   TCGA-IB-7651 
"DEL PEAK 21(17Q22) WILD-TYPE" "DEL PEAK 21(17Q22) WILD-TYPE" 
                  TCGA-IB-7652                   TCGA-IB-7885 
  "DEL PEAK 21(17Q22) MUTATED" "DEL PEAK 21(17Q22) WILD-TYPE" 
                  TCGA-IB-7886                   TCGA-IB-7887 
  "DEL PEAK 21(17Q22) MUTATED"   "DEL PEAK 21(17Q22) MUTATED" 
                  TCGA-IB-7888                   TCGA-IB-7889 
  "DEL PEAK 21(17Q22) MUTATED" "DEL PEAK 21(17Q22) WILD-TYPE" 
                  TCGA-IB-7890                   TCGA-IB-7891 
"DEL PEAK 21(17Q22) WILD-TYPE" "DEL PEAK 21(17Q22) WILD-TYPE" 
                  TCGA-IB-7893                   TCGA-IB-7897 
"DEL PEAK 21(17Q22) WILD-TYPE" "DEL PEAK 21(17Q22) WILD-TYPE" 
                  TCGA-IB-8126                   TCGA-IB-8127 
"DEL PEAK 21(17Q22) WILD-TYPE"   "DEL PEAK 21(17Q22) MUTATED" 
                  TCGA-IB-A5SO                   TCGA-IB-A5SP 
"DEL PEAK 21(17Q22) WILD-TYPE"   "DEL PEAK 21(17Q22) MUTATED" 
                  TCGA-IB-A5SQ                   TCGA-IB-A5SS 
"DEL PEAK 21(17Q22) WILD-TYPE" "DEL PEAK 21(17Q22) WILD-TYPE" 
                  TCGA-IB-A5ST                   TCGA-IB-A6UG 
"DEL PEAK 21(17Q22) WILD-TYPE" "DEL PEAK 21(17Q22) WILD-TYPE" 
                  TCGA-LB-A7SX                   TCGA-OE-A75W 
  "DEL PEAK 21(17Q22) MUTATED"   "DEL PEAK 21(17Q22) MUTATED" 
                  TCGA-PZ-A5RE                   TCGA-Q3-A5QY 
"DEL PEAK 21(17Q22) WILD-TYPE" "DEL PEAK 21(17Q22) WILD-TYPE" 
                  TCGA-US-A779                   TCGA-US-A77E 
  "DEL PEAK 21(17Q22) MUTATED" "DEL PEAK 21(17Q22) WILD-TYPE" 
                  TCGA-US-A77J 
"DEL PEAK 21(17Q22) WILD-TYPE" 
                  TCGA-F2-6879                   TCGA-F2-6880 
  "DEL PEAK 21(17Q22) MUTATED" "DEL PEAK 21(17Q22) WILD-TYPE" 
                  TCGA-F2-7273                   TCGA-F2-7276 
"DEL PEAK 21(17Q22) WILD-TYPE" "DEL PEAK 21(17Q22) WILD-TYPE" 
                  TCGA-F2-A44G                   TCGA-F2-A44H 
"DEL PEAK 21(17Q22) WILD-TYPE" "DEL PEAK 21(17Q22) WILD-TYPE" 
                  TCGA-FB-A4P5                   TCGA-FB-A545 
"DEL PEAK 21(17Q22) WILD-TYPE"   "DEL PEAK 21(17Q22) MUTATED" 
                  TCGA-FB-A5VM                   TCGA-FB-A78T 
"DEL PEAK 21(17Q22) WILD-TYPE" "DEL PEAK 21(17Q22) WILD-TYPE" 
                  TCGA-FB-A7DR                   TCGA-FZ-5920 
"DEL PEAK 21(17Q22) WILD-TYPE"   "DEL PEAK 21(17Q22) MUTATED" 
                  TCGA-FZ-5922                   TCGA-FZ-5923 
"DEL PEAK 21(17Q22) WILD-TYPE" "DEL PEAK 21(17Q22) WILD-TYPE" 
                  TCGA-H6-8124                   TCGA-H6-A45N 
"DEL PEAK 21(17Q22) WILD-TYPE" "DEL PEAK 21(17Q22) WILD-TYPE" 
                  TCGA-H8-A6C1                   TCGA-HZ-7289 
"DEL PEAK 21(17Q22) WILD-TYPE"   "DEL PEAK 21(17Q22) MUTATED" 
                  TCGA-HZ-7918                   TCGA-HZ-7919 
"DEL PEAK 21(17Q22) WILD-TYPE"   "DEL PEAK 21(17Q22) MUTATED" 
                  TCGA-HZ-7922                   TCGA-HZ-7923 
  "DEL PEAK 21(17Q22) MUTATED" "DEL PEAK 21(17Q22) WILD-TYPE" 
                  TCGA-HZ-7924                   TCGA-HZ-7925 
"DEL PEAK 21(17Q22) WILD-TYPE" "DEL PEAK 21(17Q22) WILD-TYPE" 
                  TCGA-HZ-7926                   TCGA-HZ-8001 
"DEL PEAK 21(17Q22) WILD-TYPE" "DEL PEAK 21(17Q22) WILD-TYPE" 
                  TCGA-HZ-8002                   TCGA-HZ-8003 
"DEL PEAK 21(17Q22) WILD-TYPE" "DEL PEAK 21(17Q22) WILD-TYPE" 
                  TCGA-HZ-8005                   TCGA-HZ-8315 
  "DEL PEAK 21(17Q22) MUTATED" "DEL PEAK 21(17Q22) WILD-TYPE" 
                  TCGA-HZ-8317                   TCGA-HZ-8519 
"DEL PEAK 21(17Q22) WILD-TYPE" "DEL PEAK 21(17Q22) WILD-TYPE" 
                  TCGA-HZ-8636                   TCGA-HZ-8638 
  "DEL PEAK 21(17Q22) MUTATED" "DEL PEAK 21(17Q22) WILD-TYPE" 
                  TCGA-HZ-A49G                   TCGA-HZ-A49H 
"DEL PEAK 21(17Q22) WILD-TYPE" "DEL PEAK 21(17Q22) WILD-TYPE" 
                  TCGA-HZ-A4BH                   TCGA-HZ-A4BK 
  "DEL PEAK 21(17Q22) MUTATED" "DEL PEAK 21(17Q22) WILD-TYPE" 
                  TCGA-IB-7644                   TCGA-IB-7645 
  "DEL PEAK 21(17Q22) MUTATED" "DEL PEAK 21(17Q22) WILD-TYPE" 
                  TCGA-IB-7646                   TCGA-IB-7647 
  "DEL PEAK 21(17Q22) MUTATED" "DEL PEAK 21(17Q22) WILD-TYPE" 
                  TCGA-IB-7649                   TCGA-IB-7651 
"DEL PEAK 21(17Q22) WILD-TYPE" "DEL PEAK 21(17Q22) WILD-TYPE" 
                  TCGA-IB-7652                   TCGA-IB-7885 
  "DEL PEAK 21(17Q22) MUTATED" "DEL PEAK 21(17Q22) WILD-TYPE" 
                  TCGA-IB-7886                   TCGA-IB-7887 
  "DEL PEAK 21(17Q22) MUTATED"   "DEL PEAK 21(17Q22) MUTATED" 
                  TCGA-IB-7888                   TCGA-IB-7889 
  "DEL PEAK 21(17Q22) MUTATED" "DEL PEAK 21(17Q22) WILD-TYPE" 
                  TCGA-IB-7890                   TCGA-IB-7891 
"DEL PEAK 21(17Q22) WILD-TYPE" "DEL PEAK 21(17Q22) WILD-TYPE" 
                  TCGA-IB-7893                   TCGA-IB-7897 
"DEL PEAK 21(17Q22) WILD-TYPE" "DEL PEAK 21(17Q22) WILD-TYPE" 
                  TCGA-IB-8126                   TCGA-IB-8127 
"DEL PEAK 21(17Q22) WILD-TYPE"   "DEL PEAK 21(17Q22) MUTATED" 
                  TCGA-IB-A5SO                   TCGA-IB-A5SP 
"DEL PEAK 21(17Q22) WILD-TYPE"   "DEL PEAK 21(17Q22) MUTATED" 
                  TCGA-IB-A5SQ                   TCGA-IB-A5SS 
"DEL PEAK 21(17Q22) WILD-TYPE" "DEL PEAK 21(17Q22) WILD-TYPE" 
                  TCGA-IB-A5ST                   TCGA-IB-A6UG 
"DEL PEAK 21(17Q22) WILD-TYPE" "DEL PEAK 21(17Q22) WILD-TYPE" 
                  TCGA-LB-A7SX                   TCGA-OE-A75W 
  "DEL PEAK 21(17Q22) MUTATED"   "DEL PEAK 21(17Q22) MUTATED" 
                  TCGA-PZ-A5RE                   TCGA-Q3-A5QY 
"DEL PEAK 21(17Q22) WILD-TYPE" "DEL PEAK 21(17Q22) WILD-TYPE" 
                  TCGA-US-A779                   TCGA-US-A77E 
  "DEL PEAK 21(17Q22) MUTATED" "DEL PEAK 21(17Q22) WILD-TYPE" 
                  TCGA-US-A77J 
"DEL PEAK 21(17Q22) WILD-TYPE" 
[1] "hr=" "1.4"
D36V2, continuous
                              vv
clus                           STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III
  DEL PEAK 21(17Q22) MUTATED          0        0         3        15         0
  DEL PEAK 21(17Q22) WILD-TYPE        2        4         8        35         2
                              vv
clus                           STAGE IV
  DEL PEAK 21(17Q22) MUTATED          2
  DEL PEAK 21(17Q22) WILD-TYPE        1
D36V3, multiclass
                              vv
clus                           T1+T2 T3+T4
  DEL PEAK 21(17Q22) MUTATED       0    20
  DEL PEAK 21(17Q22) WILD-TYPE     7    45
D36V4, multiclass
       clus
vv      DEL PEAK 21(17Q22) MUTATED DEL PEAK 21(17Q22) WILD-TYPE
  T1+T2                          0                            7
  T3+T4                         20                           45
D36V5, binary
                              cls
clus                            0  1
  DEL PEAK 21(17Q22) MUTATED    4 16
  DEL PEAK 21(17Q22) WILD-TYPE 14 37
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 21(17Q22) MUTATED      4   16
  DEL PEAK 21(17Q22) WILD-TYPE   14   37
   clus
vv  DEL PEAK 21(17Q22) MUTATED DEL PEAK 21(17Q22) WILD-TYPE
  0                          4                           14
  1                         16                           37
                              vv
clus                           M0 M1 MX
  DEL PEAK 21(17Q22) MUTATED   12  2  6
  DEL PEAK 21(17Q22) WILD-TYPE 27  1 24
D36V6, multiclass
    clus
vv   DEL PEAK 21(17Q22) MUTATED DEL PEAK 21(17Q22) WILD-TYPE
  M0                         12                           27
  M1                          2                            1
  MX                          6                           24
D36V7, binary
                              cls
clus                            0  1
  DEL PEAK 21(17Q22) MUTATED   10 10
  DEL PEAK 21(17Q22) WILD-TYPE 26 26
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 21(17Q22) MUTATED     10   10
  DEL PEAK 21(17Q22) WILD-TYPE   26   26
        clus
vv       DEL PEAK 21(17Q22) MUTATED DEL PEAK 21(17Q22) WILD-TYPE
  FEMALE                         10                           26
  MALE                           10                           26
                              vv
clus                           PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK 21(17Q22) MUTATED                                    18
  DEL PEAK 21(17Q22) WILD-TYPE                                  46
                              vv
clus                           PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK 21(17Q22) MUTATED                                       1
  DEL PEAK 21(17Q22) WILD-TYPE                                     4
                              vv
clus                           PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK 21(17Q22) MUTATED                                                  0
  DEL PEAK 21(17Q22) WILD-TYPE                                                2
D36V8, multiclass
                                                  clus
vv                                                 DEL PEAK 21(17Q22) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                      18
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                     1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                          0
                                                  clus
vv                                                 DEL PEAK 21(17Q22) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                        46
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                       4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                            2
D36V9, continuous
D36V10, continuous
                              vv
clus                           R0 R1 RX
  DEL PEAK 21(17Q22) MUTATED    6 12  1
  DEL PEAK 21(17Q22) WILD-TYPE 37 12  1
D36V11, multiclass
    clus
vv   DEL PEAK 21(17Q22) MUTATED DEL PEAK 21(17Q22) WILD-TYPE
  R0                          6                           37
  R1                         12                           12
  RX                          1                            1
D36V12, continuous

Clustering(37) Variable = DEL PEAK 22(18P11.32) MUTATION ANALYSIS
D37V1, survival
                                 sevent
clus2                              0  1
  DEL PEAK 22(18P11.32) MUTATED   15  8
  DEL PEAK 22(18P11.32) WILD-TYPE 25 21
  DEL PEAK 22(18P11.32) MUTATED DEL PEAK 22(18P11.32) WILD-TYPE 
                             23                              46 
  DEL PEAK 22(18P11.32) MUTATED DEL PEAK 22(18P11.32) WILD-TYPE 
                              8                              21 
$`DEL PEAK 22(18P11.32) MUTATED`
TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR 
        5.03        19.27        12.66         2.47         0.03         5.46 
TCGA-H6-A45N TCGA-HZ-7918 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8315 TCGA-HZ-A49G 
        7.66         0.92         0.26         0.62         0.92         0.76 
TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7649 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7889 
        6.38         1.51        15.35        27.98         4.04        15.81 
TCGA-IB-7890 TCGA-IB-A5SO TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-OE-A75W 
       19.66        10.82         7.20        15.12         3.62 

$`DEL PEAK 22(18P11.32) WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-FB-A4P5 TCGA-FZ-5920 
       10.98         9.70        11.84         7.10         0.13         2.01 
TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7919 
       36.20        20.81        12.89        13.02         7.89         0.66 
TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-8002 TCGA-HZ-8003 
        0.13         0.26        12.13        11.87         0.79         0.69 
TCGA-HZ-8005 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49H 
        3.95         0.53         0.10         0.16         2.99         0.95 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7651 TCGA-IB-7652 
       11.41        49.38         4.77        21.90        19.82        15.65 
TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 
        3.62        43.79        16.04         3.85        15.98         0.56 
TCGA-IB-8127 TCGA-IB-A5SP TCGA-IB-A5ST TCGA-IB-A6UG TCGA-LB-A7SX TCGA-PZ-A5RE 
       17.16         9.86         0.26         1.35         4.18         8.12 
TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       13.68        16.80        14.14        18.67 

  DEL PEAK 22(18P11.32) MUTATED DEL PEAK 22(18P11.32) WILD-TYPE 
                           0.03                            0.10 
  DEL PEAK 22(18P11.32) MUTATED DEL PEAK 22(18P11.32) WILD-TYPE 
                          27.98                           49.38 
  DEL PEAK 22(18P11.32) MUTATED DEL PEAK 22(18P11.32) WILD-TYPE 
                           5.46                            8.91 
[1] "0.0 - 28.0 (5.5)" "0.1 - 49.4 (8.9)"
                     TCGA-F2-6879                      TCGA-F2-6880 
"DEL PEAK 22(18P11.32) WILD-TYPE" "DEL PEAK 22(18P11.32) WILD-TYPE" 
                     TCGA-F2-7273                      TCGA-F2-7276 
"DEL PEAK 22(18P11.32) WILD-TYPE" "DEL PEAK 22(18P11.32) WILD-TYPE" 
                     TCGA-F2-A44G                      TCGA-F2-A44H 
  "DEL PEAK 22(18P11.32) MUTATED"   "DEL PEAK 22(18P11.32) MUTATED" 
                     TCGA-FB-A4P5                      TCGA-FB-A545 
"DEL PEAK 22(18P11.32) WILD-TYPE"   "DEL PEAK 22(18P11.32) MUTATED" 
                     TCGA-FB-A5VM                      TCGA-FB-A78T 
  "DEL PEAK 22(18P11.32) MUTATED"   "DEL PEAK 22(18P11.32) MUTATED" 
                     TCGA-FB-A7DR                      TCGA-FZ-5920 
  "DEL PEAK 22(18P11.32) MUTATED" "DEL PEAK 22(18P11.32) WILD-TYPE" 
                     TCGA-FZ-5922                      TCGA-FZ-5923 
"DEL PEAK 22(18P11.32) WILD-TYPE" "DEL PEAK 22(18P11.32) WILD-TYPE" 
                     TCGA-H6-8124                      TCGA-H6-A45N 
"DEL PEAK 22(18P11.32) WILD-TYPE"   "DEL PEAK 22(18P11.32) MUTATED" 
                     TCGA-H8-A6C1                      TCGA-HZ-7289 
"DEL PEAK 22(18P11.32) WILD-TYPE" "DEL PEAK 22(18P11.32) WILD-TYPE" 
                     TCGA-HZ-7918                      TCGA-HZ-7919 
  "DEL PEAK 22(18P11.32) MUTATED" "DEL PEAK 22(18P11.32) WILD-TYPE" 
                     TCGA-HZ-7922                      TCGA-HZ-7923 
"DEL PEAK 22(18P11.32) WILD-TYPE" "DEL PEAK 22(18P11.32) WILD-TYPE" 
                     TCGA-HZ-7924                      TCGA-HZ-7925 
"DEL PEAK 22(18P11.32) WILD-TYPE" "DEL PEAK 22(18P11.32) WILD-TYPE" 
                     TCGA-HZ-7926                      TCGA-HZ-8001 
  "DEL PEAK 22(18P11.32) MUTATED"   "DEL PEAK 22(18P11.32) MUTATED" 
                     TCGA-HZ-8002                      TCGA-HZ-8003 
"DEL PEAK 22(18P11.32) WILD-TYPE" "DEL PEAK 22(18P11.32) WILD-TYPE" 
                     TCGA-HZ-8005                      TCGA-HZ-8315 
"DEL PEAK 22(18P11.32) WILD-TYPE"   "DEL PEAK 22(18P11.32) MUTATED" 
                     TCGA-HZ-8317                      TCGA-HZ-8519 
"DEL PEAK 22(18P11.32) WILD-TYPE" "DEL PEAK 22(18P11.32) WILD-TYPE" 
                     TCGA-HZ-8636                      TCGA-HZ-8638 
"DEL PEAK 22(18P11.32) WILD-TYPE" "DEL PEAK 22(18P11.32) WILD-TYPE" 
                     TCGA-HZ-A49G                      TCGA-HZ-A49H 
  "DEL PEAK 22(18P11.32) MUTATED" "DEL PEAK 22(18P11.32) WILD-TYPE" 
                     TCGA-HZ-A4BH                      TCGA-HZ-A4BK 
  "DEL PEAK 22(18P11.32) MUTATED"   "DEL PEAK 22(18P11.32) MUTATED" 
                     TCGA-IB-7644                      TCGA-IB-7645 
"DEL PEAK 22(18P11.32) WILD-TYPE" "DEL PEAK 22(18P11.32) WILD-TYPE" 
                     TCGA-IB-7646                      TCGA-IB-7647 
"DEL PEAK 22(18P11.32) WILD-TYPE" "DEL PEAK 22(18P11.32) WILD-TYPE" 
                     TCGA-IB-7649                      TCGA-IB-7651 
  "DEL PEAK 22(18P11.32) MUTATED" "DEL PEAK 22(18P11.32) WILD-TYPE" 
                     TCGA-IB-7652                      TCGA-IB-7885 
"DEL PEAK 22(18P11.32) WILD-TYPE"   "DEL PEAK 22(18P11.32) MUTATED" 
                     TCGA-IB-7886                      TCGA-IB-7887 
  "DEL PEAK 22(18P11.32) MUTATED" "DEL PEAK 22(18P11.32) WILD-TYPE" 
                     TCGA-IB-7888                      TCGA-IB-7889 
"DEL PEAK 22(18P11.32) WILD-TYPE"   "DEL PEAK 22(18P11.32) MUTATED" 
                     TCGA-IB-7890                      TCGA-IB-7891 
  "DEL PEAK 22(18P11.32) MUTATED" "DEL PEAK 22(18P11.32) WILD-TYPE" 
                     TCGA-IB-7893                      TCGA-IB-7897 
"DEL PEAK 22(18P11.32) WILD-TYPE" "DEL PEAK 22(18P11.32) WILD-TYPE" 
                     TCGA-IB-8126                      TCGA-IB-8127 
"DEL PEAK 22(18P11.32) WILD-TYPE" "DEL PEAK 22(18P11.32) WILD-TYPE" 
                     TCGA-IB-A5SO                      TCGA-IB-A5SP 
  "DEL PEAK 22(18P11.32) MUTATED" "DEL PEAK 22(18P11.32) WILD-TYPE" 
                     TCGA-IB-A5SQ                      TCGA-IB-A5SS 
  "DEL PEAK 22(18P11.32) MUTATED"   "DEL PEAK 22(18P11.32) MUTATED" 
                     TCGA-IB-A5ST                      TCGA-IB-A6UG 
"DEL PEAK 22(18P11.32) WILD-TYPE" "DEL PEAK 22(18P11.32) WILD-TYPE" 
                     TCGA-LB-A7SX                      TCGA-OE-A75W 
"DEL PEAK 22(18P11.32) WILD-TYPE"   "DEL PEAK 22(18P11.32) MUTATED" 
                     TCGA-PZ-A5RE                      TCGA-Q3-A5QY 
"DEL PEAK 22(18P11.32) WILD-TYPE" "DEL PEAK 22(18P11.32) WILD-TYPE" 
                     TCGA-US-A779                      TCGA-US-A77E 
"DEL PEAK 22(18P11.32) WILD-TYPE" "DEL PEAK 22(18P11.32) WILD-TYPE" 
                     TCGA-US-A77J 
"DEL PEAK 22(18P11.32) WILD-TYPE" 
                     TCGA-F2-6879                      TCGA-F2-6880 
"DEL PEAK 22(18P11.32) WILD-TYPE" "DEL PEAK 22(18P11.32) WILD-TYPE" 
                     TCGA-F2-7273                      TCGA-F2-7276 
"DEL PEAK 22(18P11.32) WILD-TYPE" "DEL PEAK 22(18P11.32) WILD-TYPE" 
                     TCGA-F2-A44G                      TCGA-F2-A44H 
  "DEL PEAK 22(18P11.32) MUTATED"   "DEL PEAK 22(18P11.32) MUTATED" 
                     TCGA-FB-A4P5                      TCGA-FB-A545 
"DEL PEAK 22(18P11.32) WILD-TYPE"   "DEL PEAK 22(18P11.32) MUTATED" 
                     TCGA-FB-A5VM                      TCGA-FB-A78T 
  "DEL PEAK 22(18P11.32) MUTATED"   "DEL PEAK 22(18P11.32) MUTATED" 
                     TCGA-FB-A7DR                      TCGA-FZ-5920 
  "DEL PEAK 22(18P11.32) MUTATED" "DEL PEAK 22(18P11.32) WILD-TYPE" 
                     TCGA-FZ-5922                      TCGA-FZ-5923 
"DEL PEAK 22(18P11.32) WILD-TYPE" "DEL PEAK 22(18P11.32) WILD-TYPE" 
                     TCGA-H6-8124                      TCGA-H6-A45N 
"DEL PEAK 22(18P11.32) WILD-TYPE"   "DEL PEAK 22(18P11.32) MUTATED" 
                     TCGA-H8-A6C1                      TCGA-HZ-7289 
"DEL PEAK 22(18P11.32) WILD-TYPE" "DEL PEAK 22(18P11.32) WILD-TYPE" 
                     TCGA-HZ-7918                      TCGA-HZ-7919 
  "DEL PEAK 22(18P11.32) MUTATED" "DEL PEAK 22(18P11.32) WILD-TYPE" 
                     TCGA-HZ-7922                      TCGA-HZ-7923 
"DEL PEAK 22(18P11.32) WILD-TYPE" "DEL PEAK 22(18P11.32) WILD-TYPE" 
                     TCGA-HZ-7924                      TCGA-HZ-7925 
"DEL PEAK 22(18P11.32) WILD-TYPE" "DEL PEAK 22(18P11.32) WILD-TYPE" 
                     TCGA-HZ-7926                      TCGA-HZ-8001 
  "DEL PEAK 22(18P11.32) MUTATED"   "DEL PEAK 22(18P11.32) MUTATED" 
                     TCGA-HZ-8002                      TCGA-HZ-8003 
"DEL PEAK 22(18P11.32) WILD-TYPE" "DEL PEAK 22(18P11.32) WILD-TYPE" 
                     TCGA-HZ-8005                      TCGA-HZ-8315 
"DEL PEAK 22(18P11.32) WILD-TYPE"   "DEL PEAK 22(18P11.32) MUTATED" 
                     TCGA-HZ-8317                      TCGA-HZ-8519 
"DEL PEAK 22(18P11.32) WILD-TYPE" "DEL PEAK 22(18P11.32) WILD-TYPE" 
                     TCGA-HZ-8636                      TCGA-HZ-8638 
"DEL PEAK 22(18P11.32) WILD-TYPE" "DEL PEAK 22(18P11.32) WILD-TYPE" 
                     TCGA-HZ-A49G                      TCGA-HZ-A49H 
  "DEL PEAK 22(18P11.32) MUTATED" "DEL PEAK 22(18P11.32) WILD-TYPE" 
                     TCGA-HZ-A4BH                      TCGA-HZ-A4BK 
  "DEL PEAK 22(18P11.32) MUTATED"   "DEL PEAK 22(18P11.32) MUTATED" 
                     TCGA-IB-7644                      TCGA-IB-7645 
"DEL PEAK 22(18P11.32) WILD-TYPE" "DEL PEAK 22(18P11.32) WILD-TYPE" 
                     TCGA-IB-7646                      TCGA-IB-7647 
"DEL PEAK 22(18P11.32) WILD-TYPE" "DEL PEAK 22(18P11.32) WILD-TYPE" 
                     TCGA-IB-7649                      TCGA-IB-7651 
  "DEL PEAK 22(18P11.32) MUTATED" "DEL PEAK 22(18P11.32) WILD-TYPE" 
                     TCGA-IB-7652                      TCGA-IB-7885 
"DEL PEAK 22(18P11.32) WILD-TYPE"   "DEL PEAK 22(18P11.32) MUTATED" 
                     TCGA-IB-7886                      TCGA-IB-7887 
  "DEL PEAK 22(18P11.32) MUTATED" "DEL PEAK 22(18P11.32) WILD-TYPE" 
                     TCGA-IB-7888                      TCGA-IB-7889 
"DEL PEAK 22(18P11.32) WILD-TYPE"   "DEL PEAK 22(18P11.32) MUTATED" 
                     TCGA-IB-7890                      TCGA-IB-7891 
  "DEL PEAK 22(18P11.32) MUTATED" "DEL PEAK 22(18P11.32) WILD-TYPE" 
                     TCGA-IB-7893                      TCGA-IB-7897 
"DEL PEAK 22(18P11.32) WILD-TYPE" "DEL PEAK 22(18P11.32) WILD-TYPE" 
                     TCGA-IB-8126                      TCGA-IB-8127 
"DEL PEAK 22(18P11.32) WILD-TYPE" "DEL PEAK 22(18P11.32) WILD-TYPE" 
                     TCGA-IB-A5SO                      TCGA-IB-A5SP 
  "DEL PEAK 22(18P11.32) MUTATED" "DEL PEAK 22(18P11.32) WILD-TYPE" 
                     TCGA-IB-A5SQ                      TCGA-IB-A5SS 
  "DEL PEAK 22(18P11.32) MUTATED"   "DEL PEAK 22(18P11.32) MUTATED" 
                     TCGA-IB-A5ST                      TCGA-IB-A6UG 
"DEL PEAK 22(18P11.32) WILD-TYPE" "DEL PEAK 22(18P11.32) WILD-TYPE" 
                     TCGA-LB-A7SX                      TCGA-OE-A75W 
"DEL PEAK 22(18P11.32) WILD-TYPE"   "DEL PEAK 22(18P11.32) MUTATED" 
                     TCGA-PZ-A5RE                      TCGA-Q3-A5QY 
"DEL PEAK 22(18P11.32) WILD-TYPE" "DEL PEAK 22(18P11.32) WILD-TYPE" 
                     TCGA-US-A779                      TCGA-US-A77E 
"DEL PEAK 22(18P11.32) WILD-TYPE" "DEL PEAK 22(18P11.32) WILD-TYPE" 
                     TCGA-US-A77J 
"DEL PEAK 22(18P11.32) WILD-TYPE" 
                     TCGA-F2-6879                      TCGA-F2-6880 
"DEL PEAK 22(18P11.32) WILD-TYPE" "DEL PEAK 22(18P11.32) WILD-TYPE" 
                     TCGA-F2-7273                      TCGA-F2-7276 
"DEL PEAK 22(18P11.32) WILD-TYPE" "DEL PEAK 22(18P11.32) WILD-TYPE" 
                     TCGA-F2-A44G                      TCGA-F2-A44H 
  "DEL PEAK 22(18P11.32) MUTATED"   "DEL PEAK 22(18P11.32) MUTATED" 
                     TCGA-FB-A4P5                      TCGA-FB-A545 
"DEL PEAK 22(18P11.32) WILD-TYPE"   "DEL PEAK 22(18P11.32) MUTATED" 
                     TCGA-FB-A5VM                      TCGA-FB-A78T 
  "DEL PEAK 22(18P11.32) MUTATED"   "DEL PEAK 22(18P11.32) MUTATED" 
                     TCGA-FB-A7DR                      TCGA-FZ-5920 
  "DEL PEAK 22(18P11.32) MUTATED" "DEL PEAK 22(18P11.32) WILD-TYPE" 
                     TCGA-FZ-5922                      TCGA-FZ-5923 
"DEL PEAK 22(18P11.32) WILD-TYPE" "DEL PEAK 22(18P11.32) WILD-TYPE" 
                     TCGA-H6-8124                      TCGA-H6-A45N 
"DEL PEAK 22(18P11.32) WILD-TYPE"   "DEL PEAK 22(18P11.32) MUTATED" 
                     TCGA-H8-A6C1                      TCGA-HZ-7289 
"DEL PEAK 22(18P11.32) WILD-TYPE" "DEL PEAK 22(18P11.32) WILD-TYPE" 
                     TCGA-HZ-7918                      TCGA-HZ-7919 
  "DEL PEAK 22(18P11.32) MUTATED" "DEL PEAK 22(18P11.32) WILD-TYPE" 
                     TCGA-HZ-7922                      TCGA-HZ-7923 
"DEL PEAK 22(18P11.32) WILD-TYPE" "DEL PEAK 22(18P11.32) WILD-TYPE" 
                     TCGA-HZ-7924                      TCGA-HZ-7925 
"DEL PEAK 22(18P11.32) WILD-TYPE" "DEL PEAK 22(18P11.32) WILD-TYPE" 
                     TCGA-HZ-7926                      TCGA-HZ-8001 
  "DEL PEAK 22(18P11.32) MUTATED"   "DEL PEAK 22(18P11.32) MUTATED" 
                     TCGA-HZ-8002                      TCGA-HZ-8003 
"DEL PEAK 22(18P11.32) WILD-TYPE" "DEL PEAK 22(18P11.32) WILD-TYPE" 
                     TCGA-HZ-8005                      TCGA-HZ-8315 
"DEL PEAK 22(18P11.32) WILD-TYPE"   "DEL PEAK 22(18P11.32) MUTATED" 
                     TCGA-HZ-8317                      TCGA-HZ-8519 
"DEL PEAK 22(18P11.32) WILD-TYPE" "DEL PEAK 22(18P11.32) WILD-TYPE" 
                     TCGA-HZ-8636                      TCGA-HZ-8638 
"DEL PEAK 22(18P11.32) WILD-TYPE" "DEL PEAK 22(18P11.32) WILD-TYPE" 
                     TCGA-HZ-A49G                      TCGA-HZ-A49H 
  "DEL PEAK 22(18P11.32) MUTATED" "DEL PEAK 22(18P11.32) WILD-TYPE" 
                     TCGA-HZ-A4BH                      TCGA-HZ-A4BK 
  "DEL PEAK 22(18P11.32) MUTATED"   "DEL PEAK 22(18P11.32) MUTATED" 
                     TCGA-IB-7644                      TCGA-IB-7645 
"DEL PEAK 22(18P11.32) WILD-TYPE" "DEL PEAK 22(18P11.32) WILD-TYPE" 
                     TCGA-IB-7646                      TCGA-IB-7647 
"DEL PEAK 22(18P11.32) WILD-TYPE" "DEL PEAK 22(18P11.32) WILD-TYPE" 
                     TCGA-IB-7649                      TCGA-IB-7651 
  "DEL PEAK 22(18P11.32) MUTATED" "DEL PEAK 22(18P11.32) WILD-TYPE" 
                     TCGA-IB-7652                      TCGA-IB-7885 
"DEL PEAK 22(18P11.32) WILD-TYPE"   "DEL PEAK 22(18P11.32) MUTATED" 
                     TCGA-IB-7886                      TCGA-IB-7887 
  "DEL PEAK 22(18P11.32) MUTATED" "DEL PEAK 22(18P11.32) WILD-TYPE" 
                     TCGA-IB-7888                      TCGA-IB-7889 
"DEL PEAK 22(18P11.32) WILD-TYPE"   "DEL PEAK 22(18P11.32) MUTATED" 
                     TCGA-IB-7890                      TCGA-IB-7891 
  "DEL PEAK 22(18P11.32) MUTATED" "DEL PEAK 22(18P11.32) WILD-TYPE" 
                     TCGA-IB-7893                      TCGA-IB-7897 
"DEL PEAK 22(18P11.32) WILD-TYPE" "DEL PEAK 22(18P11.32) WILD-TYPE" 
                     TCGA-IB-8126                      TCGA-IB-8127 
"DEL PEAK 22(18P11.32) WILD-TYPE" "DEL PEAK 22(18P11.32) WILD-TYPE" 
                     TCGA-IB-A5SO                      TCGA-IB-A5SP 
  "DEL PEAK 22(18P11.32) MUTATED" "DEL PEAK 22(18P11.32) WILD-TYPE" 
                     TCGA-IB-A5SQ                      TCGA-IB-A5SS 
  "DEL PEAK 22(18P11.32) MUTATED"   "DEL PEAK 22(18P11.32) MUTATED" 
                     TCGA-IB-A5ST                      TCGA-IB-A6UG 
"DEL PEAK 22(18P11.32) WILD-TYPE" "DEL PEAK 22(18P11.32) WILD-TYPE" 
                     TCGA-LB-A7SX                      TCGA-OE-A75W 
"DEL PEAK 22(18P11.32) WILD-TYPE"   "DEL PEAK 22(18P11.32) MUTATED" 
                     TCGA-PZ-A5RE                      TCGA-Q3-A5QY 
"DEL PEAK 22(18P11.32) WILD-TYPE" "DEL PEAK 22(18P11.32) WILD-TYPE" 
                     TCGA-US-A779                      TCGA-US-A77E 
"DEL PEAK 22(18P11.32) WILD-TYPE" "DEL PEAK 22(18P11.32) WILD-TYPE" 
                     TCGA-US-A77J 
"DEL PEAK 22(18P11.32) WILD-TYPE" 
[1] "hr=" "1.1"
D37V2, continuous
                                 vv
clus                              STAGE IA STAGE IB STAGE IIA STAGE IIB
  DEL PEAK 22(18P11.32) MUTATED          0        3         4        16
  DEL PEAK 22(18P11.32) WILD-TYPE        2        1         7        34
                                 vv
clus                              STAGE III STAGE IV
  DEL PEAK 22(18P11.32) MUTATED           1        0
  DEL PEAK 22(18P11.32) WILD-TYPE         1        3
D37V3, multiclass
                                 vv
clus                              T1+T2 T3+T4
  DEL PEAK 22(18P11.32) MUTATED       4    20
  DEL PEAK 22(18P11.32) WILD-TYPE     3    45
D37V4, multiclass
       clus
vv      DEL PEAK 22(18P11.32) MUTATED DEL PEAK 22(18P11.32) WILD-TYPE
  T1+T2                             4                               3
  T3+T4                            20                              45
D37V5, binary
                                 cls
clus                               0  1
  DEL PEAK 22(18P11.32) MUTATED    7 16
  DEL PEAK 22(18P11.32) WILD-TYPE 11 37
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 22(18P11.32) MUTATED      7   16
  DEL PEAK 22(18P11.32) WILD-TYPE   11   37
   clus
vv  DEL PEAK 22(18P11.32) MUTATED DEL PEAK 22(18P11.32) WILD-TYPE
  0                             7                              11
  1                            16                              37
                                 vv
clus                              M0 M1 MX
  DEL PEAK 22(18P11.32) MUTATED   16  0  8
  DEL PEAK 22(18P11.32) WILD-TYPE 23  3 22
D37V6, multiclass
    clus
vv   DEL PEAK 22(18P11.32) MUTATED DEL PEAK 22(18P11.32) WILD-TYPE
  M0                            16                              23
  M1                             0                               3
  MX                             8                              22
D37V7, binary
                                 cls
clus                               0  1
  DEL PEAK 22(18P11.32) MUTATED   12 12
  DEL PEAK 22(18P11.32) WILD-TYPE 24 24
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 22(18P11.32) MUTATED     12   12
  DEL PEAK 22(18P11.32) WILD-TYPE   24   24
        clus
vv       DEL PEAK 22(18P11.32) MUTATED DEL PEAK 22(18P11.32) WILD-TYPE
  FEMALE                            12                              24
  MALE                              12                              24
                                 vv
clus                              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK 22(18P11.32) MUTATED                                    21
  DEL PEAK 22(18P11.32) WILD-TYPE                                  43
                                 vv
clus                              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK 22(18P11.32) MUTATED                                       2
  DEL PEAK 22(18P11.32) WILD-TYPE                                     3
                                 vv
clus                              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK 22(18P11.32) MUTATED                                                  1
  DEL PEAK 22(18P11.32) WILD-TYPE                                                1
D37V8, multiclass
                                                  clus
vv                                                 DEL PEAK 22(18P11.32) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                         21
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                        2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                             1
                                                  clus
vv                                                 DEL PEAK 22(18P11.32) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                           43
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                          3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                               1
D37V9, continuous
D37V10, continuous
                                 vv
clus                              R0 R1 RX
  DEL PEAK 22(18P11.32) MUTATED   14  7  1
  DEL PEAK 22(18P11.32) WILD-TYPE 29 17  1
D37V11, multiclass
    clus
vv   DEL PEAK 22(18P11.32) MUTATED DEL PEAK 22(18P11.32) WILD-TYPE
  R0                            14                              29
  R1                             7                              17
  RX                             1                               1
D37V12, continuous

Clustering(38) Variable = DEL PEAK 23(18Q21.2) MUTATION ANALYSIS
D38V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 23(18Q21.2) MUTATED   28 17
  DEL PEAK 23(18Q21.2) WILD-TYPE 12 12
  DEL PEAK 23(18Q21.2) MUTATED DEL PEAK 23(18Q21.2) WILD-TYPE 
                            45                             24 
  DEL PEAK 23(18Q21.2) MUTATED DEL PEAK 23(18Q21.2) WILD-TYPE 
                            17                             12 
$`DEL PEAK 23(18Q21.2) MUTATED`
TCGA-F2-6879 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T 
       10.98         5.03        19.27        12.66         2.47         0.03 
TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        5.46         2.01        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 
        7.89         0.92         0.66        11.87         0.26         0.62 
TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8636 TCGA-HZ-A49G TCGA-HZ-A4BH TCGA-HZ-A4BK 
        3.95         0.92         0.16         0.76         6.38         1.51 
TCGA-IB-7644 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 
       11.41        21.90        15.35        15.65        27.98         4.04 
TCGA-IB-7887 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-8126 
        3.62        15.81        19.66        16.04         3.85         0.56 
TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A6UG 
       17.16        10.82         9.86         7.20        15.12         1.35 
TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE 
        4.18         3.62         8.12 

$`DEL PEAK 23(18Q21.2) WILD-TYPE`
TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-FB-A4P5 TCGA-FZ-5922 TCGA-HZ-7922 
        9.70        11.84         7.10         0.13        36.20         0.13 
TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8317 TCGA-HZ-8519 
        0.26        12.13         0.79         0.69         0.53         0.10 
TCGA-HZ-8638 TCGA-HZ-A49H TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7651 TCGA-IB-7888 
        2.99         0.95        49.38         4.77        19.82        43.79 
TCGA-IB-7897 TCGA-IB-A5ST TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       15.98         0.26        13.68        16.80        14.14        18.67 

  DEL PEAK 23(18Q21.2) MUTATED DEL PEAK 23(18Q21.2) WILD-TYPE 
                          0.03                           0.10 
  DEL PEAK 23(18Q21.2) MUTATED DEL PEAK 23(18Q21.2) WILD-TYPE 
                         27.98                          49.38 
  DEL PEAK 23(18Q21.2) MUTATED DEL PEAK 23(18Q21.2) WILD-TYPE 
                           7.2                            8.4 
[1] "0.0 - 28.0 (7.2)" "0.1 - 49.4 (8.4)"
                    TCGA-F2-6879                     TCGA-F2-6880 
  "DEL PEAK 23(18Q21.2) MUTATED" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
  "DEL PEAK 23(18Q21.2) MUTATED"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"DEL PEAK 23(18Q21.2) WILD-TYPE"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-FB-A5VM                     TCGA-FB-A78T 
  "DEL PEAK 23(18Q21.2) MUTATED"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-FB-A7DR                     TCGA-FZ-5920 
  "DEL PEAK 23(18Q21.2) MUTATED"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-FZ-5922                     TCGA-FZ-5923 
"DEL PEAK 23(18Q21.2) WILD-TYPE"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
  "DEL PEAK 23(18Q21.2) MUTATED"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-H8-A6C1                     TCGA-HZ-7289 
  "DEL PEAK 23(18Q21.2) MUTATED"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-HZ-7918                     TCGA-HZ-7919 
  "DEL PEAK 23(18Q21.2) MUTATED"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-HZ-7922                     TCGA-HZ-7923 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-HZ-7924                     TCGA-HZ-7925 
"DEL PEAK 23(18Q21.2) WILD-TYPE"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-HZ-7926                     TCGA-HZ-8001 
  "DEL PEAK 23(18Q21.2) MUTATED"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-HZ-8002                     TCGA-HZ-8003 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-HZ-8005                     TCGA-HZ-8315 
  "DEL PEAK 23(18Q21.2) MUTATED"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-HZ-8317                     TCGA-HZ-8519 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-HZ-8636                     TCGA-HZ-8638 
  "DEL PEAK 23(18Q21.2) MUTATED" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-HZ-A49G                     TCGA-HZ-A49H 
  "DEL PEAK 23(18Q21.2) MUTATED" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-HZ-A4BH                     TCGA-HZ-A4BK 
  "DEL PEAK 23(18Q21.2) MUTATED"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-IB-7644                     TCGA-IB-7645 
  "DEL PEAK 23(18Q21.2) MUTATED" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-IB-7646                     TCGA-IB-7647 
"DEL PEAK 23(18Q21.2) WILD-TYPE"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-IB-7649                     TCGA-IB-7651 
  "DEL PEAK 23(18Q21.2) MUTATED" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-IB-7652                     TCGA-IB-7885 
  "DEL PEAK 23(18Q21.2) MUTATED"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-IB-7886                     TCGA-IB-7887 
  "DEL PEAK 23(18Q21.2) MUTATED"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-IB-7888                     TCGA-IB-7889 
"DEL PEAK 23(18Q21.2) WILD-TYPE"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-IB-7890                     TCGA-IB-7891 
  "DEL PEAK 23(18Q21.2) MUTATED"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-IB-7893                     TCGA-IB-7897 
  "DEL PEAK 23(18Q21.2) MUTATED" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-IB-8126                     TCGA-IB-8127 
  "DEL PEAK 23(18Q21.2) MUTATED"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-IB-A5SO                     TCGA-IB-A5SP 
  "DEL PEAK 23(18Q21.2) MUTATED"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-IB-A5SQ                     TCGA-IB-A5SS 
  "DEL PEAK 23(18Q21.2) MUTATED"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-IB-A5ST                     TCGA-IB-A6UG 
"DEL PEAK 23(18Q21.2) WILD-TYPE"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-LB-A7SX                     TCGA-OE-A75W 
  "DEL PEAK 23(18Q21.2) MUTATED"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-PZ-A5RE                     TCGA-Q3-A5QY 
  "DEL PEAK 23(18Q21.2) MUTATED" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-US-A779                     TCGA-US-A77E 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-US-A77J 
"DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-F2-6879                     TCGA-F2-6880 
  "DEL PEAK 23(18Q21.2) MUTATED" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
  "DEL PEAK 23(18Q21.2) MUTATED"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"DEL PEAK 23(18Q21.2) WILD-TYPE"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-FB-A5VM                     TCGA-FB-A78T 
  "DEL PEAK 23(18Q21.2) MUTATED"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-FB-A7DR                     TCGA-FZ-5920 
  "DEL PEAK 23(18Q21.2) MUTATED"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-FZ-5922                     TCGA-FZ-5923 
"DEL PEAK 23(18Q21.2) WILD-TYPE"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
  "DEL PEAK 23(18Q21.2) MUTATED"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-H8-A6C1                     TCGA-HZ-7289 
  "DEL PEAK 23(18Q21.2) MUTATED"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-HZ-7918                     TCGA-HZ-7919 
  "DEL PEAK 23(18Q21.2) MUTATED"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-HZ-7922                     TCGA-HZ-7923 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-HZ-7924                     TCGA-HZ-7925 
"DEL PEAK 23(18Q21.2) WILD-TYPE"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-HZ-7926                     TCGA-HZ-8001 
  "DEL PEAK 23(18Q21.2) MUTATED"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-HZ-8002                     TCGA-HZ-8003 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-HZ-8005                     TCGA-HZ-8315 
  "DEL PEAK 23(18Q21.2) MUTATED"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-HZ-8317                     TCGA-HZ-8519 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-HZ-8636                     TCGA-HZ-8638 
  "DEL PEAK 23(18Q21.2) MUTATED" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-HZ-A49G                     TCGA-HZ-A49H 
  "DEL PEAK 23(18Q21.2) MUTATED" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-HZ-A4BH                     TCGA-HZ-A4BK 
  "DEL PEAK 23(18Q21.2) MUTATED"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-IB-7644                     TCGA-IB-7645 
  "DEL PEAK 23(18Q21.2) MUTATED" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-IB-7646                     TCGA-IB-7647 
"DEL PEAK 23(18Q21.2) WILD-TYPE"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-IB-7649                     TCGA-IB-7651 
  "DEL PEAK 23(18Q21.2) MUTATED" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-IB-7652                     TCGA-IB-7885 
  "DEL PEAK 23(18Q21.2) MUTATED"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-IB-7886                     TCGA-IB-7887 
  "DEL PEAK 23(18Q21.2) MUTATED"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-IB-7888                     TCGA-IB-7889 
"DEL PEAK 23(18Q21.2) WILD-TYPE"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-IB-7890                     TCGA-IB-7891 
  "DEL PEAK 23(18Q21.2) MUTATED"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-IB-7893                     TCGA-IB-7897 
  "DEL PEAK 23(18Q21.2) MUTATED" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-IB-8126                     TCGA-IB-8127 
  "DEL PEAK 23(18Q21.2) MUTATED"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-IB-A5SO                     TCGA-IB-A5SP 
  "DEL PEAK 23(18Q21.2) MUTATED"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-IB-A5SQ                     TCGA-IB-A5SS 
  "DEL PEAK 23(18Q21.2) MUTATED"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-IB-A5ST                     TCGA-IB-A6UG 
"DEL PEAK 23(18Q21.2) WILD-TYPE"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-LB-A7SX                     TCGA-OE-A75W 
  "DEL PEAK 23(18Q21.2) MUTATED"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-PZ-A5RE                     TCGA-Q3-A5QY 
  "DEL PEAK 23(18Q21.2) MUTATED" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-US-A779                     TCGA-US-A77E 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-US-A77J 
"DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-F2-6879                     TCGA-F2-6880 
  "DEL PEAK 23(18Q21.2) MUTATED" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
  "DEL PEAK 23(18Q21.2) MUTATED"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"DEL PEAK 23(18Q21.2) WILD-TYPE"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-FB-A5VM                     TCGA-FB-A78T 
  "DEL PEAK 23(18Q21.2) MUTATED"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-FB-A7DR                     TCGA-FZ-5920 
  "DEL PEAK 23(18Q21.2) MUTATED"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-FZ-5922                     TCGA-FZ-5923 
"DEL PEAK 23(18Q21.2) WILD-TYPE"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
  "DEL PEAK 23(18Q21.2) MUTATED"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-H8-A6C1                     TCGA-HZ-7289 
  "DEL PEAK 23(18Q21.2) MUTATED"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-HZ-7918                     TCGA-HZ-7919 
  "DEL PEAK 23(18Q21.2) MUTATED"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-HZ-7922                     TCGA-HZ-7923 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-HZ-7924                     TCGA-HZ-7925 
"DEL PEAK 23(18Q21.2) WILD-TYPE"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-HZ-7926                     TCGA-HZ-8001 
  "DEL PEAK 23(18Q21.2) MUTATED"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-HZ-8002                     TCGA-HZ-8003 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-HZ-8005                     TCGA-HZ-8315 
  "DEL PEAK 23(18Q21.2) MUTATED"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-HZ-8317                     TCGA-HZ-8519 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-HZ-8636                     TCGA-HZ-8638 
  "DEL PEAK 23(18Q21.2) MUTATED" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-HZ-A49G                     TCGA-HZ-A49H 
  "DEL PEAK 23(18Q21.2) MUTATED" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-HZ-A4BH                     TCGA-HZ-A4BK 
  "DEL PEAK 23(18Q21.2) MUTATED"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-IB-7644                     TCGA-IB-7645 
  "DEL PEAK 23(18Q21.2) MUTATED" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-IB-7646                     TCGA-IB-7647 
"DEL PEAK 23(18Q21.2) WILD-TYPE"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-IB-7649                     TCGA-IB-7651 
  "DEL PEAK 23(18Q21.2) MUTATED" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-IB-7652                     TCGA-IB-7885 
  "DEL PEAK 23(18Q21.2) MUTATED"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-IB-7886                     TCGA-IB-7887 
  "DEL PEAK 23(18Q21.2) MUTATED"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-IB-7888                     TCGA-IB-7889 
"DEL PEAK 23(18Q21.2) WILD-TYPE"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-IB-7890                     TCGA-IB-7891 
  "DEL PEAK 23(18Q21.2) MUTATED"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-IB-7893                     TCGA-IB-7897 
  "DEL PEAK 23(18Q21.2) MUTATED" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-IB-8126                     TCGA-IB-8127 
  "DEL PEAK 23(18Q21.2) MUTATED"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-IB-A5SO                     TCGA-IB-A5SP 
  "DEL PEAK 23(18Q21.2) MUTATED"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-IB-A5SQ                     TCGA-IB-A5SS 
  "DEL PEAK 23(18Q21.2) MUTATED"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-IB-A5ST                     TCGA-IB-A6UG 
"DEL PEAK 23(18Q21.2) WILD-TYPE"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-LB-A7SX                     TCGA-OE-A75W 
  "DEL PEAK 23(18Q21.2) MUTATED"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-PZ-A5RE                     TCGA-Q3-A5QY 
  "DEL PEAK 23(18Q21.2) MUTATED" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-US-A779                     TCGA-US-A77E 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-US-A77J 
"DEL PEAK 23(18Q21.2) WILD-TYPE" 
[1] "hr=" "1.3"
D38V2, continuous
                                vv
clus                             STAGE IA STAGE IB STAGE IIA STAGE IIB
  DEL PEAK 23(18Q21.2) MUTATED          0        3         7        32
  DEL PEAK 23(18Q21.2) WILD-TYPE        2        1         4        18
                                vv
clus                             STAGE III STAGE IV
  DEL PEAK 23(18Q21.2) MUTATED           2        3
  DEL PEAK 23(18Q21.2) WILD-TYPE         0        0
D38V3, multiclass
                                vv
clus                             T1+T2 T3+T4
  DEL PEAK 23(18Q21.2) MUTATED       4    43
  DEL PEAK 23(18Q21.2) WILD-TYPE     3    22
D38V4, multiclass
       clus
vv      DEL PEAK 23(18Q21.2) MUTATED DEL PEAK 23(18Q21.2) WILD-TYPE
  T1+T2                            4                              3
  T3+T4                           43                             22
D38V5, binary
                                cls
clus                              0  1
  DEL PEAK 23(18Q21.2) MUTATED   11 35
  DEL PEAK 23(18Q21.2) WILD-TYPE  7 18
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 23(18Q21.2) MUTATED     11   35
  DEL PEAK 23(18Q21.2) WILD-TYPE    7   18
   clus
vv  DEL PEAK 23(18Q21.2) MUTATED DEL PEAK 23(18Q21.2) WILD-TYPE
  0                           11                              7
  1                           35                             18
                                vv
clus                             M0 M1 MX
  DEL PEAK 23(18Q21.2) MUTATED   29  3 15
  DEL PEAK 23(18Q21.2) WILD-TYPE 10  0 15
D38V6, multiclass
    clus
vv   DEL PEAK 23(18Q21.2) MUTATED DEL PEAK 23(18Q21.2) WILD-TYPE
  M0                           29                             10
  M1                            3                              0
  MX                           15                             15
D38V7, binary
                                cls
clus                              0  1
  DEL PEAK 23(18Q21.2) MUTATED   22 25
  DEL PEAK 23(18Q21.2) WILD-TYPE 14 11
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 23(18Q21.2) MUTATED     22   25
  DEL PEAK 23(18Q21.2) WILD-TYPE   14   11
        clus
vv       DEL PEAK 23(18Q21.2) MUTATED DEL PEAK 23(18Q21.2) WILD-TYPE
  FEMALE                           22                             14
  MALE                             25                             11
                                vv
clus                             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK 23(18Q21.2) MUTATED                                    41
  DEL PEAK 23(18Q21.2) WILD-TYPE                                  23
                                vv
clus                             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK 23(18Q21.2) MUTATED                                       4
  DEL PEAK 23(18Q21.2) WILD-TYPE                                     1
                                vv
clus                             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK 23(18Q21.2) MUTATED                                                  1
  DEL PEAK 23(18Q21.2) WILD-TYPE                                                1
D38V8, multiclass
                                                  clus
vv                                                 DEL PEAK 23(18Q21.2) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                        41
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                       4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                            1
                                                  clus
vv                                                 DEL PEAK 23(18Q21.2) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                          23
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                         1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                              1
D38V9, continuous
D38V10, continuous
[1] "Remove cluster labels:"         "DEL PEAK 23(18Q21.2) WILD-TYPE"
clus
  DEL PEAK 23(18Q21.2) MUTATED DEL PEAK 23(18Q21.2) WILD-TYPE 
                            16                              2 
                  TCGA-FB-A5VM                   TCGA-FB-A78T 
"DEL PEAK 23(18Q21.2) MUTATED" "DEL PEAK 23(18Q21.2) MUTATED" 
                  TCGA-FB-A7DR                   TCGA-H6-8124 
"DEL PEAK 23(18Q21.2) MUTATED" "DEL PEAK 23(18Q21.2) MUTATED" 
                  TCGA-H8-A6C1                   TCGA-IB-7644 
"DEL PEAK 23(18Q21.2) MUTATED" "DEL PEAK 23(18Q21.2) MUTATED" 
                  TCGA-IB-7649                   TCGA-IB-7885 
"DEL PEAK 23(18Q21.2) MUTATED" "DEL PEAK 23(18Q21.2) MUTATED" 
                  TCGA-IB-7886                   TCGA-IB-7891 
"DEL PEAK 23(18Q21.2) MUTATED" "DEL PEAK 23(18Q21.2) MUTATED" 
                  TCGA-IB-8126                   TCGA-IB-8127 
"DEL PEAK 23(18Q21.2) MUTATED" "DEL PEAK 23(18Q21.2) MUTATED" 
                  TCGA-IB-A5SS                   TCGA-IB-A6UG 
"DEL PEAK 23(18Q21.2) MUTATED" "DEL PEAK 23(18Q21.2) MUTATED" 
                  TCGA-LB-A7SX                   TCGA-OE-A75W 
"DEL PEAK 23(18Q21.2) MUTATED" "DEL PEAK 23(18Q21.2) MUTATED" 
                                vv
clus                             R0 R1 RX
  DEL PEAK 23(18Q21.2) MUTATED   22 20  2
  DEL PEAK 23(18Q21.2) WILD-TYPE 21  4  0
D38V11, multiclass
    clus
vv   DEL PEAK 23(18Q21.2) MUTATED DEL PEAK 23(18Q21.2) WILD-TYPE
  R0                           22                             21
  R1                           20                              4
  RX                            2                              0
D38V12, continuous

Clustering(39) Variable = DEL PEAK 24(19P13.3) MUTATION ANALYSIS
D39V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 24(19P13.3) MUTATED    6  5
  DEL PEAK 24(19P13.3) WILD-TYPE 34 24
  DEL PEAK 24(19P13.3) MUTATED DEL PEAK 24(19P13.3) WILD-TYPE 
                            11                             58 
  DEL PEAK 24(19P13.3) MUTATED DEL PEAK 24(19P13.3) WILD-TYPE 
                             5                             24 
$`DEL PEAK 24(19P13.3) MUTATED`
TCGA-F2-6879 TCGA-H6-8124 TCGA-HZ-7922 TCGA-HZ-8005 TCGA-HZ-8636 TCGA-HZ-A4BH 
       10.98        12.89         0.13         3.95         0.16         6.38 
TCGA-IB-7646 TCGA-IB-7885 TCGA-IB-A5SS TCGA-IB-A6UG TCGA-LB-A7SX 
        4.77        27.98        15.12         1.35         4.18 

$`DEL PEAK 24(19P13.3) WILD-TYPE`
TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
        9.70        11.84         7.10         5.03        19.27         0.13 
TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-FZ-5922 
       12.66         2.47         0.03         5.46         2.01        36.20 
TCGA-FZ-5923 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 
       20.81         7.66        13.02         7.89         0.92         0.66 
TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 
        0.26        12.13        11.87         0.26         0.62         0.79 
TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8638 TCGA-HZ-A49G 
        0.69         0.92         0.53         0.10         2.99         0.76 
TCGA-HZ-A49H TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7647 TCGA-IB-7649 
        0.95         1.51        11.41        49.38        21.90        15.35 
TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 
       19.82        15.65         4.04         3.62        43.79        15.81 
TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 
       19.66        16.04         3.85        15.98         0.56        17.16 
TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5ST TCGA-OE-A75W TCGA-PZ-A5RE 
       10.82         9.86         7.20         0.26         3.62         8.12 
TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       13.68        16.80        14.14        18.67 

  DEL PEAK 24(19P13.3) MUTATED DEL PEAK 24(19P13.3) WILD-TYPE 
                          0.13                           0.03 
  DEL PEAK 24(19P13.3) MUTATED DEL PEAK 24(19P13.3) WILD-TYPE 
                         27.98                          49.38 
  DEL PEAK 24(19P13.3) MUTATED DEL PEAK 24(19P13.3) WILD-TYPE 
                         4.770                          7.775 
[1] "0.1 - 28.0 (4.8)" "0.0 - 49.4 (7.8)"
                    TCGA-F2-6879                     TCGA-F2-6880 
  "DEL PEAK 24(19P13.3) MUTATED" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-FB-A5VM                     TCGA-FB-A78T 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-FB-A7DR                     TCGA-FZ-5920 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-FZ-5922                     TCGA-FZ-5923 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
  "DEL PEAK 24(19P13.3) MUTATED" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-H8-A6C1                     TCGA-HZ-7289 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-HZ-7918                     TCGA-HZ-7919 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-HZ-7922                     TCGA-HZ-7923 
  "DEL PEAK 24(19P13.3) MUTATED" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-HZ-7924                     TCGA-HZ-7925 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-HZ-7926                     TCGA-HZ-8001 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-HZ-8002                     TCGA-HZ-8003 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-HZ-8005                     TCGA-HZ-8315 
  "DEL PEAK 24(19P13.3) MUTATED" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-HZ-8317                     TCGA-HZ-8519 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-HZ-8636                     TCGA-HZ-8638 
  "DEL PEAK 24(19P13.3) MUTATED" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-HZ-A49G                     TCGA-HZ-A49H 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-HZ-A4BH                     TCGA-HZ-A4BK 
  "DEL PEAK 24(19P13.3) MUTATED" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-IB-7644                     TCGA-IB-7645 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-IB-7646                     TCGA-IB-7647 
  "DEL PEAK 24(19P13.3) MUTATED" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-IB-7649                     TCGA-IB-7651 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-IB-7652                     TCGA-IB-7885 
"DEL PEAK 24(19P13.3) WILD-TYPE"   "DEL PEAK 24(19P13.3) MUTATED" 
                    TCGA-IB-7886                     TCGA-IB-7887 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-IB-7888                     TCGA-IB-7889 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-IB-7890                     TCGA-IB-7891 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-IB-7893                     TCGA-IB-7897 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-IB-8126                     TCGA-IB-8127 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-IB-A5SO                     TCGA-IB-A5SP 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-IB-A5SQ                     TCGA-IB-A5SS 
"DEL PEAK 24(19P13.3) WILD-TYPE"   "DEL PEAK 24(19P13.3) MUTATED" 
                    TCGA-IB-A5ST                     TCGA-IB-A6UG 
"DEL PEAK 24(19P13.3) WILD-TYPE"   "DEL PEAK 24(19P13.3) MUTATED" 
                    TCGA-LB-A7SX                     TCGA-OE-A75W 
  "DEL PEAK 24(19P13.3) MUTATED" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-PZ-A5RE                     TCGA-Q3-A5QY 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-US-A779                     TCGA-US-A77E 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-US-A77J 
"DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-F2-6879                     TCGA-F2-6880 
  "DEL PEAK 24(19P13.3) MUTATED" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-FB-A5VM                     TCGA-FB-A78T 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-FB-A7DR                     TCGA-FZ-5920 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-FZ-5922                     TCGA-FZ-5923 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
  "DEL PEAK 24(19P13.3) MUTATED" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-H8-A6C1                     TCGA-HZ-7289 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-HZ-7918                     TCGA-HZ-7919 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-HZ-7922                     TCGA-HZ-7923 
  "DEL PEAK 24(19P13.3) MUTATED" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-HZ-7924                     TCGA-HZ-7925 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-HZ-7926                     TCGA-HZ-8001 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-HZ-8002                     TCGA-HZ-8003 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-HZ-8005                     TCGA-HZ-8315 
  "DEL PEAK 24(19P13.3) MUTATED" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-HZ-8317                     TCGA-HZ-8519 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-HZ-8636                     TCGA-HZ-8638 
  "DEL PEAK 24(19P13.3) MUTATED" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-HZ-A49G                     TCGA-HZ-A49H 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-HZ-A4BH                     TCGA-HZ-A4BK 
  "DEL PEAK 24(19P13.3) MUTATED" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-IB-7644                     TCGA-IB-7645 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-IB-7646                     TCGA-IB-7647 
  "DEL PEAK 24(19P13.3) MUTATED" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-IB-7649                     TCGA-IB-7651 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-IB-7652                     TCGA-IB-7885 
"DEL PEAK 24(19P13.3) WILD-TYPE"   "DEL PEAK 24(19P13.3) MUTATED" 
                    TCGA-IB-7886                     TCGA-IB-7887 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-IB-7888                     TCGA-IB-7889 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-IB-7890                     TCGA-IB-7891 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-IB-7893                     TCGA-IB-7897 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-IB-8126                     TCGA-IB-8127 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-IB-A5SO                     TCGA-IB-A5SP 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-IB-A5SQ                     TCGA-IB-A5SS 
"DEL PEAK 24(19P13.3) WILD-TYPE"   "DEL PEAK 24(19P13.3) MUTATED" 
                    TCGA-IB-A5ST                     TCGA-IB-A6UG 
"DEL PEAK 24(19P13.3) WILD-TYPE"   "DEL PEAK 24(19P13.3) MUTATED" 
                    TCGA-LB-A7SX                     TCGA-OE-A75W 
  "DEL PEAK 24(19P13.3) MUTATED" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-PZ-A5RE                     TCGA-Q3-A5QY 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-US-A779                     TCGA-US-A77E 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-US-A77J 
"DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-F2-6879                     TCGA-F2-6880 
  "DEL PEAK 24(19P13.3) MUTATED" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-FB-A5VM                     TCGA-FB-A78T 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-FB-A7DR                     TCGA-FZ-5920 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-FZ-5922                     TCGA-FZ-5923 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
  "DEL PEAK 24(19P13.3) MUTATED" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-H8-A6C1                     TCGA-HZ-7289 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-HZ-7918                     TCGA-HZ-7919 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-HZ-7922                     TCGA-HZ-7923 
  "DEL PEAK 24(19P13.3) MUTATED" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-HZ-7924                     TCGA-HZ-7925 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-HZ-7926                     TCGA-HZ-8001 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-HZ-8002                     TCGA-HZ-8003 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-HZ-8005                     TCGA-HZ-8315 
  "DEL PEAK 24(19P13.3) MUTATED" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-HZ-8317                     TCGA-HZ-8519 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-HZ-8636                     TCGA-HZ-8638 
  "DEL PEAK 24(19P13.3) MUTATED" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-HZ-A49G                     TCGA-HZ-A49H 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-HZ-A4BH                     TCGA-HZ-A4BK 
  "DEL PEAK 24(19P13.3) MUTATED" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-IB-7644                     TCGA-IB-7645 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-IB-7646                     TCGA-IB-7647 
  "DEL PEAK 24(19P13.3) MUTATED" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-IB-7649                     TCGA-IB-7651 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-IB-7652                     TCGA-IB-7885 
"DEL PEAK 24(19P13.3) WILD-TYPE"   "DEL PEAK 24(19P13.3) MUTATED" 
                    TCGA-IB-7886                     TCGA-IB-7887 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-IB-7888                     TCGA-IB-7889 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-IB-7890                     TCGA-IB-7891 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-IB-7893                     TCGA-IB-7897 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-IB-8126                     TCGA-IB-8127 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-IB-A5SO                     TCGA-IB-A5SP 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-IB-A5SQ                     TCGA-IB-A5SS 
"DEL PEAK 24(19P13.3) WILD-TYPE"   "DEL PEAK 24(19P13.3) MUTATED" 
                    TCGA-IB-A5ST                     TCGA-IB-A6UG 
"DEL PEAK 24(19P13.3) WILD-TYPE"   "DEL PEAK 24(19P13.3) MUTATED" 
                    TCGA-LB-A7SX                     TCGA-OE-A75W 
  "DEL PEAK 24(19P13.3) MUTATED" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-PZ-A5RE                     TCGA-Q3-A5QY 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-US-A779                     TCGA-US-A77E 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-US-A77J 
"DEL PEAK 24(19P13.3) WILD-TYPE" 
[1] "hr=" "1.6"
D39V2, continuous
                                vv
clus                             STAGE IA STAGE IB STAGE IIA STAGE IIB
  DEL PEAK 24(19P13.3) MUTATED          0        0         0        10
  DEL PEAK 24(19P13.3) WILD-TYPE        2        4        11        40
                                vv
clus                             STAGE III STAGE IV
  DEL PEAK 24(19P13.3) MUTATED           0        1
  DEL PEAK 24(19P13.3) WILD-TYPE         2        2
D39V3, multiclass
                                vv
clus                             T1+T2 T3+T4
  DEL PEAK 24(19P13.3) MUTATED       0    11
  DEL PEAK 24(19P13.3) WILD-TYPE     7    54
D39V4, multiclass
       clus
vv      DEL PEAK 24(19P13.3) MUTATED DEL PEAK 24(19P13.3) WILD-TYPE
  T1+T2                            0                              7
  T3+T4                           11                             54
D39V5, binary
                                cls
clus                              0  1
  DEL PEAK 24(19P13.3) MUTATED    1 10
  DEL PEAK 24(19P13.3) WILD-TYPE 17 43
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 24(19P13.3) MUTATED      1   10
  DEL PEAK 24(19P13.3) WILD-TYPE   17   43
   clus
vv  DEL PEAK 24(19P13.3) MUTATED DEL PEAK 24(19P13.3) WILD-TYPE
  0                            1                             17
  1                           10                             43
                                vv
clus                             M0 M1 MX
  DEL PEAK 24(19P13.3) MUTATED    6  1  4
  DEL PEAK 24(19P13.3) WILD-TYPE 33  2 26
D39V6, multiclass
    clus
vv   DEL PEAK 24(19P13.3) MUTATED DEL PEAK 24(19P13.3) WILD-TYPE
  M0                            6                             33
  M1                            1                              2
  MX                            4                             26
D39V7, binary
                                cls
clus                              0  1
  DEL PEAK 24(19P13.3) MUTATED    6  5
  DEL PEAK 24(19P13.3) WILD-TYPE 30 31
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 24(19P13.3) MUTATED      6    5
  DEL PEAK 24(19P13.3) WILD-TYPE   30   31
        clus
vv       DEL PEAK 24(19P13.3) MUTATED DEL PEAK 24(19P13.3) WILD-TYPE
  FEMALE                            6                             30
  MALE                              5                             31
                                vv
clus                             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK 24(19P13.3) MUTATED                                    10
  DEL PEAK 24(19P13.3) WILD-TYPE                                  54
                                vv
clus                             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK 24(19P13.3) MUTATED                                       0
  DEL PEAK 24(19P13.3) WILD-TYPE                                     5
                                vv
clus                             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK 24(19P13.3) MUTATED                                                  0
  DEL PEAK 24(19P13.3) WILD-TYPE                                                2
D39V8, multiclass
                                                  clus
vv                                                 DEL PEAK 24(19P13.3) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                        10
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                       0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                            0
                                                  clus
vv                                                 DEL PEAK 24(19P13.3) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                          54
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                         5
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                              2
D39V9, continuous
D39V10, continuous
                                vv
clus                             R0 R1 RX
  DEL PEAK 24(19P13.3) MUTATED    5  6  0
  DEL PEAK 24(19P13.3) WILD-TYPE 38 18  2
D39V11, multiclass
    clus
vv   DEL PEAK 24(19P13.3) MUTATED DEL PEAK 24(19P13.3) WILD-TYPE
  R0                            5                             38
  R1                            6                             18
  RX                            0                              2
D39V12, continuous

Clustering(40) Variable = DEL PEAK 25(19Q13.41) MUTATION ANALYSIS
D40V1, survival
                                 sevent
clus2                              0  1
  DEL PEAK 25(19Q13.41) MUTATED    4  4
  DEL PEAK 25(19Q13.41) WILD-TYPE 36 25
  DEL PEAK 25(19Q13.41) MUTATED DEL PEAK 25(19Q13.41) WILD-TYPE 
                              8                              61 
  DEL PEAK 25(19Q13.41) MUTATED DEL PEAK 25(19Q13.41) WILD-TYPE 
                              4                              25 
$`DEL PEAK 25(19Q13.41) MUTATED`
TCGA-FB-A7DR TCGA-FZ-5920 TCGA-HZ-8005 TCGA-HZ-A4BH TCGA-IB-7646 TCGA-IB-7652 
        5.46         2.01         3.95         6.38         4.77        15.65 
TCGA-IB-7885 TCGA-IB-A5SS 
       27.98        15.12 

$`DEL PEAK 25(19Q13.41) WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A545 TCGA-FB-A5VM TCGA-FB-A78T TCGA-FZ-5922 TCGA-FZ-5923 
        0.13        12.66         2.47         0.03        36.20        20.81 
TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 
       12.89         7.66        13.02         7.89         0.92         0.66 
TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 
        0.13         0.26        12.13        11.87         0.26         0.62 
TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 
        0.79         0.69         0.92         0.53         0.10         0.16 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 
        2.99         0.76         0.95         1.51        11.41        49.38 
TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 
       21.90        15.35        19.82         4.04         3.62        43.79 
TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 
       15.81        19.66        16.04         3.85        15.98         0.56 
TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5ST TCGA-IB-A6UG 
       17.16        10.82         9.86         7.20         0.26         1.35 
TCGA-LB-A7SX TCGA-OE-A75W TCGA-PZ-A5RE TCGA-Q3-A5QY TCGA-US-A779 TCGA-US-A77E 
        4.18         3.62         8.12        13.68        16.80        14.14 
TCGA-US-A77J 
       18.67 

  DEL PEAK 25(19Q13.41) MUTATED DEL PEAK 25(19Q13.41) WILD-TYPE 
                           2.01                            0.03 
  DEL PEAK 25(19Q13.41) MUTATED DEL PEAK 25(19Q13.41) WILD-TYPE 
                          27.98                           49.38 
  DEL PEAK 25(19Q13.41) MUTATED DEL PEAK 25(19Q13.41) WILD-TYPE 
                           5.92                            7.66 
[1] "2.0 - 28.0 (5.9)" "0.0 - 49.4 (7.7)"
                     TCGA-F2-6879                      TCGA-F2-6880 
"DEL PEAK 25(19Q13.41) WILD-TYPE" "DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-F2-7273                      TCGA-F2-7276 
"DEL PEAK 25(19Q13.41) WILD-TYPE" "DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-F2-A44G                      TCGA-F2-A44H 
"DEL PEAK 25(19Q13.41) WILD-TYPE" "DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-FB-A4P5                      TCGA-FB-A545 
"DEL PEAK 25(19Q13.41) WILD-TYPE" "DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-FB-A5VM                      TCGA-FB-A78T 
"DEL PEAK 25(19Q13.41) WILD-TYPE" "DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-FB-A7DR                      TCGA-FZ-5920 
  "DEL PEAK 25(19Q13.41) MUTATED"   "DEL PEAK 25(19Q13.41) MUTATED" 
                     TCGA-FZ-5922                      TCGA-FZ-5923 
"DEL PEAK 25(19Q13.41) WILD-TYPE" "DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-H6-8124                      TCGA-H6-A45N 
"DEL PEAK 25(19Q13.41) WILD-TYPE" "DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-H8-A6C1                      TCGA-HZ-7289 
"DEL PEAK 25(19Q13.41) WILD-TYPE" "DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-HZ-7918                      TCGA-HZ-7919 
"DEL PEAK 25(19Q13.41) WILD-TYPE" "DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-HZ-7922                      TCGA-HZ-7923 
"DEL PEAK 25(19Q13.41) WILD-TYPE" "DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-HZ-7924                      TCGA-HZ-7925 
"DEL PEAK 25(19Q13.41) WILD-TYPE" "DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-HZ-7926                      TCGA-HZ-8001 
"DEL PEAK 25(19Q13.41) WILD-TYPE" "DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-HZ-8002                      TCGA-HZ-8003 
"DEL PEAK 25(19Q13.41) WILD-TYPE" "DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-HZ-8005                      TCGA-HZ-8315 
  "DEL PEAK 25(19Q13.41) MUTATED" "DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-HZ-8317                      TCGA-HZ-8519 
"DEL PEAK 25(19Q13.41) WILD-TYPE" "DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-HZ-8636                      TCGA-HZ-8638 
"DEL PEAK 25(19Q13.41) WILD-TYPE" "DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-HZ-A49G                      TCGA-HZ-A49H 
"DEL PEAK 25(19Q13.41) WILD-TYPE" "DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-HZ-A4BH                      TCGA-HZ-A4BK 
  "DEL PEAK 25(19Q13.41) MUTATED" "DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-IB-7644                      TCGA-IB-7645 
"DEL PEAK 25(19Q13.41) WILD-TYPE" "DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-IB-7646                      TCGA-IB-7647 
  "DEL PEAK 25(19Q13.41) MUTATED" "DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-IB-7649                      TCGA-IB-7651 
"DEL PEAK 25(19Q13.41) WILD-TYPE" "DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-IB-7652                      TCGA-IB-7885 
  "DEL PEAK 25(19Q13.41) MUTATED"   "DEL PEAK 25(19Q13.41) MUTATED" 
                     TCGA-IB-7886                      TCGA-IB-7887 
"DEL PEAK 25(19Q13.41) WILD-TYPE" "DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-IB-7888                      TCGA-IB-7889 
"DEL PEAK 25(19Q13.41) WILD-TYPE" "DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-IB-7890                      TCGA-IB-7891 
"DEL PEAK 25(19Q13.41) WILD-TYPE" "DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-IB-7893                      TCGA-IB-7897 
"DEL PEAK 25(19Q13.41) WILD-TYPE" "DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-IB-8126                      TCGA-IB-8127 
"DEL PEAK 25(19Q13.41) WILD-TYPE" "DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-IB-A5SO                      TCGA-IB-A5SP 
"DEL PEAK 25(19Q13.41) WILD-TYPE" "DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-IB-A5SQ                      TCGA-IB-A5SS 
"DEL PEAK 25(19Q13.41) WILD-TYPE"   "DEL PEAK 25(19Q13.41) MUTATED" 
                     TCGA-IB-A5ST                      TCGA-IB-A6UG 
"DEL PEAK 25(19Q13.41) WILD-TYPE" "DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-LB-A7SX                      TCGA-OE-A75W 
"DEL PEAK 25(19Q13.41) WILD-TYPE" "DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-PZ-A5RE                      TCGA-Q3-A5QY 
"DEL PEAK 25(19Q13.41) WILD-TYPE" "DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-US-A779                      TCGA-US-A77E 
"DEL PEAK 25(19Q13.41) WILD-TYPE" "DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-US-A77J 
"DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-F2-6879                      TCGA-F2-6880 
"DEL PEAK 25(19Q13.41) WILD-TYPE" "DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-F2-7273                      TCGA-F2-7276 
"DEL PEAK 25(19Q13.41) WILD-TYPE" "DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-F2-A44G                      TCGA-F2-A44H 
"DEL PEAK 25(19Q13.41) WILD-TYPE" "DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-FB-A4P5                      TCGA-FB-A545 
"DEL PEAK 25(19Q13.41) WILD-TYPE" "DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-FB-A5VM                      TCGA-FB-A78T 
"DEL PEAK 25(19Q13.41) WILD-TYPE" "DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-FB-A7DR                      TCGA-FZ-5920 
  "DEL PEAK 25(19Q13.41) MUTATED"   "DEL PEAK 25(19Q13.41) MUTATED" 
                     TCGA-FZ-5922                      TCGA-FZ-5923 
"DEL PEAK 25(19Q13.41) WILD-TYPE" "DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-H6-8124                      TCGA-H6-A45N 
"DEL PEAK 25(19Q13.41) WILD-TYPE" "DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-H8-A6C1                      TCGA-HZ-7289 
"DEL PEAK 25(19Q13.41) WILD-TYPE" "DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-HZ-7918                      TCGA-HZ-7919 
"DEL PEAK 25(19Q13.41) WILD-TYPE" "DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-HZ-7922                      TCGA-HZ-7923 
"DEL PEAK 25(19Q13.41) WILD-TYPE" "DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-HZ-7924                      TCGA-HZ-7925 
"DEL PEAK 25(19Q13.41) WILD-TYPE" "DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-HZ-7926                      TCGA-HZ-8001 
"DEL PEAK 25(19Q13.41) WILD-TYPE" "DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-HZ-8002                      TCGA-HZ-8003 
"DEL PEAK 25(19Q13.41) WILD-TYPE" "DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-HZ-8005                      TCGA-HZ-8315 
  "DEL PEAK 25(19Q13.41) MUTATED" "DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-HZ-8317                      TCGA-HZ-8519 
"DEL PEAK 25(19Q13.41) WILD-TYPE" "DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-HZ-8636                      TCGA-HZ-8638 
"DEL PEAK 25(19Q13.41) WILD-TYPE" "DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-HZ-A49G                      TCGA-HZ-A49H 
"DEL PEAK 25(19Q13.41) WILD-TYPE" "DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-HZ-A4BH                      TCGA-HZ-A4BK 
  "DEL PEAK 25(19Q13.41) MUTATED" "DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-IB-7644                      TCGA-IB-7645 
"DEL PEAK 25(19Q13.41) WILD-TYPE" "DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-IB-7646                      TCGA-IB-7647 
  "DEL PEAK 25(19Q13.41) MUTATED" "DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-IB-7649                      TCGA-IB-7651 
"DEL PEAK 25(19Q13.41) WILD-TYPE" "DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-IB-7652                      TCGA-IB-7885 
  "DEL PEAK 25(19Q13.41) MUTATED"   "DEL PEAK 25(19Q13.41) MUTATED" 
                     TCGA-IB-7886                      TCGA-IB-7887 
"DEL PEAK 25(19Q13.41) WILD-TYPE" "DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-IB-7888                      TCGA-IB-7889 
"DEL PEAK 25(19Q13.41) WILD-TYPE" "DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-IB-7890                      TCGA-IB-7891 
"DEL PEAK 25(19Q13.41) WILD-TYPE" "DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-IB-7893                      TCGA-IB-7897 
"DEL PEAK 25(19Q13.41) WILD-TYPE" "DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-IB-8126                      TCGA-IB-8127 
"DEL PEAK 25(19Q13.41) WILD-TYPE" "DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-IB-A5SO                      TCGA-IB-A5SP 
"DEL PEAK 25(19Q13.41) WILD-TYPE" "DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-IB-A5SQ                      TCGA-IB-A5SS 
"DEL PEAK 25(19Q13.41) WILD-TYPE"   "DEL PEAK 25(19Q13.41) MUTATED" 
                     TCGA-IB-A5ST                      TCGA-IB-A6UG 
"DEL PEAK 25(19Q13.41) WILD-TYPE" "DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-LB-A7SX                      TCGA-OE-A75W 
"DEL PEAK 25(19Q13.41) WILD-TYPE" "DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-PZ-A5RE                      TCGA-Q3-A5QY 
"DEL PEAK 25(19Q13.41) WILD-TYPE" "DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-US-A779                      TCGA-US-A77E 
"DEL PEAK 25(19Q13.41) WILD-TYPE" "DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-US-A77J 
"DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-F2-6879                      TCGA-F2-6880 
"DEL PEAK 25(19Q13.41) WILD-TYPE" "DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-F2-7273                      TCGA-F2-7276 
"DEL PEAK 25(19Q13.41) WILD-TYPE" "DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-F2-A44G                      TCGA-F2-A44H 
"DEL PEAK 25(19Q13.41) WILD-TYPE" "DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-FB-A4P5                      TCGA-FB-A545 
"DEL PEAK 25(19Q13.41) WILD-TYPE" "DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-FB-A5VM                      TCGA-FB-A78T 
"DEL PEAK 25(19Q13.41) WILD-TYPE" "DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-FB-A7DR                      TCGA-FZ-5920 
  "DEL PEAK 25(19Q13.41) MUTATED"   "DEL PEAK 25(19Q13.41) MUTATED" 
                     TCGA-FZ-5922                      TCGA-FZ-5923 
"DEL PEAK 25(19Q13.41) WILD-TYPE" "DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-H6-8124                      TCGA-H6-A45N 
"DEL PEAK 25(19Q13.41) WILD-TYPE" "DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-H8-A6C1                      TCGA-HZ-7289 
"DEL PEAK 25(19Q13.41) WILD-TYPE" "DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-HZ-7918                      TCGA-HZ-7919 
"DEL PEAK 25(19Q13.41) WILD-TYPE" "DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-HZ-7922                      TCGA-HZ-7923 
"DEL PEAK 25(19Q13.41) WILD-TYPE" "DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-HZ-7924                      TCGA-HZ-7925 
"DEL PEAK 25(19Q13.41) WILD-TYPE" "DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-HZ-7926                      TCGA-HZ-8001 
"DEL PEAK 25(19Q13.41) WILD-TYPE" "DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-HZ-8002                      TCGA-HZ-8003 
"DEL PEAK 25(19Q13.41) WILD-TYPE" "DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-HZ-8005                      TCGA-HZ-8315 
  "DEL PEAK 25(19Q13.41) MUTATED" "DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-HZ-8317                      TCGA-HZ-8519 
"DEL PEAK 25(19Q13.41) WILD-TYPE" "DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-HZ-8636                      TCGA-HZ-8638 
"DEL PEAK 25(19Q13.41) WILD-TYPE" "DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-HZ-A49G                      TCGA-HZ-A49H 
"DEL PEAK 25(19Q13.41) WILD-TYPE" "DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-HZ-A4BH                      TCGA-HZ-A4BK 
  "DEL PEAK 25(19Q13.41) MUTATED" "DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-IB-7644                      TCGA-IB-7645 
"DEL PEAK 25(19Q13.41) WILD-TYPE" "DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-IB-7646                      TCGA-IB-7647 
  "DEL PEAK 25(19Q13.41) MUTATED" "DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-IB-7649                      TCGA-IB-7651 
"DEL PEAK 25(19Q13.41) WILD-TYPE" "DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-IB-7652                      TCGA-IB-7885 
  "DEL PEAK 25(19Q13.41) MUTATED"   "DEL PEAK 25(19Q13.41) MUTATED" 
                     TCGA-IB-7886                      TCGA-IB-7887 
"DEL PEAK 25(19Q13.41) WILD-TYPE" "DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-IB-7888                      TCGA-IB-7889 
"DEL PEAK 25(19Q13.41) WILD-TYPE" "DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-IB-7890                      TCGA-IB-7891 
"DEL PEAK 25(19Q13.41) WILD-TYPE" "DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-IB-7893                      TCGA-IB-7897 
"DEL PEAK 25(19Q13.41) WILD-TYPE" "DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-IB-8126                      TCGA-IB-8127 
"DEL PEAK 25(19Q13.41) WILD-TYPE" "DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-IB-A5SO                      TCGA-IB-A5SP 
"DEL PEAK 25(19Q13.41) WILD-TYPE" "DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-IB-A5SQ                      TCGA-IB-A5SS 
"DEL PEAK 25(19Q13.41) WILD-TYPE"   "DEL PEAK 25(19Q13.41) MUTATED" 
                     TCGA-IB-A5ST                      TCGA-IB-A6UG 
"DEL PEAK 25(19Q13.41) WILD-TYPE" "DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-LB-A7SX                      TCGA-OE-A75W 
"DEL PEAK 25(19Q13.41) WILD-TYPE" "DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-PZ-A5RE                      TCGA-Q3-A5QY 
"DEL PEAK 25(19Q13.41) WILD-TYPE" "DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-US-A779                      TCGA-US-A77E 
"DEL PEAK 25(19Q13.41) WILD-TYPE" "DEL PEAK 25(19Q13.41) WILD-TYPE" 
                     TCGA-US-A77J 
"DEL PEAK 25(19Q13.41) WILD-TYPE" 
[1] "hr=" "1.2"
D40V2, continuous
                                 vv
clus                              STAGE IA STAGE IB STAGE IIA STAGE IIB
  DEL PEAK 25(19Q13.41) MUTATED          0        0         1         8
  DEL PEAK 25(19Q13.41) WILD-TYPE        2        4        10        42
                                 vv
clus                              STAGE III STAGE IV
  DEL PEAK 25(19Q13.41) MUTATED           0        0
  DEL PEAK 25(19Q13.41) WILD-TYPE         2        3
D40V3, multiclass
                                 vv
clus                              T1+T2 T3+T4
  DEL PEAK 25(19Q13.41) MUTATED       0     9
  DEL PEAK 25(19Q13.41) WILD-TYPE     7    56
D40V4, multiclass
       clus
vv      DEL PEAK 25(19Q13.41) MUTATED DEL PEAK 25(19Q13.41) WILD-TYPE
  T1+T2                             0                               7
  T3+T4                             9                              56
D40V5, binary
                                 cls
clus                               0  1
  DEL PEAK 25(19Q13.41) MUTATED    0  8
  DEL PEAK 25(19Q13.41) WILD-TYPE 18 45
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 25(19Q13.41) MUTATED      0    8
  DEL PEAK 25(19Q13.41) WILD-TYPE   18   45
   clus
vv  DEL PEAK 25(19Q13.41) MUTATED DEL PEAK 25(19Q13.41) WILD-TYPE
  0                             0                              18
  1                             8                              45
                                 vv
clus                              M0 M1 MX
  DEL PEAK 25(19Q13.41) MUTATED    6  0  3
  DEL PEAK 25(19Q13.41) WILD-TYPE 33  3 27
D40V6, multiclass
    clus
vv   DEL PEAK 25(19Q13.41) MUTATED DEL PEAK 25(19Q13.41) WILD-TYPE
  M0                             6                              33
  M1                             0                               3
  MX                             3                              27
D40V7, binary
                                 cls
clus                               0  1
  DEL PEAK 25(19Q13.41) MUTATED    3  6
  DEL PEAK 25(19Q13.41) WILD-TYPE 33 30
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 25(19Q13.41) MUTATED      3    6
  DEL PEAK 25(19Q13.41) WILD-TYPE   33   30
        clus
vv       DEL PEAK 25(19Q13.41) MUTATED DEL PEAK 25(19Q13.41) WILD-TYPE
  FEMALE                             3                              33
  MALE                               6                              30
                                 vv
clus                              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK 25(19Q13.41) MUTATED                                     8
  DEL PEAK 25(19Q13.41) WILD-TYPE                                  56
                                 vv
clus                              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK 25(19Q13.41) MUTATED                                       0
  DEL PEAK 25(19Q13.41) WILD-TYPE                                     5
                                 vv
clus                              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK 25(19Q13.41) MUTATED                                                  1
  DEL PEAK 25(19Q13.41) WILD-TYPE                                                1
D40V8, multiclass
                                                  clus
vv                                                 DEL PEAK 25(19Q13.41) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                          8
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                             1
                                                  clus
vv                                                 DEL PEAK 25(19Q13.41) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                           56
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                          5
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                               1
D40V9, continuous
D40V10, continuous
                                 vv
clus                              R0 R1 RX
  DEL PEAK 25(19Q13.41) MUTATED    4  5  0
  DEL PEAK 25(19Q13.41) WILD-TYPE 39 19  2
D40V11, multiclass
    clus
vv   DEL PEAK 25(19Q13.41) MUTATED DEL PEAK 25(19Q13.41) WILD-TYPE
  R0                             4                              39
  R1                             5                              19
  RX                             0                               2
D40V12, continuous

Clustering(41) Variable = DEL PEAK 26(21Q21.1) MUTATION ANALYSIS
D41V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 26(21Q21.1) MUTATED   14 10
  DEL PEAK 26(21Q21.1) WILD-TYPE 26 19
  DEL PEAK 26(21Q21.1) MUTATED DEL PEAK 26(21Q21.1) WILD-TYPE 
                            24                             45 
  DEL PEAK 26(21Q21.1) MUTATED DEL PEAK 26(21Q21.1) WILD-TYPE 
                            10                             19 
$`DEL PEAK 26(21Q21.1) MUTATED`
TCGA-FB-A545 TCGA-FB-A78T TCGA-FZ-5920 TCGA-H6-8124 TCGA-H8-A6C1 TCGA-HZ-7918 
       12.66         0.03         2.01        12.89        13.02         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-8005 TCGA-HZ-8636 TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.66         0.13         3.95         0.16         6.38         1.51 
TCGA-IB-7644 TCGA-IB-7646 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7885 TCGA-IB-7886 
       11.41         4.77        15.35        19.82        27.98         4.04 
TCGA-IB-7887 TCGA-IB-A5SP TCGA-IB-A5SS TCGA-IB-A6UG TCGA-LB-A7SX TCGA-OE-A75W 
        3.62         9.86        15.12         1.35         4.18         3.62 

$`DEL PEAK 26(21Q21.1) WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.70        11.84         7.10         5.03        19.27 
TCGA-FB-A4P5 TCGA-FB-A5VM TCGA-FB-A7DR TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-A45N 
        0.13         2.47         5.46        36.20        20.81         7.66 
TCGA-HZ-7289 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 
        7.89         0.26        12.13        11.87         0.26         0.62 
TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8638 
        0.79         0.69         0.92         0.53         0.10         2.99 
TCGA-HZ-A49G TCGA-HZ-A49H TCGA-IB-7645 TCGA-IB-7647 TCGA-IB-7652 TCGA-IB-7888 
        0.76         0.95        49.38        21.90        15.65        43.79 
TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 
       15.81        19.66        16.04         3.85        15.98         0.56 
TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SQ TCGA-IB-A5ST TCGA-PZ-A5RE TCGA-Q3-A5QY 
       17.16        10.82         7.20         0.26         8.12        13.68 
TCGA-US-A779 TCGA-US-A77E TCGA-US-A77J 
       16.80        14.14        18.67 

  DEL PEAK 26(21Q21.1) MUTATED DEL PEAK 26(21Q21.1) WILD-TYPE 
                          0.03                           0.10 
  DEL PEAK 26(21Q21.1) MUTATED DEL PEAK 26(21Q21.1) WILD-TYPE 
                         27.98                          49.38 
  DEL PEAK 26(21Q21.1) MUTATED DEL PEAK 26(21Q21.1) WILD-TYPE 
                          4.11                           8.12 
[1] "0.0 - 28.0 (4.1)" "0.1 - 49.4 (8.1)"
                    TCGA-F2-6879                     TCGA-F2-6880 
"DEL PEAK 26(21Q21.1) WILD-TYPE" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"DEL PEAK 26(21Q21.1) WILD-TYPE" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"DEL PEAK 26(21Q21.1) WILD-TYPE" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"DEL PEAK 26(21Q21.1) WILD-TYPE"   "DEL PEAK 26(21Q21.1) MUTATED" 
                    TCGA-FB-A5VM                     TCGA-FB-A78T 
"DEL PEAK 26(21Q21.1) WILD-TYPE"   "DEL PEAK 26(21Q21.1) MUTATED" 
                    TCGA-FB-A7DR                     TCGA-FZ-5920 
"DEL PEAK 26(21Q21.1) WILD-TYPE"   "DEL PEAK 26(21Q21.1) MUTATED" 
                    TCGA-FZ-5922                     TCGA-FZ-5923 
"DEL PEAK 26(21Q21.1) WILD-TYPE" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
  "DEL PEAK 26(21Q21.1) MUTATED" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-H8-A6C1                     TCGA-HZ-7289 
  "DEL PEAK 26(21Q21.1) MUTATED" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-HZ-7918                     TCGA-HZ-7919 
  "DEL PEAK 26(21Q21.1) MUTATED"   "DEL PEAK 26(21Q21.1) MUTATED" 
                    TCGA-HZ-7922                     TCGA-HZ-7923 
  "DEL PEAK 26(21Q21.1) MUTATED" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-HZ-7924                     TCGA-HZ-7925 
"DEL PEAK 26(21Q21.1) WILD-TYPE" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-HZ-7926                     TCGA-HZ-8001 
"DEL PEAK 26(21Q21.1) WILD-TYPE" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-HZ-8002                     TCGA-HZ-8003 
"DEL PEAK 26(21Q21.1) WILD-TYPE" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-HZ-8005                     TCGA-HZ-8315 
  "DEL PEAK 26(21Q21.1) MUTATED" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-HZ-8317                     TCGA-HZ-8519 
"DEL PEAK 26(21Q21.1) WILD-TYPE" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-HZ-8636                     TCGA-HZ-8638 
  "DEL PEAK 26(21Q21.1) MUTATED" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-HZ-A49G                     TCGA-HZ-A49H 
"DEL PEAK 26(21Q21.1) WILD-TYPE" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-HZ-A4BH                     TCGA-HZ-A4BK 
  "DEL PEAK 26(21Q21.1) MUTATED"   "DEL PEAK 26(21Q21.1) MUTATED" 
                    TCGA-IB-7644                     TCGA-IB-7645 
  "DEL PEAK 26(21Q21.1) MUTATED" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-IB-7646                     TCGA-IB-7647 
  "DEL PEAK 26(21Q21.1) MUTATED" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-IB-7649                     TCGA-IB-7651 
  "DEL PEAK 26(21Q21.1) MUTATED"   "DEL PEAK 26(21Q21.1) MUTATED" 
                    TCGA-IB-7652                     TCGA-IB-7885 
"DEL PEAK 26(21Q21.1) WILD-TYPE"   "DEL PEAK 26(21Q21.1) MUTATED" 
                    TCGA-IB-7886                     TCGA-IB-7887 
  "DEL PEAK 26(21Q21.1) MUTATED"   "DEL PEAK 26(21Q21.1) MUTATED" 
                    TCGA-IB-7888                     TCGA-IB-7889 
"DEL PEAK 26(21Q21.1) WILD-TYPE" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-IB-7890                     TCGA-IB-7891 
"DEL PEAK 26(21Q21.1) WILD-TYPE" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-IB-7893                     TCGA-IB-7897 
"DEL PEAK 26(21Q21.1) WILD-TYPE" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-IB-8126                     TCGA-IB-8127 
"DEL PEAK 26(21Q21.1) WILD-TYPE" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-IB-A5SO                     TCGA-IB-A5SP 
"DEL PEAK 26(21Q21.1) WILD-TYPE"   "DEL PEAK 26(21Q21.1) MUTATED" 
                    TCGA-IB-A5SQ                     TCGA-IB-A5SS 
"DEL PEAK 26(21Q21.1) WILD-TYPE"   "DEL PEAK 26(21Q21.1) MUTATED" 
                    TCGA-IB-A5ST                     TCGA-IB-A6UG 
"DEL PEAK 26(21Q21.1) WILD-TYPE"   "DEL PEAK 26(21Q21.1) MUTATED" 
                    TCGA-LB-A7SX                     TCGA-OE-A75W 
  "DEL PEAK 26(21Q21.1) MUTATED"   "DEL PEAK 26(21Q21.1) MUTATED" 
                    TCGA-PZ-A5RE                     TCGA-Q3-A5QY 
"DEL PEAK 26(21Q21.1) WILD-TYPE" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-US-A779                     TCGA-US-A77E 
"DEL PEAK 26(21Q21.1) WILD-TYPE" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-US-A77J 
"DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-F2-6879                     TCGA-F2-6880 
"DEL PEAK 26(21Q21.1) WILD-TYPE" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"DEL PEAK 26(21Q21.1) WILD-TYPE" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"DEL PEAK 26(21Q21.1) WILD-TYPE" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"DEL PEAK 26(21Q21.1) WILD-TYPE"   "DEL PEAK 26(21Q21.1) MUTATED" 
                    TCGA-FB-A5VM                     TCGA-FB-A78T 
"DEL PEAK 26(21Q21.1) WILD-TYPE"   "DEL PEAK 26(21Q21.1) MUTATED" 
                    TCGA-FB-A7DR                     TCGA-FZ-5920 
"DEL PEAK 26(21Q21.1) WILD-TYPE"   "DEL PEAK 26(21Q21.1) MUTATED" 
                    TCGA-FZ-5922                     TCGA-FZ-5923 
"DEL PEAK 26(21Q21.1) WILD-TYPE" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
  "DEL PEAK 26(21Q21.1) MUTATED" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-H8-A6C1                     TCGA-HZ-7289 
  "DEL PEAK 26(21Q21.1) MUTATED" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-HZ-7918                     TCGA-HZ-7919 
  "DEL PEAK 26(21Q21.1) MUTATED"   "DEL PEAK 26(21Q21.1) MUTATED" 
                    TCGA-HZ-7922                     TCGA-HZ-7923 
  "DEL PEAK 26(21Q21.1) MUTATED" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-HZ-7924                     TCGA-HZ-7925 
"DEL PEAK 26(21Q21.1) WILD-TYPE" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-HZ-7926                     TCGA-HZ-8001 
"DEL PEAK 26(21Q21.1) WILD-TYPE" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-HZ-8002                     TCGA-HZ-8003 
"DEL PEAK 26(21Q21.1) WILD-TYPE" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-HZ-8005                     TCGA-HZ-8315 
  "DEL PEAK 26(21Q21.1) MUTATED" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-HZ-8317                     TCGA-HZ-8519 
"DEL PEAK 26(21Q21.1) WILD-TYPE" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-HZ-8636                     TCGA-HZ-8638 
  "DEL PEAK 26(21Q21.1) MUTATED" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-HZ-A49G                     TCGA-HZ-A49H 
"DEL PEAK 26(21Q21.1) WILD-TYPE" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-HZ-A4BH                     TCGA-HZ-A4BK 
  "DEL PEAK 26(21Q21.1) MUTATED"   "DEL PEAK 26(21Q21.1) MUTATED" 
                    TCGA-IB-7644                     TCGA-IB-7645 
  "DEL PEAK 26(21Q21.1) MUTATED" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-IB-7646                     TCGA-IB-7647 
  "DEL PEAK 26(21Q21.1) MUTATED" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-IB-7649                     TCGA-IB-7651 
  "DEL PEAK 26(21Q21.1) MUTATED"   "DEL PEAK 26(21Q21.1) MUTATED" 
                    TCGA-IB-7652                     TCGA-IB-7885 
"DEL PEAK 26(21Q21.1) WILD-TYPE"   "DEL PEAK 26(21Q21.1) MUTATED" 
                    TCGA-IB-7886                     TCGA-IB-7887 
  "DEL PEAK 26(21Q21.1) MUTATED"   "DEL PEAK 26(21Q21.1) MUTATED" 
                    TCGA-IB-7888                     TCGA-IB-7889 
"DEL PEAK 26(21Q21.1) WILD-TYPE" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-IB-7890                     TCGA-IB-7891 
"DEL PEAK 26(21Q21.1) WILD-TYPE" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-IB-7893                     TCGA-IB-7897 
"DEL PEAK 26(21Q21.1) WILD-TYPE" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-IB-8126                     TCGA-IB-8127 
"DEL PEAK 26(21Q21.1) WILD-TYPE" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-IB-A5SO                     TCGA-IB-A5SP 
"DEL PEAK 26(21Q21.1) WILD-TYPE"   "DEL PEAK 26(21Q21.1) MUTATED" 
                    TCGA-IB-A5SQ                     TCGA-IB-A5SS 
"DEL PEAK 26(21Q21.1) WILD-TYPE"   "DEL PEAK 26(21Q21.1) MUTATED" 
                    TCGA-IB-A5ST                     TCGA-IB-A6UG 
"DEL PEAK 26(21Q21.1) WILD-TYPE"   "DEL PEAK 26(21Q21.1) MUTATED" 
                    TCGA-LB-A7SX                     TCGA-OE-A75W 
  "DEL PEAK 26(21Q21.1) MUTATED"   "DEL PEAK 26(21Q21.1) MUTATED" 
                    TCGA-PZ-A5RE                     TCGA-Q3-A5QY 
"DEL PEAK 26(21Q21.1) WILD-TYPE" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-US-A779                     TCGA-US-A77E 
"DEL PEAK 26(21Q21.1) WILD-TYPE" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-US-A77J 
"DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-F2-6879                     TCGA-F2-6880 
"DEL PEAK 26(21Q21.1) WILD-TYPE" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"DEL PEAK 26(21Q21.1) WILD-TYPE" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"DEL PEAK 26(21Q21.1) WILD-TYPE" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"DEL PEAK 26(21Q21.1) WILD-TYPE"   "DEL PEAK 26(21Q21.1) MUTATED" 
                    TCGA-FB-A5VM                     TCGA-FB-A78T 
"DEL PEAK 26(21Q21.1) WILD-TYPE"   "DEL PEAK 26(21Q21.1) MUTATED" 
                    TCGA-FB-A7DR                     TCGA-FZ-5920 
"DEL PEAK 26(21Q21.1) WILD-TYPE"   "DEL PEAK 26(21Q21.1) MUTATED" 
                    TCGA-FZ-5922                     TCGA-FZ-5923 
"DEL PEAK 26(21Q21.1) WILD-TYPE" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
  "DEL PEAK 26(21Q21.1) MUTATED" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-H8-A6C1                     TCGA-HZ-7289 
  "DEL PEAK 26(21Q21.1) MUTATED" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-HZ-7918                     TCGA-HZ-7919 
  "DEL PEAK 26(21Q21.1) MUTATED"   "DEL PEAK 26(21Q21.1) MUTATED" 
                    TCGA-HZ-7922                     TCGA-HZ-7923 
  "DEL PEAK 26(21Q21.1) MUTATED" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-HZ-7924                     TCGA-HZ-7925 
"DEL PEAK 26(21Q21.1) WILD-TYPE" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-HZ-7926                     TCGA-HZ-8001 
"DEL PEAK 26(21Q21.1) WILD-TYPE" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-HZ-8002                     TCGA-HZ-8003 
"DEL PEAK 26(21Q21.1) WILD-TYPE" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-HZ-8005                     TCGA-HZ-8315 
  "DEL PEAK 26(21Q21.1) MUTATED" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-HZ-8317                     TCGA-HZ-8519 
"DEL PEAK 26(21Q21.1) WILD-TYPE" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-HZ-8636                     TCGA-HZ-8638 
  "DEL PEAK 26(21Q21.1) MUTATED" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-HZ-A49G                     TCGA-HZ-A49H 
"DEL PEAK 26(21Q21.1) WILD-TYPE" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-HZ-A4BH                     TCGA-HZ-A4BK 
  "DEL PEAK 26(21Q21.1) MUTATED"   "DEL PEAK 26(21Q21.1) MUTATED" 
                    TCGA-IB-7644                     TCGA-IB-7645 
  "DEL PEAK 26(21Q21.1) MUTATED" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-IB-7646                     TCGA-IB-7647 
  "DEL PEAK 26(21Q21.1) MUTATED" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-IB-7649                     TCGA-IB-7651 
  "DEL PEAK 26(21Q21.1) MUTATED"   "DEL PEAK 26(21Q21.1) MUTATED" 
                    TCGA-IB-7652                     TCGA-IB-7885 
"DEL PEAK 26(21Q21.1) WILD-TYPE"   "DEL PEAK 26(21Q21.1) MUTATED" 
                    TCGA-IB-7886                     TCGA-IB-7887 
  "DEL PEAK 26(21Q21.1) MUTATED"   "DEL PEAK 26(21Q21.1) MUTATED" 
                    TCGA-IB-7888                     TCGA-IB-7889 
"DEL PEAK 26(21Q21.1) WILD-TYPE" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-IB-7890                     TCGA-IB-7891 
"DEL PEAK 26(21Q21.1) WILD-TYPE" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-IB-7893                     TCGA-IB-7897 
"DEL PEAK 26(21Q21.1) WILD-TYPE" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-IB-8126                     TCGA-IB-8127 
"DEL PEAK 26(21Q21.1) WILD-TYPE" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-IB-A5SO                     TCGA-IB-A5SP 
"DEL PEAK 26(21Q21.1) WILD-TYPE"   "DEL PEAK 26(21Q21.1) MUTATED" 
                    TCGA-IB-A5SQ                     TCGA-IB-A5SS 
"DEL PEAK 26(21Q21.1) WILD-TYPE"   "DEL PEAK 26(21Q21.1) MUTATED" 
                    TCGA-IB-A5ST                     TCGA-IB-A6UG 
"DEL PEAK 26(21Q21.1) WILD-TYPE"   "DEL PEAK 26(21Q21.1) MUTATED" 
                    TCGA-LB-A7SX                     TCGA-OE-A75W 
  "DEL PEAK 26(21Q21.1) MUTATED"   "DEL PEAK 26(21Q21.1) MUTATED" 
                    TCGA-PZ-A5RE                     TCGA-Q3-A5QY 
"DEL PEAK 26(21Q21.1) WILD-TYPE" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-US-A779                     TCGA-US-A77E 
"DEL PEAK 26(21Q21.1) WILD-TYPE" "DEL PEAK 26(21Q21.1) WILD-TYPE" 
                    TCGA-US-A77J 
"DEL PEAK 26(21Q21.1) WILD-TYPE" 
[1] "hr=" "1.8"
D41V2, continuous
                                vv
clus                             STAGE IA STAGE IB STAGE IIA STAGE IIB
  DEL PEAK 26(21Q21.1) MUTATED          0        0         3        20
  DEL PEAK 26(21Q21.1) WILD-TYPE        2        4         8        30
                                vv
clus                             STAGE III STAGE IV
  DEL PEAK 26(21Q21.1) MUTATED           0        2
  DEL PEAK 26(21Q21.1) WILD-TYPE         2        1
D41V3, multiclass
                                vv
clus                             T1+T2 T3+T4
  DEL PEAK 26(21Q21.1) MUTATED       0    25
  DEL PEAK 26(21Q21.1) WILD-TYPE     7    40
D41V4, multiclass
       clus
vv      DEL PEAK 26(21Q21.1) MUTATED DEL PEAK 26(21Q21.1) WILD-TYPE
  T1+T2                            0                              7
  T3+T4                           25                             40
D41V5, binary
                                cls
clus                              0  1
  DEL PEAK 26(21Q21.1) MUTATED    4 21
  DEL PEAK 26(21Q21.1) WILD-TYPE 14 32
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 26(21Q21.1) MUTATED      4   21
  DEL PEAK 26(21Q21.1) WILD-TYPE   14   32
   clus
vv  DEL PEAK 26(21Q21.1) MUTATED DEL PEAK 26(21Q21.1) WILD-TYPE
  0                            4                             14
  1                           21                             32
                                vv
clus                             M0 M1 MX
  DEL PEAK 26(21Q21.1) MUTATED   16  2  7
  DEL PEAK 26(21Q21.1) WILD-TYPE 23  1 23
D41V6, multiclass
    clus
vv   DEL PEAK 26(21Q21.1) MUTATED DEL PEAK 26(21Q21.1) WILD-TYPE
  M0                           16                             23
  M1                            2                              1
  MX                            7                             23
D41V7, binary
                                cls
clus                              0  1
  DEL PEAK 26(21Q21.1) MUTATED   14 11
  DEL PEAK 26(21Q21.1) WILD-TYPE 22 25
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 26(21Q21.1) MUTATED     14   11
  DEL PEAK 26(21Q21.1) WILD-TYPE   22   25
        clus
vv       DEL PEAK 26(21Q21.1) MUTATED DEL PEAK 26(21Q21.1) WILD-TYPE
  FEMALE                           14                             22
  MALE                             11                             25
                                vv
clus                             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK 26(21Q21.1) MUTATED                                    23
  DEL PEAK 26(21Q21.1) WILD-TYPE                                  41
                                vv
clus                             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK 26(21Q21.1) MUTATED                                       2
  DEL PEAK 26(21Q21.1) WILD-TYPE                                     3
                                vv
clus                             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK 26(21Q21.1) MUTATED                                                  0
  DEL PEAK 26(21Q21.1) WILD-TYPE                                                2
D41V8, multiclass
                                                  clus
vv                                                 DEL PEAK 26(21Q21.1) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                        23
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                       2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                            0
                                                  clus
vv                                                 DEL PEAK 26(21Q21.1) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                          41
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                         3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                              2
D41V9, continuous
D41V10, continuous
                                vv
clus                             R0 R1 RX
  DEL PEAK 26(21Q21.1) MUTATED   11 13  0
  DEL PEAK 26(21Q21.1) WILD-TYPE 32 11  2
D41V11, multiclass
    clus
vv   DEL PEAK 26(21Q21.1) MUTATED DEL PEAK 26(21Q21.1) WILD-TYPE
  R0                           11                             32
  R1                           13                             11
  RX                            0                              2
D41V12, continuous

Clustering(42) Variable = DEL PEAK 27(22Q13.31) MUTATION ANALYSIS
D42V1, survival
                                 sevent
clus2                              0  1
  DEL PEAK 27(22Q13.31) MUTATED   12  8
  DEL PEAK 27(22Q13.31) WILD-TYPE 28 21
  DEL PEAK 27(22Q13.31) MUTATED DEL PEAK 27(22Q13.31) WILD-TYPE 
                             20                              49 
  DEL PEAK 27(22Q13.31) MUTATED DEL PEAK 27(22Q13.31) WILD-TYPE 
                              8                              21 
$`DEL PEAK 27(22Q13.31) MUTATED`
TCGA-F2-6879 TCGA-F2-A44H TCGA-FB-A78T TCGA-FB-A7DR TCGA-FZ-5920 TCGA-HZ-7919 
       10.98        19.27         0.03         5.46         2.01         0.66 
TCGA-HZ-8005 TCGA-HZ-8636 TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7646 
        3.95         0.16         6.38         1.51        11.41         4.77 
TCGA-IB-7886 TCGA-IB-7891 TCGA-IB-8127 TCGA-IB-A5SP TCGA-IB-A6UG TCGA-OE-A75W 
        4.04        16.04        17.16         9.86         1.35         3.62 
TCGA-PZ-A5RE TCGA-US-A779 
        8.12        16.80 

$`DEL PEAK 27(22Q13.31) WILD-TYPE`
TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-FB-A4P5 TCGA-FB-A545 
        9.70        11.84         7.10         5.03         0.13        12.66 
TCGA-FB-A5VM TCGA-FZ-5922 TCGA-FZ-5923 TCGA-H6-8124 TCGA-H6-A45N TCGA-H8-A6C1 
        2.47        36.20        20.81        12.89         7.66        13.02 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        7.89         0.92         0.13         0.26        12.13        11.87 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8317 
        0.26         0.62         0.79         0.69         0.92         0.53 
TCGA-HZ-8519 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-IB-7645 TCGA-IB-7647 
        0.10         2.99         0.76         0.95        49.38        21.90 
TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7887 TCGA-IB-7888 
       15.35        19.82        15.65        27.98         3.62        43.79 
TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-A5SO 
       15.81        19.66         3.85        15.98         0.56        10.82 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST TCGA-LB-A7SX TCGA-Q3-A5QY TCGA-US-A77E 
        7.20        15.12         0.26         4.18        13.68        14.14 
TCGA-US-A77J 
       18.67 

  DEL PEAK 27(22Q13.31) MUTATED DEL PEAK 27(22Q13.31) WILD-TYPE 
                           0.03                            0.10 
  DEL PEAK 27(22Q13.31) MUTATED DEL PEAK 27(22Q13.31) WILD-TYPE 
                          19.27                           49.38 
  DEL PEAK 27(22Q13.31) MUTATED DEL PEAK 27(22Q13.31) WILD-TYPE 
                          5.115                           7.890 
[1] "0.0 - 19.3 (5.1)" "0.1 - 49.4 (7.9)"
                     TCGA-F2-6879                      TCGA-F2-6880 
  "DEL PEAK 27(22Q13.31) MUTATED" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-F2-7273                      TCGA-F2-7276 
"DEL PEAK 27(22Q13.31) WILD-TYPE" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-F2-A44G                      TCGA-F2-A44H 
"DEL PEAK 27(22Q13.31) WILD-TYPE"   "DEL PEAK 27(22Q13.31) MUTATED" 
                     TCGA-FB-A4P5                      TCGA-FB-A545 
"DEL PEAK 27(22Q13.31) WILD-TYPE" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-FB-A5VM                      TCGA-FB-A78T 
"DEL PEAK 27(22Q13.31) WILD-TYPE"   "DEL PEAK 27(22Q13.31) MUTATED" 
                     TCGA-FB-A7DR                      TCGA-FZ-5920 
  "DEL PEAK 27(22Q13.31) MUTATED"   "DEL PEAK 27(22Q13.31) MUTATED" 
                     TCGA-FZ-5922                      TCGA-FZ-5923 
"DEL PEAK 27(22Q13.31) WILD-TYPE" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-H6-8124                      TCGA-H6-A45N 
"DEL PEAK 27(22Q13.31) WILD-TYPE" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-H8-A6C1                      TCGA-HZ-7289 
"DEL PEAK 27(22Q13.31) WILD-TYPE" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-HZ-7918                      TCGA-HZ-7919 
"DEL PEAK 27(22Q13.31) WILD-TYPE"   "DEL PEAK 27(22Q13.31) MUTATED" 
                     TCGA-HZ-7922                      TCGA-HZ-7923 
"DEL PEAK 27(22Q13.31) WILD-TYPE" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-HZ-7924                      TCGA-HZ-7925 
"DEL PEAK 27(22Q13.31) WILD-TYPE" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-HZ-7926                      TCGA-HZ-8001 
"DEL PEAK 27(22Q13.31) WILD-TYPE" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-HZ-8002                      TCGA-HZ-8003 
"DEL PEAK 27(22Q13.31) WILD-TYPE" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-HZ-8005                      TCGA-HZ-8315 
  "DEL PEAK 27(22Q13.31) MUTATED" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-HZ-8317                      TCGA-HZ-8519 
"DEL PEAK 27(22Q13.31) WILD-TYPE" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-HZ-8636                      TCGA-HZ-8638 
  "DEL PEAK 27(22Q13.31) MUTATED" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-HZ-A49G                      TCGA-HZ-A49H 
"DEL PEAK 27(22Q13.31) WILD-TYPE" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-HZ-A4BH                      TCGA-HZ-A4BK 
  "DEL PEAK 27(22Q13.31) MUTATED"   "DEL PEAK 27(22Q13.31) MUTATED" 
                     TCGA-IB-7644                      TCGA-IB-7645 
  "DEL PEAK 27(22Q13.31) MUTATED" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-IB-7646                      TCGA-IB-7647 
  "DEL PEAK 27(22Q13.31) MUTATED" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-IB-7649                      TCGA-IB-7651 
"DEL PEAK 27(22Q13.31) WILD-TYPE" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-IB-7652                      TCGA-IB-7885 
"DEL PEAK 27(22Q13.31) WILD-TYPE" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-IB-7886                      TCGA-IB-7887 
  "DEL PEAK 27(22Q13.31) MUTATED" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-IB-7888                      TCGA-IB-7889 
"DEL PEAK 27(22Q13.31) WILD-TYPE" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-IB-7890                      TCGA-IB-7891 
"DEL PEAK 27(22Q13.31) WILD-TYPE"   "DEL PEAK 27(22Q13.31) MUTATED" 
                     TCGA-IB-7893                      TCGA-IB-7897 
"DEL PEAK 27(22Q13.31) WILD-TYPE" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-IB-8126                      TCGA-IB-8127 
"DEL PEAK 27(22Q13.31) WILD-TYPE"   "DEL PEAK 27(22Q13.31) MUTATED" 
                     TCGA-IB-A5SO                      TCGA-IB-A5SP 
"DEL PEAK 27(22Q13.31) WILD-TYPE"   "DEL PEAK 27(22Q13.31) MUTATED" 
                     TCGA-IB-A5SQ                      TCGA-IB-A5SS 
"DEL PEAK 27(22Q13.31) WILD-TYPE" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-IB-A5ST                      TCGA-IB-A6UG 
"DEL PEAK 27(22Q13.31) WILD-TYPE"   "DEL PEAK 27(22Q13.31) MUTATED" 
                     TCGA-LB-A7SX                      TCGA-OE-A75W 
"DEL PEAK 27(22Q13.31) WILD-TYPE"   "DEL PEAK 27(22Q13.31) MUTATED" 
                     TCGA-PZ-A5RE                      TCGA-Q3-A5QY 
  "DEL PEAK 27(22Q13.31) MUTATED" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-US-A779                      TCGA-US-A77E 
  "DEL PEAK 27(22Q13.31) MUTATED" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-US-A77J 
"DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-F2-6879                      TCGA-F2-6880 
  "DEL PEAK 27(22Q13.31) MUTATED" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-F2-7273                      TCGA-F2-7276 
"DEL PEAK 27(22Q13.31) WILD-TYPE" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-F2-A44G                      TCGA-F2-A44H 
"DEL PEAK 27(22Q13.31) WILD-TYPE"   "DEL PEAK 27(22Q13.31) MUTATED" 
                     TCGA-FB-A4P5                      TCGA-FB-A545 
"DEL PEAK 27(22Q13.31) WILD-TYPE" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-FB-A5VM                      TCGA-FB-A78T 
"DEL PEAK 27(22Q13.31) WILD-TYPE"   "DEL PEAK 27(22Q13.31) MUTATED" 
                     TCGA-FB-A7DR                      TCGA-FZ-5920 
  "DEL PEAK 27(22Q13.31) MUTATED"   "DEL PEAK 27(22Q13.31) MUTATED" 
                     TCGA-FZ-5922                      TCGA-FZ-5923 
"DEL PEAK 27(22Q13.31) WILD-TYPE" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-H6-8124                      TCGA-H6-A45N 
"DEL PEAK 27(22Q13.31) WILD-TYPE" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-H8-A6C1                      TCGA-HZ-7289 
"DEL PEAK 27(22Q13.31) WILD-TYPE" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-HZ-7918                      TCGA-HZ-7919 
"DEL PEAK 27(22Q13.31) WILD-TYPE"   "DEL PEAK 27(22Q13.31) MUTATED" 
                     TCGA-HZ-7922                      TCGA-HZ-7923 
"DEL PEAK 27(22Q13.31) WILD-TYPE" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-HZ-7924                      TCGA-HZ-7925 
"DEL PEAK 27(22Q13.31) WILD-TYPE" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-HZ-7926                      TCGA-HZ-8001 
"DEL PEAK 27(22Q13.31) WILD-TYPE" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-HZ-8002                      TCGA-HZ-8003 
"DEL PEAK 27(22Q13.31) WILD-TYPE" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-HZ-8005                      TCGA-HZ-8315 
  "DEL PEAK 27(22Q13.31) MUTATED" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-HZ-8317                      TCGA-HZ-8519 
"DEL PEAK 27(22Q13.31) WILD-TYPE" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-HZ-8636                      TCGA-HZ-8638 
  "DEL PEAK 27(22Q13.31) MUTATED" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-HZ-A49G                      TCGA-HZ-A49H 
"DEL PEAK 27(22Q13.31) WILD-TYPE" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-HZ-A4BH                      TCGA-HZ-A4BK 
  "DEL PEAK 27(22Q13.31) MUTATED"   "DEL PEAK 27(22Q13.31) MUTATED" 
                     TCGA-IB-7644                      TCGA-IB-7645 
  "DEL PEAK 27(22Q13.31) MUTATED" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-IB-7646                      TCGA-IB-7647 
  "DEL PEAK 27(22Q13.31) MUTATED" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-IB-7649                      TCGA-IB-7651 
"DEL PEAK 27(22Q13.31) WILD-TYPE" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-IB-7652                      TCGA-IB-7885 
"DEL PEAK 27(22Q13.31) WILD-TYPE" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-IB-7886                      TCGA-IB-7887 
  "DEL PEAK 27(22Q13.31) MUTATED" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-IB-7888                      TCGA-IB-7889 
"DEL PEAK 27(22Q13.31) WILD-TYPE" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-IB-7890                      TCGA-IB-7891 
"DEL PEAK 27(22Q13.31) WILD-TYPE"   "DEL PEAK 27(22Q13.31) MUTATED" 
                     TCGA-IB-7893                      TCGA-IB-7897 
"DEL PEAK 27(22Q13.31) WILD-TYPE" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-IB-8126                      TCGA-IB-8127 
"DEL PEAK 27(22Q13.31) WILD-TYPE"   "DEL PEAK 27(22Q13.31) MUTATED" 
                     TCGA-IB-A5SO                      TCGA-IB-A5SP 
"DEL PEAK 27(22Q13.31) WILD-TYPE"   "DEL PEAK 27(22Q13.31) MUTATED" 
                     TCGA-IB-A5SQ                      TCGA-IB-A5SS 
"DEL PEAK 27(22Q13.31) WILD-TYPE" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-IB-A5ST                      TCGA-IB-A6UG 
"DEL PEAK 27(22Q13.31) WILD-TYPE"   "DEL PEAK 27(22Q13.31) MUTATED" 
                     TCGA-LB-A7SX                      TCGA-OE-A75W 
"DEL PEAK 27(22Q13.31) WILD-TYPE"   "DEL PEAK 27(22Q13.31) MUTATED" 
                     TCGA-PZ-A5RE                      TCGA-Q3-A5QY 
  "DEL PEAK 27(22Q13.31) MUTATED" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-US-A779                      TCGA-US-A77E 
  "DEL PEAK 27(22Q13.31) MUTATED" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-US-A77J 
"DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-F2-6879                      TCGA-F2-6880 
  "DEL PEAK 27(22Q13.31) MUTATED" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-F2-7273                      TCGA-F2-7276 
"DEL PEAK 27(22Q13.31) WILD-TYPE" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-F2-A44G                      TCGA-F2-A44H 
"DEL PEAK 27(22Q13.31) WILD-TYPE"   "DEL PEAK 27(22Q13.31) MUTATED" 
                     TCGA-FB-A4P5                      TCGA-FB-A545 
"DEL PEAK 27(22Q13.31) WILD-TYPE" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-FB-A5VM                      TCGA-FB-A78T 
"DEL PEAK 27(22Q13.31) WILD-TYPE"   "DEL PEAK 27(22Q13.31) MUTATED" 
                     TCGA-FB-A7DR                      TCGA-FZ-5920 
  "DEL PEAK 27(22Q13.31) MUTATED"   "DEL PEAK 27(22Q13.31) MUTATED" 
                     TCGA-FZ-5922                      TCGA-FZ-5923 
"DEL PEAK 27(22Q13.31) WILD-TYPE" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-H6-8124                      TCGA-H6-A45N 
"DEL PEAK 27(22Q13.31) WILD-TYPE" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-H8-A6C1                      TCGA-HZ-7289 
"DEL PEAK 27(22Q13.31) WILD-TYPE" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-HZ-7918                      TCGA-HZ-7919 
"DEL PEAK 27(22Q13.31) WILD-TYPE"   "DEL PEAK 27(22Q13.31) MUTATED" 
                     TCGA-HZ-7922                      TCGA-HZ-7923 
"DEL PEAK 27(22Q13.31) WILD-TYPE" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-HZ-7924                      TCGA-HZ-7925 
"DEL PEAK 27(22Q13.31) WILD-TYPE" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-HZ-7926                      TCGA-HZ-8001 
"DEL PEAK 27(22Q13.31) WILD-TYPE" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-HZ-8002                      TCGA-HZ-8003 
"DEL PEAK 27(22Q13.31) WILD-TYPE" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-HZ-8005                      TCGA-HZ-8315 
  "DEL PEAK 27(22Q13.31) MUTATED" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-HZ-8317                      TCGA-HZ-8519 
"DEL PEAK 27(22Q13.31) WILD-TYPE" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-HZ-8636                      TCGA-HZ-8638 
  "DEL PEAK 27(22Q13.31) MUTATED" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-HZ-A49G                      TCGA-HZ-A49H 
"DEL PEAK 27(22Q13.31) WILD-TYPE" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-HZ-A4BH                      TCGA-HZ-A4BK 
  "DEL PEAK 27(22Q13.31) MUTATED"   "DEL PEAK 27(22Q13.31) MUTATED" 
                     TCGA-IB-7644                      TCGA-IB-7645 
  "DEL PEAK 27(22Q13.31) MUTATED" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-IB-7646                      TCGA-IB-7647 
  "DEL PEAK 27(22Q13.31) MUTATED" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-IB-7649                      TCGA-IB-7651 
"DEL PEAK 27(22Q13.31) WILD-TYPE" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-IB-7652                      TCGA-IB-7885 
"DEL PEAK 27(22Q13.31) WILD-TYPE" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-IB-7886                      TCGA-IB-7887 
  "DEL PEAK 27(22Q13.31) MUTATED" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-IB-7888                      TCGA-IB-7889 
"DEL PEAK 27(22Q13.31) WILD-TYPE" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-IB-7890                      TCGA-IB-7891 
"DEL PEAK 27(22Q13.31) WILD-TYPE"   "DEL PEAK 27(22Q13.31) MUTATED" 
                     TCGA-IB-7893                      TCGA-IB-7897 
"DEL PEAK 27(22Q13.31) WILD-TYPE" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-IB-8126                      TCGA-IB-8127 
"DEL PEAK 27(22Q13.31) WILD-TYPE"   "DEL PEAK 27(22Q13.31) MUTATED" 
                     TCGA-IB-A5SO                      TCGA-IB-A5SP 
"DEL PEAK 27(22Q13.31) WILD-TYPE"   "DEL PEAK 27(22Q13.31) MUTATED" 
                     TCGA-IB-A5SQ                      TCGA-IB-A5SS 
"DEL PEAK 27(22Q13.31) WILD-TYPE" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-IB-A5ST                      TCGA-IB-A6UG 
"DEL PEAK 27(22Q13.31) WILD-TYPE"   "DEL PEAK 27(22Q13.31) MUTATED" 
                     TCGA-LB-A7SX                      TCGA-OE-A75W 
"DEL PEAK 27(22Q13.31) WILD-TYPE"   "DEL PEAK 27(22Q13.31) MUTATED" 
                     TCGA-PZ-A5RE                      TCGA-Q3-A5QY 
  "DEL PEAK 27(22Q13.31) MUTATED" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-US-A779                      TCGA-US-A77E 
  "DEL PEAK 27(22Q13.31) MUTATED" "DEL PEAK 27(22Q13.31) WILD-TYPE" 
                     TCGA-US-A77J 
"DEL PEAK 27(22Q13.31) WILD-TYPE" 
[1] "hr=" "1.8"
D42V2, continuous
                                 vv
clus                              STAGE IA STAGE IB STAGE IIA STAGE IIB
  DEL PEAK 27(22Q13.31) MUTATED          0        0         4        14
  DEL PEAK 27(22Q13.31) WILD-TYPE        2        4         7        36
                                 vv
clus                              STAGE III STAGE IV
  DEL PEAK 27(22Q13.31) MUTATED           0        2
  DEL PEAK 27(22Q13.31) WILD-TYPE         2        1
D42V3, multiclass
                                 vv
clus                              T1+T2 T3+T4
  DEL PEAK 27(22Q13.31) MUTATED       0    20
  DEL PEAK 27(22Q13.31) WILD-TYPE     7    45
D42V4, multiclass
       clus
vv      DEL PEAK 27(22Q13.31) MUTATED DEL PEAK 27(22Q13.31) WILD-TYPE
  T1+T2                             0                               7
  T3+T4                            20                              45
D42V5, binary
                                 cls
clus                               0  1
  DEL PEAK 27(22Q13.31) MUTATED    4 15
  DEL PEAK 27(22Q13.31) WILD-TYPE 14 38
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 27(22Q13.31) MUTATED      4   15
  DEL PEAK 27(22Q13.31) WILD-TYPE   14   38
   clus
vv  DEL PEAK 27(22Q13.31) MUTATED DEL PEAK 27(22Q13.31) WILD-TYPE
  0                             4                              14
  1                            15                              38
                                 vv
clus                              M0 M1 MX
  DEL PEAK 27(22Q13.31) MUTATED   13  2  5
  DEL PEAK 27(22Q13.31) WILD-TYPE 26  1 25
D42V6, multiclass
    clus
vv   DEL PEAK 27(22Q13.31) MUTATED DEL PEAK 27(22Q13.31) WILD-TYPE
  M0                            13                              26
  M1                             2                               1
  MX                             5                              25
D42V7, binary
                                 cls
clus                               0  1
  DEL PEAK 27(22Q13.31) MUTATED    6 14
  DEL PEAK 27(22Q13.31) WILD-TYPE 30 22
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 27(22Q13.31) MUTATED      6   14
  DEL PEAK 27(22Q13.31) WILD-TYPE   30   22
        clus
vv       DEL PEAK 27(22Q13.31) MUTATED DEL PEAK 27(22Q13.31) WILD-TYPE
  FEMALE                             6                              30
  MALE                              14                              22
                                 vv
clus                              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK 27(22Q13.31) MUTATED                                    17
  DEL PEAK 27(22Q13.31) WILD-TYPE                                  47
                                 vv
clus                              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK 27(22Q13.31) MUTATED                                       1
  DEL PEAK 27(22Q13.31) WILD-TYPE                                     4
                                 vv
clus                              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK 27(22Q13.31) MUTATED                                                  1
  DEL PEAK 27(22Q13.31) WILD-TYPE                                                1
D42V8, multiclass
                                                  clus
vv                                                 DEL PEAK 27(22Q13.31) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                         17
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                        1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                             1
                                                  clus
vv                                                 DEL PEAK 27(22Q13.31) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                           47
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                               1
D42V9, continuous
D42V10, continuous
                                 vv
clus                              R0 R1 RX
  DEL PEAK 27(22Q13.31) MUTATED    8 11  0
  DEL PEAK 27(22Q13.31) WILD-TYPE 35 13  2
D42V11, multiclass
    clus
vv   DEL PEAK 27(22Q13.31) MUTATED DEL PEAK 27(22Q13.31) WILD-TYPE
  R0                             8                              35
  R1                            11                              13
  RX                             0                               2
D42V12, continuous
> q(save="no")
